15 results on '"Berkenpas M"'
Search Results
2. Comparison of Dietary Approaches to Treat Obesity Based on the Different Carbohydrate/Fat Content: Impact on Weight Loss and Lipid Profile
- Author
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Zulet, M. A., Berkenpas, M. E., and Martinez, J. A.
- Published
- 2005
3. Modeling of integrated environmental control systems for coal-fired power plants
- Author
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Rubin, E.S., primary, Salmento, J.S., additional, Frey, H.C., additional, Abu-Baker, A., additional, and Berkenpas, M., additional
- Published
- 1991
- Full Text
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4. Modeling of integrated environmental control systems for coal-fired power plants. Final report
- Author
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Rubin, E.S., primary, Salmento, J.S., additional, Frey, H.C., additional, Abu-Baker, A., additional, and Berkenpas, M., additional
- Published
- 1991
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5. Preventing complications in celiac disease: Our experience with managing adult celiac disease
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Mulder, C.J., Wierdsma, N.J., Berkenpas, M., Jacobs, M.A.J.M., and Bouma, G.
- Abstract
Celiac disease is, as we know it, rather than being a rare and incurable disease until the 1950's, both quite common in screening studies and readily treatable. Three conditions are triggered by gluten consumption: celiac disease, the skin rash dermatitis herpetiformis and gluten ataxia. We describe our follow up for out clinic management, as evidence based data about such an approach are lacking in current literature. No food, beverages or medications containing any amount of gluten can be taken. Compliance is often difficult especially when patients are asymptomatic. We control a cohort, in daily practice, of over 700 adult patients. The majority of patients manage the diet without any problems. We describe our follow up in general, for serology, laboratory and histology. Forty percent of our newly diagnosed celiac patients do have a BMI over 25 kg/m2. An appropriate attitude for this problem is lacking. The problem of slowly weaning off Dapsone over 5–10 years in DH is recognized. The bone density is checked in all newly diagnosed celiac patients. We control, if necessary, by telephone and lab controls done in local cities and see our patients only every two years face-to-face for follow up. The main question is if the adherence to a GFD, quality of life and prevention of complications is improved by visiting a dedicated celiac clinic. We hope to standardize this attitude on evidence data in the years to come.
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- 2024
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6. Transformation-dependent activation of urokinase-type plasminogen activator by a plasmin-independent mechanism: involvement of cell surface membranes.
- Author
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Berkenpas, M B, primary and Quigley, J P, additional
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- 1991
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7. Identification and sequence of human PKY, a putative kinase with increased expression in multidrug-resistant cells, with homology to yeast protein kinase Yak 1
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Begley, D. A., Berkenpas, M. B., Sampson, K. E., and Abraham, I.
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- 1997
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8. Serpin-protease complexes are trapped as stable acyl-enzyme intermediates.
- Author
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Lawrence, D A, Ginsburg, D, Day, D E, Berkenpas, M B, Verhamme, I M, Kvassman, J O, and Shore, J D
- Abstract
The serine protease inhibitors of the serpin family are an unusual group of proteins thought to have metastable native structures. Functionally, they are unique among polypeptide protease inhibitors, although their precise mechanism of action remains controversial. Conflicting results from previous studies have suggested that the stable serpin-protease complex is trapped in either a tight Michaelis-like structure, a tetrahedral intermediate, or an acyl-enzyme. In this report we show that, upon association with a target protease, the serpin reactive-center loop (RCL) is cleaved resulting in formation of an acyl-enzyme intermediate. This cleavage is coupled to rapid movement of the RCL into the body of the protein bringing the inhibitor closer to its lowest free energy state. From these data we suggest a model for serpin action in which the drive toward the lowest free energy state results in trapping of the protease-inhibitor complex as an acyl-enzyme intermediate.
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- 1995
9. Modeling of integrated environmental control systems for coal-fired power plants. Final report
- Author
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Berkenpas, M
- Published
- 1991
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- View/download PDF
10. Refractory celiac disease and EATL patients show severe malnutrition and malabsorption at diagnosis.
- Author
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Wierdsma NJ, Nijeboer P, de van der Schueren MA, Berkenpas M, van Bodegraven AA, and Mulder CJ
- Subjects
- Adult, Body Mass Index, Celiac Disease therapy, Cross-Sectional Studies, Diarrhea epidemiology, Diarrhea etiology, Diarrhea physiopathology, Energy Intake, Energy Metabolism, Enteropathy-Associated T-Cell Lymphoma diagnosis, Enteropathy-Associated T-Cell Lymphoma etiology, Enteropathy-Associated T-Cell Lymphoma metabolism, Female, Hospitals, Teaching, Humans, Malabsorption Syndromes epidemiology, Malabsorption Syndromes physiopathology, Male, Malnutrition epidemiology, Malnutrition physiopathology, Middle Aged, Netherlands epidemiology, Outpatient Clinics, Hospital, Precancerous Conditions diagnosis, Precancerous Conditions etiology, Precancerous Conditions metabolism, Prevalence, Severity of Illness Index, Thinness epidemiology, Thinness etiology, Thinness physiopathology, Celiac Disease physiopathology, Enteropathy-Associated T-Cell Lymphoma physiopathology, Malabsorption Syndromes etiology, Malnutrition etiology, Nutritional Status, Precancerous Conditions physiopathology
- Abstract
Background & Aims: Refractory celiac disease type II (RCDII) and EATL (Enteropathy Associated T-cell Lymphoma) are (pre)malignant complications of celiac disease (CD). Data on malnutrition and intestinal absorption is lacking in these patients. Therefore, the aim of the study is to comprehensively assess nutritional status and intestinal absorption capacity of patients with RCDII and EATL, compared with data of newly diagnosed CD patients., Methods: Observational study in tertiary care setting in RCDII (n = 24, 63.8 ± 8.2 y), EATL (n = 25, 62.3 ± 5.7 y) and CD patients (n = 43, 45.6 ± 14.8 y). At diagnosis, anthropometry (BMI, unintentional weight loss, fat-free mass index (FFMI), handgrip strength (HGS), nutritional intake, fecal losses and Resting Energy Expenditure (REE)) were assessed., Results: Low BMI (<18.5) was more often observed in RCDII patients than in CD or EATL patients (in 33%, 12% and 12%, respectively, p = 0.029). EATL patients more frequently had unintentional weight loss (>10%) than CD or RCDII patients (in 58%, 19% and 39% of patients, respectively; p = 0.005/0.082). Energy malabsorption (<85%) was detected in 44% and 33% of RCDII and EATL patients, vs 21.6% in CD (NS). Fecal energy losses were higher in RCDII than in CD patients (589 ± 451 vs 277 ± 137 kcal/d, p = 0.017). REE was underestimated by predicted-REE with>10% in 60% of RCDII, 89% of EATL, and 38% of CD patients (p = 0.006). Low FFMI and HGS were detected in one third and two thirds of all patients, respectively., Conclusions: The nutritional status of patients with RCDII and EATL is inferior compared with untreated naïve CD patients at presentation. Both malabsorption as well as hypermetabolism contribute to malnutrition., (Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2016
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11. Vitamin and mineral deficiencies are highly prevalent in newly diagnosed celiac disease patients.
- Author
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Wierdsma NJ, van Bokhorst-de van der Schueren MA, Berkenpas M, Mulder CJ, and van Bodegraven AA
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- Adolescent, Adult, Aged, Body Mass Index, Case-Control Studies, Celiac Disease blood, Celiac Disease complications, Cohort Studies, Diet, Gluten-Free, Female, Ferritins blood, Folic Acid blood, Hemoglobins metabolism, Humans, Male, Middle Aged, Netherlands epidemiology, Obesity blood, Obesity complications, Obesity epidemiology, Prevalence, Vitamin A blood, Vitamin B 12 blood, Vitamin B 6 blood, Vitamin D blood, Weight Loss, Young Adult, Zinc blood, Celiac Disease diagnosis, Micronutrients administration & dosage, Micronutrients deficiency, Nutritional Status
- Abstract
Malabsorption, weight loss and vitamin/mineral-deficiencies characterize classical celiac disease (CD). This study aimed to assess the nutritional and vitamin/mineral status of current "early diagnosed" untreated adult CD-patients in the Netherlands. Newly diagnosed adult CD-patients were included (n = 80, 42.8 ± 15.1 years) and a comparable sample of 24 healthy Dutch subjects was added to compare vitamin concentrations. Nutritional status and serum concentrations of folic acid, vitamin A, B₆, B₁₂, and (25-hydroxy) D, zinc, haemoglobin (Hb) and ferritin were determined (before prescribing gluten free diet). Almost all CD-patients (87%) had at least one value below the lower limit of reference. Specifically, for vitamin A, 7.5% of patients showed deficient levels, for vitamin B₆ 14.5%, folic acid 20%, and vitamin B₁₂ 19%. Likewise, zinc deficiency was observed in 67% of the CD-patients, 46% had decreased iron storage, and 32% had anaemia. Overall, 17% were malnourished (>10% undesired weight loss), 22% of the women were underweight (Body Mass Index (BMI) < 18.5), and 29% of the patients were overweight (BMI > 25). Vitamin deficiencies were barely seen in healthy controls, with the exception of vitamin B₁₂. Vitamin/mineral deficiencies were counter-intuitively not associated with a (higher) grade of histological intestinal damage or (impaired) nutritional status. In conclusion, vitamin/mineral deficiencies are still common in newly "early diagnosed" CD-patients, even though the prevalence of obesity at initial diagnosis is rising. Extensive nutritional assessments seem warranted to guide nutritional advices and follow-up in CD treatment.
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- 2013
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12. The active conformation of plasminogen activator inhibitor 1, a target for drugs to control fibrinolysis and cell adhesion.
- Author
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Sharp AM, Stein PE, Pannu NS, Carrell RW, Berkenpas MB, Ginsburg D, Lawrence DA, and Read RJ
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- Binding Sites, Crystallography, X-Ray, Models, Molecular, Mutation genetics, Plasminogen Activator Inhibitor 1 genetics, Protein Binding, Protein Structure, Secondary, Protein Structure, Tertiary, Serine Proteinase Inhibitors chemistry, Serpins chemistry, Vitronectin metabolism, Cell Adhesion drug effects, Fibrinolysis drug effects, Plasminogen Activator Inhibitor 1 chemistry, Protein Conformation
- Abstract
Background: Plasminogen activator inhibitor 1 (PAI-1) is a serpin that has a key role in the control of fibrinolysis through proteinase inhibition. PAI-1 also has a role in regulating cell adhesion processes relevant to tissue remodeling and metastasis; this role is mediated by its binding to the adhesive glycoprotein vitronectin rather than by proteinase inhibition. Active PAI-1 is metastable and spontaneously transforms to an inactive latent conformation. Previous attempts to crystallize the active conformation of PAI-1 have failed., Results: The crystal structure of a stable quadruple mutant of PAI-1(Asn150-->His, Lys154-->Thr, Gln319-->Leu, Met354-->Ile) in its active conformation has been solved at a nominal 3 A resolution. In two of four independent molecules within the crystal, the flexible reactive center loop is unconstrained by crystal-packing contacts and is disordered. In the other two molecules, the reactive center loop forms intimate loop-sheet interactions with neighboring molecules, generating an infinite chain within the crystal. The overall conformation resembles that seen for other active inhibitory serpins., Conclusions: The structure clarifies the molecular basis of the stabilizing mutations and the reduced affinity of PAI-1, on cleavage or in the latent form, for vitronectin. The infinite chain of linked molecules also suggests a new mechanism for the serpin polymerization associated with certain diseases. The results support the concept that the reactive center loop of an active serpin is flexible and has no defined conformation in the absence of intermolecular contacts. The determination of the structure of the active form constitutes an essential step for the rational design of PAI-1 inhibitors.
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- 1999
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13. Molecular evolution of plasminogen activator inhibitor-1 functional stability.
- Author
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Berkenpas MB, Lawrence DA, and Ginsburg D
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- Amino Acid Sequence, Binding Sites genetics, Computer Simulation, Enzyme Activation genetics, Enzyme Stability genetics, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Plasminogen Activator Inhibitor 1 genetics, Point Mutation, Protein Conformation, Biological Evolution, Plasminogen Activator Inhibitor 1 chemistry
- Abstract
Plasminogen activator inhibitor-1 (PAI-1) is a member of the serine protease inhibitor (serpin) supergene family and a central regulatory protein in the blood coagulation system. PAI-1 is unique among serpins in exhibiting distinct active and inactive (latent) conformations in vivo. Though the structure of latent PAI-1 was recently solved, the structure of the short-lived, active form of PAI-1 is not known. In order to probe the structural basis for this unique conformational change, a randomly mutated recombinant PAI-1 expression library was constructed in bacteriophage and screened for increased functional stability. Fourteen unique clones were selected, and shown to exhibit functional half-lives (T1/2S) exceeding that of wild-type PAI-1 by up to 72-fold. The most stable variant (T1/2 = 145 h) contained four mutations. Detailed analysis of these four mutations, individually and in combination, demonstrated that the markedly enhanced functional stability of the parent compound mutant required contributions from all four substitutions, with no individual T1/2 exceeding 6.6 h. The functional stability of at least eight of the remaining 13 compound mutants also required interactions between two or more amino acid substitutions, with no single variant increasing the T1/2 by > 10-fold. The nature of the identified mutations implies that the unique instability of the PAI-1 active conformation evolved through global changes in protein packing and suggest a selective advantage for transient inhibitor function.
- Published
- 1995
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14. Localization of vitronectin binding domain in plasminogen activator inhibitor-1.
- Author
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Lawrence DA, Berkenpas MB, Palaniappan S, and Ginsburg D
- Subjects
- Amino Acid Sequence, Base Sequence, Binding Sites, Cloning, Molecular, DNA, Complementary, Escherichia coli genetics, Molecular Sequence Data, Mutagenesis, Plasminogen Activator Inhibitor 1 chemistry, Plasminogen Activator Inhibitor 1 genetics, Point Mutation, Protein Conformation, Sequence Analysis, DNA, Vitronectin, Glycoproteins metabolism, Plasminogen Activator Inhibitor 1 metabolism
- Abstract
Plasminogen activator inhibitor type 1 (PAI-1) is the rapid physiologic inhibitor of tissue-type plasminogen activator and urokinase-type plasminogen activator (uPA). In plasma and the extracellular matrix, PAI-1 is associated with the adhesive glycoprotein vitronectin. In order to characterize the PAI-1 structural domain responsible for binding to vitronectin, the segment of the PAI-1 cDNA encoding amino acids 13-147 (nucleotides 248-650) was randomly mutagenized and subcloned into a bacterial expression vector containing the mature PAI-1 coding sequence. Recombinant PAI-1 mutants were expressed in Escherichia coli and bacterial lysates assayed in duplicate for uPA inhibitory activity and vitronectin binding. Of 190 clones screened, six consistently demonstrated decreased vitronectin binding relative to uPA inhibitory activity. DNA sequence analysis of four of these clones identified 10 unique missense mutations, all located between base pairs 298 and 641, with each clone containing between one and four substitutions. Each substitution was expressed independently by site-directed mutagenesis and again analyzed for uPA inhibitory activity and vitronectin binding. Five point mutations that selectively disrupt vitronectin binding were identified. All 5 residues are located on the exterior of the PAI-1 structure. These findings appear to define a complex binding surface that bridges alpha-helices C and E to beta-strand 1A and includes amino acids 55, 109, 110, 116, and 123. These results suggest that vitronectin binding may stabilize the active conformation of PAI-1 by restricting the movement of beta-sheet A and thereby preventing insertion of the reactive center loop.
- Published
- 1994
15. Serine protease and metallo protease cascade systems involved in pericellular proteolysis.
- Author
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Quigley JP, Berkenpas MB, Aimes RT, and Chen JM
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- Amino Acid Sequence, Animals, Avian Sarcoma Viruses, Cell Line, Transformed, Cell Transformation, Viral, Chick Embryo, Enzyme Activation, Fibroblasts enzymology, Gelatinases, Mammals, Membrane Proteins metabolism, Microbial Collagenase metabolism, Molecular Sequence Data, Pepsin A metabolism, Species Specificity, Substrate Specificity, Extracellular Matrix Proteins metabolism, Metalloendopeptidases metabolism, Neoplasm Proteins metabolism, Plasminogen Activators metabolism, Proteins metabolism, Urokinase-Type Plasminogen Activator metabolism
- Abstract
Cultures of transformed fibroblasts actively involved in extracellular matrix degradation have been examined for initial activation of serine and metallo protease cascade systems. Rous sarcoma virus transformed chick embryo fibroblasts (RSVCEF), in contrast to transformed mammalian cells, produce active, two chain urokinase-type plasminogen activator (tcu-PA). Active tcu-PA is found in serum-free, plasmin-free conditioned medium from RSVCEF cultures as determined by two independent methods, immunoprecipitation and differential DFP sensitivity. RSVCEF cultures synthesize and secrete inactive, single chain uPA (scu-PA) which is converted to tcu-PA in a time dependent manner by a catalytic mechanism that appears to involve a functioning uPA receptor on the surface of intact cells. The enzyme activity responsible for this conversion may represent the initiating catalytic event in the PA/plasminogen serine protease cascade system. A 70 kDa prometalloprotease capable of degrading denatured collagen following its activation also is significantly elevated in RSVCEF cultures over that of normal CEF. Trace amounts of the active 62 kDa form of the metalloprotease (gelatinase) is found in the transformed RSVCEF cultures indicating that these cultures produce a natural activator of the prometalloprotease. Plasmin and/or PA do not appear to be the activator of this enzyme as determined by indirect inhibition assays and direct assays employing purified enzymes. The possible central position of pro PA and the 70 kDa prometalloprotease in an interacting, complex protease cascade system involved in extracellular matrix degradation is discussed.
- Published
- 1990
- Full Text
- View/download PDF
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