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1. DNA liquid biopsy-based prediction of cancer-associated venous thromboembolism

2. Ultrasensitive plasma-based monitoring of tumor burden using machine-learning-guided signal enrichment

3. Neoplasia risk in patients with Lynch syndrome treated with immune checkpoint blockade

4. Inherited Germline Cancer Susceptibility Gene Variants in Individuals with Non-Muscle-Invasive Bladder Cancer

6. Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing

7. Antitumour activity of neratinib in patients with HER2-mutant advanced biliary tract cancers

9. Pathogenic germline variants in non-BRCA1/2 homologous recombination genes in ovarian cancer: Analysis of tumor phenotype and survival

10. The context-specific role of germline pathogenicity in tumorigenesis

11. Tumor sequencing of African ancestry reveals differences in clinically relevant alterations across common cancers

12. First-line regorafenib with nivolumab and chemotherapy in advanced oesophageal, gastric, or gastro-oesophageal junction cancer in the USA: a single-arm, single-centre, phase 2 trial

13. Prospective pan-cancer germline testing using MSK-IMPACT informs clinical translation in 751 patients with pediatric solid tumors

14. Unique Genomic Alterations and Microbial Profiles Identified in Patients With Gastric Cancer of African, European, and Asian Ancestry: A Novel Path for Precision Oncology

15. Germline drivers of gynecologic carcinosarcomas

16. Overall survival with circulating tumor DNA-guided therapy in advanced non-small-cell lung cancer

17. Genomic mapping of metastatic organotropism in lung adenocarcinoma

19. Genomic and transcriptomic determinants of response to neoadjuvant therapy in rectal cancer

20. Table S15 from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

21. Figure S5: GDD-ENS Performance Across Purity Values from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

22. Figure S3: Confusion Matrix Across All Confidence Predictions from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

23. Figure S4: Ancestry Accuracy Differentials from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

24. Figure S6: Individual Type Shapley Values from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

25. Figure S1: Accuracy of Feature-Specific Classifiers from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

26. Figure S2: GDD-ENS Precision Recall Curves from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

27. Figure S7: Individual Type Shapley Values - Broad Categories from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

28. Supplementary Methods from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

29. Figure S8: Organ Shapley Value Distributions from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

30. Figure S11: Heatmap of Labels Mapped for Adaptable Prior Distributions from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

31. Figure S12: Results flow for Met Site, Histology Prior from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

32. Figure S10: KRAS Shapley Values across typesSupplementary Data from Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data

33. Genomic Landscape of Adenocarcinomas Across the Gastroesophageal Junction

35. Utility of circulating tumor DNA (ctDNA) from cerebrospinal fluid (CSF) for prognosis of patients with recurrent high grade glioma.

36. Tracking the FDA precision oncology drug approval landscape in OncoKB.

37. Machine learning predictions improve identification of real-world cancer driver mutations

39. Improved prediction of immune checkpoint blockade efficacy across multiple cancer types

40. Author Correction: The evolution of RET inhibitor resistance in RET-driven lung and thyroid cancers

42. Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets

43. ERα-LBD, an isoform of estrogen receptor alpha, promotes breast cancer proliferation and endocrine resistance

44. The evolution of RET inhibitor resistance in RET-driven lung and thyroid cancers

45. Comprehensive detection of germline variants by MSK-IMPACT, a clinical diagnostic platform for solid tumor molecular oncology and concurrent cancer predisposition testing

46. GENOMIC CHARACTERIZATION OF HIGH-GRADE TA UROTHELIAL CARCINOMA WITH AND WITHOUT CARCINOMA IN SITU

47. Deep Learning Model for Tumor Type Prediction using Targeted Clinical Genomic Sequencing Data

49. Abstract C074: Clinico-genomic characterization of N=2,460 pancreatic adenocarcinoma identifies KRASMUT dosage as prognostic of overall survival across disease stages

50. Figure S1 from Quantifying the Expanding Landscape of Clinical Actionability for Patients with Cancer

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