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Understanding the complex relationships between benthic algal communities and environmental factors is crucial for ecosystem management and conservation. In this study, we investigated benthic algal communities in the upper Red River Basin in China. We collected data on land use, topography and other factors at the watershed scales to gain a comprehensive understanding in the upper Red River Basin in China. Partial canonical correspondence analysis, partial redundancy analysis and variance partitioning analysis methods were used to assess the effects of watershed and local environmental factors on benthic algal communities and their variation. The percentage of landscape that was forest (F-PL), the percentage of landscape that was cropland (C-PL), the percentage of landscape that was water (W-PL), elevation, slope, pH and water level fluctuation (WF) were identified as significant factors affecting the distribution of benthic algal communities. The diversity of benthic algal communities were greatly affected by environmental factors as F-PL, W-PL, precipitation (Prcp), slope, permanganate index (CODMn) and index of substrate (IOS). Slope, F-PL and Prcp showed a positive correlation with species evenness and a negative correlation with community density. The characteristics of functional groups of benthic algae were also shown to be strongly influenced by C-PL and IOS. According to the variance decomposition (VPA) results, it can be seen that, although the explanatory power of individual local and watershed environmental factors was roughly similar, their joint explanatory power was relatively low. Therefore, the influence of watershed environmental factors on benthic algal communities should not be overlooked. [ABSTRACT FROM AUTHOR]

Despite the fact that scientists are aware that the streambed consists of various substrata in size, the estimation of benthic algal biomass has been conducted based almost exclusively on cobble sampling. This disparity in samples selected for the biomass estimation occurs because frame sampling collects all substrata, encompassed by the frame, including sand and stones, and is a time‐consuming method compared to single‐stone sampling. We conducted frame versus cobble sampling to test for sample selection disparity (SSD) in the estimation of benthic algal biomass. Estimates of algal biomass based on the frame sampling (area: 0.25 m2) were compared with those based on the cobble sampling taken at the same sampling points in a diatom‐dominated stream. Benthic algal biomass estimated based on cobble sampling was larger than the biomass estimated with frame sampling. The contribution of cobbles to the algal biomass encompassed by the frame was considerably higher than smaller substrata. These results suggest that cobble sampling tends to result in an overestimate of the benthic algal biomass in natural streams. Because the frame sampling requires intensive labor and time, we here proposed a general model based on quick visual assessments for percentage cover of cobbles on the streambed to calibrate estimates obtained by cobble sampling. [ABSTRACT FROM AUTHOR]

Benthic algae and autotrophic seston are important bases of stream food webs, and several different environmental factors may influence their biomass. We explored how benthic algae and autotrophic seston biomass (using chlorophyll-a as a proxy for algal biomass) were associated with stream temperature, channel width, canopy cover, stream cardinal orientation, benthic macroinvertebrate functional feeding group abundance, salmonid biomass, and water velocity in 16 small, fish-bearing streams in the temperate rainforest of the Olympic Peninsula in Washington State, USA, in the summer of 2020. We performed a mixed-effects regression analysis of extracted chlorophyll-a (chl-a) and then used model averaging to determine significant (α = 0.05) algal–environmental associations for benthic algae and autotrophic seston separately. We found that benthic algae chl-a concentration increased significantly with stream temperature (p = 0.0085) and decreased significantly with water velocity (p = 0.0053). For autotrophic seston, we found that chl-a concentration increased significantly with benthic macroinvertebrate predator abundance (p = 0.0007) and stream temperature (p = 0.0160). This study underscores the need to consider a broad range of environmental variables when making research and management decisions concerning stream ecology. [ABSTRACT FROM AUTHOR]

Habitat fragmentation is emerging as a leading cause of biodiversity decline in riverine ecosystems. Several natural and human factors contribute to the fragmentation of rivers. River fragmentation is a growing problem that is widely spread and poses a significant challenge to the conservation of freshwater biodiversity, but its impact is not fully documented and acknowledged. Fragmentation impedes the movement of aquatic organisms and alters natural flow regimes, disrupting habitats and trophic supplies for aquatic biodiversity. It can also affect the adaptive ability of organisms to natural environmental changes, leading to a change in the structure and function of biotic communities. To understand the effects of fragmentation on river ecology, it is crucial to link its spatial and structural implications. This article examines the occurrence and frequency of fragmentation and its effects on the ecological community of benthic biota. This review aims to elucidate the overall effects of fragmentation on river ecology and recommends the possible measures to mitigate its impact. Urgent action is required to establish a comprehensive global network of free‐flowing river systems and revive previously exploited rivers in different regions to enhance the protection and sustainable utilization of river ecosystems. [ABSTRACT FROM AUTHOR]

The mobilization of internal phosphorus (P) plays a crucial role in transitioning nutrient limitations within lake ecosystems. While previous research has extensively examined P release in littoral zones influenced by fluctuating water levels, there is a paucity of studies addressing the implications of sustained water level rise in this context, particularly as it pertains to nutrient limitations in benthic algae. To address this gap, we conducted an integrated study in Qinghai Lake. In the field sampling and microcosm experiment, we found that P concentrations are elevated in areas subjected to short-term inundation compared to those enduring prolonged inundation, primarily due to the dissolution of sedimentary P fractions. The results of nutrient diffusing substrata (NDS) bioassays indicated that benthic algae in Qinghai Lake displayed either P limitation or NP co-limitation. The transition from P limitation to NP co-limitation suggested that internal P release may serve to ameliorate nutrient limitations in benthic algae. This phenomenon could potentially contribute to the proliferation of Cladophora in the littoral zones of Qinghai Lake, thereby posing long-term implications for the lake's aquatic ecosystem, particularly under conditions of sustained water level rise. [ABSTRACT FROM AUTHOR]

Subarctic ecosystems represent a vulnerable environment for their biota and studying their habitats provides a better understanding of ongoing and accelerated environmental change. Literature suggests that habitat and environmental variables such as water chemistry jointly influence benthic algal species richness and assemblage composition. However, the combined effects of habitat and water chemistry on benthic algal communities are poorly understood especially in subarctic freshwaters. This study compared benthic diatom assemblages on rocks and on sediment and examined if environmental variables affect diatoms similarly in these habitats. A total of 20 subarctic ponds were sampled for diatoms on sediment and rock in summer 2022 in northern Fennoscandia. Differences in species richness and Pielou evenness between habitats were analysed by a paired Wilcoxon signed-rank test. The most significant environmental variables influencing diatom species richness were determined by generalized linear models. Differences in diatom assemblage compositions were analysed using non-metric multidimensional scaling, analysis of similarities, and Jaccard similarity index. Finally, to study how environmental variables shape diatom compositions on rock and sediment, a redundancy analysis was performed. According to our results species richness and evenness were significantly higher on sediment than on rock, and water pH was the major determinant for diatom richness in both habitats. Diatom assemblage composition did not differ between rocks and sediment, and composition was shaped by the same environmental variables such as pond surface area and water pH in both habitats. Our results support the prevailing conception that sediment habitat contains higher diatom species richness than rocks, while assemblage composition does not differ between these habitats. This study highlights the role of water pH on benthic diatoms regardless of their habitat. Given that global warming is expected to affect water pH levels, such a change will probably have a notable influence also on subarctic diatom communities in the future decades. [ABSTRACT FROM AUTHOR]

A series of hydraulic experiments were conducted for quantitative evaluation on the detachment effect of benthic algae on uneven riverbeds caused by sediment loading. We focused on the shielding part created by the exposure height of gravel and the width between pieces of gravel. The experimental results showed that the shielding was affected by both the exposure height of gravel and the width between pieces of gravel, with the exposure height of gravel having the larger effect. In addition, it was suggested that the movement of the sediment was restricted by an uneven riverbed. In order to take into account the effect of the shielding, a shielding coefficient was introduced to examine the effective tractive force and effective amount of work. There was a positive correlation between effective tractive force and the effective amount of work with the detachment characteristic value. Thus, it is possible to estimate the detachment characteristic value in uneven riverbed using the effective tractive force and effective amount of work.

Outbreaks of crown-of-thorn starfish (COTS) have caused dramatic declines in reefs through predation on corals, but the post-bloom effects of COTS may still potentially threaten the environment and living organisms due to massive organic decomposition. This stimulation experiment showed that the decomposition of COTS debris triggered an extra mineralization process and resulted in acidifying, hypoxic, and eutrophic seawater. Consequently, the photosynthetic efficiency of coral symbionts decreased by 83%, and coral bleached after removing the stress within two days, then the coral skeleton dissolved at rates of 0.02–0.05 mg cm−2 day−1. Within two weeks, the photosynthesis and growth of benthic algae were suppressed by 27–86% and 1.5–16%, respectively. The mortality of turf algae and coralline algae indicated compromised primary productivity and limited coral recruitment, respectively. However, macroalgae, as coral competitors, became the only survivors, with increasing chlorophyll content. This study suggests a continuing decline of reefs during the collapse phase of COTS outbreaks and highlights the need for improving control strategies for the COTS population. [ABSTRACT FROM AUTHOR]

Light and nutrient availability determine the depth distribution of littoral attached algae, but erosional forces, such as wind waves, structure shallow, nearshore habitats. We measured the biomass and productivity of algae on cobbles (epilithon) in the wave-influenced erosional zones of two large lakes with contrasting trophic status, eutrophic Lake Erie and oligotrophic Lake Huron. We used fetch and wind speed to create an index of wave exposure for 10 sample sites and used regression models to determine the variation in algal biomass and productivity explained by physicochemical parameters. Lake Erie epilithon had greater biomass (average = 59–249 mg chlorophyll a m−2) and higher productivity (76–92 mg C m−2 hr−1) than Lake Huron epilithon (1–147 mg m−2 and 14–57 mg C m−2 hr−1, respectively). In Lake Erie, light and wave exposure had significant and opposite effects on algal biomass and productivity. Maximum algal biomass occurred between 1.5 and 3 m in Lake Erie, where the effects of waves begin to diminish and light was still relatively abundant. Conversely, Lake Huron biomass was uniformly low along the depth gradient. Although depth or wave exposure did not explain variation in biomass, Lake Huron epilithic productivity was best explained by the interaction between depth and wave exposure. Rocky nearshore areas in large lakes are dynamic habitats for attached algae, leading to high spatial variation in biomass and productivity. Understanding how physicochemical dynamics influence benthic algal biomass and productivity are necessary to predict their distributions in a changing world. [ABSTRACT FROM AUTHOR]

Animals must invest some portion of their metabolism to activities related to physiological maintenance and the remainder to processes related to the production of new biomass for growth and reproduction. Animal metabolism is fuelled by food, and the quality and quantity of food, along with the effort invested to obtain it, are fundamental to supporting populations. Biofilms are a primary basal food resource within riverine food webs, and it is thought that their nutritional value for animals decreases with age due to dynamic changes in community composition. We sought to test assumptions of spatiotemporal changes to biofilm nutritional value by assessing variations in biofilm mass and fatty acid composition in three rivers for 73 days. We also used a multi‐prong eDNA approach to characterize changes to biofilm fungal (ITS1–4), bacterial (16S), and algal (23S) community compositions. We anticipated biofilm food value to decrease with biofilm age due to shifts in composition from high‐quality green algae and diatoms to low‐quality cyanobacteria and filamentous algae. Our results partially support this contention; biofilm food value, assessed as a combination of fatty acid mass per unit area (in grams per square meter) and concentration of fatty acids (in milligrams per gram), was dynamic and peaked between 24 and 43 days following submersion. After 43 days, biofilm food value decreased. However, despite significant temporal changes in biofilm community composition and a decrease in overall lipid concentration, the proportions of different fatty acid classes among total lipids did not vary. Instead, the observed increase in the abundance of cyanobacteria and filamentous algae compared with diatoms and green algae, along with higher quantities of lipid‐poor extracellular polymeric substances (EPS), likely contributed to the reduction in overall lipid concentration relative to the biofilm dry mass. Here we present a novel approach to balance consumer energetic costs with food quality within aquatic food webs. Our results have important implications for river management and provide valuable information for the use of environmental water to support lotic ecosystems. [ABSTRACT FROM AUTHOR]

Climate change is accelerating the global loss of glaciers with potentially striking consequences for downstream ecosystems. However, there exists limited evidence of the ecological impacts of glacier loss in meltwater streams, particularly in those outside of North America and Europe. We provide a review of the abiotic conditions in glacial streams that are potential factors of their ecosystem function and biodiversity with an emphasis on their key primary producers, namely rock-attached algae or "epilithon". Here, shrinking glaciers discharge over time less turbid melt waters, resulting in slower moving and more transparent stream conditions that are also warmer and more chemically dilute. We hypothesize that these environmental changes will stimulate epilithic algal growth while also shifting its community structure towards larger and less nutritious taxa. Although such an increase in algal growth may benefit the productive harvestable fish capacity of certain mountain streams, a potential negative trade-off involves the proliferation of nuisance algae (e.g., Didymosphenia geminata), which thrives under clear, nutrient-poor mountain conditions. We advocate the use of long-term ecological monitoring programs and experiments coordinated across global mountain ranges to better predict and understand the ecological consequences of loss of glaciers on mountain stream ecosystems. [ABSTRACT FROM AUTHOR]

Eutrophication is a worldwide problem. In eutrophic lakes, phosphorus release from stored sediment hinders restoration processes. The epipelon is a community that grows attached to the sediment surface and has the potential to help phosphorus retention by autotrophic organisms. This study evaluated epipelon responses to four lake restoration techniques. The responses of abiotic variables and phytoplankton biomass were also evaluated. Four simultaneous mesocosm experiments were performed in a shallow eutrophic lake. The applied techniques were aeration, flocculant, floating macrophytes, and periphyton bioreactor. Water and epipelon samples were taken on days 3, 10, 17, 27, and 60. The aeration treatment and macrophytes decreased light availability in the epipelon, which had a predominance of heterotrophic components. Flocculant and periphyton bioreactor treatments favored epipelon growth with a higher contribution of autotrophic components. Therefore, some techniques may favor the epipelon growth, while others may harm the community, resulting in less efficient restoration processes. For the complete restoration of a lacustrine ecosystem, the choice of techniques to be applied must consider the restoration and maintenance of the benthic environment. [ABSTRACT FROM AUTHOR]

Pangasius hypophthalmus is the most cultured freshwater fish by smallholder farmers in Indonesia. One of the main challenges in the production is the highly weathered and infertile soils on the bottom of a pond that influences aquaculture productivity. This work investigated the effects of pond age on soil quality, water quality, benthic algae population, and P. hypophthalmus production. We carried out a field experiment in a randomized design with pond age of 4 levels: Ponds aged 0–5 years (P1), 6–10 years (P2), 11–15 years (P3), and 16–20 years (P4). The soil is a Typic Palaeudult (Ultisol), and fish were grown for three months. The results showed that the chemical soil quality parameters and soil organic matter content increased linearly with pond age, resulting in the enhancement of water quality parameters. The increase in nitrate and phosphate directly affected benthic algae richness. These, in turn, in the highest fish production in P3, 6.4 kg/m2, specific growth rate was 3.76 %/d, survival rate of 66.7%, and feed conversion ratio of 1.8%. Linear correlation coefficients indicated that the contents of total N, total P, and organic carbon in the bottom soil of the pond were related to the increase in phosphate, nitrate, and organic matter content in pond water. Total N content, total P, carbon organic matter, C/N ratio, and CEC value in pond bottom soil significantly correlated to Pangus fish production. C/N ratio, CEC value in pond bottom soil, and CO2 concentration in pond water significantly correlated to fish survival rate. Multiple linear regression indicated that fish production was significantly related to the pond age, water NH3, total alkalinity, and soil total P and C/N ratio (R2 = 0.99, P

Benthic algae and autotrophic seston are important bases of stream food webs, and several different environmental factors may influence their biomass. We explored how benthic algae and autotrophic seston biomass (using chlorophyll-a as a proxy for algal biomass) were associated with stream temperature, channel width, canopy cover, stream cardinal orientation, benthic macroinvertebrate functional feeding group abundance, salmonid biomass, and water velocity in 16 small, fish-bearing streams in the temperate rainforest of the Olympic Peninsula in Washington State, USA, in the summer of 2020. We performed a mixed-effects regression analysis of extracted chlorophyll-a (chl-a) and then used model averaging to determine significant (α = 0.05) algal–environmental associations for benthic algae and autotrophic seston separately. We found that benthic algae chl-a concentration increased significantly with stream temperature (p = 0.0085) and decreased significantly with water velocity (p = 0.0053). For autotrophic seston, we found that chl-a concentration increased significantly with benthic macroinvertebrate predator abundance (p = 0.0007) and stream temperature (p = 0.0160). This study underscores the need to consider a broad range of environmental variables when making research and management decisions concerning stream ecology.

Abstract Animals must invest some portion of their metabolism to activities related to physiological maintenance and the remainder to processes related to the production of new biomass for growth and reproduction. Animal metabolism is fuelled by food, and the quality and quantity of food, along with the effort invested to obtain it, are fundamental to supporting populations. Biofilms are a primary basal food resource within riverine food webs, and it is thought that their nutritional value for animals decreases with age due to dynamic changes in community composition. We sought to test assumptions of spatiotemporal changes to biofilm nutritional value by assessing variations in biofilm mass and fatty acid composition in three rivers for 73 days. We also used a multi‐prong eDNA approach to characterize changes to biofilm fungal (ITS1–4), bacterial (16S), and algal (23S) community compositions. We anticipated biofilm food value to decrease with biofilm age due to shifts in composition from high‐quality green algae and diatoms to low‐quality cyanobacteria and filamentous algae. Our results partially support this contention; biofilm food value, assessed as a combination of fatty acid mass per unit area (in grams per square meter) and concentration of fatty acids (in milligrams per gram), was dynamic and peaked between 24 and 43 days following submersion. After 43 days, biofilm food value decreased. However, despite significant temporal changes in biofilm community composition and a decrease in overall lipid concentration, the proportions of different fatty acid classes among total lipids did not vary. Instead, the observed increase in the abundance of cyanobacteria and filamentous algae compared with diatoms and green algae, along with higher quantities of lipid‐poor extracellular polymeric substances (EPS), likely contributed to the reduction in overall lipid concentration relative to the biofilm dry mass. Here we present a novel approach to balance consumer energetic costs with food quality within aquatic food webs. Our results have important implications for river management and provide valuable information for the use of environmental water to support lotic ecosystems.

Cladophora is a naturally occurring benthic alga in the Great Lakes which can reach nuisance levels in the nearshore, leading to beach closures and other impacts. A monitoring program was initiated in 2012 in the eastern basin of Lake Erie to identify ecological factors driving its growth. Inflows from the Grand River, the largest river to the north shore, were generally positively associated with phosphorus concentrations in the nearshore and negatively associated with light reaching the lakebed. At the depths sampled (3 m–18 m), Cladophora was strongly influenced by light availability, and due to shading by the Grand River plume, an overall negative association was found between Cladophora biomass and phosphorus inputs. Phosphorus limitation was only observed at shallow sites farthest from the Grand River. Positive associations between dreissenid mussel coverage and both Cladophora biomass and tissue phosphorus suggest that nutrient cycling by dreissenids supports Cladophora growth. Our results indicate that i.) the Grand River has a strong influence on nearshore nutrient levels and water clarity; and ii.) Cladophora is limited by both phosphorus and light to varying degrees within the study area, although light appears to be the dominant factor, at least at these depths, years, and locations. The implication that phosphorus reductions could lead to increased Cladophora biomass by improving light conditions will need to be considered carefully against the known historical success of controlling nuisance algae through nutrient management. [ABSTRACT FROM AUTHOR]

Benthic primary production varies among lakes from 1 to 2000+ mg C m− 2 d− 1, in part owing to variations in basin shape. First principles predict an inverse correlation between benthic primary production and mean to maximum depth ratio, an index of basin shape, but reports of positive correlations suggest that current understanding is incorrect or incomplete. We develop a hypsometric (area–depth) model for littoral area that accounts for habitat disruption due to ice scouring at the lake margin. When this disruption is incorporated, the direction of the relationship between benthic primary production and depth ratio depends on water clarity—regions with clear lakes should have positive correlations, whereas regions with less water clarity should have inverse correlations. Empirical analysis of benthic primary production measurements from four eco-regions characterized by different levels of water clarity supports this prediction. Collectively, our analyses demonstrate how first principles can be used to explain heterogeneous patterns of benthic primary production at broad geographic scales. [ABSTRACT FROM AUTHOR]

Grazing fish play a role of controlling autochthonous primary production and converting it to secondary production by consuming benthic algae. Moreover, they will also provide autochthonous particulate organic matter (POM) for freshwater ecosystems by dislodging the benthic algal matrix while feeding. However, it has not been confirmed whether grazing fish induce POM production during their feeding on benthic algae. To verify this POM production during grazing by fish, short‐term (90 min) feeding experiments were conducted by introducing grazing fish Plecoglossus altivelis into indoor aquaria with benthic algal mats. We found that the fish can generate POM by feeding on benthic algae. Although POM was generated in the aquaria where the fish had not grazed on the benthic algal mats at all, the concentration of POM in the aquaria increased with the frequency of the acts of scraping benthic algae by the fish. Furthermore, we observed that the fish egested faeces which corresponded to about 44% on average of the ingested benthic organic matter. In some cases, the fish generated POM that corresponded to 88% of the removed (dislodged and ingested) benthic organic matter through their feeding and defecation. This study suggested that grazing fish have a function of providing autochthonous POM to freshwater ecosystems both via dislodging benthic algae during feeding and through egestion of consumed benthic algae. [ABSTRACT FROM AUTHOR]

Pangasius hypophthalmus is the most cultured freshwater fish by smallholder farmers in Indonesia. One of the main challenges in the production is the highly weathered and infertile soils on the bottom of a pond that influences aquaculture productivity. This work investigated the effects of pond age on soil quality, water quality, benthic algae population, and P. hypophthalmus production. We carried out a field experiment in a randomized design with pond age of 4 levels: Ponds aged 0-5 years (P1), 6-10 years (P2), 11-15 years (P3), and 16-20 years (P4). The soil is a Typic Palaeudult (Ultisol), and fish were grown for three months. The results showed that the chemical soil quality parameters and soil organic matter content increased linearly with pond age, resulting in the enhancement of water quality parameters. The increase in nitrate and phosphate directly affected benthic algae richness. These, in turn, in the highest fish production in P3, 6.4 kg/m², specific growth rate was 3.76 %/d, survival rate of 66.7%, and feed conversion ratio of 1.8%. Linear correlation coefficients indicated that the contents of total N, total P, and organic carbon in the bottom soil of the pond were related to the increase in phosphate, nitrate, and organic matter content in pond water. Total N content, total P, carbon organic matter, C/N ratio, and CEC value in pond bottom soil significantly correlated to Pangus fish production. C/N ratio, CEC value in pond bottom soil, and CO2 concentration in pond water significantly correlated to fish survival rate. Multiple linear regression indicated that fish production was significantly related to the pond age, water NH3, total alkalinity, and soil total P and C/N ratio (R² = 0.99, P < 0.001). Increased soil C/N ratio caused a negative effect on fish production. The results suggested that old-aged ponds, with proper management, act as a nutrient sink, resulting in increased aquaculture production. The implementation of the best practices will benefit the Pangus culture in the tropical environment. [ABSTRACT FROM AUTHOR]

Biological communities are structured by deterministic and stochastic factors often regarded to as community assembly processes. Deterministic factors comprise environmental filtering and biotic interactions while stochastic factors include random dispersal and ecological drift. Earlier research suggests that the relative importance of assembly processes may vary with scale. This is because biotic interactions typically occur at fine spatial scales, whereas heterogeneous environment filters species more efficiently at larger scales. The aim of this study was to investigate whether stream diatom community assembly processes varied among three spatial scales, ranging from within‐site scales to across drainage‐system scales in Finland.The smallest spatial scale was a single riffle where a local community was defined as diatoms living on a single stone. The next larger spatial scale was a drainage system while the largest spatial scale comprised the pooled data from the eight drainage systems. To test whether the diatom communities were stochastically or deterministically assembled, the null model approach based on Raup–Crick dissimilarities (βRC) was used. Redundancy analyses were also run to visualise diatom community variation and to investigate the main environmental variables associated with community variation.At the within‐riffle scale, mean and median βRC values were approaching −1, suggesting that environmental filtering shaped the communities. At the within‐drainage system scale, mean and median βRC values were also negative, but notably larger than within riffles. Across drainages, βRC values were at similar level to the within‐drainage system scale. At the riffle scale, water depth and light had the strongest influence on diatom community variation followed by current velocity along the stream. At the drainage scale, conductivity, pH, latitude, total phosphorus, and water colour had the largest influence on diatom community variation.Overall, negative Raup–Crick dissimilarities indicated that environmental filtering dominated diatom community assembly at all scales but especially at small, within‐riffle scales. There was no consistent support for limiting similarity even at the smallest scales and the effect of stochastic, dispersal‐related factors became stronger at larger scales. These results support the idea that chemical conditions in streams are decisive factors for freshwater diatom biodiversity especially at regional scales. [ABSTRACT FROM AUTHOR]

Outbreaks of crown-of-thorn starfish (COTS) have caused dramatic declines in reefs through predation on corals, but the post-bloom effects of COTS may still potentially threaten the environment and living organisms due to massive organic decomposition. This stimulation experiment showed that the decomposition of COTS debris triggered an extra mineralization process and resulted in acidifying, hypoxic, and eutrophic seawater. Consequently, the photosynthetic efficiency of coral symbionts decreased by 83%, and coral bleached after removing the stress within two days, then the coral skeleton dissolved at rates of 0.02–0.05 mg cm−2 day−1. Within two weeks, the photosynthesis and growth of benthic algae were suppressed by 27–86% and 1.5–16%, respectively. The mortality of turf algae and coralline algae indicated compromised primary productivity and limited coral recruitment, respectively. However, macroalgae, as coral competitors, became the only survivors, with increasing chlorophyll content. This study suggests a continuing decline of reefs during the collapse phase of COTS outbreaks and highlights the need for improving control strategies for the COTS population.

Understanding of the trait-based ecology of the periphytic algal community has increased in the last decade. However, the relationship between their functional diversity and ecosystem functions, such as primary production, has been speculated on, but yet not proven. Human impacts promote changes in biotic communities leading to a risk of extinction, with consequences for the functioning of aquatic ecosystems. In this study, we unraveled the associations between the taxonomic and functional components of periphytic algal diversity, stream eutrophication, and productivity patterns. Furthermore, we simulated future patterns of species extinction to predict how productivity may change when facing extinction. Primary production and taxonomic and functional diversity of the periphytic algal communities were estimated in five streams across a trophic gradient in the Ave River basin (northwest Portugal). Our results demonstrated that eutrophication led to a unimodal pattern of taxonomic diversity, while functional diversity tended to increase with increasing eutrophication. We found that only functional diversity had a positive association with primary production. The extinction estimations indicated that almost all species found in our study were at high extinction risk. When we spatially scaled our extinction simulations, we found poor-productive streams after the extirpation of a few species. However, at the regional scale, the ecosystem supports the extinction of at least 40% of species before turning into a poor-productive system. Intermediate levels of disturbance are probably beneficial for the diversity of periphytic algal communities, to a certain extent. Moreover, functionally diverse communities were more productive, and the alleged future extinction of species is likely to lead to poor-productive streams if regionally focused conservation initiatives are not implemented. We recommend that, using simulations of functional extinction, it is possible to infer how the loss of these microorganisms could alter ecosystem functioning, to better predict human impacts on aquatic ecosystems. [ABSTRACT FROM AUTHOR]

Microbes play a key role in reef dynamics, mediating the competition between scleractinian corals and benthic algae; however, major shifts in bacterial communities among coral species in response to increases in the abundance of algae are not well understood. We investigated the taxonomic composition of coral-associated microbial communities under algae-overgrowth conditions using 16S rRNA gene sequencing. The results showed that non-algal (i.e., healthy) tissue (HH) had lower bacterial abundance and diversity than tissue collected from the coral–algae interface boundary (HA) and areas of algae growth (AA). Specifically, the HA and AA samples had higher relative abundances of Saprospiraceae, Rhodobacteraceae, and Alteromonadaceae. Compared with Platygyra sp. and Montipora sp., the physiological response of Pocillopora sp. was more intense under algae-induced stress based on microbial gene function prediction. Our results indicate that algal pressure can significantly alter the microbial community structure and function of coral ecosystems. Our data thus provide new insight into the relationship between corals and their microbiome under environmental stress. [ABSTRACT FROM AUTHOR]

In open-canopied temperate rivers, periphyton plays a pivotal role by converting dissolved nutrients into food for biota. International research suggests that periphyton is particularly responsive to flow and nutrient alterations and therefore ideally suited to aiding the prediction and monitoring of the effects of altered flow regimes. Given that one of South Africa's key focus areas for river management has been the provision of flows to sustain aquatic ecosystems, this study aimed to quantify the relative importance of potential environmental drivers of periphyton, particularly flow, under different nutrient conditions in rivers of the south-western Cape. The study focused on two perennial rivers, the Berg and Molenaars Rivers. Quantitative monthly samples of periphyton biomass were collected from four sites, representative of different flow and nutrient regimes, over a 21-month sampling period between September 2007 and May 2009. The frequency of flood disturbance over the wet season was found to be the single most important driver of periphyton communities. It accounted for almost 75% of the total variation in periphyton biomass under natural flow and nutrient-poor conditions and it was therefore identified as the primary driver of periphyton communities. Its role was smaller under moderately enriched conditions and accounted for 45% of the total variation. These findings suggest that periphyton in south-western Cape rivers has great potential as a tool for predicting and monitoring the effects of altered flow regimes under different nutrient enrichment regimes. Together with some insight into community structure, the next step is to develop periphyton indicators that reflect different aspects of ecosystem integrity, for use in scenario modelling and other management aspects. [ABSTRACT FROM AUTHOR]

Periphyton is a key primary producer in shallow lakes, sensitive to global warming and changes in nutrient balances. Reduced nitrogen availability due to accelerated denitrification at higher temperatures or in response to reduced N loadings aimed to reduce the eutrophication may affect periphyton biomass and composition, to compensate for the low N availability (e.g. promoting N2-fixing). We analysed periphyton responses to N decline in 12 eutrophic shallow lake mesocosms during one year of low N compared to high N, under three temperature scenarios: ambient, A2 IPCC scenario and A2 increased by 50%. We used two submerged macrophytes (Potamogeton crispus and Elodea canadensis) and artificial imitations of these as substrates for periphyton growth. Nitrogen decline increased periphyton biomass and induced compositional changes irrespective of season, plant type, and temperature. Periphyton biomass was negatively associated to phytoplankton and positively to plant complexity. Warmer scenarios negatively affected periphyton exclusively at high N loadings. Low N conditions were associated with lower periphyton taxonomic richness, lower N2-fixing cyanobacteria biovolume and increased biovolume of large-sized chlorophytes and non-N2-fixing cyanobacteria. Our results suggest that low N conditions promoted periphyton due to a more efficient use of nutrients and improved light conditions resulting from lower phytoplankton biomass and contrasting effects of temperature. [ABSTRACT FROM AUTHOR]

The decrease in periodic scouring of pulsed flows in regulated rivers can result in algal communities dominated by filamentous algae, not available as food sources for fish and macroinvertebrates. To study the pulsed flow velocity required to scour benthic algae from natural river beds, the removal effects on the algal biomass and resistances of different species were tested in a laboratory flume at different velocities of 0.8, 1.1, 1.4, 1.7, and 2.0 m/s. The removal of total algal biomass showed a significant positive relationship with increasing velocities, which reached 22% at 2.0 m/s. The biomass removal of green algae and diatoms was higher than that of blue–green algae. The flow velocity at 1.4 m/s had a clear removal effect on filamentous algae. The velocity higher than 1.7 m/s caused a significant increase in the removal percentage of total biomass dominated by diatoms and blue–green algae. To reduce the filamentous algae and retain the diatoms and blue–green algae, a range of near bed flow velocity was suggested to be 1.4–1.7 m/s. This range could serve as a reference for required pulsed flow velocity to reduce the growth of excessive or nuisance periphyton. [ABSTRACT FROM AUTHOR]

Coastal habitats have the potential to be biodiversity hotspots that provide important ecosystem services, but also hotspots for human development and exploitation. Continued use of coastal ecosystem services requires establishing baselines that capture the present state of the benthos. This study employs habitat mapping to establish a baseline describing the spatial distribution of benthic organisms along the western coast of Placentia Bay, an Ecologically and Biologically Significant Area (EBSA) in Newfoundland, Canada. The influence of seafloor characteristics on the distribution of four dominant epifaunal assemblages and two macrophyte species were modelled using two machine learning techniques: the well-established Random Forest and the newer Light Gradient Boosting Machine. When investigating model performance, the inclusion of fine-scale (

The species composition of benthic algae changes as water phosphorus concentrations increase, and these changes can be used for ecological status assessment according to the Water Framework Directive. Natural background phosphorus concentrations in rivers and streams that are unaffected by anthropogenic impacts are usually low. Running waters draining catchments with deposits of marine clay, however, may have enhanced phosphorus concentrations, because the clay is naturally rich in apatite. Almost all clay rich areas have been cultivated for centuries, however, and fertilization has increased the soil phosphorus levels. It has, therefore, been difficult to disentangle natural from anthropogenically enhanced phosphorus in streams draining clay rich areas. We compared water phosphorus concentrations, and the Periphyton Index of Trophic Status PIT, between clay and non-clay, impacted and unimpacted rivers in Norway. We found that water phosphorus concentrations and the PIT index were higher in unimpacted clay rivers than in unimpacted non-clay rivers, indicating that natural phosphorus concentrations in clay rivers are indeed enhanced compared to rivers without deposits of marine clay. In addition, phosphate-P contributed 18–23% to total phosphorus in unimpacted clay rivers, but 33–37% in unimpacted and impacted non-clay rivers and clay rivers affected by agriculture. This indicates that the total phosphorus in unimpacted clay rivers is less bioavailable than in non-clay rivers and in impacted clay rivers. Water total phosphorus concentrations in unimpacted clay rivers significantly increased with catchment clay cover. Based on these findings, we derived new status class boundaries for the PIT index in clay rivers. Clay rivers are suggested to be assessed in only two status classes, i.e., “good or better” or “moderate or worse”, respectively. The good/moderate status class boundary for the PIT index was shown to increase with increasing catchment clay cover.

The prevalence of coral bleaching due to thermal stress has been increasing on coral reefs worldwide. While many studies have documented how corals respond to warming, fewer have focused on benthic community responses over longer time periods or on the response of non-coral taxa (e.g., crustose coralline algae, macroalgae, or turf). Here, we quantify spatial and temporal changes in benthic community composition over a decade using image analysis of permanent photoquadrats on Palmyra Atoll in the central Pacific Ocean. Eighty permanent plots were photographed annually between 2009 and 2018 on both the wave-exposed fore reef (FR, 10 m depth, n = 4 sites) and the wave-sheltered reef terrace (RT, 5 m depth, n = 4 sites) habitats. The El Niño events of 2009–2010 and 2015–2016 resulted in acute thermal stress and coral bleaching was observed at both reef habitats during these events. Across 10 yr and two bleaching events, the benthic community structure on Palmyra shows evidence of long-term stability. Communities on the RT exhibited minimal change in percent cover of the dominant functional groups, while the FR had greater variability and minor declines in hard coral cover. There was also spatial variation in the trajectory of each site through time. Coral cover decreased at some sites 1 yr following both bleaching events and was replaced by different algal groups depending on the site, yet returned to pre-bleaching levels within 2 yr. Overall, our data reveal the resilience of calcifier-dominated coral reef communities on Palmyra Atoll that have persisted over the last decade despite two bleaching events, demonstrating the capacity for these reefs to recover from and/or withstand disturbances in the absence of local stressors. [ABSTRACT FROM AUTHOR]

• Picophytobenthos are potential contributors of harmful secondary metabolites. • Water quality is potentially threatened by overwintering benthic algae. • Overwintering stage is the critical period for algae control. Overwintering benthic algae not only directly impact drinking water safety, but also affect the algae recruitment in warm spring seasons. Thus, understanding the characteristics of overwintering benthic algae can provide scientific references for formulating preventative strategies of reasonable water resource. However, they have received less attention. In this study, the spatiotemporal variation of benthic algae and their harmful secondary metabolites were studied from autumn to summer in Qingcaosha Reservoir. Benthic algae (picophytobenthos accounting for 55.42%) had a high biomass during overwintering, and the groups of overwintering benthic algae included pico-Cyanobacteria, pico-Cryptomonas, pico-Chlorophyta, pico-Diatoms, Cyanobacteria, Chlorophyta, Cryptomonas and Diatoms , which were consistent with the planktonic algae species in warm seasons. In oligotrophic or mesotrophic water bodies, micronutrients of iron and manganese were key nutrient factors influencing the biomass of benthic algae. Furthermore, picophytobenthos were important potential contributors of harmful secondary metabolites. The content of microcystins, anatoxin-a, geosmin and 2-methylisoborneol in sediment were 15.75 µg/kg·FW, 48.16 µg/kg·FW, 3.91 ng/kg·FW, and 11.76 ng/kg·FW during winter, which had potential to be released into water bodies to impact water quality. These findings indicate that water quality monitoring programs need to consider sediment in winter as a potential source of toxins and preventative measures to prevent excessive proliferation of algae should be implemented in winter. [Display omitted]. [ABSTRACT FROM AUTHOR]

Eutrophication in freshwater has become increasingly severe around the world, resulting in phytoplankton overgrowth and benthic algae reduction. Bivalves can change the density, dominant species and community structure of phytoplankton, increase available light levels, and provide physical habitats and growth conditions for benthic algae. The nutritional composition, density, community structure, and toxin of algae affect the growth, feeding, digestion, metabolism, immunity of bivalves in return. Interactions of bivalves and algae and effects of environmental factors on these interactions need a synthesis of studies, when using bivalves as a biomanipulation tool to control eutrophication. Whether bivalves can effectively suppress phytoplankton and promote benthic algae is related to the collective filtration and excretion capacity determined by size, species, population densities of bivalves, the quantity and quality of algae, and environmental factors such as temperature, dissolved oxygen, pH, and hydrodynamic. Small scale bivalve biomanipulation experiments are mostly conducted in lakes, urban ponds, and reservoirs with some success, applying in the whole ecosystem should consider more questions such as natural conditions, selection and death or reproduction of bivalves, and ecological disturbances. This review provides new considerations for technical issues such as the sustainable cultivation of bivalves and the implementation of biomanipulation in eutrophic waters.

Cyanobacterial blooms in the western basin of Lake Erie have been well studied with a focus on planktonic Microcystis and the cyanotoxin microcystin, but recent research has shown that blooms are not entirely Microcystis. Previous studies have documented other taxa in blooms capable of producing other cyanotoxins. Furthermore, benthic cyanobacteria have historically been overlooked in Lake Erie. Saxitoxin is a cyanotoxin of emerging concern in freshwater, and the sxtA gene which encodes its production has been found in the Maumee River and central basin of Lake Erie. Collectively, these points indicated that saxitoxin-producing cyanobacteria may also occur in the western basin. We utilized three sources of data to determine the spatial and temporal distribution of potential saxitoxin-producing cyanobacteria in the water column (years 2018–2022) and deployed nutrient diffusing substrata (NDS) to determine the impact of nutrients, depth, and season on potential-STX producing benthic cyanobacteria (years 2018 & 2019). The water column datasets showed that "hotspots" of sxtA lasted only a few weeks. sxtA gene copies per mL did not correlate with Dolichospermum or Aphanizomenon biovolume, which have been associated with sxtA elsewhere. In the NDS, saxitoxin (ng/cm2) and cyanobacteria chlorophyll were inversely correlated with the highest saxitoxin in September and at the deeper depth, whereas cyanobacteria chlorophyll was highest during June and at the shallower depth. This research suggests continued monitoring is needed to determine drivers of saxitoxin in the western basin, and we recommend that future Lake Erie cyanobacteria research should not solely focus on microcystins and planktonic blooms. [ABSTRACT FROM AUTHOR]

An in situ experiment determined that the addition of ammonia N-NH4+, nitrate N-NO3– and phosphate P-PO43– to an oligotrophic Andean stream significantly affected diatom composition and diversity. Over a nine-month period, fertilized and non-fertilized sections of the stream were studied for their environmental characteristics and diatom composition. Nutrient concentrations were increased three times in a downstream section with respect to those occurring naturally upstream. Alpha diversity (Shannon-Wiener [H"] and Simpson [S] indices) were determined monthly. In the non-fertilized control section, diatom diversity was significantly (p ≤ 0.05) related to water flow and P and N concentrations. In the fertilized section diversity was associated to the enhanced ammonia and phosphorus. A redundancy analysis (RDA) showed that conductivity, water flow and nutrient concentrations contributed to the diatom assemblage composition (83% along the first two axes). Achnanthidium minutissimum, Cocconeis placentula, and Epithemia sorex occurrence was related to low phosphorus concentration. Epithemia adnata var. minor, Nitzschia dissipata, and Reimeria sinuata were associated with high P concentrations, high water flow and low conductivity Navicula rynchocephala, Gomphonema parvulum, Navicula capitatoradiata, and Melosira varians were associated with high P. [ABSTRACT FROM AUTHOR]

Shifts in the stable isotope signatures of C and N in ecological materials have the potential to indicate environmental disturbances. This study examined the δ13C‰ and δ15N‰ ratios of stream water and periphyton from low-order streams in a landscape influenced by agricultural activities. Our key purpose was to assess the influence of best management practice (BMP) presence and age on C and N isotope values as a potential water-quality assessment. We collected stream water and periphyton from 19 streams within the Upper Delaware River watershed in New York, USA, in each of 4 management categories: 1) recently applied BMP treatments, 2) long-standing BMPs, 3) streams lacking BMPs, and 4) minimally disturbed reference streams. We sampled and analyzed water and periphyton for δ13C‰ and δ15N‰ in a repeated-measures design (BMP category × time) from April to November 2013. There were large seasonal differences in stream water δ13C-dissolved organic C (DIC)‰ and δ15NO3-N‰, with strong differences between reference and agricultural streams. Periphyton δ13C‰ and δ15N‰ values also differed strongly across streams draining land with agricultural activities, with 85% higher periphyton δ15N‰ signals in all agricultural categories vs reference streams. Periphyton diatom and chlorophyte taxonomic proportions showed the strongest relationship with periphyton δ13C‰ values, where diatoms were negatively associated with increasing δ13C‰. These results suggest that aqueous and periphytic stable isotopes were sensitive in detecting persistent effects of agriculture on these streams despite BMP mitigation, where nutrient (orthosphosphate, nitrite, and ammonia) levels were non-indicative. These results also suggest that BMPs may not have fully eliminated the negative impacts of agricultural stressors on water quality in impacted streams. [ABSTRACT FROM AUTHOR]

We analyzed the abundance of benthic algae in nine forested headwater watersheds in south-central Chile to study the relationship between the variability of the abundance of benthic algae and physicochemical parameters and forest cover factors. Between 10 November 2015 and 18 August 2016, we sampled benthic algae and physicochemical parameters in the streams and characterized forest cover factors in each of the study watersheds. We found that physicochemical parameters and forest cover factors have contrasting effects on abundance. More specifically, the following observations were made: (1) maximum diversity and abundance occurred in watersheds covered with Pinus radiata, (2) seasonal ranks did not influence the abundance of benthic algae, (3) benthic algae abundance is controlled by rank dissimilarities in type of vegetation, solar radiation, volume, density age, canopy openness, native forest area, plantation area and harvested area, and (4) regression analysis of genera exhibited significant variability with physicochemical parameters (water temperature, pH, ammonium, nitrate, phosphorus, solar radiation) and forest cover factors (volume, density, age, native forest area, plantation area and harvested area); however, these effects were not seen in all genera. Factors related to the benthic algae compartment showed the highest sensitivity to forest cover, emphasizing their value as biological indicators of water quality and stream ecological integrity. [ABSTRACT FROM AUTHOR]

The Samokovska River, as the most important watercourse of the Kopaonik National Park, has been poorly investigated from algological and water quality aspects. This river is not covered by the monitoring program of the Serbian Environmental Protection Agency routine. Our research performed in October 2018 aimed to present an algal diversity, ecological status assessment, and negative anthropogenic impacts threatening this river. For ecological status assessment purposes, the diatom indices phytobenthos and physico-chemical parameters of water were used. The typology and the problem of reliable assessing of the ecological status were also discussed on the example of the Samokovska River.

Climate warming, a serious environmental problem worldwide, is considered a major threat to aquatic ecosystems. A primary feature of climate warming is elevated temperatures which in shallow aquatic ecosystems might affect competition for light and nutrient between benthic algae on the sediment surface and planktonic algae in the water. The outcomes of such competition would not only affect the distribution of primary production, but also determine the fundamental character of shallow aquatic habitats as clear water or turbid water systems. We conducted a mesocosm study to evaluate the effects of elevated temperature on competition between planktonic algae and benthic algae for light and nutrients. We found that elevated temperature increased the concentrations of total nitrogen (TN), total phosphorus (TP), and total suspended solids (TSS) in overlying water and enhanced the growth of planktonic algae (measured as chlorophyll a, Chl a), but decreased light intensity and benthic algal biomass (Chl a). Our results indicate that elevated temperature can increase the growth of planktonic algae and enhance their competitive advantage over the benthic algae in shallow lakes, thereby contributing to eutrophication and a decline in water quality. These findings shed further light on the effects of global warming on aquatic ecosystems.

Because of the historical focus of limnology on pelagic processes, the factors controlling lake periphyton growth and nutrient limitation are understudied compared to the phytoplankton.We deployed nutrient‐diffusing substrata at 28 sites spanning a wide trophic status gradient in Lakes Superior and Michigan to assess periphyton biomass accrual on control substrata and the response of periphyton to single and combined phosphorus (P) and nitrogen (N) additions.Periphyton growth was unimodally related to a composite metric of site trophic status, with highest biomass at mesotrophic sites and lower growth at oligotrophic and highly eutrophic sites. Contrary to expectations, P limitation was rare. Instead, several lines of evidence pointed to primary N or N + P co‐limitation of periphyton. Limitation extent was negatively related to site trophic status, with stronger nutrient limitation at oligotrophic sites.Our results support the hypothesis that phytoplankton and periphyton biomass respond differently to nutrient enrichment and suggest that different nutrients may limit pelagic and benthic primary production, even in the same system.Our findings also support the use of periphyton as an early warning indicator of nutrient pollution and help explain why large, oligotrophic lakes may be especially susceptible to localised benthic algal blooms. [ABSTRACT FROM AUTHOR]

Oceanic islands are natural laboratories for investigating species diversity and richness patterns. Changes in abiotic parameters may induce shifts in marine biota. Seaweeds are recognized as bioindicators, though those from remote tropical islands have been rarely studied. This study updates the diversity, richness and distribution of macroalgae from Trindade, a Brazilian volcanic island located 1140 km off the coast. Biotic data, obtained in a global database and in situ and compiled in a new records list, were associated with abiotic parameters. Conservation and ecological issues were discussed in the context of the observed greater richness, expansion of the distributional range and low endemism. A total of 141 species were identified, including 60 new records and 20 taxa of filamentous cyanobacteria. The greater richness, including potential cryptogenic species, may primarily be associated with past incomplete samplings, current new techniques and combined taxonomical methods, including molecular analysis for cryptic species. However, on the macroscale, this study provides information for the re-evaluation of aspects of endemism, connections and biogeographical distribution shifts of seaweed as­semblages, considering environmental changes. In addition, this updated checklist establishes a baseline for further compara­tive studies, reinforcing the hypothesis that biogeographical isolation can be disrupted by meteorological and oceanographic shifts, altering dispersal patterns and resulting in higher ecosystems connectivity.

Microbes play a key role in reef dynamics, mediating the competition between scleractinian corals and benthic algae; however, major shifts in bacterial communities among coral species in response to increases in the abundance of algae are not well understood. We investigated the taxonomic composition of coral-associated microbial communities under algae-overgrowth conditions using 16S rRNA gene sequencing. The results showed that non-algal (i.e., healthy) tissue (HH) had lower bacterial abundance and diversity than tissue collected from the coral–algae interface boundary (HA) and areas of algae growth (AA). Specifically, the HA and AA samples had higher relative abundances of Saprospiraceae, Rhodobacteraceae, and Alteromonadaceae. Compared with Platygyra sp. and Montipora sp., the physiological response of Pocillopora sp. was more intense under algae-induced stress based on microbial gene function prediction. Our results indicate that algal pressure can significantly alter the microbial community structure and function of coral ecosystems. Our data thus provide new insight into the relationship between corals and their microbiome under environmental stress.

The decrease in periodic scouring of pulsed flows in regulated rivers can result in algal communities dominated by filamentous algae, not available as food sources for fish and macroinvertebrates. To study the pulsed flow velocity required to scour benthic algae from natural river beds, the removal effects on the algal biomass and resistances of different species were tested in a laboratory flume at different velocities of 0.8, 1.1, 1.4, 1.7, and 2.0 m/s. The removal of total algal biomass showed a significant positive relationship with increasing velocities, which reached 22% at 2.0 m/s. The biomass removal of green algae and diatoms was higher than that of blue–green algae. The flow velocity at 1.4 m/s had a clear removal effect on filamentous algae. The velocity higher than 1.7 m/s caused a significant increase in the removal percentage of total biomass dominated by diatoms and blue–green algae. To reduce the filamentous algae and retain the diatoms and blue–green algae, a range of near bed flow velocity was suggested to be 1.4–1.7 m/s. This range could serve as a reference for required pulsed flow velocity to reduce the growth of excessive or nuisance periphyton.

Abstract Explaining spatiotemporal variability in metacommunities is challenging because conducting empirical studies that link mechanisms across scales is difficult. We developed a stochastic model of epilithic algal succession in streams to better understand the underlying interactions that drive patch dynamics at three levels of spatial hierarchy: patch, channel habitat, and reach. The state of an algal patch is specified by one of nine community types, which are defined by growth form. Ninety‐two empirical data sets of epilithic succession were used to estimate Markov transition probabilities among patch types as functions of inputs for light, nutrients, and current. Two additional probability matrices determine the effects of herbivory and disturbance based on user inputs. Testing model predictions of patch composition against independent empirical data indicated good correspondence based on resemblance metrics. Early in succession, most patches were occupied by prostrate and erect diatoms. These persisted under low light and nutrient conditions. Motile and stalked diatom patches characterized later stages when resources were moderate. Succession proceeded to mostly filamentous green algal patches under high resource levels. Sensitivity simulations indicated light most affected succession. Herbivory and disturbance increased the probability of prostrate diatom patches. We then used the model to examine how changes in abiotic and biotic parameters affect patch dynamics at different scales. Changes in nutrients or light affected patch diversity differently at the habitat vs. reach scale. Interactions with local resource levels within a channel habitat determined its alpha diversity. The proportion of channel habitat types within a reach, and their collective response to changes, determined beta diversity. Patch diversity within channel habitats generated by herbivory followed the predation hypothesis only when nutrients were low. At the reach scale, herbivory always increased patch similarity among channel habitats, lowering beta diversity. Diversity within channel habitats followed the intermediate disturbance hypothesis for a variety of habitats. Effects of disturbance on beta diversity at the reach scale depended on channel habitat heterogeneity. The stability of patches at the reach scale was highest when disturbance created high patch diversity, supporting the insurance hypothesis. The ideas generated can improve stream bioassessment methods and provide insight into mechanisms underlying patch dynamics in other ecosystems.

Restoring aquatic ecosystems is still at an early stage and the outcomes of the remediation techniques used are often not reported, which limit opportunities to learn and further improve these methods. One common remediation technique in urban areas is daylighting, which involves the re‐opening of once buried streams with the aim of restoring ecosystem functions and services. In this study, we monitored the colonization of two important aquatic communities, benthic algae and macroinvertebrates, and assessed the nutrient retention capacity of a recently daylighted urban stream in the city of Oslo, Norway. The approach used involved transforming a buried channel into an open stream consisting of interconnected riffles and ponds seeded with aquatic and terrestrial plants. Benthic algal and macroinvertebrate communities begun to colonize the restored stretch within a relatively short time, 9 months following daylighting. The dynamics of the two aquatic communities differed, indicating that spatial processes are influential in determining the establishment of benthic algae, whereas time is more important for macroinvertebrate communities. The observed net nutrient retention from the daylighted stretch for phosphate, total nitrogen, total phosphorus, and calcium were 226, 128, 38 and 14%, respectively. However, the efficiency of the daylighted stretch to sequester nutrients was limited by the lack of controlling nutrient inputs from diffuse sources. This highlights the importance of addressing the influence of broader‐scale processes, extending beyond the boundaries of the restored reach, which can otherwise demise the success of daylighting. [ABSTRACT FROM AUTHOR]

Explaining spatiotemporal variability in metacommunities is challenging because conducting empirical studies that link mechanisms across scales is difficult. We developed a stochastic model of epilithic algal succession in streams to better understand the underlying interactions that drive patch dynamics at three levels of spatial hierarchy: patch, channel habitat, and reach. The state of an algal patch is specified by one of nine community types, which are defined by growth form. Ninety‐two empirical data sets of epilithic succession were used to estimate Markov transition probabilities among patch types as functions of inputs for light, nutrients, and current. Two additional probability matrices determine the effects of herbivory and disturbance based on user inputs. Testing model predictions of patch composition against independent empirical data indicated good correspondence based on resemblance metrics. Early in succession, most patches were occupied by prostrate and erect diatoms. These persisted under low light and nutrient conditions. Motile and stalked diatom patches characterized later stages when resources were moderate. Succession proceeded to mostly filamentous green algal patches under high resource levels. Sensitivity simulations indicated light most affected succession. Herbivory and disturbance increased the probability of prostrate diatom patches. We then used the model to examine how changes in abiotic and biotic parameters affect patch dynamics at different scales. Changes in nutrients or light affected patch diversity differently at the habitat vs. reach scale. Interactions with local resource levels within a channel habitat determined its alpha diversity. The proportion of channel habitat types within a reach, and their collective response to changes, determined beta diversity. Patch diversity within channel habitats generated by herbivory followed the predation hypothesis only when nutrients were low. At the reach scale, herbivory always increased patch similarity among channel habitats, lowering beta diversity. Diversity within channel habitats followed the intermediate disturbance hypothesis for a variety of habitats. Effects of disturbance on beta diversity at the reach scale depended on channel habitat heterogeneity. The stability of patches at the reach scale was highest when disturbance created high patch diversity, supporting the insurance hypothesis. The ideas generated can improve stream bioassessment methods and provide insight into mechanisms underlying patch dynamics in other ecosystems. [ABSTRACT FROM AUTHOR]

A simplified stochastic control model for optimization of logistic dynamics with the control-dependent carrying capacity, which is motivated by a recent algae population management problem in the river environment, is presented. Solving the optimization problem reduces to finding a solution to a non-local first-order differential equation called tt–Jacobi–Bellman (HJB) equation. It is shown that the HJB equation has a unique viscosity solution and that the solution can be approximated with a finite difference scheme. Asymptotic estimates of the solution and the optimal control are derived and compared with numerical solutions. Finally, parameter dependence of the optimal control is examined numerically with implications to river environmental management.

Aim: In this study, we investigated whether environmental factors can effectively control the spatial distribution of various benthic algae and examined the critical ecological impacts of algae on corals across the South China Sea (SCS). Relationships between benthic algae and environmental factors were assessed, and potential ecological impacts of algae on coral communities were evaluated across spatial scales. Location: A total of 104 sites at 12 coral reefs in four coral reef regions (CRRs) of the SCS (latitude range of 9–22° N). Taxa: Turf algae, macroalgae (including fleshy macroalgae and Halimeda), crustose coralline algae (CCA), coral and juvenile coral. Methods: Using diver‐based surveys (2015–2018), we investigated four CRRs with different reef distance to mainland (RDM) across the SCS. We obtained field data on benthic algal composition and cover, coral cover and diversity, and juvenile coral density. We also measured and collected the environmental factors (including seawater environmental parameters and reef fish diversity). Results: The cover of turf algae and CCA gradually decreased and increased, respectively, with an increase in RDM, which had a strong relationship with the gradually changing environmental factors. Random forest models suggested that nutrients, reef fish diversity, seawater transparency and temperature were the most important factors for predicting turf algae and CCA cover. Linear regression analyses showed a significant relationship between the turf algae, macroalgae, and CCA covers, and juvenile coral density. Main conclusions: Our results showed that gradually changing environmental factors were correlated with the spatial distributions of turf algae and CCA. However, the natural biophysical relationships between macroalgae and environmental factors may be disrupted by turf algal overgrowth and nutrient subsidies. Increases in all benthic algal groups significantly impacted coral recruitment, highlighting the critical role of benthic algae in determining the recovery trajectory of the Indo‐Pacific reefs that are threatened by human activities. [ABSTRACT FROM AUTHOR]