4 results on '"Benoît Ury"'
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2. The promiscuous binding pocket of SLC35A1 ensures redundant transport of CDP-ribitol to the Golgi
- Author
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Benoît Ury, Guido T. Bommer, Matthew R. Whorton, Sven Potelle, and Francesco Caligiore
- Subjects
Models, Molecular ,0301 basic medicine ,Glycan ,Glycosylation ,Golgi Apparatus ,PNA, peanut agglutinin ,Ribitol ,complex mixtures ,Biochemistry ,dystroglycan ,03 medical and health sciences ,symbols.namesake ,chemistry.chemical_compound ,Cytosine nucleotide ,Humans ,MAL II, Maackia amurensis lectin II ,Binding site ,Dystroglycans ,Molecular Biology ,Binding Sites ,030102 biochemistry & molecular biology ,biology ,Nucleoside Diphosphate Sugars ,LBB, laminin-binding buffer ,Nucleotide transport ,FKRP, fukutin-related protein ,Biological Transport ,Editors' Pick ,FKTN, fukutin ,Cell Biology ,Golgi apparatus ,NST, nucleotide sugar transporter ,Mammalian Glycan ,Cell biology ,carbohydrates (lipids) ,ribitol ,HEK293 Cells ,030104 developmental biology ,chemistry ,sialic acid ,Nucleotide Transport Proteins ,nucleotide transport ,symbols ,biology.protein ,SLC35A4 ,SLC35A1 ,Research Article - Abstract
The glycoprotein α-dystroglycan helps to link the intracellular cytoskeleton to the extracellular matrix. A unique glycan structure attached to this protein is required for its interaction with extracellular matrix proteins such as laminin. Up to now, this is the only mammalian glycan known to contain ribitol phosphate groups. Enzymes in the Golgi apparatus use CDP-ribitol to incorporate ribitol phosphate into the glycan chain of α-dystroglycan. Since CDP-ribitol is synthesized in the cytoplasm, we hypothesized that an unknown transporter must be required for its import into the Golgi apparatus. We discovered that CDP-ribitol transport relies on the CMP-sialic acid transporter SLC35A1 and the transporter SLC35A4 in a redundant manner. These two transporters are closely related, but bulky residues in the predicted binding pocket of SLC35A4 limit its size. We hypothesized that the large binding pocket SLC35A1 might accommodate the bulky CMP-sialic acid and the smaller CDP-ribitol, whereas SLC35A4 might only accept CDP-ribitol. To test this, we expressed SLC35A1 with mutations in its binding pocket in SLC35A1 KO cell lines. When we restricted the binding site of SLC35A1 by introducing the bulky residues present in SLC35A4, the mutant transporter was unable to support sialylation of proteins in cells but still supported ribitol phosphorylation. This demonstrates that the size of the binding pocket determines the substrate specificity of SLC35A1, allowing a variety of cytosine nucleotide conjugates to be transported. The redundancy with SLC35A4 also explains why patients with SLC35A1 mutations do not show symptoms of α-dystroglycan deficiency.
- Published
- 2021
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3. Influence of different partial pressures of oxygen during continuous hypothermic machine perfusion in a pig kidney ischemia-reperfusion autotransplant model
- Author
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Antoine Buemi, Selda Aydin, Martine De Meyer, Jay Nath, Pierre Gianello, Tom Darius, Michel Mourad, Benoît Ury, T. Smith, Kamlesh Patel, Christian Ludwig, Chantal Dessy, Marie-Christine Many, Julie Craps, Martial Vergauwen, Virginie Joris, UCL - SSS/IREC/CHEX - Pôle de chirgurgie expérimentale et transplantation, UCL - (SLuc) Service de chirurgie et transplantation abdominale, UCL - SSS/IREC/MORF - Pôle de Morphologie, UCL - SSS/IREC/NEFR - Pôle de Néphrologie, UCL - (SLuc) Service d'anatomie pathologique, UCL - SSS/IREC/FATH - Pôle de Pharmacologie et thérapeutique, and UCL - SSS/IREC - Institut de recherche expérimentale et clinique
- Subjects
medicine.medical_specialty ,Time Factors ,animal structures ,Partial Pressure ,Sus scrofa ,Ischemia ,Cold storage ,030230 surgery ,Kidney ,Transplantation, Autologous ,03 medical and health sciences ,Random Allocation ,0302 clinical medicine ,Hypothermia, Induced ,Internal medicine ,medicine ,Animals ,Kidney surgery ,Warm Ischemia ,Transplantation ,Machine perfusion ,Chemistry ,Cold Ischemia ,Kidney metabolism ,Oxygenation ,Equipment Design ,Hypothermia ,medicine.disease ,Kidney Transplantation ,Oxygen ,Perfusion ,Creatinine ,Models, Animal ,Cardiology ,030211 gastroenterology & hepatology ,Female ,medicine.symptom ,Energy Metabolism ,Biomarkers - Abstract
Background The optimal perfusate partial pressure of oxygen (PO2) during hypothermic machine perfusion (HMP) is unknown. The aims of the study were to determine the functional, metabolic, structural, and flow dynamic effects of low and high perfusate PO2 during continuous HMP in a pig kidney ischemia-reperfusion autotransplant model. Methods The left kidneys of a ±40 kg pigs were exposed to 30 minutes of warm ischemia and randomized to receive 22-hour HMP with either low perfusate PO2 (30% oxygen, low oxygenated HMP [HMPO2]) (n = 8) or high perfusate PO2 (90% oxygen, HMPO2high) (n = 8), before autotransplantation. Kidneys stored in 22-hour standard HMP (n = 6) and 22-hour static cold storage (n = 6) conditions served as controls. The follow-up after autotransplantation was 13 days. Results High PO2 resulted in a 3- and 10-fold increase in perfusate PO2 compared with low HMPO2 and standard HMP, respectively. Both HMPO2 groups were associated with superior graft recovery compared with the control groups. Oxygenation was associated with a more rapid and sustained decrease in renal resistance. While there was no difference in functional outcomes between both HMPO2 groups, there were clear metabolic differences with an inverse correlation between oxygen provision and the concentration of major central metabolites in the perfusion fluid but no differences were observed by oxidative stress and metabolic evaluation on preimplantation biopsies. Conclusions While this animal study does not demonstrate any advantages for early graft function for high perfusate PO2, compared with low perfusate PO2, perfusate metabolic profile analysis suggests that aerobic mechanism is better supported under high perfusate PO2 conditions.
- Published
- 2019
4. ISPD produces CDP-ribitol used by FKTN and FKRP to transfer ribitol phosphate onto α-dystroglycan
- Author
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Jennifer Bolsée, Isabelle Breloy, Guido T. Bommer, Jean-Marie Cuisset, Ammi Grahn, Nathalie Seta, Susana Quijano-Roy, Isabelle Gerin, Julie Graff, Céline Bouchet-Séraphin, Mathias Halbout, Giulio G. Muccioli, Benoît Ury, Emile Van Schaftingen, Ivana Dabaj, Didier Vertommen, UCL - SSS/DDUV - Institut de Duve, and UCL - SSS/LDRI - Louvain Drug Research Institute
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Male ,0301 basic medicine ,Glycosylation ,Ribose ,Muscle Fibers, Skeletal ,General Physics and Astronomy ,law.invention ,Mice ,chemistry.chemical_compound ,law ,Dystroglycans ,chemistry.chemical_classification ,Multidisciplinary ,ATP synthase ,Nucleoside Diphosphate Sugars ,musculoskeletal system ,Nucleotidyltransferases ,Biochemistry ,Recombinant DNA ,lipids (amino acids, peptides, and proteins) ,musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,Glycan ,animal structures ,Science ,Biology ,Ribitol ,complex mixtures ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Animals ,Humans ,Pentosyltransferases ,fungi ,HEK 293 cells ,Membrane Proteins ,Proteins ,General Chemistry ,Fukutin ,Rats ,Mice, Inbred C57BL ,carbohydrates (lipids) ,HEK293 Cells ,030104 developmental biology ,Enzyme ,chemistry ,biology.protein - Abstract
Mutations in genes required for the glycosylation of α-dystroglycan lead to muscle and brain diseases known as dystroglycanopathies. However, the precise structure and biogenesis of the assembled glycan are not completely understood. Here we report that three enzymes mutated in dystroglycanopathies can collaborate to attach ribitol phosphate onto α-dystroglycan. Specifically, we demonstrate that isoprenoid synthase domain-containing protein (ISPD) synthesizes CDP-ribitol, present in muscle, and that both recombinant fukutin (FKTN) and fukutin-related protein (FKRP) can transfer a ribitol phosphate group from CDP-ribitol to α-dystroglycan. We also show that ISPD and FKTN are essential for the incorporation of ribitol into α-dystroglycan in HEK293 cells. Glycosylation of α-dystroglycan in fibroblasts from patients with hypomorphic ISPD mutations is reduced. We observe that in some cases glycosylation can be partially restored by addition of ribitol to the culture medium, suggesting that dietary supplementation with ribitol should be evaluated as a therapy for patients with ISPD mutations., Mutations in genes required for the glycosylation of α-dystroglycan lead to dystroglycanopathies. Here, the authors show that three of these enzymes (ISPD, FKTN and FKRP) work together to attach ribitol phosphate to α-dystroglycan.
- Published
- 2016
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