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Ribonucleotide reductases (RNRs) catalyze the de novo conversion of nucleotides to deoxynucleotides in all organisms, controlling their relative ratios and abundance. In doing so, they play an important role in fidelity of DNA replication and repair. RNRs' central role in nucleic acid metabolism has resulted in five therapeutics that inhibit human RNRs. In this review, we discuss the structural, dynamic, and mechanistic aspects of RNR activity and regulation, primarily for the human and Escherichia coli class Ia enzymes. The unusual radical-based organic chemistry of nucleotide reduction, the inorganic chemistry of the essential metallo-cofactor biosynthesis/maintenance, the transport of a radical over a long distance, and the dynamics of subunit interactions all present distinct entry points toward RNR inhibition that are relevant for drug discovery. We describe the current mechanistic understanding of small molecules that target different elements of RNR function, including downstream pathways that lead to cell cytotoxicity. We conclude by summarizing novel and emergent RNR targeting motifs for cancer and antibiotic therapeutics.

Parkinsons disease (PD) and Multiple System Atrophy (MSA) are clinically distinctive diseases that feature a common neuropathological hallmark of aggregated α-synuclein. Little is known about how differences in α-synuclein aggregate structure affect disease phenotype. Here, we amplified α-synuclein aggregates from PD and MSA brain extracts and analyzed the conformational properties using fluorescent probes, NMR spectroscopy and electron paramagnetic resonance. We also generated and analyzed several in vitro α-synuclein polymorphs. We found that brain-derived α-synuclein fibrils were structurally different to all of the in vitro polymorphs analyzed. Importantly, there was a greater structural heterogeneity among α-synuclein fibrils from the PD brain compared to those from the MSA brain, possibly reflecting on the greater variability of disease phenotypes evident in PD. Our findings have significant ramifications for the use of non-brain-derived α-synuclein fibrils in PD and MSA studies, and raise important questions regarding the one disease-one strain hypothesis in the study of α-synucleinopathies.

Electron spin dynamics during microwave irradiation are of increasing interest in electron paramagnetic resonance (EPR) spectroscopy, as locking electron spins into a dressed state finds applications in EPR and dynamic nuclear polarization (DNP) experiments. Here, we show that these dynamics can be probed by modern pulse EPR experiments that use arbitrary waveform generators to produce shaped microwave pulses. We employ phase-modulated pulses to measure Rabi nutations, echoes, and echo decays during spin locking of a BDPA radical at 94 GHz EPR frequency. Depending on the initial state of magnetization, different types of echos are observed. We analyze these distinct coherence transfer pathways and measure the decoherence time T 2ρ, which is a factor 3–4 longer than T m. Furthermore, we use chirped Fourier transform EPR to detect the evolution of magnetization profiles. Our experimental results are well reproduced using a simple density matrix model that accounts for T 2ρ relaxation in the spin lock (tilted) frame. The results provide a starting point for optimizing EPR experiments based on hole burning, such as electron-nuclear double resonance or ELDOR-detected NMR. [ABSTRACT FROM AUTHOR]

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Phosphorus‐centered disbiradicals, in which the radical sites exist as individual spin doublets with weak spin‐spin interaction have not been known so far. Starting from monoradicals of the type [⋅P(μ‐NTer)2P−R], we have now succeeded in linking two such monoradical phosphorus centers by appropriate choice of a linker. To this end, biradical [⋅P(μ‐NTer)2P⋅] (1) was treated with 1,6‐dibromohexane, affording the brominated species {Br[P(μ‐NTer)]2}2C6H12 (3). Subsequent reduction with KC8 led to the formation of the disbiradical {⋅[P(μ‐NTer)]2}2C6H12 (4) featuring a large distance between the radical phosphorus sites in the solid state and formally the highest biradical character observed in a P‐centered biradical so far, approaching 100 %. EPR spectroscopy revealed a three‐line signal in solution with a considerably larger exchange interaction than would be expected from the molecular structure of the single crystal. Quantum chemical calculations revealed a highly dynamic conformational space; thus, the two radical sites can approach each other with a much smaller distance in solution. Further reduction of 4 resulted in the formation of a potassium salt featuring the first structurally characterized P‐centered distonic radical anion (5−). Moreover, 4 could be used in small molecule activation. [ABSTRACT FROM AUTHOR]

The hydration structure of nitroxide radicals in aqueous solutions is elucidated by advanced 17O hyperfine (hf) spectroscopy with support of quantum chemical calculations and MD simulations. A piperidine and a pyrrolidine‐based nitroxide radical are compared and show clear differences in the preferred directionality of H‐bond formation. We demonstrate that these scenarios are best represented in 17O hf spectra, where in‐plane coordination over σ ${\sigma }$ ‐type H‐bonding leads to little spin density transfer on the water oxygen and small hf couplings, whereas π ${{\rm \pi }}$ ‐type perpendicular coordination generates much larger hf couplings. Quantitative analysis of the spectra based on MD simulations and DFT predicted hf parameters is consistent with a distribution of close solvating water molecules, in which directionality is influenced by subtle steric effects of the ring and the methyl group substituents. [ABSTRACT FROM AUTHOR]

Dynamic nuclear polarization (DNP) is a method to enhance the low sensitivity of nuclear magnetic resonance (NMR) via spin polarization transfer from electron spins to nuclear spins. In the liquid state, this process is mediated by fast modulations of the electron-nuclear hyperfine coupling and its efficiency depends strongly on the applied magnetic field. A peculiar case study is triphenylphosphine (PPh3) dissolved in benzene and doped with BDPA radical because it gives 31P-NMR signal enhancements of two orders of magnitude up to a magnetic field of 14.1 T. Here we show that the large 31P enhancements of BDPA/PPh3 in benzene at 1.2 T (i) decrease when the moieties are dissolved in other organic solvents, (ii) are strongly reduced when using a nitroxide radical, and (iii) vanish with pentavalent 31P triphenylphosphine oxide. Those experimental observations are rationalized with numerical calculations based on density functional theory that show the tendency of BDPA and PPh3 to form a weak complex via non-covalent interaction that leads to large hyperfine couplings to 31P (ΔAiso ≥ 13 MHz). This mechanism is hampered in other investigated systems. The case study of 31P-DNP in PPh3 is an important example that extends the current understanding of DNP in the liquids state: non-covalent interactions between radical and target can be particularly effective to obtain large NMR signal enhancements. [ABSTRACT FROM AUTHOR]

The interaction of 2'-azido-2'-deoxyuridine-5'-diphosphate (N(sub 3)UDP) with ribonucleotide reductase (RNR) results in the loss of the diiron tyrosyl radical (Y.) in ribonucleotide reductase 2 and formation of a nitrogen-centered radical (N.) covalently attached to C225(R-S-N.-X) in the active site of ribonucleotide reductase 1. This interaction with respect to N. showed that N. is covalently attached to the nucleotide through either the oxygen of the 3'-OH (R-S-N.-O-R') or the 3'-C (R-S-N.-C-OH).

High frequency time domain EPR and ENDOR spectroscopy were used to study the tyrosyl radical-diiron cofactor in ribonucleotide reductase from yeast.

Research is presented describing the synthesis of CdSe quantum dots by high-temperature pyrolysis in trioctylphosphine oxide. The need for specially designed precursors to incorporate low manganese levels is identified.