1. Copy number variations of TBK1 in Australian patients with primary open-angle glaucoma
- Author
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Tiger Zhou, Stuart L. Graham, Kathryn P. Burdon, Mark Chehade, Mona S Awadalla, David A. Mackey, Bronwyn Ridge, Owen M. Siggs, Richard Holmes, Alex W. Hewitt, Benjamin E. Roos, John H. Fingert, Emmanuelle Souzeau, Jamie E Craig, Anna Galanopolous, and Simon D.M. Chen
- Subjects
Adult ,Male ,medicine.medical_specialty ,genetic structures ,Open angle glaucoma ,DNA Copy Number Variations ,Glaucoma ,Biology ,Protein Serine-Threonine Kinases ,Real-Time Polymerase Chain Reaction ,Article ,Ophthalmology ,Normal tension glaucoma ,Gene duplication ,medicine ,Humans ,Copy-number variation ,Optineurin ,Aged ,Retrospective Studies ,Comparative Genomic Hybridization ,Australia ,Retrospective cohort study ,Middle Aged ,medicine.disease ,eye diseases ,Pedigree ,Case-Control Studies ,Mutation ,Female ,sense organs ,Glaucoma, Open-Angle ,Comparative genomic hybridization - Abstract
Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.
- Published
- 2014