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Coxiella burnetii is the bacterium responsible for Q fever, a worldwide zoonosis. Ruminants, especially cattle, are recognized as the most important source of human infections. Although a great heterogeneity between shedder cows has been described, no previous studies have determined which features such as shedding route and duration or the quantity of bacteria shed have the strongest impact on the environmental contamination and thus on the zoonotic risk. Our objective was to identify key parameters whose variation highly influences C. burnetii spread within a dairy cattle herd, especially those related to the heterogeneity of shedding. To compare the impact of epidemiological parameters on different dynamical aspects of C. burnetii infection, we performed a sensitivity analysis on an original stochastic model describing the bacterium spread and representing the individual variability of the shedding duration, routes and intensity as well as herd demography. This sensitivity analysis consisted of a principal component analysis followed by an ANOVA. Our findings show that the most influential parameters are the probability distribution governing the levels of shedding, especially in vaginal mucus and faeces, the characteristics of the bacterium in the environment (i.e. its survival and the fraction of bacteria shed reaching the environment), and some physiological parameters related to the intermittency of shedding (transition probability from a non-shedding infected state to a shedding state) or to the transition from one type of shedder to another one (transition probability from a seronegative shedding state to a seropositive shedding state). Our study is crucial for the understanding of the dynamics of C. burnetii infection and optimization of control measures. Indeed, as control measures should impact the parameters influencing the bacterium spread most, our model can now be used to assess the effectiveness of different control strategies of Q fever within dairy cattle herds.

National audience; Decisions in animal health management depend on a large variety of situations and problems. To illustrate this, seven major diseases of dairy herds were analysed to identify the main limiting factors for the effectiveness of the current control schemes and the perspectives toward better control in the field. Regarding intramammary infections, research directions focus on the development of multivalent vaccines, tools to better select cows to be treated with antibiotics, on-farm intervention methodology and the enhancement of animal resistance via a contribution of genome-wide selection techniques. For gastro-intestinal strongyloses, priority was also given to rational and selective anthelmintic treatments, genetic improvement of innate resistance seeming less a priority than for small ruminants. The control of Mortellaro disease, a locomotor disorder, should receive attention to develop alternatives because of the forecasted ban of the principal disinfectants used for footbaths. Q fever control can be reached by prolonged vaccination of the whole herd and adequate management of parturition hygiene. Johne disease is probably a good candidate disease for genomic selection, especially given the absence of treatment and very effective vaccine and the presence of a quite promising background of resistance/resilience. Infection by BVDV seems to be controllable by only sanitary measures, associated or not with a vaccination scheme. Eradication of exotic serotypes of BTV can be reached by targeted surveillance and quick and massive vaccination. Specificities in etiology, epidemiology and control techniques of the diseases under study do not quite allow drawing generic conclusions.; Les décisions de gestion de la santé animale correspondent à un large éventail de situations et de problèmes. Illustrant ce constat, sept maladies majeures des troupeaux bovins laitiers sont examinées pour identifier les facteurs les plus courants limitant l’efficacité des plans de maîtrise ainsi que les perspectives d’amélioration de la maîtrise sur le terrain. Pour les infections intra-mammaires, la recherche vise à la mise au point de vaccins multivalents, le ciblage des vaches à traiter par les antibactériens, la méthodologie des interventions en ferme, et l’augmentation de la résistance innée par la sélection génomique. Pour les strongyloses gastro-intestinales, les recherches prioritaires s’orientent aussi vers les stratégies de traitement anthelminthique raisonné et ciblé, la voie génétique semblant moins prioritaire que chez les petits ruminants. La maîtrise de la maladie de Mortellaro, affection de l’appareil locomoteur, ne pourra plus recourir aux désinfectants classiquement utilisés dans les pédiluves et des approches alternatives sont nécessaires. La maîtrise de la fièvre Q est à rechercher par la vaccination de l’ensemble du troupeau sur plusieurs années et l’hygiène de la parturition. La paratuberculose pourrait à terme être maîtrisée par la sélection génomique, en raison de l’absence de traitement et de vaccin efficaces et de l’existence de bases génétiques de résistance/résilience prometteuses. La maîtrise de l’infection par le virus BVDV semble pouvoir être atteinte par des mesures sanitaires combinées ou non avec la vaccination. La quasi-éradication des sérotypes exotiques du virus de la fièvre catarrhale ovine pourrait être obtenue par la surveillance ciblée et la vaccination massive et rapide. Les spécificités de l’étiologie, de l’épidémiologie et des moyens de maîtrise des maladies étudiées n’autorisent guère de conclusions génériques

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11 ref. *INRA Station de Génétique quantitative et appliquée 78352 Jouy-en-Josas (FRA) Diffusion du document : INRA Station de Génétique quantitative et appliquée 78352 Jouy-en-Josas (FRA); International audience

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The study described in this thesis focusses on the health related culling decision in dairy cows, with special attention to the role of farmer's attitude in this process. This thesis is composed of four parts. In the first part, the associations between diseases and culling in dairy cows were reviewed and discussed from the literature. In the second part, the impact of disease on longevity was assessed in terms of risk of culling and in terms of reduced length of productive life. The third part focussed on methodological issues, and proposed a method accounting for within-cow-dependency of lactations to assess diseases as risk factors for culling. The differences between farmers in their culling decision process were specifically studied in the fourth part through the assessment of the associations between farmers' culling decisions and management styles. Applications of the present study and perspectives in the field of herd health management were discussed.

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