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Soil water status, which refers to the wetness or dryness of soils, is crucial for the productivity of agroecosystems, as it determines nutrient cycling and uptake physically via transport, biologically via the moisture‐dependent activity of soil flora, fauna, and plants, and chemically via specific hydrolyses and redox reactions. Here, we focus on the dynamics of nitrogen (N), phosphorus (P), and sulfur (S) and review how soil water is coupled to the cycling of these elements and related stoichiometric controls across different scales within agroecosystems. These scales span processes at the molecular level, where nutrients and water are consumed, to processes in the soil pore system, within a soil profile and across the landscape. We highlight that with increasing mobility of the nutrients in water, water‐based nutrient flux may alleviate or even exacerbate imbalances in nutrient supply within soils, for example, by transport of mobile nutrients towards previously depleted microsites (alleviating imbalances), or by selective loss of mobile nutrients from microsites (increasing imbalances). These imbalances can be modulated by biological activity, especially by fungal hyphae and roots, which contribute to nutrient redistribution within soils, and which are themselves dependent on specific, optimal water availability. At larger scales, such small‐scale effects converge with nutrient inputs from atmospheric (wet deposition) or nonlocal sources and with nutrient losses from the soil system towards aquifers. Hence, water acts as a major control in nutrient cycling across scales in agroecosystems and may either exacerbate or remove spatial disparities in the availability of the individual nutrients (N, P, S) required for biological activity. [ABSTRACT FROM AUTHOR]

The application of lime and mineral fertiliser is known to mitigate soil acidification and improve soil quality in improved grasslands. However, the long-term effect of simultaneous lime and fertiliser amendments on soil carbon (C) and sulphur (S) cycling is still poorly understood. To examine if soil pH or nutrient availability are the dominant factors regulating C and S cycling, we evaluated the biodegradation of methionine (organic S), gross S transformation, and microbial S utilisation using 35S and 14C dual-labelling. Soil samples (0–10 cm) were collected from one unfertilised control and five annual limed (Ca) treatments with or without nitrogen (N), phosphorus (P), potassium (K) and sulphur (S) fertilisers (Ca, CaN, CaNP, CaNPKCl, CaNPK 2 SO 4) in an 82-year-old upland grassland experiment in Rengen, Germany. Long-term lime application increased soil pH values but significantly (p < 0.05) decreased soil organic C content. Fertilisation had no significant effect on microbial utilisation of 35S-labelled methionine, while microbial immobilisation of 35SO 4 2− in the limed soils was significantly reduced compared to the control. This is attributed to either the increased soil pH or decreased C availability after liming. Microbial carbon use efficiency (CUE) was significantly higher in soils with applied P fertiliser (i.e., CaNP: 0.66 ± 0.02, CaNPKCl: 0.68 ± 0.02, CaNPK 2 SO 4 : 0.65 ± 0.01) compared to the CaN treatment (0.58 ± 0.01). Moreover, compared to CaN, CaNP and CaNPKCl treatments significantly increased gross S turnover, while no significant effects were observed in the CaNPK 2 SO 4 treatment. Soil P deficits decreased microbial CUE and S bioavailability. Although P fertiliser addition alleviated microbial P limitation when N fertiliser was added, S fertiliser (CaNPK 2 SO 4) present constrained S transformation rates. Overall, the importance of P availability for global S cycling in grasslands is shown, especially under N-enrichment conditions. However, the subsequent potential for C loss from long-term liming should be carefully considered in grassland management. Long-term lime plus mineral nutrients fertilisers have a negative effect on microbial inorganic S immobilisation, this is attributed to either the decreased C availability or the increased soil pH from lime addition. While the effects of long-term lime plus mineral nutrients fertilisers on gross S fluxes and carbon use efficiency (CUE) depend on how the mineral nutrient is applied, long-term lime with imbalanced nutrient (e.g. sole N) resulted in the decrease of CUE and gross S transformation because of the low P availability. Long-term lime with both N and P nutrients leads to the increase of CUE and gross S transformation, which is mainly due to high P availability. [Display omitted] • Long-term lime application significantly decreased soil organic carbon content. • Lime plus N (CaN) decreased microbial carbon use efficiency significantly and had lower gross S flux rates. • Microbes are subject to intensive P limitation under treatment CaN. • Microbial inorganic 35S immobilisation decreased with lime input. • S fertiliser (CaNPK 2 SO 4) potentially constrained S transformation rates. [ABSTRACT FROM AUTHOR]

Background: Even with extensive root growth, plants may fail to access subsoil water and nutrients when root-restricting soil layers are present. Biopores, created from decaying roots or soil fauna, reduce penetration resistance and channel root growth into the deeper soil. Further positive effects on plants result from biopore traits, as the pore walls are enriched in nutrients, microbial abundance, and activity relative to bulk soil. However, negative effects on plant growth have also been observed due to root clumping in biopores, less root-soil contact than in the surrounding bulk soil and leaching of nutrients. Scope: We discuss methods for biopore research, properties of biopores and their impact plant performance based on a literature review and own data. We elucidate potential implications of altered root-soil contact for plant growth and the consequences of root growth in pores for the rhizosphere microbiome. Conclusions: Biopores play an important but ambiguous role in soils. The effects of biopores on plant growth depend on soil properties such as compaction and moisture in an as-yet-unresolved manner. However, pore properties and root-soil contact are key parameters affecting plant yield. Knowledge gaps exist on signaling pathways controlling root growth in pores and on mechanisms modifying rhizosphere properties inside biopores. The degree to which negative effects of biopores on plant growth are compensated in the bulk soil is also unclear. Answering these questions requires interdisciplinary research efforts and novel imaging methods to improve our dynamic understanding of root growth and rhizosphere processes within biopores and at the rhizosphere-biopore interface. [ABSTRACT FROM AUTHOR]

Agricultural production in Central Europe increasingly suffers from extreme drought events. Improving root access to nutrient and water resources in the subsoil below the plow layer is a potential option to maintain productivity during dry summers. Here, we tested a strip-wise subsoil amelioration method that combines subsoil loosening with organic matter incorporation into the subsoil (biowaste or green waste compost) and compared it with a treatment of only subsoil loosening and a non-ameliorated control. A field experiment with randomized block design was conducted on a Luvisol with an argic horizon (Bt), with a rotation of spring barley and winter wheat. In the first two years after amelioration, we monitored soil physico-chemical parameters, microbial biomass, and shoot and root growth at anthesis as well as harvested grain yield and quality. Subsoil loosening with organic matter incorporation significantly decreased soil bulk density at the depth of compost incorporation when biowaste compost was used, but not when green waste compost had been incorporated. Nutrient stocks, nutrient availability and microbial biomass were not consistently affected by the subsoil amelioration. Nevertheless, the incorporation of organic material, especially biowaste compost, significantly increased root growth into the subsoil and subsequently significantly enhanced crop nutrient uptake, biomass and grain yield production. Green waste compost incorporation had less pronounced effects, with an increase in grain yield only in the second year after amelioration. Differences in crop development could not be explained by any single soil parameter, suggesting that it was rather a combined effect of loosened subsoil and better supply of subsoil resources that resulted in an increase in subsoil root length density and subsequently led to better crop performance. • Only loosening of subsoil did not affect soil bulk density and nutrient availability. • Root growth into subsoil was enhanced after loosening with compost addition. • Also yields after subsoil loosening were increased with compost addition. [ABSTRACT FROM AUTHOR]

Bioturbation involves the incorporation of residues from the surface soil into the subsoil; however, common small soil 'bioengineers', such as earthworms or termites, are unlikely to transport human artifacts to deeper soil horizons. However, such artifacts occur in the deeper soil horizons within Amazonian Anthrosols (Terra Preta). Here we test the assumption that such tasks could be carried out by fly larvae, which could thus play a crucial role in waste decomposition and associated soil mixing under tropical conditions. We performed two greenhouse experiments with sandy substrate covered with layers of organic waste, ceramic fragments, and black soldier fly larvae (BSFL) (Hermetia illucens (L.) (Dipt.: Stratiomyidae)). We used in-situ images to assess the rate of bioturbation by BSFL, and then designed our main study to observe waste dissipation (reduction of organic carbon and phosphorus contents from waste model trials with and without charcoal) as related to larval-induced changes in soil properties. We found that the bioturbation of macroinvertebrates like BSFL was able to bury even large (> 5 cm) ceramic fragments within hours, which coincided with high soil growth rates (0.5 cm h-1). The sandy soil was subsequently heavily enriched with organic matter and phosphorus originating from organic waste. We conclude that BSFL, and possibly other fly species, are important, previously overlooked soil 'bioengineers', which may even contribute to the burial of artifacts in Anthrosols and other terrestrial waste dumps. [ABSTRACT FROM AUTHOR]

Summary: Understanding P uptake in soil–plant systems requires suitable P tracers. The stable oxygen isotope ratio in phosphate (expressed as δ18OP) is an alternative to radioactive labelling, but the degree to which plants preserve the δ18OP value of the P source is unclear. We hypothesised that the source signal will be preserved in roots rather than shoots.In soil and hydroponic experiments with spring wheat (Triticum aestivum), we replaced irrigation water by 18O‐labelled water for up to 10 d. We extracted plant inorganic phosphates with trichloroacetic acid (TCA), assessed temporal dynamics of δ18OTCA‐P values after changing to 18O‐labelled water and combined the results with a mathematical model.Within 1 wk, full equilibration of δ18OTCA‐P values with the isotope value of the water in the growth medium occurred in shoots but not in roots. Model results further indicated that root δ18OTCA‐P values were affected by back transport of phosphate from shoots to roots, with a greater contribution of source P at higher temperatures when back transport was reduced.Root δ18OTCA‐P partially preserved the source signal, providing an indicator of P uptake sources. This now needs to be tested extensively for different species, soil and climate conditions to enable application in future ecosystem studies. [ABSTRACT FROM AUTHOR]

Background and aims: Phosphorus (P) is an essential element for crop growth. However, while links of P turnover in soils to carbon (C) and nitrogen (N) availability have been described, it remains to be clarified how combinations of fertilizer C and N additions affect stocks and cycling of distinct P fractions at different soil depths. The objectives of our study were (1) to assess how soil total P stocks are affected by organic amendments and N fertilization, (2) to evaluate how different soil P fractions respond to N fertilization, and (3) to verify whether N fertilization increases soil biological P cycling. Methods: We collected soil samples from a long‐term field experiment established in 1984 in Rauischholzhausen, Germany. The soil is a Haplic Luvisol and received either no organic fertilizer (NOF), farmyard manure (FYM) or a combination of organic and mineral N fertilizer (OMF). Each treatment additionally received three levels of mineral N: 0 kg ha−1 y−1 (N0), 100 kg ha−1 y−1 (N100), and 200 kg ha−1 y−1 (N200). The organic fertilizers were applied by a manure spreader and the N fertilizer (calcium ammonium nitrate) was applied in spring as top dressing by a plot fertilizer machine. We estimated stocks of P in fractions isolated by sequential P fractionation, and assessed the oxygen isotopic composition of 1 M HCl‐extractable phosphate (δ18OP). Results: We found that increased organic matter (OM) addition and mineral N inputs caused significant decreases in the stocks of resin‐ and NaHCO3‐extractable P in the topsoil (0–30 cm). Mineral N fertilization alone resulted in significant increases in stocks of resin‐, NaHCO3‐, and NaOH‐extractable P in the upper subsoil (30–50 cm). These changes occurred for both inorganic and organic P. The subsoil δ18OP values were closer to expected equilibrium values in soil fertilized with mineral N, indicative of more intensive biological P cycling than in the treatments without mineral N inputs. Conclusions: These findings suggest that long‐term OM and mineral N fertilization promotes topsoil P losses from labile fractions by crop uptake with an enrichment of these P forms in the subsoil, and an overall increase in biological P cycling in both top‐ and subsoil horizons upon N fertilization. [ABSTRACT FROM AUTHOR]

Phosphorus (P) tracing in natural environments is challenging, lacking stable P isotopes Oxygen isotope ratios in phosphate (δ18OP) represent a novel tool for tracing the biological cycling of P from the global scale down to hotspots at the micro‐scale and within particular soil compartments such as aggregates or pores. Despite the small number of studies available so far, existing data indicate that δ18OP values point to where, at what extent and how efficiently P is recycled in soils. [ABSTRACT FROM AUTHOR]

Tree roots penetrate the soil to several meters depth, but the role of subsoils for the supply of nutrient elements such as phosphorus (P) to the trees is poorly understood. Here, we tested the hypothesis that increased P deficiency in the topsoil results in an increased microbial recycling of P from the forest subsoil. We sampled soils from four German temperate forest sites representing a gradient in total P stocks. We analyzed the oxygen isotopic composition of HCl-extractable phosphate (δ18OP) and identified differences in P speciation with increasing soil depth using X-ray absorption near-edge structure (XANES) spectroscopy. We further determined microbial oxygen demand with and without nutrient supply at different soil depths to analyse nutrient limitation of microbial growth and used nanoscale secondary ion mass spectrometry (NanoSIMS) to visualize spatial P gradients in the rhizosphere. We found that δ18OP values in the topsoil of all sites were close to the isotopic signal imparted by biological cycling when oxygen isotopes in phosphate are exchanged by enzymatic activity. However, with increasing soil depth and increasing HCl-P concentrations, δ18Ο values continuously decreased towards values expected for primary minerals in parent material at depths below 60 cm at sites with high subsoil P stocks and below more than 2 m at sites with low subsoil P stocks, respectively. For these depths, XANES spectra also indicated the presence of apatite. NanoSIMS images showed an enrichment of P in the rhizosphere in the topsoil of a site with high P stocks, while this P enrichment was absent at a site with low P stocks and in both subsoils. Addition of C, N and P alone or in combination revealed that microbial activity in subsoils of sites with low P stocks was mostly P limited, whereas sites with high P stocks indicated N limitation or N and P co-limitation. We conclude that subsoil P resources are recycled by trees and soil microorganisms. With continued weathering of the bedrock and mobilisation of P from the weathered rocks, P cycling will proceed to greater depths, especially at sites characterised by P limitation. [ABSTRACT FROM AUTHOR]

Deep‐ploughing far beyond the common depth of 30 cm was used more than 50 years ago in Northern Germany with the aim to break root‐restricting layers and thereby improve access to subsoil water and nutrient resources. We hypothesized that effects of this earlier intervention on soil properties and yields prevailed after 50 years. Hence, we sampled two sandy soils and one silty soil (Cambisols and a Luvisol) of which half of the field had been deep‐ploughed 50 years ago (soils then re‐classified as Treposols). The adjacent other half was not deep‐ploughed and thus served as the control. At all the three sites, both deep‐ploughed and control parts were then conventionally managed over the last 50 years. We assessed yields during the dry year 2019 and additionally in 2020, and rooting intensity at the year of sampling (2019), as well as changes in soil structure, carbon and nutrient stocks in that year. We found that deep‐ploughing improved yields in the dry spell of 2019 at the sandy sites, which was supported by a more general pattern of higher NDVI indices in deep‐ploughed parts for the period from 2016 to 2021 across varying weather conditions. Subsoil stocks of soil organic carbon and total plant‐available phosphorus were enhanced by 21%–199% in the different sites. Root biomass in the subsoil was reduced due to deep‐ploughing at the silty site and was increased or unaffected at the sandy sites. Overall, the effects of deep‐ploughing were site‐specific, with reduced bulk density in the buried topsoil stripes in the subsoil of the sandy sites, but with elevated subsoil density in the silty site. Hence, even 50 years after deep‐ploughing, changes in soil properties are still detectable, although effect size differed among sites. [ABSTRACT FROM AUTHOR]

Forest clear-cuts may have severe effects on the soil structure and related nutrient cycling, though with yet unknown consequences for nutrient pools such as phosphorus (P) within microaggregates. We sampled the bulk mineral topsoil prior to clear cut as well as 1 and 2 years thereafter from the experimental forest site Wüstebach, Germany, and we assessed the degree of oxygen isotope exchange in HCl-extractable soil phosphate of two microaggregate size fractions (< 20 μm, 20–250 μm) after incubating soil with 18 O-labeled water. We found that after the clear-cut, microaggregate phosphates exchanged significantly more oxygen with the incubation water than before clear cut. One and two years after clear cut, the respective δ 18 O values of soil phosphates (δ 18 O P,HCl ) were elevated by 16 and 38% (< 20 μm) and by 43 and 53% (20–250 μm) than before the clear-cut, respectively, indicating that additional microaggregate P had been made available to biological P cycling. The degree of oxygen exchange after the clear-cut was significantly greater in larger soil microaggregates than in the smaller sized ones, reflecting that also at microaggregate level size controlled the increase in the bioavailability of P with changes in land management. [ABSTRACT FROM AUTHOR]

Priming effect is the change of soil organic matter (SOM) decomposition due to the addition of labile carbon (C) sources. Earthworms incorporate organic matter into their burrow-linings thereby creating preferred habitats for microorganisms, but the roles of such burrows in priming effect initiation is unknown. Here we study the mechanisms driving SOM decomposition in top- and subsoil biopores and additionally in the rhizosphere. Given the topsoil was newly formed after ploughing 10 months prior to sampling, we hypothesized that (1) SOM accessibility, enzyme activities and efficiency of enzymatic reaction ( K a ) are main drivers of different priming effect in biopores vs. bulk soil and rhizosphere, subsoil vs. topsoil and (2) the production of microbial enzymes in biopores depends on microbial community composition. To test these hypotheses, biopores formed by Lumbricus terrestris L. and bulk soil were sampled from topsoil (0–30 cm) and two subsoil depths (45–75 and 75–105 cm). Additionally, rhizosphere samples were taken from the topsoil. Total organic C (C org ), total N (TN), total P (TP) and enzyme activities involved in C-, N-, and P-cycling (cellobiohydrolase, β-glucosidase, xylanase, chitinase, leucine aminopeptidase and phosphatase) were measured. Priming effects were calculated as the difference in SOM-derived CO 2 from soil with or without 14 C-labeled glucose addition. Enzyme activities ( V max ) and the catalytic efficiency ( K a ) were higher in biopores compared to bulk soil and the rhizosphere, indicating that the most active microbial community occurred at this site. Negative correlations between some enzymes and C:N ratio in bulk soil are explained by higher content of fresh organic C in the topsoil, and the corresponding C and nutrient limitations in the subsoil. The positive correlation between enzyme activities and Corg or TN in biopores, however, was associated with the decrease of C and TN with pore age in the subsoil. In the subsoil, priming effect in biopores was 2.5 times higher than bulk soil, resulting from the favorable conditions for microorganisms in biopores and the stimulation of microbial activities by earthworm mucus. We conclude that earthworm burrows provide not only the linkage between top- and subsoil for C and nutrients, but strongly increase microbial activities and accelerate SOM turnover in subsoil, contributing to nutrient mobilization for roots. [ABSTRACT FROM AUTHOR]

• Arable measures bear high potential to affect topsoil SOC stocks. • Mineral and organic fertilization, straw incorporation caused major SOC gain. • Liming and reduced tillage had little or even negative effects on SOC storage. • Sandy soils exhibited the largest relative response to management options. • Up to 10‰ SOC accrual per year were reached by combination of measures. Crop production often leads to soil organic carbon (SOC) losses. However, under good management practice it is possible to maintain and even re-accumulate SOC. We evaluated how different cropland management techniques affected SOC stocks in the topsoil (0–30 cm depth) of 10 long-term experiments (LTE) in Germany. We found that SOC stocks were particularly enhanced by mineral fertilization and organic amendments like straw incorporation and to a smaller degree by irrigation, but only slightly affected by the choice of preceding crops. In agreement with global meta -analyses, liming and reduced tillage had little or even negative effects on SOC storage, but effects also depended on fertilization. Management effects on SOC stocks were dependent on soil texture: sandy soils showed the lowest SOC stocks of 20.9 ± 2.3 (standard error of the mean) Mg ha−1, but exhibited the largest relative response to different management options. Annual changes in SOC stocks ranged from −3.0 ‰ with no mineral N fertilization, to + 6.1 ‰ with farmyard manure application, using the mineral-fertilized and limed treatment as reference. Even higher rates of up to + 10.6 ‰ yr−1 were reached with the combination of irrigation and straw incorporation. Note that the contribution of organic amendments to SOC accrual and thus to climate change mitigation must be adjusted for reduction in SOC at sites from which straw was removed. Overall, the potential of agricultural management to influence and enhance SOC stocks is significant. This potential is controlled by soil type and land-use duration, is largest for sandy soils with overall lowest SOC stocks, and is characterized by antagonistic and synergistic effects of different management practices. [ABSTRACT FROM AUTHOR]

Sustainable forest management requires understanding of ecosystem phosphorus (P) cycling. Lang et al. (2017) [Biogeochemistry,https://doi.org/10.1007/s10533-017-0375-0] introduced the concept of P-acquiring vs. P-recycling nutrition strategies for European beech (Fagus sylvatica L.) forests on silicate parent material, and demonstrated a change from P-acquiring to P-recycling nutrition from P-rich to P-poor sites. The present study extends this silicate rock-based assessment to forest sites with soils formed from carbonate bedrock. For all sites, it presents a large set of general soil and bedrock chemistry data. It thoroughly describes the soil P status and generates a comprehensive concept on forest ecosystem P nutrition covering the majority of Central European forest soils. For this purpose, an Ecosystem P Nutrition Index (ENIP) was developed, which enabled the comparison of forest P nutrition strategies at the carbonate sites in our study among each other and also with those of the silicate sites investigated by Lang et al. (2017). The P status of forest soils on carbonate substrates was characterized by low soil P stocks and a large fraction of organic Ca-bound P (probably largely Ca phytate) during early stages of pedogenesis. Soil P stocks, particularly those in the mineral soil and of inorganic P forms, including Al- and Fe-bound P, became more abundant with progressing pedogenesis and accumulation of carbonate rock dissolution residue. Phosphorus-rich impure, silicate-enriched carbonate bedrock promoted the accumulation of dissolution residue and supported larger soil P stocks, mainly bound to Fe and Al minerals. In carbonate-derived soils, only low P amounts were bioavailable during early stages of pedogenesis, and, similar to P-poor silicate sites, P nutrition of beech forests depended on tight (re)cycling of P bound in forest floor soil organic matter (SOM). In contrast to P-poor silicate sites, where the ecosystem P nutrition strategy is direct biotic recycling of SOM-bound organic P, recycling during early stages of pedogenesis on carbonate substrates also involves the dissolution of stable Ca-Porg precipitates formed from phosphate released during SOM decomposition. In contrast to silicate sites, progressing pedogenesis and accumulation of P-enriched carbonate bedrock dissolution residue at the carbonate sites promote again P-acquiring mechanisms for ecosystem P nutrition. [ABSTRACT FROM AUTHOR]

Purpose: Precrops exhibit vigorous deep root growth, especially when grown perennially. However, their contribution to accumulate essential nutrients derived from deeper soil layers in the topsoil has not been quantified. We determined the vertical distribution of phosphorous (P) and potassium (K) affected by contrasting root systems of 3 precrops and their effects on subsequently grown spring wheat. Methods: Three precrops (lucerne, chicory and tall fescue) were grown for 1, 2 and 3 years prior to spring wheat cultivation. We measured plant available soil P and K from 0 to 30 cm to 75–105 cm of soil depth after precropping. Root growth and crop performance of spring wheat as affected by precropping were measured in two repeated trials. Results: We observed maximum 22-fold higher root-length density (RLD; cm cm− 3) of taprooted chicory compared with fibrous-rooted tall fescue in the subsoil. There were significant increases in plant available K in the topsoil by 27 mg kg− 1 over the precrop duration between 1 and 3 years. Grain yield of subsequently grown spring wheat was significantly increased by 10 % and 14 % from 1 year to 3 year-treatments of lucerne and chicory, respectively. Similarly, significant increases in P uptake (7 % and 19 %) and K uptake (21 and 14 %) of spring wheat was noted for the same treatments. Conclusions: Our data suggest that there is potential for the yield of short-season cereals to be improved by increased soil nutrient bioavailability in the topsoil derived from deeper soil layers by the deep roots of perennial precrops. [ABSTRACT FROM AUTHOR]

Sustainable arable cropping relies on repeated liming. Yet, the associated increase in soil pH can reduce the availability of iron (Fe) to plants. We hypothesized that repeated liming, but not pedogenic processes such as lessivage (i.e., translocation of clay particles), alters the Fe cycle in Luvisol soil, thereby affecting Fe isotope composition in soils and crops. Hence, we analysed Fe concentrations and isotope compositions in soil profiles and winter rye from the long‐term agricultural experimental site in Berlin‐Dahlem, Germany, where a controlled liming trial with three field replicates per treatment has been conducted on Albic Luvisols since 1923. Heterogeneity in subsoil was observed at this site for Fe concentration but not for Fe isotope composition. Lessivage had not affected Fe isotope composition in the soil profiles. The results also showed that almost 100 years of liming lowered the concentration of the HCl‐extractable Fe that was potentially available for plant uptake in the surface soil (0–15 cm) from 1.03 (standard error (SE) 0.03) to 0.94 (SE 0.01) g kg−1. This HCl‐extractable Fe pool contained isotopically lighter Fe (δ56Fe = −0.05 to −0.29‰) than the bulk soil (δ56Fe = −0.08 to 0.08‰). However, its Fe isotope composition was not altered by the long‐term lime application. Liming resulted in relatively lower Fe concentrations in the roots of winter rye. In addition, liming led to a heavier Fe isotope composition of the whole plants compared with those grown in the non‐limed plots (δ56FeWholePlant_ + Lime = −0.12‰, SE 0.03 vs. δ56FeWholePlant_‐Lime = −0.21‰, SE 0.01). This suggests that the elevated soil pH (increased by one unit due to liming) promoted the Fe uptake strategy through complexation of Fe(III) from the rhizosphere, which favoured heavier Fe isotopes. Overall, the present study showed that liming and a related increase in pH did not affect the Fe isotope compositions of the soil, but may influence the Fe isotope composition of plants grown in the soil if they alter their Fe uptake strategy upon the change of Fe availability. Highlights: Fe concentrations and stocks, but not Fe isotope compositions, were more heterogeneous in subsoil than in topsoil.Translocation of clay minerals did not result in Fe isotope fractionation in the soil profile of a Luvisol.Liming decreased Fe availability in topsoil, but did not affect its δ56Fe values.Uptake of heavier Fe isotopes by graminaceous crops was more pronounced at elevated pH. [ABSTRACT FROM AUTHOR]

Agricultural management can influence soil organic carbon (SOC) stocks and thus may contribute to carbon sequestration and climate change mitigation. The soil depth to which agricultural management practices affect SOC is uncertain. Soil depth may have an important bearing on soil carbon dynamics, so it is important to consider depth effects to capture fully changes in SOC stocks. This applies in particular to the evaluation of carbon farming measures, which are becoming increasingly important due to climate change. We sampled and analysed the upper metre of mineral cropland soils from ten long-term experiments (LTEs) in Germany to quantify depth-specific effects on SOC stocks of common agricultural management practices: mineral nitrogen (N) fertilisation, a combination of N, phosphorus (P) and potassium (K) fertilisation, irrigation, a crop rotation with preceding crops (pre-crops), straw incorporation, application of farmyard manure (FYM), liming, and reduced tillage. In addition, the effects of soil compaction on SOC stocks were examined as a negative side effect of agricultural management. Results showed that 19 ± 3 % of total management effects on SOC stocks were found in the upper subsoil (30–50 cm) and 3 ± 4 % in the lower subsoil (50–100 cm), including all agricultural management practices with significant topsoil SOC effects, while 79 ± 7 % of management effects were in the topsoil (0–30 cm). Nitrogen and NPK fertilisation were the treatments that had the greatest effect on subsoil organic carbon (OC) stocks, followed by irrigation, FYM application and straw incorporation. Sampling down to a depth of 50 cm resulted in significantly higher SOC effects than when considering topsoil only. A crop rotation with pre-crops, liming, reduced tillage and soil compaction did not significantly affect SOC stocks at any depth increment. Since approximately 20 % of the impact of agricultural management on SOC stocks occurs in the subsoil, we recommend soil monitoring programs and carbon farming schemes extend their standard soil sampling down to 50 cm depth to capture fully agricultural management effects on SOC. • Ten 32- to 112-year-old long-term experiments were sampled down to 100 cm depth. • Sampling only topsoil ignores 20 % of agricultural management effects on SOC stocks. • Mineral fertilisation had the greatest effect on subsoil organic carbon stocks. • None of the agricultural measures had significant effects deeper than 50 cm. • Standard soil sampling should therefore be extended to 50 cm depth. [ABSTRACT FROM AUTHOR]

Subsoil organic carbon (OC) is generally lower in content and more heterogeneous than topsoil OC, rendering it difficult to detect significant differences in subsoil OC storage. We tested the application of laboratory hyperspectral imaging with a variety of machine learning approaches to predict OC distribution in undisturbed soil cores. Using a bias-corrected random forest we were able to reproduce the OC distribution in the soil cores with very good to excellent model goodness-of-fit, enabling us to map the spatial distribution of OC in the soil cores at very high resolution (~53 × 53 µm). Despite a large increase in variance and reduction in OC content with increasing depth, the high resolution of the images enabled statistically powerful analysis in spatial distribution of OC in the soil cores. In contrast to the relatively homogeneous distribution of OC in the plough horizon, the subsoil was characterized by distinct regions of OC enrichment and depletion, including biopores which contained ~2-10 times higher SOC contents than the soil matrix in close proximity. Laboratory hyperspectral imaging enables powerful, fine-scale investigations of the vertical distribution of soil OC as well as hotspots of OC storage in undisturbed samples, overcoming limitations of traditional soil sampling campaigns. [ABSTRACT FROM AUTHOR]

Background and aims: The main difficulty in the use of 3D root architecture models is correct parameterization. We evaluated distributions of the root traits inter-branch distance, branching angle and axial root trajectories from contrasting experimental systems to improve model parameterization.Methods: We analyzed 2D root images of different wheat varieties (Triticum aestivum) from three different sources using automatic root tracking. Model input parameters and common parameter patterns were identified from extracted root system coordinates. Simulation studies were used to (1) link observed axial root trajectories with model input parameters (2) evaluate errors due to the 2D (versus 3D) nature of image sources and (3) investigate the effect of model parameter distributions on root foraging performance.Results: Distributions of inter-branch distances were approximated with lognormal functions. Branching angles showed mean values <90°. Gravitropism and tortuosity parameters were quantified in relation to downwards reorientation and segment angles of root axes. Root system projection in 2D increased the variance of branching angles. Root foraging performance was very sensitive to parameter distribution and variance.Conclusions: 2D image analysis can systematically and efficiently analyze root system architectures and parameterize 3D root architecture models. Effects of root system projection (2D from 3D) and deflection (at rhizotron face) on size and distribution of particular parameters are potentially significant. [ABSTRACT FROM AUTHOR]

In arable fields, biopores are primarily formed by taproots, but may also be bored by earthworms. Irrespective of the pore origin, repeated use by anecic earthworms yields a wall coating that is rich in carbon, nutrients and microorganisms. However, this effect is halted by routine tillage, and it remains unclear how quickly earthworms are able to alter biopore properties in subsoil. We conducted an earthworm incubation field experiment in arable soil to test the capacity of Lumbricus terrestri s to i. increase total nutrient contents including plant available P, ii. alter the microbial community and iii. increase enzyme activities in biopore walls over one vegetation period. Firstly, biopores that contained chicory roots were identified on a plot scale (4.2 × 1.5 m). After two years under fallow, roots were decomposed. We then inserted individual earthworms at 45 cm depth into a subset of these pores, afterwards refilling with topsoil. After six months, earthworms were removed and soil was opened at 45–75 cm and 75–105 cm soil depth layers. The inner pore wall (1 mm) of individual root biopores (‘RBP’) or root biopores modified by earthworms (‘EBP’) as well as the bulk soil were sampled in 6 depth intervals of 10 cm each and analyzed for total C, N, S content, plant available P, microbial biomass, phospholipid fatty acids (PLFA) and enzyme activity. Biochemical properties of bulk soil, RBP and EBP clearly differed after one vegetation period as indicated by principal component analysis. PLFA markers of fungi and protozoa were detected only in biopores. Compared with the bulk soil, total C, N, S were enriched in RBP by a factor of 2.0–3.1, plant available P by a factor of 8–10, and microbial biomass by a factor of 12–36. In EBP, all of these parameters were as in RBP or elevated even further (C, N, S: factor 1.0–1.4, plant available P: factor 1.3–1.5, microbial biomass: factor 1.5–2.0, PLFA markers of fungi: factor 2.6–4.4, PLFA markers of protozoa: factor 9.2–14.2). PLFA markers indicative of the ratio of Gram-positive to Gram-negative bacteria (G+: G−) were 5–10 fold lower in RBP than in bulk soil, the microbial metabolic quotient ( q CO 2 ) was 0.4–0.6 times as high. In EBP, these parameters were further reduced (ratio G+: G−: factor 0.7, q CO 2 : factor 0.7–0.8). RBP were particularly characterized by high contents of 10-methyl branched fatty acid indicators of actinobacteria. Activities of enzymes involved in the C-cycle (xylanase, cellobiohydrolase, ß-glucosidase) and N-cycle (chitinase, chitotriosidase, leucine aminopeptidase) were also elevated in RBP as compared to the bulk soil (factor 1.1–3.6) and further increased in EBP (factor 1.2–3.7). All these effects were more pronounced in the 45–75 cm soil layer. We conclude that, in only six months, L. terrestris in arable fields modified ordinarily nutrient-rich biopores into ‘super-hotspots’ of microbial biomass, enzyme activity and nutrient availabilities. Hence, even short-term promotion of earthworm populations by agricultural management practices can increase microbial biomass and enzyme activity in biopores and its coupling to nutrient mobilization in the subsoil. [ABSTRACT FROM AUTHOR]

• Chronological sequence of aggregate formation processes. • Organic gluing agents initiate and accelerate aggregation process. • Minerals stabilize aggregates in the longer term. • Root-mediated processes further stabilize macroaggregates against ultrasonic dispersion. Microaggregates (<250 µm) are key structural subunits of soils. However, their formation processes, rates, and transformation with time are poorly understood. We took advantage of multiple isotope labelling of potential organic gluing agents and inorganic building units to unravel their role in soil aggregation processes being initiated with and without plant growth. We added 13C-labelled extracellular polymeric substances (EPS), 15N-labelled bacteria, 57Fe-labelled goethite, and 29Si-labelled montmorillonite to fine soil <250 µm of an Ap horizon from a Stagnic Luvisol, which was planted with Festuca heteromalla or kept bare in a climate chamber. Samples were taken after 4, 12, and 30 weeks, and separated into free (f) and occluded (o) microaggregates of different sizes (<20 µm, 53–20 µm, 250–53 µm), and in stable macroaggregates (>250 µm) that resisted 60 J mL−1 ultrasonic dispersion. Afterwards, we assessed the C, N, Fe, and Si stable isotope composition in each size fraction. After four weeks we found a rapid build-up of stable macroaggregates comprising almost 50 % of soil mass in the treatment with plants and respective soil rooting, but only 5 % when plants were absent. The formation of these stable macroaggregates proceeded with time. Soil organic carbon (SOC) contents were elevated by 15 % in the large macroaggregates induced by plant growth. However, the recovery of EPS-derived 13C was below 20 % after 4 weeks, indicating rapid turnover in treatments both with and without plants. The remaining EPS-derived C was mainly found in macroaggregates when plants were present and in the occluded small microaggregates (<20 µm) when plants were absent. The excess of bacterial 15N closely followed the pattern of EPS-derived 13C (R2 = 0.72). In contrast to the organic gluing agents, the goethite-57Fe and montmorillonite-29Si were relatively equally distributed across all size fractions. Overall, microaggregates were formed within weeks. Roots enforced this process by stabilizing microaggregates within stable macroaggregates. As time proceeded the labelled organic components decomposed, while the labelled secondary oxides and clay minerals increasingly contributed to aggregate stabilization and turnover at the scale of months and beyond. Consequently, the well-known hierarchical organization of aggregation follows a clear chronological sequence of stabilization and turnover processes. [ABSTRACT FROM AUTHOR]

• Chronological sequence of aggregate formation processes. • Organic gluing agents initiate and accelerate aggregation process. • Minerals stabilize aggregates in the longer term. • Root-mediated processes further stabilize macroaggregates against ultrasonic dispersion. Microaggregates (<250 µm) are key structural subunits of soils. However, their formation processes, rates, and transformation with time are poorly understood. We took advantage of multiple isotope labelling of potential organic gluing agents and inorganic building units to unravel their role in soil aggregation processes being initiated with and without plant growth. We added 13C-labelled extracellular polymeric substances (EPS), 15N-labelled bacteria, 57Fe-labelled goethite, and 29Si-labelled montmorillonite to fine soil <250 µm of an Ap horizon from a Stagnic Luvisol, which was planted with Festuca heteromalla or kept bare in a climate chamber. Samples were taken after 4, 12, and 30 weeks, and separated into free (f) and occluded (o) microaggregates of different sizes (<20 µm, 53–20 µm, 250–53 µm), and in stable macroaggregates (>250 µm) that resisted 60 J mL−1 ultrasonic dispersion. Afterwards, we assessed the C, N, Fe, and Si stable isotope composition in each size fraction. After four weeks we found a rapid build-up of stable macroaggregates comprising almost 50 % of soil mass in the treatment with plants and respective soil rooting, but only 5 % when plants were absent. The formation of these stable macroaggregates proceeded with time. Soil organic carbon (SOC) contents were elevated by 15 % in the large macroaggregates induced by plant growth. However, the recovery of EPS-derived 13C was below 20 % after 4 weeks, indicating rapid turnover in treatments both with and without plants. The remaining EPS-derived C was mainly found in macroaggregates when plants were present and in the occluded small microaggregates (<20 µm) when plants were absent. The excess of bacterial 15N closely followed the pattern of EPS-derived 13C (R2 = 0.72). In contrast to the organic gluing agents, the goethite-57Fe and montmorillonite-29Si were relatively equally distributed across all size fractions. Overall, microaggregates were formed within weeks. Roots enforced this process by stabilizing microaggregates within stable macroaggregates. As time proceeded the labelled organic components decomposed, while the labelled secondary oxides and clay minerals increasingly contributed to aggregate stabilization and turnover at the scale of months and beyond. Consequently, the well-known hierarchical organization of aggregation follows a clear chronological sequence of stabilization and turnover processes. [ABSTRACT FROM AUTHOR]