31 results on '"Batts WN"'
Search Results
2. Universal reverse-transcriptase real-time PCR for infectious hematopoietic necrosis virus (IHNV)
- Author
-
Purcell, MK, primary, Thompson, RL, additional, Garver, KA, additional, Hawley, LM, additional, Batts, WN, additional, Sprague, L, additional, Sampson, C, additional, and Winton, JR, additional
- Published
- 2013
- Full Text
- View/download PDF
3. Emergence of Viral hemorrhagic septicemia virus in the North American Great Lakes region is associated with low viral genetic diversity
- Author
-
Thompson, TM, primary, Batts, WN, additional, Faisal, M, additional, Bowser, P, additional, Casey, JW, additional, Phillips, K, additional, Garver, KA, additional, Winton, J, additional, and Kurath, G, additional
- Published
- 2011
- Full Text
- View/download PDF
4. Establishment and partial characterization of a cell line from burbot Lota lota maculosa: susceptibility to IHNV, IPNV and VHSV
- Author
-
Polinski, MP, primary, Drennan, JD, additional, Batts, WN, additional, Ireland, SC, additional, and Cain, KD, additional
- Published
- 2010
- Full Text
- View/download PDF
5. Detection of viral hemorrhagic septicemia in round gobies in New York State (USA) waters of Lake Ontario and the St. Lawrence River
- Author
-
Groocock, GH, primary, Getchell, RG, additional, Wooster, GA, additional, Britt, KL, additional, Batts, WN, additional, Winton, JR, additional, Casey, RN, additional, Casey, JW, additional, and Bowser, PR, additional
- Published
- 2007
- Full Text
- View/download PDF
6. Molecular characterization of birnaviruses isolated from wild marine fishes at the Flemish Cap (Newfoundland)
- Author
-
Romero-Brey, I, primary, Batts, WN, additional, Bandín, I, additional, Winton, JR, additional, and Dopazo, CP, additional
- Published
- 2004
- Full Text
- View/download PDF
7. Host and geographic range extensions of the North American strain of viral hemorrhagic septicemia virus
- Author
-
Hedrick, RP, primary, Batts, WN, additional, Yun, S, additional, Traxler, GS, additional, Kaufman, J, additional, and Winton, JR, additional
- Published
- 2003
- Full Text
- View/download PDF
8. Association of viral hemorrhagic septicemia virus with epizootic hemorrhages of the skin in Pacific herring Clupea harengus pallasi from Prince William Sound and Kodiak Island, Alaska, USA
- Author
-
Meyers, TR, primary, Short, S, additional, Upson, K, additional, Batts, WN, additional, Winton, JR, additional, Wilcock, J, additional, and Brown, E, additional
- Published
- 1994
- Full Text
- View/download PDF
9. Isolates of viral hemorrhagic septicemia virus from North America and Europe can be detected and distinguished by DNA probes
- Author
-
Batts, WN, primary, Arakawa, CK, additional, Bernard, J, additional, and Winton, JR, additional
- Published
- 1993
- Full Text
- View/download PDF
10. Identification of viral hemorrhagic septicemia virus isolated from Pacific cod Gadus macrocephalus in Prince William Sound, Alaska, USA
- Author
-
Meyers, TR, primary, Sullivan, J, additional, Emmenegger, E, additional, Follett, J, additional, Short, S, additional, Batts, WN, additional, and Winton, JR, additional
- Published
- 1992
- Full Text
- View/download PDF
11. Isolation of infectious hematopoietic necrosis virus from a leech (Piscicola salmositica) and a copepod (Salmincola sp.), ectoparasites of sockeye salmon Oncorhynchus nerka
- Author
-
Mulcahy, D, primary, Klaybor, D, additional, and Batts, WN, additional
- Published
- 1990
- Full Text
- View/download PDF
12. Genetics Reveal Long-Distance Virus Transmission Links in Pacific Salmon.
- Author
-
Breyta RB, Batts WN, and Kurath G
- Abstract
In the coastal region of Washington State, a major pathogen emergence event occurred between 2007 and 2011 in which steelhead trout ( Oncorhynchus mykiss ) experienced a high incidence of infection and disease outbreaks due to the rhabdovirus infectious hematopoietic necrosis virus (IHNV). Genetic typing showed that the introduced viruses were in the steelhead-specific MD subgroup of IHNV and indicated the most likely source was a virus from the nearby Columbia River Basin. In the current study, full-length viral glycoprotein (G) gene sequences were determined for 55 IHNV isolates from both coastal and Columbia fish populations to identify specific source populations and infer mechanisms of transmission to coastal steelhead. We identified three transmission links based on exact fullG genotype matches between Columbia and coastal fish. In all cases, the likely source population was infected juvenile fish, and sink populations were adult fish returning to coastal rivers to spawn. The time intervals between detection in source and sink populations varied from 6 months to nearly 4 years, suggesting different transmission pathways. Surprisingly, distances between source and sink populations varied between 140 and 1000 km. These results confirm repeated introductions of virus from Columbia River Basin fish as the cause of emergence of MD virus on the Washington coast from 2007 to 2011.
- Published
- 2022
- Full Text
- View/download PDF
13. Rapid Diagnostic Test to Detect and Discriminate Infectious Hematopoietic Necrosis Virus (IHNV) Genogroups U and M to Aid Management of Pacific Northwest Salmonid Populations.
- Author
-
Batts WN, Capps TR, Crosson LM, Powers RL, Breyta R, and Purcell MK
- Abstract
Infectious hematopoietic necrosis virus (IHNV) is an acute pathogen of salmonids in North America, Europe, and Asia that is phylogenetically classified into five major virus genogroups (U, M, L, E, and J). The geographic range of the U and M genogroup isolates overlap in the North American Columbia River Basin and Washington Coast region, where these genogroups pose different risks depending on the species of Pacific salmon (Oncorhynchus spp.). For certain management decisions, there is a need to both test for IHNV presence and rapidly determine the genogroup. Herein, we report the development and validation of a U/M multiplex reverse transcription, real-time PCR (RT-rPCR) assay targeting the IHNV nucleocapsid (N) protein gene. The new U/M RT-rPCR is a rapid, sensitive, and repeatable assay capable of specifically discriminating between North American U and M genogroup IHNV isolates. However, one M genogroup isolate obtained from commercially cultured Idaho rainbow trout (O. mykiss) showed reduced sensitivity with the RT-rPCR test, suggesting caution may be warranted before applying RT-rPCR as the sole surveillance test in areas associated with the Idaho trout industry. The new U/M assay had high diagnostic sensitivity (DSe > 94%) and specificity (DSp > 97%) in free-ranging adult Pacific salmon, when assessed relative to cell culture, the widely accepted reference standard, as well as the previously validated universal N RT-rPCR test. The high diagnostic performance of the new U/M assay indicates the test is suitable for surveillance, diagnosis, and confirmation of IHNV in Pacific salmon from the Pacific Northwest regions where the U and M genogroups overlap.
- Published
- 2022
- Full Text
- View/download PDF
14. Novel diagnostic tests for the putative agent of bacterial gill disease in Pacific razor clams (Siliqua patula).
- Author
-
Travis BA, Batts WN, Groner ML, Hershberger PK, Fradkin SC, Conway CM, Park L, and Purcell MK
- Subjects
- Animals, Bacterial Infections epidemiology, Gills, In Situ Hybridization, Intranuclear Inclusion Bodies microbiology, Prevalence, Real-Time Polymerase Chain Reaction, Washington epidemiology, Bivalvia microbiology, Diagnostic Tests, Routine methods, Proteobacteria isolation & purification
- Abstract
Nuclear inclusion X (NIX) is a gamma proteobacteria that infects the nuclei of gill epithelial cells in Pacific razor clams. NIX has been associated with clam die-offs in coastal Washington. A quantitative PCR (qPCR) assay was developed to detect NIX in Pacific razor clams, and assay specificity was confirmed by chromogenic in situ hybridization (CISH). Both tests were applied to evaluate NIX infections in wild Pacific razor clams collected during spring 2019. Consistent with results from earlier histopathological assessments, qPCR and CISH indicated 100% prevalence in razor clams from two Washington beaches and 0% prevalence from two Alaskan beaches., (Published by Elsevier Inc.)
- Published
- 2021
- Full Text
- View/download PDF
15. Roller Massage: Comparing the Immediate Post-Treatment Effects Between an Instructional Video and a Self-Preferred Program Using Two Different Density-Type Roller Balls.
- Author
-
Cheatham SW, Stull KR, Batts WN, and Ambler-Wright T
- Abstract
The aims of this study were to (1) compare the immediate post-treatment effects of an instructional video versus a self-preferred program on the hip range of motion and a pressure pain threshold using two different density roller balls, and (2) compare the effects of the two roller balls on those variables. Forty adults were randomly allocated into four groups: (1) MB1-video, (2) MB1-self-preferred, (3) MBX-video, and (4) MBX-self-preferred. Participants followed a video or a self-preferred program using either a moderate (MB1) or a hard (MBX) density ball. Main outcomes were passive hip internal rotation, external rotation, and a pressure pain threshold. For MB1, the video produced greater outcomes than the self-program for external rotation (10◦ versus 2◦), internal rotation (7◦ versus 2◦), and the pain threshold (210 kPa versus 44 kPa). For MBX, the video produced greater outcomes than the self-program for external rotation (8◦ versus 1◦), internal rotation (5◦ versus 1◦), and the pain threshold (184 kPa versus 30 kPa). When comparing roller balls, the MB1 produced greater outcomes than the MBX for external rotation (10◦ versus 8◦), internal rotation (7◦ versus 5◦), and the pain threshold (210 kPa versus 184 kPa) with the video. For the self-preferred program, the MB1 produced greater outcomes for external rotation (2◦ versus 1◦), internal rotation (2◦ versus 1◦), and the pain threshold (44 kPa versus 30 kPa). The instructional video and a moderate density ball produced greater immediate post-treatment outcomes than the self-program and a hard density ball. Professionals should consider using the video to teach technique and match clients to a specific density-type roller ball., (© 2020 Scott W. Cheatham, Kyle R. Stull, Wendy N. Batts, Tony Ambler-Wright, published by Sciendo.)
- Published
- 2020
- Full Text
- View/download PDF
16. Complete Genome Sequences of the Index Isolates of Two Genotypes of Pacific Salmon Paramyxovirus.
- Author
-
Winton JR, Batts WN, Powers RL, and Purcell MK
- Abstract
We report here the genome sequences of two index strains of Pacific salmon paramyxovirus isolated in 1982 and 1983 from adult salmon in Oregon. The isolates are most closely related to Atlantic salmon paramyxovirus, the type species of the genus Aquaparamyxovirus, but are sufficiently distinct to be considered two genotypes of a novel species.
- Published
- 2019
- Full Text
- View/download PDF
17. Development and characterization of two cell lines from gills of Atlantic salmon.
- Author
-
Gjessing MC, Aamelfot M, Batts WN, Benestad SL, Dale OB, Thoen E, Weli SC, and Winton JR
- Subjects
- Animals, Cell Line, Cell Proliferation, Polymerase Chain Reaction, Gills cytology, Salmo salar
- Abstract
Gill disease in Atlantic salmon, Salmo salar L., causes big losses in the salmon farming industry. Until now, tools to cultivate microorganisms causing gill disease and models to study the gill responses have been lacking. Here we describe the establishment and characterization of two cell lines from the gills of Atlantic salmon. Atlantic salmon gill cell ASG-10 consisted of cells staining for cytokeratin and e-cadherin and with desmosomes as seen by transmission electron microscopy suggesting the cells to be of epithelial origin. These structures were not seen in ASG-13. The cell lines have been maintained for almost 30 passages and both cell lines are fully susceptible to infection by infectious hematopoietic necrosis virus (IHNV), viral hemorrhagic septicemia virus (VHSV), infectious pancreatic necrosis virus (IPNV), Atlantic salmon reovirus TS (TSRV) and Pacific salmon paramyxovirus (PSPV). While infectious salmon anemia virus (ISAV) did not cause visible CPE, immunofluorescent staining revealed a sub-fraction of cells in both the ASG-10 and ASG-13 lines may be permissive to infection. ASG-10 is able to proliferate and migrate to close scratches in the monolayer within seven days in vitro contrary to ASG-13, which does not appear to do have the same proliferative and migratory ability. These cell lines will be useful in studies of gill diseases in Atlantic salmon and may represent an important contribution for alternatives to experimental animals and studies of epithelial-mesenchymal cell biology.
- Published
- 2018
- Full Text
- View/download PDF
18. Isolation and characterization of the fall Chinook aquareovirus.
- Author
-
Makhsous N, Jensen NL, Haman KH, Batts WN, Jerome KR, Winton JR, and Greninger AL
- Subjects
- Animals, Antigens, Viral chemistry, Antigens, Viral genetics, Cell Line, Fish Diseases pathology, Metagenomics, Phylogeny, RNA, Double-Stranded genetics, Real-Time Polymerase Chain Reaction, Reoviridae classification, Reoviridae growth & development, Reverse Transcriptase Polymerase Chain Reaction, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Fish Diseases virology, Genome, Viral, RNA, Viral genetics, Reoviridae genetics, Reoviridae isolation & purification, Salmon virology
- Abstract
Background: Salmon are paramount to the economy, ecology, and history of the Pacific Northwest. Viruses constitute one of the major threats to salmon health and well-being, with more than twenty known virus species that infect salmon. Here, we describe the isolation and characterization of the fall Chinook aquareovirus, a divergent member of the species Aquareovirus B within the family Reoviridae., Methods: The virus was first found in 2014 as part of a routine adult broodstock screening program in which kidney and spleen tissue samples from healthy-appearing, adult fall Chinook salmon (Oncorhynchus tshawytscha) returning to a hatchery in Washington State produced cytopathic effects when inoculated onto a Chinook salmon embryo cell line (CHSE-214). The virus was not able to be confirmed by an RT-PCR assay using existing aquareovirus pan-species primers, and instead was identified by metagenomic next-generation sequencing. Metagenomic next-generation sequencing was used to recover the full genome and completed using 3' RACE., Results: The genome of the fall Chinook aquareovirus contains 11 segments of double-stranded RNA totaling 23.3 kb, with each segment flanked by the canonical sequence termini found in the aquareoviruses. Sequence comparisons and a phylogenetic analysis revealed a nucleotide identity of 63.2% in the VP7 gene with the Green River Chinook virus, placing the new isolate in the species Aquareovirus B. A qRT-PCR assay was developed targeting the VP2, which showed rapid growth of the isolate during the initial 5 days in culture using CHSE-214 cells., Conclusions: This sequence represents the first complete genome of an Aquareovirus B species. Future studies will be required to understand the potential pathogenicity and epidemiology of the fall Chinook aquareovirus.
- Published
- 2017
- Full Text
- View/download PDF
19. Molecular characterization of a novel orthomyxovirus from rainbow and steelhead trout (Oncorhynchus mykiss).
- Author
-
Batts WN, LaPatra SE, Katona R, Leis E, Ng TFF, Brieuc MSO, Breyta RB, Purcell MK, Conway CM, Waltzek TB, Delwart E, and Winton JR
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Genetic Speciation, Isavirus classification, Isavirus genetics, Orthomyxoviridae classification, Orthomyxoviridae Infections virology, Phylogeny, Sequence Alignment, Sequence Homology, Nucleic Acid, Fish Diseases virology, Genome, Viral, Oncorhynchus mykiss virology, Orthomyxoviridae genetics, Orthomyxoviridae Infections veterinary, RNA, Viral genetics
- Abstract
A novel virus, rainbow trout orthomyxovirus (RbtOV), was isolated in 1997 and again in 2000 from commercially-reared rainbow trout (Oncorhynchus mykiss) in Idaho, USA. The virus grew optimally in the CHSE-214 cell line at 15°C producing a diffuse cytopathic effect; however, juvenile rainbow trout exposed to cell culture-grown virus showed no mortality or gross pathology. Electron microscopy of preparations from infected cell cultures revealed the presence of typical orthomyxovirus particles. The complete genome of RbtOV is comprised of eight linear segments of single-stranded, negative-sense RNA having highly conserved 5' and 3'-terminal nucleotide sequences. Another virus isolated in 2014 from steelhead trout (also O. mykiss) in Wisconsin, USA, and designated SttOV was found to have eight genome segments with high amino acid sequence identities (89-99%) to the corresponding genes of RbtOV, suggesting these new viruses are isolates of the same virus species and may be more widespread than currently realized. The new isolates had the same genome segment order and the closest pairwise amino acid sequence identities of 16-42% with Infectious salmon anemia virus (ISAV), the type species and currently only member of the genus Isavirus in the family Orthomyxoviridae. However, pairwise comparisons of the predicted amino acid sequences of the 10 RbtOV and SttOV proteins with orthologs from representatives of the established orthomyxoviral genera and a phylogenetic analysis using the PB1 protein showed that while RbtOV and SttOV clustered most closely with ISAV, they diverged sufficiently to merit consideration as representatives of a novel genus. A set of PCR primers was designed using conserved regions of the PB1 gene to produce amplicons that may be sequenced for identification of similar fish orthomyxoviruses in the future., (Published by Elsevier B.V.)
- Published
- 2017
- Full Text
- View/download PDF
20. Molecular identification of erythrocytic necrosis virus (ENV) from the blood of Pacific herring (Clupea pallasii).
- Author
-
Emmenegger EJ, Glenn JA, Winton JR, Batts WN, Gregg JL, and Hershberger PK
- Subjects
- Animals, Base Sequence, DNA Primers genetics, Fishes, High-Throughput Nucleotide Sequencing veterinary, Iridoviridae genetics, Iridoviridae isolation & purification, Molecular Sequence Data, Polymerase Chain Reaction methods, Polymerase Chain Reaction veterinary, Specific Pathogen-Free Organisms, DNA Virus Infections veterinary, Fish Diseases virology, Iridoviridae classification, Phylogeny
- Abstract
Viral erythrocytic necrosis (VEN) is a condition affecting the red blood cells of more than 20 species of marine and anadromous fishes in the North Atlantic and North Pacific Oceans. Among populations of Pacific herring (Clupea pallasii) on the west coast of North America the disease causes anemia and elevated mortality in periodic epizootics. Presently, VEN is diagnosed by observation of typical cytoplasmic inclusion bodies in stained blood smears from infected fish. The causative agent, erythrocytic necrosis virus (ENV), is unculturable and a presumed iridovirus by electron microscopy. In vivo amplification of the virus in pathogen-free laboratory stocks of Pacific herring with subsequent virus concentration, purification, DNA extraction, and high-throughput sequencing were used to obtain genomic ENV sequences. Fragments with the highest sequence identity to the family Iridoviridae were used to design four sets of ENV-specific polymerase chain reaction (PCR) primers. Testing of blood and tissue samples from experimentally and wild infected Pacific herring as well as DNA extracted from other amphibian and piscine iridoviruses verified the assays were specific to ENV with a limit of detection of 0.0003 ng. Preliminary phylogenetic analyses of a 1448 bp fragment of the putative DNA polymerase gene supported inclusion of ENV in a proposed sixth genus of the family Iridoviridae that contains other erythrocytic viruses from ectothermic hosts. This study provides the first molecular evidence of ENV's inclusion within the Iridoviridae family and offers conventional PCR assays as a means of rapidly surveying the ENV-status of wild and propagated Pacific herring stocks., (Published by Elsevier B.V.)
- Published
- 2014
- Full Text
- View/download PDF
21. Genetic analysis of a novel nidovirus from fathead minnows.
- Author
-
Batts WN, Goodwin AE, and Winton JR
- Subjects
- Amino Acid Sequence, Animals, Genetic Variation, Molecular Sequence Data, Nidovirales chemistry, Nidovirales classification, Nidovirales Infections virology, Phylogeny, Sequence Alignment, Viral Proteins chemistry, Viral Proteins genetics, Cyprinidae virology, Fish Diseases virology, Nidovirales genetics, Nidovirales isolation & purification, Nidovirales Infections veterinary
- Abstract
A bacilliform virus was isolated from diseased fathead minnows (Pimephales promelas). Analysis of the complete genome coding for the polyprotein (pp1ab), spike (S), membrane (M) and nucleocapsid (N) proteins revealed that the virus was most like white bream virus (WBV), another bacilliform virus isolated from white bream (Blicca bjoerkna L.) and the type species of the genus Bafinivirus within the order Nidovirales. In addition to similar gene order and size, alignment of deduced amino acid sequences of the pp1ab, M, N and S proteins of the fathead minnow nidovirus (FHMNV) with those of WBV showed 46, 44, 39 and 15 % identities, respectively. Phylogenetic analysis using the conserved helicase domain of the replicase showed FHMNV was distinct from WBV, yet the closest relative identified to date. Thus, FHMNV appears to represent a second species in the genus Bafinivirus. A PCR assay was developed for the identification of future FHMNV-like isolates.
- Published
- 2012
- Full Text
- View/download PDF
22. Detection of viral hemorrhagic septicemia virus by quantitative reverse transcription polymerase chain reaction from two fish species at two sites in Lake Superior.
- Author
-
Cornwell ER, Eckerlin GE, Getchell RG, Groocock GH, Thompson TM, Batts WN, Casey RN, Kurath G, Winton JR, Bowser PR, Bain MB, and Casey JW
- Subjects
- Animals, Fish Diseases epidemiology, Great Lakes Region, Reverse Transcriptase Polymerase Chain Reaction methods, Rhabdoviridae Infections epidemiology, Rhabdoviridae Infections virology, Fish Diseases virology, Lakes, Novirhabdovirus isolation & purification, Perciformes, Reverse Transcriptase Polymerase Chain Reaction veterinary, Rhabdoviridae Infections veterinary
- Abstract
Viral hemorrhagic septicemia virus (VHSV) was first detected in the Laurentian Great Lakes in 2005 during a mortality event in the Bay of Quinte, Lake Ontario. Subsequent analysis of archived samples determined that the first known isolation of VHSV in the Laurentian Great Lakes was from a muskellunge Esox masquinongy collected in Lake St. Clair in 2003. By the end of 2008, mortality events and viral isolations had occurred in all of the Laurentian Great Lakes except Lake Superior. In 2009, a focused disease surveillance program was designed to determine whether VHSV was also present in Lake Superior. In this survey, 874 fish from 7 sites along the U.S. shoreline of Lake Superior were collected during June 2009. Collections were focused on nearshore species known to be susceptible to VHSV. All fish were dissected individually by using aseptic techniques and were tested for the presence of VHSV genetic material by use of a quantitative reverse transcription (qRT) polymerase chain reaction (PCR) targeting the viral nucleoprotein gene. Seventeen fish from two host species at two different sites tested positive at low levels for VHSV. All attempts to isolate virus in cell culture were unsuccessful. However, the presence of viral RNA was confirmed independently in five fish by using a nested PCR that targeted the glycoprotein (G) gene. Partial G gene sequences obtained from three fish were identical to the corresponding sequence from the original 2003 VHSV isolate (MI03) from muskellunge. These detections represent the earliest evidence for the presence of VHSV in Lake Superior and illustrate the utility of the highly sensitive qRT-PCR assay for disease surveillance in aquatic animals.
- Published
- 2011
- Full Text
- View/download PDF
23. Distribution of an invasive aquatic pathogen (viral hemorrhagic septicemia virus) in the Great Lakes and its relationship to shipping.
- Author
-
Bain MB, Cornwell ER, Hope KM, Eckerlin GE, Casey RN, Groocock GH, Getchell RG, Bowser PR, Winton JR, Batts WN, Cangelosi A, and Casey JW
- Subjects
- Animals, Great Lakes Region, Humans, Prevalence, Reverse Transcriptase Polymerase Chain Reaction, Fishes virology, Hemorrhagic Septicemia, Viral epidemiology, Novirhabdovirus isolation & purification, Ships
- Abstract
Viral hemorrhagic septicemia virus (VHSV) is a rhabdovirus found in fish from oceans of the northern hemisphere and freshwaters of Europe. It has caused extensive losses of cultured and wild fish and has become established in the North American Great Lakes. Large die-offs of wild fish in the Great Lakes due to VHSV have alarmed the public and provoked government attention on the introduction and spread of aquatic animal pathogens in freshwaters. We investigated the relations between VHSV dispersion and shipping and boating activity in the Great Lakes by sampling fish and water at sites that were commercial shipping harbors, recreational boating centers, and open shorelines. Fish and water samples were individually analyzed for VHSV using quantitative reverse transcription-polymerase chain reaction (qRT-PCR) and cell culture assays. Of 1,221 fish of 17 species, 55 were VHSV positive with highly varied qRT-PCR titers (1 to 5,950,000 N gene copies). The detections of VHSV in fish and water samples were closely associated and the virus was detected in 21 of 30 sites sampled. The occurrence of VHSV was not related to type of site or shipping related invasion hotspots. Our results indicate that VHSV is widely dispersed in the Great Lakes and is both an enzootic and epizootic pathogen. We demonstrate that pathogen distribution information could be developed quickly and is clearly needed for aquatic ecosystem conservation, management of affected populations, and informed regulation of the worldwide trade of aquatic organisms.
- Published
- 2010
- Full Text
- View/download PDF
24. Genetic analysis of paramyxovirus isolates from Pacific salmon reveals two independently co-circulating lineages.
- Author
-
Batts WN, Falk K, and Winton JR
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Gene Amplification, Molecular Sequence Data, Paramyxoviridae genetics, Paramyxoviridae Infections virology, Polymerase Chain Reaction methods, Polymerase Chain Reaction veterinary, RNA, Viral chemistry, RNA, Viral genetics, Sequence Alignment, Fish Diseases virology, Paramyxoviridae classification, Paramyxoviridae Infections veterinary, Phylogeny, Salmon virology
- Abstract
Viruses with the morphological and biochemical characteristics of the family Paramyxoviridae (paramyxoviruses) have been isolated from adult salmon returning to rivers along the Pacific coast of North America since 1982. These Pacific salmon paramyxoviruses (PSPV), which have mainly been isolated from Chinook salmon Oncorhynchus tshawytscha, grow slowly in established fish cell lines and have not been associated with disease. Genetic analysis of a 505-base-pair region of the polymerase gene from 47 PSPV isolates produced 17 nucleotide sequence types that could be grouped into two major sublineages, designated A and B. The two independently co-circulating sublineages differed by 12.1-13.9% at the nucleotide level but by only 1.2% at the amino acid level. Isolates of PSPV from adult Pacific salmon returning to rivers from Alaska to California over a 25-year period showed little evidence of geographic or temporal grouping. Phylogenetic analyses revealed that these paramyxoviruses of Pacific salmon were most closely related to the Atlantic salmon paramyxovirus (ASPV) from Norway, having a maximum nucleotide diversity of 26.1% and an amino acid diversity of 19.0%. When compared with homologous sequences of other paramyxoviruses, PSPV and ASPV were sufficiently distinct to suggest that they are not clearly members of any of the established genera in the family Paramyxoviridae. In the course of this study, a polymerase chain reaction assay was developed that can be used for confirmatory identification of PSPV.
- Published
- 2008
- Full Text
- View/download PDF
25. Molecular characterisation of Atlantic salmon paramyxovirus (ASPV): a novel paramyxovirus associated with proliferative gill inflammation.
- Author
-
Falk K, Batts WN, Kvellestad A, Kurath G, Wiik-Nielsen J, and Winton JR
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Genome, Viral, Gills virology, Molecular Sequence Data, Paramyxoviridae Infections pathology, Paramyxoviridae Infections virology, Sequence Analysis, DNA, Viral Proteins chemistry, Viral Proteins genetics, Viral Proteins metabolism, Fish Diseases pathology, Fish Diseases virology, Gills pathology, Paramyxoviridae classification, Paramyxoviridae genetics, Paramyxoviridae Infections veterinary, Salmo salar virology
- Abstract
Atlantic salmon paramyxovirus (ASPV) was isolated in 1995 from gills of farmed Atlantic salmon suffering from proliferative gill inflammation. The complete genome sequence of ASPV was determined, revealing a genome 16,968 nucleotides in length consisting of six non-overlapping genes coding for the nucleo- (N), phospho- (P), matrix- (M), fusion- (F), haemagglutinin-neuraminidase- (HN) and large polymerase (L) proteins in the order 3'-N-P-M-F-HN-L-5'. The various conserved features related to virus replication found in most paramyxoviruses were also found in ASPV. These include: conserved and complementary leader and trailer sequences, tri-nucleotide intergenic regions and highly conserved transcription start and stop signal sequences. The P gene expression strategy of ASPV was like that of the respiro-, morbilli- and henipaviruses, which express the P and C proteins from the primary transcript and edit a portion of the mRNA to encode V and W proteins. Sequence similarities among various features related to virus replication, pairwise comparisons of all deduced ASPV protein sequences with homologous regions from other members of the family Paramyxoviridae, and phylogenetic analyses of these amino acid sequences suggested that ASPV was a novel member of the sub-family Paramyxovirinae, most closely related to the respiroviruses.
- Published
- 2008
- Full Text
- View/download PDF
26. Virulence Comparisons of Infectious Hematopoietic Necrosis Virus U and M Genogroups in Sockeye Salmon and Rainbow Trout.
- Author
-
Garver KA, Batts WN, and Kurath G
- Abstract
Infectious hematopoietic necrosis virus (IHNV) is an aquatic rhabdovirus that infects salmonids in the Pacific Northwest of the United States, Europe, and Asia. Isolates of IHNV have been phylogenetically classified into three major viral genogroups, designated U, M, and L. To characterize virulence of IHNV in the context of these three viral genogroups, seven strains of IHNV (three U genogroup strains, three M strains, and one L strain) were compared for their pathogenicity in juvenile sockeye salmon Oncorhynchus nerka, kokanee (lacustrine sockeye salmon), and rainbow trout O. mykiss. Fish were waterborne-exposed to the different viral strains, and virulence was assessed by comparing mortality curves and final cumulative percent mortality (CPM) in both species of fish at 10°C and 15°C. In sockeye salmon and kokanee, the U genogroup virus types were extremely virulent, causing average CPMs of 69-100%, while the M genogroup virus types caused very little or no mortality (CPM = 0-4%). The endangered Redfish Lake sockeye salmon stock exhibited extreme differences in susceptibility to the U and M genogroups. Conversely, in two stocks of rainbow trout, the M genogroup virus types were more virulent, inducing average CPMs of 25-85%, while the U genogroup viruses caused lower mortality (CPM = 5-41%). In both fish species, the single L genogroup strain caused low to intermediate mortality (CPM = 13-53%). Viral glycoprotein sequence comparisons of the seven challenge strains revealed three amino acid sites (247, 256, and 270) that consistently differed between the U and M genogroups, possibly contributing to pathogenicity differences.
- Published
- 2006
- Full Text
- View/download PDF
27. Sequence motifs and prokaryotic expression of the reptilian paramyxovirus fusion protein.
- Author
-
Franke J, Batts WN, Ahne W, Kurath G, and Winton JR
- Subjects
- Amino Acid Motifs, Amino Acid Sequence, Animals, Base Sequence, DNA, Viral genetics, Escherichia coli genetics, Gene Expression, Genes, Viral, Genetic Variation, Models, Molecular, Molecular Sequence Data, Paramyxoviridae isolation & purification, Protein Structure, Secondary, Recombinant Proteins genetics, Sequence Homology, Amino Acid, Paramyxoviridae genetics, Reptiles virology, Viral Fusion Proteins genetics
- Abstract
Fourteen reptilian paramyxovirus isolates were chosen to represent the known extent of genetic diversity among this novel group of viruses. Selected regions of the fusion (F) gene were sequenced, analyzed and compared. The F gene of all isolates contained conserved motifs homologous to those described for other members of the family Paramyxoviridae including: signal peptide, transmembrane domain, furin cleavage site, fusion peptide, N-linked glycosylation sites, and two heptad repeats, the second of which (HRB-LZ) had the characteristics of a leucine zipper. Selected regions of the fusion gene of isolate Gono-GER85 were inserted into a prokaryotic expression system to generate three recombinant protein fragments of various sizes. The longest recombinant protein was cleaved by furin into two fragments of predicted length. Western blot analysis with virus-neutralizing rabbit-antiserum against this isolate demonstrated that only the longest construct reacted with the antiserum. This construct was unique in containing 30 additional C-terminal amino acids that included most of the HRB-LZ. These results indicate that the F genes of reptilian paramyxoviruses contain highly conserved motifs typical of other members of the family and suggest that the HRB-LZ domain of the reptilian paramyxovirus F protein contains a linear antigenic epitope.
- Published
- 2006
- Full Text
- View/download PDF
28. Complete genome sequence of Fer-de-Lance virus reveals a novel gene in reptilian paramyxoviruses.
- Author
-
Kurath G, Batts WN, Ahne W, and Winton JR
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Molecular Sequence Data, Paramyxoviridae genetics, Paramyxoviridae Infections virology, Phylogeny, RNA Editing, Viral Proteins chemistry, Bothrops virology, Genome, Viral, Paramyxoviridae classification, Paramyxoviridae Infections veterinary, Sequence Analysis, DNA, Viral Proteins genetics
- Abstract
The complete RNA genome sequence of the archetype reptilian paramyxovirus, Fer-de-Lance virus (FDLV), has been determined. The genome is 15,378 nucleotides in length and consists of seven nonoverlapping genes in the order 3' N-U-P-M-F-HN-L 5', coding for the nucleocapsid, unknown, phospho-, matrix, fusion, hemagglutinin-neuraminidase, and large polymerase proteins, respectively. The gene junctions contain highly conserved transcription start and stop signal sequences and tri-nucleotide intergenic regions similar to those of other Paramyxoviridae. The FDLV P gene expression strategy is like that of rubulaviruses, which express the accessory V protein from the primary transcript and edit a portion of the mRNA to encode P and I proteins. There is also an overlapping open reading frame potentially encoding a small basic protein in the P gene. The gene designated U (unknown), encodes a deduced protein of 19.4 kDa that has no counterpart in other paramyxoviruses and has no similarity with sequences in the National Center for Biotechnology Information database. Active transcription of the U gene in infected cells was demonstrated by Northern blot analysis, and bicistronic N-U mRNA was also evident. The genomes of two other snake paramyxovirus genotypes were also found to have U genes, with 11 to 16% nucleotide divergence from the FDLV U gene. Pairwise comparisons of amino acid identities and phylogenetic analyses of all deduced FDLV protein sequences with homologous sequences from other Paramyxoviridae indicate that FDLV represents a new genus within the subfamily Paramyxoviridae. We suggest the name Ferlavirus for the new genus, with FDLV as the type species.
- Published
- 2004
- Full Text
- View/download PDF
29. Susceptibility of zebrafish (Danio rerio) to a model pathogen, spring viremia of carp virus.
- Author
-
Sanders GE, Batts WN, and Winton JR
- Subjects
- Animals, Cell Culture Techniques veterinary, DNA, Viral analysis, Disease Susceptibility immunology, Dose-Response Relationship, Immunologic, Female, Fish Diseases immunology, Fish Diseases pathology, Hemorrhage pathology, Male, Models, Animal, Novirhabdovirus immunology, Novirhabdovirus isolation & purification, Reverse Transcriptase Polymerase Chain Reaction veterinary, Rhabdoviridae Infections immunology, Rhabdoviridae Infections mortality, Rhabdoviridae Infections transmission, Skin pathology, Survival Rate, Viremia immunology, Viremia pathology, Viremia veterinary, Carps, Disease Susceptibility veterinary, Fish Diseases virology, Novirhabdovirus pathogenicity, Rhabdoviridae Infections veterinary, Zebrafish
- Abstract
To improve our understanding of the genetic basis of fish disease, we developed a pathogen model, using zebrafish (Danio rerio) and spring virema of carp virus (SVCV). Replicate groups of 10 fish were acclimated to 20 or 24 degrees C, then were exposed to SVCV concentrations of 10(3) to 10(5) plaque-forming units per milliliter (PFU/ml) of water and observed daily. In a second trial, fish were acclimated to 15 degrees C, and replicate groups of 10 fish were exposed to SVCV at a concentration of 10(5) PFU/ml; however, the temperature was raised 1 degrees C/wk. Moribund fish were collected for histologic examination, and dead fish were assayed for virus by use of cell culture and reverse transcriptase-polymerase chain reaction (RT-PCR) analysis. Mortality exceeded 50% in fish exposed to 10(5) PFU of SVCV/ml at the lower temperatures. Clinical signs of disease became evident seven days after viral exposure and were observed most consistently in fish of the 10(5) PFU/ml groups. Affected zebrafish were anorectic and listless, with epidermal petechial hemorrhages followed by death. Use of plaque assays and RT-PCR analysis confirmed presence of SVCV at titers > or = 10(4) PFU/g of tissue. Histologic lesions included multifocal brachial necrosis and melanomacrophage proliferation in gills, liver, and kidneys. These results indicate that zebrafish are susceptible to infection by SVCV under conditions that mimic a natural route of exposure.
- Published
- 2003
30. Comparative sequence analyses of sixteen reptilian paramyxoviruses.
- Author
-
Ahne W, Batts WN, Kurath G, and Winton JR
- Subjects
- Animals, Bothrops genetics, Cells, Cultured, Cloning, Molecular, HN Protein genetics, Microscopy, Electron, Paramyxoviridae classification, Paramyxoviridae isolation & purification, Paramyxoviridae ultrastructure, Phylogeny, Polymerase Chain Reaction, RNA, Viral genetics, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sequence Analysis, RNA, Paramyxoviridae genetics, Reptiles virology
- Abstract
Viral genomic RNA of Fer-de-Lance virus (FDLV), a paramyxovirus highly pathogenic for reptiles, was reverse transcribed and cloned. Plasmids with significant sequence similarities to the hemagglutinin-neuraminidase (HN) and polymerase (L) genes of mammalian paramyxoviruses were identified by BLAST search. Partial sequences of the FDLV genes were used to design primers for amplification by nested polymerase chain reaction (PCR) and sequencing of 518-bp L gene and 352-bp HN gene fragments from a collection of 15 previously uncharacterized reptilian paramyxoviruses. Phylogenetic analyses of the partial L and HN sequences produced similar trees in which there were two distinct subgroups of isolates that were supported with maximum bootstrap values, and several intermediate isolates. Within each subgroup the nucleotide divergence values were less than 2.5%, while the divergence between the two subgroups was 20-22%. This indicated that the two subgroups represent distinct virus species containing multiple virus strains. The five intermediate isolates had nucleotide divergence values of 11-20% and may represent additional distinct species. In addition to establishing diversity among reptilian paramyxoviruses, the phylogenetic groupings showed some correlation with geographic location, and clearly demonstrated a low level of host species-specificity within these viruses.
- Published
- 1999
- Full Text
- View/download PDF
31. Inactivation of infectious hematopoietic necrosis virus by low levels of iodine.
- Author
-
Batts WN, Landolt ML, and Winton JR
- Abstract
The fish rhabdovirus infectious hematopoietic necrosis virus (IHNV) was rapidly inactivated by extremely low concentrations of iodine in water. A 99.9% virus reduction was obtained in 7.5 s when virus (10 PFU/ml) and iodine (0.1 mg/liter, final concentration) were combined in distilled-deionized or hatchery water. Iodine efficacy decreased at pHs greater than 7.5 or when proteinaceous material was added to the water. Bovine serum albumin blocked iodine inactivation of the virus more effectively than did equal concentrations of fetal bovine serum or river sediment. Sodium thiosulfate effectively neutralized free iodine. Powder, iodophor, and crystalline iodine solutions inactivated IHNV equally. Iodine rapidly inactivated IHNV isolates representing each of the five electropherotypes. Under the conditions used in this study, inactivation was not affected by temperature, salinity, or water hardness. When Dworshak National Fish Hatchery water was continuously treated to provide a free iodine concentration of 0.14 mg/liter, a 7.5-s exposure to iodine was sufficient to inactivate 99.9% of the IHNV. Iodine added to water that contained IHNV prevented infection of rainbow trout (Oncorhynchus mykiss) fry. These results suggest that the waterborne route of IHNV transmission can be blocked by adding low iodine concentrations to the water supplies of hatcheries.
- Published
- 1991
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.