45 results on '"Basit Zeshan"'
Search Results
2. Comparing the molecular evolution and recombination patterns of predominant PRRSV-2 lineages co-circulating in China
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Riteng Zhang, Hui Li, Honglin Xie, Xiaolan Hou, Lixuan Zhou, Aiqiao Cao, Basit Zeshan, Yefei Zhou, and Xinglong Wang
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PRRSV ,Bayesian ,recombination hotspots ,evolution dynamics ,glycosylation ,Microbiology ,QR1-502 - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) poses widespread epidemics in swine herds, yet the drivers underlying lineage replacements/fitness dynamics remain unclear. To delineate the evolutionary trajectories of PRRSV-2 lineages prevalent in China, we performed a comprehensive longitudinal phylodynamic analysis of 822 viral sequences spanning 1991–2022. The objectives encompassed evaluating lineage dynamics, genetic diversity, recombination patterns and glycosylation profiles. A significant shift in the dominance of PRRSV-2 sub-lineages has been observed over the past 3 decades, transitioning from sub-lineage 8.7 to sub-lineage 1.8, followed by extensive diversification. The analysis revealed discordant recombination patterns between the two dominant viral sub-lineages 1.8 and 8.7, underscoring that modular genetic exchanges contribute significantly to their evolutionary shaping. Additionally, a strong association was found between recombination breakpoint locations and transcriptional regulatory sequences (TRSs). Glycosylation patterns also demonstrated considerable variability across sub-lineages and temporally, providing evidence for immune-driven viral evolution. Furthermore, we quantified different evolutionary rates across sub-lineages, with sub-lineage 1.8 uniquely displaying the highest nucleotide substitution rates. Taken together, these findings provide refined insight into the evolutionary mechanisms underpinning cyclic shifts in dominance among regionally circulating PRRSV sub-lineages.
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- 2024
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3. Carbapenem resistance gene crisis in A. baumannii: a computational analysis
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Nureen Zahra, Basit Zeshan, and Musarat Ishaq
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Antimicrobial resistance (AMR) ,Computational analysis (CA) ,Drug design (DD) ,Kilocalories per mole(Kcal/mol) ,Microbiology ,QR1-502 - Abstract
Abstract Acinetobacter baumannii (A. baumannii) is one of the members of ESKAPE bacteria which is considered multidrug resistant globally. The objective of this study is to determine the protein docking of different antibiotic resistance gene (ARGs) in A. baumannii. In silico analysis of antibiotic resistance genes against carbapenem are the blaOXA-51, blaOXA-23, blaOXA-58, blaOXA-24, blaOXA-143, NMD-1 and IMP-1 in A. baumannii. The doripenem, imipenem and meropenem were docked to blaOXA-51 and blaOXA-23 using PyRx. The top docking energy was -5.5 kcal/mol by imipenem and doripenem and meropenem showed a binding score of -5. 2 kcal/mol each and blaOXA-23 energy was -4.3 kcal/mol by imipenem and meropenem showed a binding score of -2.3 kcal/mol, while doripenem showed the binding score of -3.4 kcal/mol. Similarly, doripenem imipenem and meropenem were docked to blaOXA-58, IMP-1, Rec A and blaOXA-143, with docking energy was -8.8 kcal/mol by doripenem and meropenem each while imipenem showed a binding score of -4.2 kcal/mol and with IMP-1 demonstrated their binding energies. was -5.7 kcal/mol by meropenem and doripenem showed a binding score of -5.3 kcal/mol, while imipenem showed a binding score of -4.5 kcal/mol. And docking energy was -4.9 kcal/mol by imipenem and meropenem showed binding energy of -3.6 kcal/mol each while doripenem showed a binding score of -3.9 kcal/mol in RecA and with blaOXA-143 docking energy was -3.0 kcal/mol by imipenem and meropenem showed a binding score of -1.9 kcal/mol, while doripenem showed the binding score of -2.5 kcal/mol respectively. Doripenem, imipenem, and meropenem docking findings with blaOXA-24 confirmed their binding energies. Doripenem had the highest docking energy of -5.5 kcal/mol, meropenem had a binding score of -4.0 kcal/mol, and imipenem had a binding score of -3.9 kcal/mol. PyRx was used to dock the doripenem, imipenem, and meropenem to NMD-1. Docking energies for doripenem were all – 4.0 kcal/mol, whereas meropenem had docking energy of -3.3 kcal/mol and imipenem was -1.50 kcal/mol. To the best of our knowledge the underlying mechanism of phenotypic with genotypic resistance molecular docking regarding carbapenem resistance A. baumannii is unclear. Our molecular docking finds the possible protein targeting mechanism for carbapenem-resistant A.baumannii.
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- 2022
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4. The transcriptional characteristics of NADC34-like PRRSV in porcine alveolar macrophages
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Peixin Wang, Xin Ma, Riteng Zhang, Yongxin Zhao, Ruochen Hu, Chen Luo, Basit Zeshan, Zengqi Yang, Li Qiu, Juan Wang, Haijin Liu, Yefei Zhou, and Xinglong Wang
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PRRSV ,NADC34-like ,comparative transcriptome ,time-course transcriptome ,WGCNA ,Microbiology ,QR1-502 - Abstract
The widespread and endemic circulation of porcine reproductive and respiratory syndrome virus (PRRSV) cause persistent financial losses to the swine industry worldwide. In 2017, NADC34-like PRRSV-2 emerged in northeastern China and spread rapidly. The dynamics analysis of immune perturbations associated with novel PRRSV lineage is still incomplete. This study performed a time-course transcriptome sequencing of NADC34-like PRRSV strain YC-2020-infected porcine alveolar macrophages (PAMs) and compared them with JXA1-infected PAMs. The results illustrated dramatic changes in the host’s differentially expressed genes (DEGs) presented at different timepoints after PRRSV infection, and the expression profile of YC-2020 group is distinct from that of JXA1 group. Functional enrichment analysis showed that the expression of many inflammatory cytokines was up-regulated following YC-2020 infection but at a significantly lower magnitude than JXA1 group, in line with the trends for most interferon-stimulated genes (ISGs) and their regulators. Meanwhile, numerous components of histocompatibility complex (MHC) class II and phagosome presented a stronger transcription suppression after the YC-2020 infection. All results imply that YC-2020 may induce milder inflammatory responses, weaker antiviral processes, and more severe disturbance of antigen processing and presentation compared with HP-PRRSV. Additionally, LAPTM4A, GLMP, and LITAF, which were selected from weighted gene co-expression network analysis (WGCNA), could significantly inhibit PRRSV proliferation. This study provides fundamental data for understanding the biological characteristics of NADC34-like PRRSV and new insights into PRRSV evolution and prevention.
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- 2022
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5. Characterization of bacteriocin and chitinase producing bacterial isolates with broad-spectrum antimicrobial activities
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Muhammad Yasir, Basit Zeshan, Nur Hardy A. Daud, Izzah Shahid, and Hafza Khalid
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Bacteriocins ,Chitinase ,Bacillus ,Antibacterial ,Aspergillus ,Antifungal ,Science ,Technology - Abstract
Abstract There is a need for more efficient and eco-friendly approaches to overcome increasing microbial infections. Bacteriocins and chitinases from Bacillus spp. can be powerful alternatives to conventional antibiotics and antifungal drugs, respectively. The purpose of this study was to assess the inhibitory potential of bacteriocins and chitinase enzymes against multiple resistant bacterial and fungal pathogens. Bacterial isolates were selected by growth on minimal salts medium and after that were morphologically and biochemically characterized. The physiochemical characterization of bacteriocins was carried out. The inhibitory potential of bacteriocins towards six pathogenic bacteria was determined by the well diffusion assay while chitinase activity towards three fungal strains was determined by the dual plate culture assay. Two bacterial strains (WW2P1 and WRE4P2), out of nine showed inhibition of K. pneumonia, P. aeruginosa, E. coli and MRSA while WW4P2 was positive against S. typhimurium and E. coli and WRE10P2 against P. aeruginosa, S. pneumoniae. Two bacterial isolates (WW3P1 and WRE10P2) were chosen for further study on the basis of their antifungal activities. Of these, WW3P1 isolate was more effective against A. fumigatus as well as A. niger. The proteinaceous nature of the bacteriocins was confirmed by treatment of the crude extract with proteinase K. It was found that the inhibitory activity of strain WW3P1 against E. coli was highest at 20 °C, and against S. pneumoniae it was at 20 °C and pH 10 after treatment with EDTA. Inhibition by strain the WRE10P2 against P. aeruginosa was highest at 20 °C and pH 14. It was found that EDTA increased the inhibitory activity of strain WW2P1 against P. aeruginosa, K. pneumoniae and E. coli by 2 ± 0.235, 3.5 ± 0.288, 2.5 ± 1.040 times, respectively, of strain WRE4P2 against P. aeruginosa and E. coli by 2.5 ± 0.763, 2.7 ± 0.5 times, respectively, and of strain WRE10P2 against S. pneumoniae by 3 ± 0.6236 times. The isolates have promising inhibitory activity, which should be further analyzed for the commercial production of antimicrobials. Article highlights 1. The current study aimed to isolate the microbiome from wheat plant (Triticum aestivum L.), to screen for bacteriocin production and to assess its antimicrobial activity against human pathogens. 2. Forty-one phenotypically different bacterial colonies were subjected to bacteriocin purification from which 25 colonies showed positive reactions. 3. These 25 bacterial isolates were screened against six different human bacterial pathogens using the well diffusion method to check the antimicrobial activity. Out of nine bacterial isolates, WW3P1 and WRE10P2 were able to degrade the chitin and utilize it as their sole energy source. Strain WRE4P2 exhibited partial inactivation in its activity against MRSA after treatment with proteinase K.
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- 2021
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6. Synthesis, Characterization and Biological Activities of Zinc Oxide Nanoparticles Derived from Secondary Metabolites of Lentinula edodes
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Zeemal Seemab Amin, Muhammad Afzal, Jamshaid Ahmad, Naveed Ahmed, Basit Zeshan, Nik Haszroel Hysham Nik Hashim, and Chan Yean Yean
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mycosynthesis ,nanomaterial ,bioactive compounds ,in vitro activities ,in vivo activities ,Organic chemistry ,QD241-441 - Abstract
Zinc oxide nanoparticles (ZnO NPs) are the second most prevalent metal oxide, owing to their characteristics of low cost, safe, and easily prepared. ZnO NPs have been found to exhibit unique properties which show their potential to be used in various therapies. Numerous techniques have been devised for the manufacture of zinc oxide because it is one of the nanomaterials that has received major research interest. Mushroom sources are proven to be efficient, ecologically friendly, inexpensive, and safe for humankind. In the current study, an aqueous fraction of methanolic extract of Lentinula edodes (L. edoes) was used to synthesize ZnO NPs. The biosynthesis of ZnO NPs was achieved by using the reducing and capping capability of an L. edodes aqueous fraction. Bioactive compounds from mushroom, such as flavonoids and polyphenolic compounds, are used in the green synthesis process to biologically reduce metal ions or metal oxides to metal NPs. Biogenically synthesized ZnO NPs were further characterized by using UV–Vis, FTIR, HPLC, XRD, SEM, EDX, zeta sizer and zeta potential analyses. The FTIR showed the functional group at the spectra in the range 3550–3200 cm−1 indicated the presence of the hydroxyl (OH) group, while bands in the range 1720–1706 cm−1 indicated C=O carboxylic stretches bonds. Furthermore, the XRD pattern of ZnO NPs created in the current study was found to be nanocrystals which are hexagonal. The SEM analysis of ZnO NPs showed spherical shapes and size distributions in the range 90–148 nm. Biologically synthesized ZnO NPs have substantial biological activities including antioxidant, antimicrobial, antipyretic, antidiabetic and anti-inflammatory potential. Biological activities showed significant antioxidant (65.7 ± 1.09), antidiabetic (85.18 ± 0.48), and anti-inflammatory potential (86.45 ± 0.60) at 300 µg inhibition in paw inflammation of (1.1 ± 0.06) and yeast-induced pyrexia (97.4 ± 0.51) at 10 mg in a dose-dependent manner. The outcomes of this research indicated that ZnO NPs significantly reduced inflammation and have the ability to scavenge free radicals and prevent protein denaturation, while also indicating their possible use in food and nutraceutical applications to treat various ailments.
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- 2023
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7. Application of Bacillus subtilis for the Alleviation of Salinity Stress in Different Cultivars of Wheat (Tritium aestivum L.)
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Saboor Gul, Sadia Javed, Muhammad Azeem, Amreen Aftab, Nazima Anwaar, Tahir Mehmood, and Basit Zeshan
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wheat ,salinity ,Bacillus subtilis ,reactive oxygen species (ROS) ,plant growth promoting rhizobacteria (PGPB) ,minimum inhibitory concentration (MIC) ,Agriculture - Abstract
Salinity has a negative impact on the agricultural production of crops. It adversely affects the physiochemical properties of the soil and ecological balance of the area. Plant growth-promoting bacteria play a key role in the biological control of phyto-pathogens and abiotic stress including salinity. Four varieties of wheat crop (V1: Akbar 2019, V2: Dilkash 2021, V3: Faisalabad 2008, and V4: Subhani 2020) were compared for their salinity stress tolerance and response towards Bacillus subtilis NA2. A completely randomized design (4 wheat varieties × 3 salt stress levels × 3 replicate × 2 control and bacterial treatments = 72 pots) was adopted using distilled water as a control. Stress negatively affected the plant growth. However, plants primed with Bacillus subtilis NA2 showed improved growth (plant lengths 29.45% and increased biomass 33.23%). Overall, bacterial strain enhanced the levels of carotenoids (45.53%), anthocyanin (32.51%), ascorbic acid (41.53%), total soluble proteins (59.21%), chlorophyll contents (49.65%), and peroxidase activity (31.76%). Levels of malondialdehyde (27.42%) and hydrogen peroxide (20.37%), catalase (16.48%), and ascorbate peroxidase (19.24%) decreased. With commensurable benefits, it can be inferred from the above study that the Bacillus subtilis NA2 strain is beneficial for the better yield of wheat under salinity stress by improving the plant defense mechanism and may be adopted in future by farmers.
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- 2023
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8. Characterization of Bioactive Compounds and Novel Proteins Derived from Promising Source Citrullus colocynthis along with In-Vitro and In-Vivo Activities
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Muhammad Afzal, Anis Shahzad Khan, Basit Zeshan, Muhammad Riaz, Umer Ejaz, Ayesha Saleem, Rida Zaineb, Haseeb Akram Sindhu, Chan Yean Yean, and Naveed Ahmed
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Citrullus colocynthis ,histopathology ,secondary metabolites ,antioxidant ,antidiabetic ,in silico analysis ,Organic chemistry ,QD241-441 - Abstract
Herbal products are preferable to synthetic medicines, and the use of traditional medicines is increasing day-by-day. The current study was designed to evaluate the potentials of bioactive compounds from Citrullus colocynthis by performing FTIR, HPLC, and GC-MS analyses, which explore the good concentration of the secondary metabolites, such as gallic acid (74.854 ppm), vanillic acid (122.616 ppm), and ferulic acid (101.045 ppm) with considerable bioactivities. Antimicrobial protein was estimated by performing SDS-PAGE, ranging from 15 to 70 kDa in all protein fractions. The current study also checked the cytotoxicity of the bioactive compounds in the active fraction of C. colocynthis, and to perform this activity, the groups of rats were arranged with 16 rats randomly divided into four groups (three experimental and one control) by administering various dosage of methanolic fractions in dose-dependent manner. Histopathology was conducted on the livers of the rats after 15 days of sacrifice under deep anesthesia. In liver cell slides examined at the maximum dose of 600 mg/kg, minimal morphological changes, such as slight ballooning, nuclear variation, vacuolar degeneration, and hydropic degeneration, were observed. Furthermore, the in silico analysis identified bioactive compounds as potential drug candidates.
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- 2023
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9. Assessment of the Phytochemical Analysis and Antimicrobial Potentials of Zingiber zerumbet
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Muhammad Ramzan and Basit Zeshan
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Z. zerumbet ,medicinal plants ,plant extracts ,antimicrobial resistance ,chemical composition ,HPLC ,Organic chemistry ,QD241-441 - Abstract
Antimicrobial resistance (AMR) has arisen as a global concern in recent decades. Plant extracts used in combination with antibiotics are promising against AMR, synergistically. The purpose of this study was to evaluate the component of the bitter ginger (Zingiber zerumbet) extract in different solvents using high-performance liquid chromatography (HPLC), in addition to evaluate the antibacterial activity of these extracts, in combination with their antibiotic potential against four multi-drug resistant (MDR) bacterial strains (Lactobacillus acidophilus, Streptococcus mutans, Enterococcus faecalis and Staphylococcus aureus). Ethanol and the aqueous extracts of bitter ginger were prepared using a conventional solvent extraction method and were evaluated for their phytochemistry using HPLC, qualitatively and quantitatively. Moreover, the antibiotic susceptibility of the pathogenic isolates was determined. A disc diffusion assay was used to obtain the antimicrobial potential of the extracts alone and with antibiotics. Eight components were identified from the separation of the bitter ginger extract by HPLC. For AMR bacteria, the combination of the antibiotic solution with the bitter ginger crude extracts could improve its susceptibility of these antibiotics. This study indicates that the combination of an antibiotic solution with the bitter ginger crude extract exhibits potent antibacterial activities against MDR bacterial strains. Therefore, they can be used for the treatment of various diseases against the microbial pathogen and can be incorporated into medication for antibacterial therapy.
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- 2023
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10. Evaluation of Hematological, Biochemical Profiles and Molecular Detection of Envelope Gene (gp-41) in Human Immunodeficiency Virus (HIV) among Newly Diagnosed Patients
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Asfa Anjum, Abaid ur Rehman, Hina Siddique, Ali A. Rabaan, Saad Alhumaid, Mohammed Garout, Souad A. Almuthree, Muhammad A. Halwani, Safaa A. Turkistani, Haitham Qutob, Hawra Albayat, Mohammed Aljeldah, Basim R. Al Shammari, Fatimah S. Alshahrani, Ali S. Alghamdi, Sami M. Alduwaihi, Adil A. Alibraheem, Shah Zeb, and Basit Zeshan
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AIDS ,Pakistan ,retrovirus ,communicable diseases ,blood-borne diseases ,risk-factors ,Medicine (General) ,R5-920 - Abstract
The Human Immunodeficiency Virus (HIV) is a highly morphic, retrovirus that rapidly evolves through mutation as well as recombination. Because of the immunocompromised status in HIV patients, there is often a higher chance of acquiring different secondary infections followed by liver cirrhosis, hepatitis B & C, and HIV-associated nephropathy. The current study was conducted to see the prevalence of secondary infections, hematological and biochemical markers for liver and renal associated diseases, and to detect the envelope gene (GP41) in newly diagnosed HIV patients. A total of 37 samples were collected from HIV-positive patients registered in different hospital settings under the National AIDS control program. The collected samples were processed for hepatitis B, hepatitis C, hematological analysis, and biochemical analysis. To identify the envelope gene in newly diagnosed HIV patients, polymerase chain reaction (PCR) was performed using four gene-specific primers. The HIV infections were seen more in male as compared to females. A significant decrease in complete blood count was observed in HIV patients when compared to healthy individuals. There was a significant increase in aspartate aminotransferase (AST), alanine aminotransferase (ALT), urea, and creatinine observed in HIV patients. No significant difference was observed in alkaline phosphatase (ALP), total bilirubin, and albumin levels when compared to healthy control. Anemia was observed in 59.4% of HIV patients. A total of three (8.1%) patients were found to be co-infected with hepatitis B and one (2.7 %) was co-infected with hepatitis C. Out of these 37 tested samples, a total of four showed the successful amplification of the envelope gene. This study provides platform for the health care facilitators to regularly monitor the signs, symptoms and clinical biomarkers of HIV-associated infections to prevent toxicity at an early stage to improve the quality of life (QoL) and minimize the mortality rate in HIV patients. Envelope gene mutating frequently results in drug resistance, and thus future research on polymorphism analysis will reveal points of substitutions to improve drug designing.
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- 2022
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11. Synthesis of Silver Nanoparticles from Extracts of Wild Ginger (Zingiber zerumbet) with Antibacterial Activity against Selective Multidrug Resistant Oral Bacteria
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Muhammad Ramzan, Mohmed Isaqali Karobari, Artak Heboyan, Roshan Noor Mohamed, Mohammed Mustafa, Syed Nahid Basheer, Vijay Desai, Salma Batool, Naveed Ahmed, and Basit Zeshan
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biosynthesized silver nanoparticles ,AgNPs ,MDR pathogens ,wild ginger extract ,antibacterial activity ,Organic chemistry ,QD241-441 - Abstract
Antibiotic resistance rate is rising worldwide. Silver nanoparticles (AgNPs) are potent for fighting antimicrobial resistance (AMR), independently or synergistically. The purpose of this study was to prepare AgNPs using wild ginger extracts and to evaluate the antibacterial efficacy of these AgNPs against multidrug-resistant (MDR) Staphylococcus aureus, Streptococcus mutans, and Enterococcus faecalis. AgNPs were synthesized using wild ginger extracts at room temperature through different parameters for optimization, i.e., pH and variable molar concentration. Synthesis of AgNPs was confirmed by UV/visible spectroscopy and further characterized by scanning electron microscopy (SEM), X-ray diffraction (XRD), energy-dispersive X-ray spectroscopy analysis (EDXA), and Fourier-transform infrared spectroscopy (FTIR). Disc and agar well diffusion techniques were utilized to determine the in vitro antibacterial activity of plant extracts and AgNPs. The surface plasmon resonance peaks in absorption spectra for silver suspension showed the absorption maxima in the range of 400–420 nm. Functional biomolecules such as N–H, C–H, O–H, C–O, and C–O–C were present in Zingiber zerumbet (Z. zerumbet) (aqueous and organic extracts) responsible for the AgNP formation characterized by FTIR. The crystalline structure of ZZAE-AgCl-NPs and ZZEE-AgCl-NPs was displayed in the XRD analysis. SEM analysis revealed the surface morphology. The EDXA analysis also confirmed the element of silver. It was revealed that AgNPs were seemingly spherical in morphology. The biosynthesized AgNPs exhibited complete antibacterial activity against the tested MDR bacterial strains. This study indicates that AgNPs of wild ginger extracts exhibit potent antibacterial activity against MDR bacterial strains.
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- 2022
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12. Nanopore-Based Direct RNA-Sequencing Reveals a High-Resolution Transcriptional Landscape of Porcine Reproductive and Respiratory Syndrome Virus
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Riteng Zhang, Peixin Wang, Xin Ma, Yifan Wu, Chen Luo, Li Qiu, Basit Zeshan, Zengqi Yang, Yefei Zhou, and Xinglong Wang
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PRRSV ,transcriptional regulatory sequences ,transcriptomics ,nanopore ,epitranscriptome ,Microbiology ,QR1-502 - Abstract
The TRS-mediated discontinuous transcription process is a hallmark of Arteriviruses. Precise assessment of the intricate subgenomic RNA (sg mRNA) populations is required to understand the kinetics of viral transcription. It is difficult to reconstruct and comprehensively quantify splicing events using short-read sequencing, making the identification of transcription-regulatory sequences (TRS) particularly problematic. Here, we applied long-read direct RNA sequencing to characterize the recombined RNA molecules produced in porcine alveolar macrophages during early passage infection of porcine reproductive and respiratory syndrome virus (PRRSV). Based on sequencing two PRRSV isolates, namely XM-2020 and GD, we revealed a high-resolution and diverse transcriptional landscape in PRRSV. The data revealed intriguing differences in subgenomic recombination types between the two PRRSVs while also demonstrating TRS-independent heterogeneous subpopulation not previously observed in Arteriviruses. We find that TRS usage is a regulated process and share the common preferred TRS in both strains. This study also identified a substantial number of TRS-mediated transcript variants, including alternative-sg mRNAs encoding the same annotated ORF, as well as putative sg mRNAs encoded nested internal ORFs, implying that the genetic information encoded in PRRSV may be more intensively expressed. Epigenetic modifications have emerged as an essential regulatory layer in gene expression. Here, we gained a deeper understanding of m5C modification in poly(A) RNA, elucidating a potential link between methylation and transcriptional regulation. Collectively, our findings provided meaningful insights for redefining the transcriptome complexity of PRRSV. This will assist in filling the research gaps and developing strategies for better control of the PRRS.
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- 2021
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13. The Usage of Antibiotics by COVID-19 Patients with Comorbidities: The Risk of Increased Antimicrobial Resistance
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Basit Zeshan, Mohmed Isaqali Karobari, Nadia Afzal, Amer Siddiq, Sakeenabi Basha, Syed Nahid Basheer, Syed Wali Peeran, Mohammed Mustafa, Nur Hardy A. Daud, Naveed Ahmed, Chan Yean Yean, and Tahir Yusuf Noorani
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antibiotic susceptibility ,antimicrobial resistance pattern ,antimicrobial stewardship ,comorbidity ,COVID-19 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Antimicrobial resistance (AMR) is a global health issue that plays a significant role in morbidity and mortality, especially in immunocompromised patients. It also becomes a serious threat to the successful treatment of many bacterial infections. The widespread and irrelevant use of antibiotics in hospitals and local clinics is the leading cause of AMR. Under this scenario, the study was conducted in a tertiary care hospital in Lahore, Pakistan, from 2 August 2021 to 31 October 2021 to discover the prevalence of bacterial infections and AMR rates in COVID-19 patients admitted in surgical intensive care units (SICUs). Clinical samples were collected from the patients and we proceeded to identify bacterial isolates, followed by antibiotic susceptibility testing (AST) using the Kirby Bauer disk diffusion method and minimum inhibitory concentration (MIC). The data of other comorbidities were also collected from the patient’s medical record. The current study showed that the most common pathogens were E. coli (32%) and Klebsiella pneumoniae (17%). Most E. coli were resistant to ciprofloxacin (16.8%) and ampicillin (19.8%). Klebsiella pneumoniae were more resistant to ampicillin (13.3%) and amoxycillin (12.0%). The most common comorbidity was chronic kidney disease (CKD) and urinary tract infections (UTIs). Around 17 different types of antibiotic, the carbapenem, fluoroquinolones, aminoglycoside, and quinolones, were highly prevalent in ICU patients. The current study provides valuable data on the clinical implication of antibiotics consumed by COVID-19 patients in SICUs and the AMR rates, especially with different comorbidities.
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- 2021
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14. MRSA Clinical Isolates Harboring mecC Gene Imply Zoonotic Transmission to Humans and Colonization by Biofilm Formation
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Salman Hussain, Basit Zeshan, Rabiya Arshad, Saba Kabir, and Naveed Ahmed
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Animal Science and Zoology - Published
- 2023
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15. Biological and physical characterization of bacteriophage JHA against multidrug-resistant Acinetobacter baumannii
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Heba, Ajmal, Zubaida, Sharif, Basit, Zeshan, Nureen, Zahra, and Madiha, Khan
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Acinetobacter baumannii ,Bacteriophages ,Biological Assay ,Adsorption ,Anti-Bacterial Agents - Abstract
Due to the emergence of antibiotic resistance, bacteriophage therapy appears to be an ideal weapon to utilize against pathogenic bacteria. This study aimed to isolate, identify and characterize the lytic bacteriophage effective against the multidrug-resistant Acinetobacter baumannii clinical isolates. The isolated bacteriophage caused lysis by applying the double-layer agar technique on A. baumannii up to 99% in 18 hours of incubation at 37
- Published
- 2022
16. Assessment of the Phytochemical Analysis and Antimicrobial Potentials of
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Muhammad, Ramzan and Basit, Zeshan
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Antimicrobial resistance (AMR) has arisen as a global concern in recent decades. Plant extracts used in combination with antibiotics are promising against AMR, synergistically. The purpose of this study was to evaluate the component of the bitter ginger (
- Published
- 2022
17. Activity of plant essential oils against antibiotic resistant Enterococcus faecalis isolated from diarrheic children
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Tehreem, Ali, Arslan, Sarwar, Aftab Ahmad, Anjum, Tahir, Yaqub, Basit, Zeshan, Muhammad Asad, Ali, and Mian Muhammad, Khubaib Sattar
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RNA, Ribosomal, 16S ,Enterococcus faecalis ,Oils, Volatile ,Humans ,Microbial Sensitivity Tests ,Child ,Anti-Bacterial Agents - Abstract
Activity of plant essential oils and their fractions was evaluated against characterized isolates of antibiotic resistant Enterococcus faecalis recovered from diarrheic children. The isolates were confirmed by polymerase chain reaction (PCR) targeting 16S rRNA gene amplification followed by nucleotide sequencing and accession numbers retrieved were MW349990.1, MW349859.1, MW332122.1, MW356805.1, MW349975.1, MW349988.1, MW356790.1, MW356244.1, MW341593.1 and MW332549.1. These isolates were screened for antibiotic susceptibility to a wide range of antibiotic groups and mean zone of inhibition (ZOI) of all antibiotics were recorded. Antibacterial activity of plant essential oils (n=05) was checked against three antibiotic resistant isolates of E. faecalis. Three plant essential oils having higher ZOI including Cinnamomum verum, Syzygium aromaticum and Nigella sativa were used against resistant E. faecalis isolates to determine minimum inhibitory concentration (MIC). The lowest MIC observed was of S. aromaticum (11.39±3.94 mg mL
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- 2022
18. Evaluation of Antibiotic Resistance and Virulence Genes among Clinical Isolates of Pseudomonas aeruginosa from Cancer Patients
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Javed Iqbal Wattoo, Basit Zeshan, Zeshan Ali, Muhammad Naveed Aslam, Naveed Ahmed, and Mahpara Riaz
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Adult ,Male ,0301 basic medicine ,Imipenem ,antibiotic resistance ,Virulence Factors ,phenotypic characterization ,Ceftazidime ,Virulence ,Microbial Sensitivity Tests ,Biology ,chemotherapy ,medicine.disease_cause ,Meropenem ,Microbiology ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,Neoplasms ,Antineoplastic Combined Chemotherapy Protocols ,polycyclic compounds ,Tobramycin ,medicine ,Humans ,Pseudomonas Infections ,Child ,Pseudomonas aeruginosa ,Drug Resistance, Microbial ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,Prognosis ,bacterial infections and mycoses ,virulent genes ,Anti-Bacterial Agents ,P. aeruginosa ,030104 developmental biology ,Genes, Bacterial ,Amikacin ,030220 oncology & carcinogenesis ,Female ,Research Article ,Follow-Up Studies ,medicine.drug - Abstract
Objectives The objectives of this study were to evaluate P. Aeruginosa isolates from cancer patients for the phenotypic pattern of antibiotic resistance and to detect the gene responsible for virulence as well as antibiotic resistance. Methods A total of 227 P. aeruginosa isolates were studied and 11 antibiotics were applied for susceptibility testing. PCR detection of the genes BIC, TEM, IMP, SPM, AIM, KPC, NDM, GIM, VIM, OXA, toxA and oprI was done. Finally, the carbapenem resistant isolates were tested for phenotypic identification of carbapenemase enzyme by Modified Hodge test. Results The results showed that the isolates were resistant to imipenem (95%), cefipime (93%), meropenem (90%), polymixin B (71%), gentamicin (65%), ciprofloxacin (48%), ceftazidime (40%), levofloxacin (39%), amikacin (32%), tobramycin (28%) and tazobactum (24%). The PCR detection of the carbapenem resistant genes showed 51% isolates were positive for IMP, GIM and VIM, 38% for AIM and SPM, 30% for BIC, 20% for TEM and NDM, 17% for KPC and 15% for OXA. However, toxA and oprI genes were not detected. 154 carbapenem resistant isolates were found positive phenotypically for carbapenemase enzyme identification by Modified Hodge test. Conclusion The co-existence of multiple drug-resistant bodies and virulent genes has important implications for the treatment of patients. This study provides information about treating drug-resistant P. Aeruginosa and the relationship of virulent genes with phenotypic resistance patterns. .
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- 2020
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19. A Novel Pseudorabies Virus Vaccine Developed Using HDR-CRISPR/Cas9 Induces Strong Humoral and Cellular Immune Response in Mice
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Chen Luo, Qianqian Wang, Ruhai Guo, Jingnan Zhang, Jingya Zhang, Riteng Zhang, Xin Ma, Peixin Wang, Fathalrhman Eisa Addoma Adam, Basit Zeshan, Zengqi Yang, Yefei Zhou, and Xinglong Wang
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Swine Diseases ,Immunity, Cellular ,Cancer Research ,Pseudorabies ,Swine ,Granulocyte-Macrophage Colony-Stimulating Factor ,Antibodies, Viral ,Herpesvirus 1, Suid ,Mice ,Infectious Diseases ,Viral Envelope Proteins ,Virology ,Pseudorabies Vaccines ,Animals ,CRISPR-Cas Systems - Abstract
Outbreaks of Pseudorabies (PR) by numerous highly virulent and antigenic variant Pseudorabies virus (PRV) strains have been causing severe economic losses to the pig industry in China since 2011. However, current commercial vaccines are often unable to induce thorough protective immunity. In this study, a TK/gI/gE deleted recombinant PRV expressing GM-CSF was developed by using the HDR-CRISPR/Cas9 system. Here, a four-sgRNA along with the Cas9
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- 2022
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20. Evaluation of 16S rRNA methyltransferase gene in aminoglycosides resistant isolates of cancer patients
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Saba, Ghafoor, Basit, Zeshan, Madiha, Khan, and Saba, Kabir
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Adult ,Aged, 80 and over ,Male ,Adolescent ,Bacteria ,Infant ,Gene Expression Regulation, Bacterial ,Methyltransferases ,Microbial Sensitivity Tests ,Middle Aged ,Gene Expression Regulation, Enzymologic ,RNA, Bacterial ,Young Adult ,Child, Preschool ,Neoplasms ,RNA, Ribosomal, 16S ,Drug Resistance, Bacterial ,Pneumonia, Bacterial ,Humans ,Female ,Child ,Aged - Abstract
Aminoglycosides are used in empiric treatment of critically ill patients. Efficacy of aminoglycoside has been reduced due to dissemination of resistance. The aim of this study was to evaluate aminoglycoside resistance in cancer patients with pneumoniae. A total of 150 Bronchoalveolar lavage and Bronchial washing samples were collected from cancer patients. The samples were identified with standard microbiological procedures. Phenotypic susceptibility pattern of the isolates was determined against various groups of antibiotics such as Penicillins, Cephalosporins, Carbapenems, Monobactams, Aminoglycosides, Tetracyclins, Glycopeptides and Sulphonamides. The isolates with phenotypic resistant to aminoglycosides were further evaluated for the presence of armA gene. The strains of E. coli (12.5%), S. aureus (15.6%), Streptococcus (15.6%), Pseudomonas (18.7%) and K. pneumoniae (37.5%) were isolated. The phenotypic resistance profile showed highest resistance against aminoglycosides (Tobramycin, 53.1% Gentamicin and 50% Amikacin) followed by cephalosporins and sulfonamides group. The armA gene was detected in aminoglycoside resistant isolates. The overall genotypic resistance was evaluated as 21.8%. The armA gene was found in K.pneumoniae 23.5%, Pseudomonas 11.8% (4/24) and E. coli 5.9%. High level resistance to aminoglycosides raises therapeutic concern to health care professionals. These findings highlight the importance of effective monitoring and surveillance to the use of broad-spectrum antibiotics.
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- 2021
21. Molecular and Haematological Analysis of Dengue Virus-3 Among Children in Lahore, Pakistan
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Salma Batool, Modasrah Mazhar, Basit Zeshan, Hasnain Javed, Muhammad Kashif, and Muhammad Sohail Afzal
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Microbiology (medical) ,Serotype ,medicine.medical_specialty ,biology ,business.industry ,RNA virus ,Dengue virus ,medicine.disease_cause ,biology.organism_classification ,medicine.disease ,Microbiology ,Virus ,Dengue fever ,Flaviviridae ,Infectious Diseases ,Internal medicine ,Genotype ,medicine ,Viral disease ,business - Abstract
Background: Dengue virus (DENV) is an RNA virus belonging to the family Flaviviridae of the genus Flavivirus with worldwide distribution. Dengue fever is caused by any of four closely-related serotypes DENV, an emerging pandemic-prone viral disease in many regions of the world. Objectives: The present study aimed to determine the prevalence of dengue virus genotypes and serotypes in children aged below 15 years in Lahore, Pakistan. Methods: In this study, 112 serum samples were collected from clinically suspected dengue fever patients from March 2017 to December 2018 at different tertiary care hospitals in Lahore, Pakistan. Regarding the patients’ age, the samples were divided into four groups from A to D (i.e., 0 - 1, 1 - 5, 5 - 10, and 10 - 15 years of age). Rapid immuno-chromatography (ICT) test was conducted on the collected serum samples, followed by quantitative RT-PCR for serotype of dengue virus. Results: Out of 112 samples, 34 samples were diagnosed as DENV positive by the rapid ICT screening method. No virus was detected in groups A and B, while three samples were positive in group C (1 boy and two girls), and 31 samples (23 boys and 8 girls) were positive in group D. The results of quantitative RT-PCR exclusively showed DEN-3 serotype in all the ICT positive samples. The results indicated that the prevalence of DEN-3 serotype in children was 100%, indicating that DEN-3 serotype might cause severe epidemics in the future in Lahore, Pakistan. Hematological analysis revealed an increase in hematocrits in 41.1% dengue-positive cases. Leucopenia was prominent in 79.4% of the cases, while Thrombocytopenia was reported in 70.5% of the participants. The biochemical analysis also indicated an increase in liver enzymes in patients (ALT 88%, AST 79%), while the lower levels of cholesterol (69 %) and serum albumin (25%) were also observed. Conclusions: Dengue virus spreads and grows quickly worldwide over a highly short time interval. Dengue fever claims for a significant number of lives. This study would help individuals know about the status of laboratory parameters in dengue fever and detect how to overcome the prevalence of Dengue virus.
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- 2021
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22. Molecular Survey of Campylobacter jejuni in Broiler Chicken Farms in East Coast of Peninsular, Malaysia
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Abdul Muhaimin Wahab, Muhammad Afzal, Basit Zeshan, Naveed Ahmed, and Muhammad Naveed
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Veterinary medicine ,East coast ,Geography ,biology ,business.industry ,Broiler ,Animal Science and Zoology ,Poultry farming ,business ,biology.organism_classification ,Campylobacter jejuni - Published
- 2021
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23. Synthesis, Characterization and Antimicrobial Activity of Bacillus subtilis-Derived Silver Nanoparticles Against Multidrug-Resistant Bacteria
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Muhammad Sohail Afzal, Fatima Tariq, Muhammad Azmat Ullah Khan, Naveed Ahmed, and Basit Zeshan
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Microbiology (medical) ,biology ,Nanoparticle ,Bacillus subtilis ,medicine.disease_cause ,biology.organism_classification ,Antimicrobial ,Microbiology ,Silver nanoparticle ,Silver nitrate ,chemistry.chemical_compound ,Infectious Diseases ,chemistry ,Staphylococcus aureus ,medicine ,Escherichia coli ,Bacteria ,Nuclear chemistry - Abstract
Background: Silver nanoparticles (AgNPs) have received great attention in the biomedical field because of their intrinsic therapeutic properties. Nanoparticles synthesized from silver have been studied as antimicrobial, antiviral and anticancer agents and found particularly an attractive source for the development of a new and advance group of antimicrobial agents. Objectives: In the present study, silver nanoparticles were synthesized from non-pathogenic Bacillus subtilis strain to assess their antimicrobial activity. Methods: Different strains of Bacillus spp. were selected and screened against silver nitrate (AgNO3) toxicity. Finally, B. subtilis strain (FCBP-WB-0174) was selected based on its silver resistant nature, among other strains. Silver nanoparticles were synthesized and optimized from the supernatant of B. subtilis culture at 37°C by the reduction of silver ions using the various molar concentration of AgNO3. The synthesized AgNPs were characterized by UV-Vis spectrophotometry and scanning electron microscopy (SEM). These synthesized AgNPs were used for evaluating antimicrobial activity against four multidrug-resistant bacterial strains. Results: The silver ion reduction was found at a ratio of 1:1 from all the three molar concentrations (1, 2, and 3 mM) of AgNO3. The characterized nanoparticles were found to have a characteristic absorption peak at 426 nm, and the particles were found to have spherical shape under SEM with an average diameter of about 80 ± 0.18 nm, which was also reconfirmed using Zeta Sizer Nano. Prepared Silver nanoparticles have found potential antimicrobial activities against all tested pathogenic, including strains, e.g., Acinetobacter baumannii, Pseudomonas aeruginosa, Methicillin-Resistant Staphylococcus aureus(MRSA) and Escherichia coli. Conclusions: Effective AgNP’s were produced from selected B. subtilis strain, and the strain itself was resistant to AgNO3. The current study evidenced that biologically synthesized silver nanoparticles from B. subtilis has promising antimicrobial activities against pathogenic and multidrug-resistant bacteria.
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- 2020
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24. A NADC30-like PRRSV causes serious intestinal infections and tropism in piglets
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Xin Ma, PeiXin Wang, RiTeng Zhang, Yongxin Zhao, Yifan Wu, Chen Luo, Basit Zeshan, Zengqi Yang, Li Qiu, Yefei Zhou, and Xinglong Wang
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Swine Diseases ,China ,General Veterinary ,Swine ,Porcine Reproductive and Respiratory Syndrome ,Animals ,Porcine respiratory and reproductive syndrome virus ,Genome, Viral ,General Medicine ,Tropism ,Microbiology ,Phylogeny - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) causes huge economic loss to China's swine industry. Currently, a novel type 2 PRRSV, called the NADC30-like strain, is epidemic in numerous provinces of China. In this study, a NADC30-Like PRRSV strain was isolated in primary alveolar macrophage (PAM) cells from fecal samples collected from a local pig farm, which suffered severe diarrhea. A pathogenicity comparison study was conducted in 6-week-old piglets by inoculating highly pathogenic HP-PRRSV and NADC30-Like PRRSV isolates. RT-qPCR revealed detection of NADC30-Like PRRSV but not the HP-PRRSV in the intestine. PRRSV infection-related lesions were observed in the intestine were further confirmed by histopathological and immunohistochemical examination (IHC). In addition, severe virus infections were also detected by RT-qPCR. Based on clinical observation and pathogenicity experiments, we confirmed that NADC30-Like PRRSV gained more tissue tropism, especially in the small intestine. This may be the one reason explaining why NADC-Like 30 PRRSV become a major epidemic strain in China since the first outbreak in 2013.
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- 2022
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25. Circulating microRNAs in oncogenic viral infections: potential diagnostic biomarkers
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Basit Zeshan, Naveed Ahmed, and Kinza Hasham
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biology ,viruses ,General Chemical Engineering ,Hepatitis C virus ,General Engineering ,General Physics and Astronomy ,Merkel cell polyomavirus ,Cancer ,Hepatitis B ,biology.organism_classification ,medicine.disease_cause ,medicine.disease ,Epstein–Barr virus ,Virus ,Cancer cell ,medicine ,Cancer research ,General Earth and Planetary Sciences ,General Materials Science ,Oncovirus ,General Environmental Science - Abstract
Cancer is a leading cause of high death rate worldwide. One strategy to control the disease is the early diagnosis by novel biomarkers that express during early stage of the disease. The recent diagnostic strategies in cancer don’t have enough specificity to promote the detection of cancer at its beginning. Many biomarkers like protein biomarkers and metabolites are being used for diagnosis of various cancer types but miRNAs are excellent among them, because they have distinctive biochemical characteristics. Moreover, to raise the precision and capability of miRNA to diagnose cancer, the analyzing of both miRNAs and as well as selective mRNA will help in creating a more complete categorizer. Virus constitutes the cause of 20% of entire human cancer cases and both RNA and DNA viruses are linked with tumors in both animal and man. Even though many viruses can cause different tumors in animals, only some of them are linked with human cancers and are presently regarded as oncogenic viruses. These viruses include Human Papillomavirus (HPV), Hepatitis B (HBV) and Hepatitis C Virus (HCV), Epstein Barr Virus (EBV), Human Herpes Virus 8 (HHV8), Human T cell Leukemia Virus (HTLV) and Merkel Cell Polyomavirus (MCPyV). Expression data of miRNA in several cancers reveal that miRNA profile is different in cancer cells as compared to normal cells. So, miRNA could be useful biomarker for the detection of cancer. The present study strengthens a foundation and gives a logic to investigate the ability of miRNAs as circulating biomarkers in various cancers.
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- 2020
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26. Molecular Characterization of Mercury Resistant Bacteria Isolated from Tannery Wastewater
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Basit Zeshan, Arslan Sarwar, Aatif Amin, Mushtaq A. Saleem, and Zakia Latif
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Resistant bacteria ,Wastewater ,Chemistry ,Environmental chemistry ,chemistry.chemical_element ,Animal Science and Zoology ,Mercury (element) - Published
- 2020
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27. Cloning and Expression of Truncated Spike (Sf200) Glycoprotein of Infectious Bronchitis Virus (IBV) in Escherichia coli, and its Immunogenicity to Mice
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Maizan Mohamed, Javed Iqbal Wattoo, Mushtaq A. Saleem, Mohd Mokhtar Arshad, and Basit Zeshan
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Cloning ,biology ,Immunogenicity ,Avian infectious bronchitis ,biology.organism_classification ,medicine.disease_cause ,Molecular biology ,law.invention ,Restriction enzyme ,law ,Gene expression ,Recombinant DNA ,medicine ,Animal Science and Zoology ,Escherichia coli ,Gene - Abstract
Complete S1 gene of the Infectious Bronchitis Virus (IBV) was amplified and cloned into transfer vector. Truncated S1 gene designated as Sf200 (containing five antigenic sites located at 24–61, 291–398 and 497–543 amino acid residues of S1 glycoprotein) were amplified by overlap PCR, cloned into prokaryotic expression vector resulting pET-Sf200 and confirmed the construct by sequencing. The recombinant plasmid was identified by restriction enzyme and sequencing analysis. The in vitro expression of the truncated protein was analyzed in E. coli with a molecular weight of 38kDa determined through SDSPAGE and confirmed by Western blotting. The recombinant truncated protein was then purified from the culture media. The immunogenicity of the protein was studied in an animal experiment on mice, in which mice were injected subcutaneously. These findings suggest that the truncated Sf200 expressed in the pET- 32a (+) prokaryotic vector can be used as antigen to detect antibodies against IBV.
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- 2018
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28. Creep Feeding Supplemented with Roughages Improve Rumen Morphology in Pre-Weaning Goat Kids
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T. Kyaw, Nay Naing Htoo, M. A. K. G. Khan, Basit Zeshan, Aung Tun Khaing, and Erkihun Aklilu Woldegiorgis
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0301 basic medicine ,education ,0402 animal and dairy science ,Free access ,Live weight ,04 agricultural and veterinary sciences ,Biology ,040201 dairy & animal science ,Crossbreed ,humanities ,Creep feeding ,03 medical and health sciences ,Rumen ,030104 developmental biology ,Animal science ,Weaning ,Animal Science and Zoology ,human activities - Abstract
Boer crossbred goats (n=48) single born kids, seven-day-old (live weight 4.4±0.09kg) were divided into 3 treatment groups, each having 8 females and 8 males. The kids from first treatment group had free access to creep feed with roughage (CFR), second group had free access to creep feed without roughage (CF) while last group (control) had access to their does’ milk (DM) only. All kids had access to their dam’s milk. The kids were weaned at day 84 and two kids from each treatment group were sacrificed. The results showed that the rumen morphological characteristics, papillary surface area and keratinized layer of CFR (4.15mm2, 50.54µm), were not significantly different from CF (3.81mm2, 49.26µm) (P>0.05) but it was significantly different from kids in DM group (1.17mm2, 26.36µm) (P 0.05), while total surface area of rumen of both creep fed groups was significantly greater than DM group. The rumen tissue weight of creep-fed kids was 17% greater than those of milk fed kids. Overall, the present study showed that the creep feed supplementation to nursing goat kids improve rumen morphology. Read more at http://researcherslinks.com/current-issues/Creep-Feeding-Supplemented-with-Roughages/20/1/1134/html#lyAKjwLAfprvXT3I.99.
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- 2018
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29. The syringes catastrophe of the HIV outbreak in Faisalabad, Punjab, Pakistan
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Irfan Ahmad, Basit Zeshan, Mushtaq A. Saleem, Muhammad Naveed, and Amreen Zahra
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business.industry ,Virology ,Environmental health ,Human immunodeficiency virus (HIV) ,Medicine ,Outbreak ,business ,medicine.disease_cause - Published
- 2019
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30. A Comparative Study of CdTe Quantum Dots and CdTe@SiO2 Nanoparticles: Fabrication and Cytotoxicity in HEK293 Cells
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Jing Yang, Yiping Cui, Shuhong Xu, Chunlei Wang, Zhuyuan Wang, Asma Sadaf, Ruohu Zhang, and Basit Zeshan
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Materials science ,Biocompatibility ,Biomedical Engineering ,Nanoparticle ,Bioengineering ,General Chemistry ,Silicon Dioxide ,Condensed Matter Physics ,Cell Line ,Microscopy, Electron, Transmission ,Transmission electron microscopy ,Quantum dot ,Quantum Dots ,Cadmium Compounds ,Fluorescence microscope ,Humans ,Nanoparticles ,General Materials Science ,MTT assay ,Viability assay ,Tellurium ,Cytotoxicity ,Nuclear chemistry - Abstract
Quantum Dots have shown remarkable potentials in biomedical research. Herein, we reported the effects of CdTe quantum dots (QDs) and CdTe@SiO2 nanoparticles (NPs) on human embryonic kidney 293 (HEK 293A) cells with the aim of investigating their in vitro cytotoxicity. The CdTe@SiO2 particles were prepared by reverse microemulsion method. The structural morphology of the CdTe and hydrophilic silica-coated CdTe particles were characterized by transmission electron microscopy (TEM), ultraviolet-visible (UV-vis) spectrometry and photoluminescence (PL) spectrometry. The in vitro cytotoxicity of CdTe QDs and CdTe@SiO2 nanoparticles was assessed in 293A cells using standard MTT assay, western blot and fluorescent microscopy. The results showed that the CdTe and CdTe@SiO2 particles were relatively uniform with the diameter of about 3.8 nm, 75 nm respectively. The cell viability and the adhesion ability were similar to the control 293A cells. The level of the fibronectin protein expression was decreased with the increasing concentration of CdTe while the no effects were observed on expression of beta-actin in CdTe as well as CdTe@SiO2 treated cells even at highest concentration of 45 microg/mL which demonstrated their good biocompatibility to 293A cells. The results indicate that the CdTe@SiO2 nanoparticles are attractive candidates for biological imaging studies as expected.
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- 2012
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31. Inhibition of encephalomyocarditis virus replication by shRNA targeting 1D and 3AB genes in vitro and in vivo
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Xianwei Wang, Kangfu Jiang, Yufeng Li, Basit Zeshan, Juan Bai, and Ping Jiang
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Genes, Viral ,viruses ,Molecular Sequence Data ,Gene Expression ,Biology ,Virus Replication ,Antiviral Agents ,Sudden death ,Virus ,Cell Line ,Small hairpin RNA ,Mice ,Plasmid ,RNA interference ,Cricetinae ,Virology ,Cardiovirus Infections ,Genetics ,Animals ,Vector (molecular biology) ,Encephalomyocarditis virus ,RNA, Small Interfering ,Molecular Biology ,Gene ,Mice, Inbred BALB C ,Brain ,Sequence Analysis, DNA ,General Medicine ,Viral Load ,Survival Analysis ,Disease Models, Animal ,Treatment Outcome ,Viral replication ,Plasmids - Abstract
Encephalomyocarditis virus (EMCV) could infect many host species and cause acute myocarditis and sudden death in pre-weaned piglets. It was necessary to develop new antiviral strategies for the treatment of the virus infection. Here, four plasmids expressing shRNA (small hairpin RNA) targeted to 1D or 3AB protein genes of EMCV were constructed and their inhibition efficiency on the replication of EMCV was evaluated in both BHK21 cells and mice. The results showed that three out of those four shRNA constructs could significantly inhibit EMCV replication in BHK21 cells on the levels of viral RNA and protein. Moreover, it was found that the shRNAs could suppress significantly the load of EMCV in the brain tissue of the mice pretreated with the constructs for 6-24 h. The clinical signs and pathological lesions of the mice in the groups inoculated with the shRNA constructed were milder obviously, compared with those in pSUPER-mN3 and challenge control groups. The survival rates of mice inoculated with pSUPER-3AB-1, pSUPER-3AB-2, and pSUPER-1D-1 for 12 h was 100, 80, and 40%, respectively, while, in the control groups it was only 20%. It indicated that the vector-based shRNA targeting to 3AB and 1D genes might be a potential anti-EMCV strategy.
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- 2011
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32. Protective immune responses induced by in ovo immunization with recombinant adenoviruses expressing spike (S1) glycoprotein of infectious bronchitis virus fused/co-administered with granulocyte-macrophage colony stimulating factor
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Ping Jiang, Wenliang Li, Basit Zeshan, Xinglong Wang, and Muhammad Hassan Mushtaq
- Subjects
animal structures ,Recombinant Fusion Proteins ,T-Lymphocytes ,Infectious bronchitis virus ,Antibodies, Viral ,Kidney ,In ovo ,Microbiology ,Virus ,Adenoviridae ,Interferon-gamma ,Immune system ,Viral Envelope Proteins ,Immunity ,Animals ,Humans ,Specific-pathogen-free ,Immunity, Cellular ,Membrane Glycoproteins ,General Veterinary ,biology ,Vaccination ,Granulocyte-Macrophage Colony-Stimulating Factor ,Viral Vaccines ,General Medicine ,biology.organism_classification ,Virology ,Immunity, Humoral ,Specific Pathogen-Free Organisms ,HEK293 Cells ,Spike Glycoprotein, Coronavirus ,embryonic structures ,biology.protein ,Interleukin-4 ,Antibody ,Avian infectious bronchitis virus ,Coronavirus Infections ,Chickens - Abstract
Infectious bronchitis virus (IBV) causes tremendous economic losses associated with production inefficiencies and mortality in poultry industry worldwide. In the present report, the recombinant adenoviruses expressing chicken granulocyte-macrophage colony stimulating factor (GM-CSF) and S1 gene of nephropathogenic IBV were constructed and characterized. Then, the immunological efficacy and protection against homologous IBV challenge were assessed in specific pathogen free (SPF) chickens. The results showed that the chickens vaccinated in ovo with rAd-S1, rAd-GM-S1 (GM-CSF fused with S1 using glycine linkers) and rAd-GM-CSF plus rAd-S1 (co-administered) developed specific anti-IBV HI antibodies. Moreover, the fusion of the GM-CSF markedly increased spleen cell proliferation and IFN-γ production while mild increased in IL-4 production, which demonstrated the enhancement of cell-mediated immune responses. Following challenge with IBV, the chickens in the group vaccinated with rAd-S1 fused or co-administered with GM-CSF had fewer nephropathic lesions and showed 100% protection as compared to that of rAd-S1 alone which showed 70% protection. It indicated that the single dose in ovo vaccination of the GM-CSF fused or co-administered with S1 of IBV could enhance significantly the humoral, cellular immune responses and provide complete protection against nephropathogenic IBV challenge. This finding may provide basic information for effective in ovo vaccines design against IBV.
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- 2011
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33. Mitigation of ruminant methane production: current strategies, constraints and future options
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Muhammad Iqbal, Yanfen Cheng, Weiyun Zhu, and Basit Zeshan
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Methane emissions ,Physiology ,Natural resource economics ,business.industry ,food and beverages ,General Medicine ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Hazard ,Methane ,Biotechnology ,chemistry.chemical_compound ,chemistry ,Ruminant ,Production (economics) ,Genetic selection ,Methane production ,business ,Productivity - Abstract
Mitigating methane losses from cattle has economic as well as environmental benefits. The aim of this paper is to review the current approaches in relation to associated advantages and disadvantages and future options to reduce enteric methane emission from cattle. Current technologies can be broadly grouped into those that increase productivity of the animal (improved nutrition strategies) so that less methane is produced per unit of meat or milk, and those that directly modify the rumen fermentation so that less methane is produced in total. Data suggest that many of these practices are not appropriate for long term mitigation of methane emissions in ruminants because of their constraints. So it is necessity to develop long term strategies in suppressing methane production. An integrated research investigating animal, plant, microbe and nutrient level strategies would offer a long term solution of methane production. Genetic selection of animals, vaccination, probiotics, prebiotics and plant improvement are the most promising options of all the future approaches discussed. These approaches will reduce enteric methane production without any hazard to animal or environment.
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- 2008
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34. Aberrant expression of serum miRNAs in schizophrenia
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Zhongdang Xiao, Jinglun Du, Tianyu Wang, Gaofeng Liang, Wenting Shi, Shiping Xie, Basit Zeshan, Yuhua Qi, and Shuchun Li
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Adult ,Male ,Serum ,Disease status ,Adolescent ,Bioinformatics ,Young Adult ,mental disorders ,microRNA ,Medicine ,Humans ,Family history ,Gene ,Biological Psychiatry ,Risperidone ,business.industry ,Middle Aged ,medicine.disease ,Serum samples ,Psychiatry and Mental health ,MicroRNAs ,Gene Expression Regulation ,ROC Curve ,Schizophrenia ,Area Under Curve ,Female ,business ,medicine.drug ,Diagnosis of schizophrenia ,Antipsychotic Agents - Abstract
The circulating miRNAs are sufficiently stable and detectable to serve as clinical biomarkers as recent studies have revealed that the aberrant expression of circulating miRNAs can directly reflect disease status. Based on the analysis of the data (using miRanda software, TargetScan software and SOLID high-throughput sequencing) obtained from the literature, Schizophrenia Gene database, NCBI database, the quantification of the nine miRNAs in the serum samples of 115 patients suffering from schizophrenia and 40 healthy individuals using qRT-PCR and semi-nested qRT-PCR was conducted. The results suggested that the miR-181b, miR-219-2-3p, miR-346, miR-195, miR-1308, miR-92a, miR-17, miR-103 and let-7g are the key players to reflect the schizophrenia illnesses status and may serve as candidate biomarkers for diagnosis of schizophrenia. In addition, we also found that the risperidone improved the serum miR-346 level of schizophrenia significantly, and therefore may not be an effective drug in regulating serum miR-346 level of schizophrenia. Furthermore, the expression level of serum miRNAs levels and schizophrenia patients were regardless of family history subtypes, ages, and gender. Collectively, these findings suggested that the serum miRNAs have strong potential to reflect schizophrenia disease status. To the best of our knowledge, this is the first report demonstrating the analysis of the circulating miRNAs in schizophrenia.
- Published
- 2011
35. GM-CSF fused with GP3 and GP5 of porcine reproductive and respiratory syndrome virus increased the immune responses and protective efficacy against virulent PRRSV challenge
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Ping Jiang, Jun-xing Li, Yufeng Li, Basit Zeshan, Jun Cao, Xinglong Wang, and Xianwei Wang
- Subjects
Cancer Research ,Swine ,viruses ,animal diseases ,Recombinant Fusion Proteins ,Porcine Reproductive and Respiratory Syndrome ,Virulence ,Viremia ,Lymphocyte Activation ,law.invention ,Interferon-gamma ,Mice ,Immune system ,Viral Envelope Proteins ,Interferon ,law ,Virology ,medicine ,Animals ,Porcine respiratory and reproductive syndrome virus ,Lung ,Membrane Glycoproteins ,biology ,virus diseases ,Granulocyte-Macrophage Colony-Stimulating Factor ,respiratory system ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,medicine.disease ,Vaccination ,Infectious Diseases ,Immunology ,Antibody Formation ,DNA, Viral ,biology.protein ,Recombinant DNA ,Female ,Interleukin-4 ,Antibody ,medicine.drug - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) has recently caused catastrophic losses in swine industry worldwide. Current vaccination strategies only provide a limited protection against PRRSV infection. This study was aimed to construct the recombinant adenovirus co-expressing GP3 and GP5 of highly pathogenic PRRSV fused with swine granulocyte-macrophage colony stimulating factor (GM-CSF) (rAd-GF35), and to detect the immune response in mice and pigs. The results showed that the rAd-GF35 could induce significantly higher PRRSV-specific neutralizing antibodies than the recombinant adenovirus only expressing GP3 and GP5 (rAd-GP35). Moreover, the fusion of GM-CSF markedly increased the secretion of IFN-gamma and IL-4 in PRRSV-stimulated mice lymphocytes culture and pigs sera. Following challenge with PRRSV, piglets inoculated with recombinant rAd-GF35 had lighter clinical signs, lower viremia and less gross lesion of lungs, as compared to that of rAd-GP35 immunized group. It demonstrated that GM-CSF fused with GP3 and GP5 of PRRSV could significantly enhance the humoral and cellular immune responses and provide protection against PRRSV challenge in pigs. The recombinant adenovirus rAd-GF35 might be an attractive candidate vaccine for the prevention and control of highly pathogenic PRRSV infection.
- Published
- 2008
36. HSP70 fused with GP3 and GP5 of porcine reproductive and respiratory syndrome virus enhanced the immune responses and protective efficacy against virulent PRRSV challenge in pigs
- Author
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Xinglong Wang, Ping Jiang, Jun Cao, Basit Zeshan, Xianwei Wang, Yufeng Li, and Jun-xing Li
- Subjects
Swine ,animal diseases ,Recombinant Fusion Proteins ,Genetic Vectors ,Porcine Reproductive and Respiratory Syndrome ,Enzyme-Linked Immunosorbent Assay ,Antibodies, Viral ,Virus ,Adenoviridae ,Body Temperature ,Arterivirus ,Haemophilus parasuis ,Interferon-gamma ,Viral Proteins ,Immune system ,Adjuvants, Immunologic ,Bacterial Proteins ,Viral Envelope Proteins ,Neutralization Tests ,Animals ,HSP70 Heat-Shock Proteins ,Porcine respiratory and reproductive syndrome virus ,Viremia ,Neutralizing antibody ,Lung ,Glycoproteins ,Vaccines, Synthetic ,General Veterinary ,General Immunology and Microbiology ,biology ,Public Health, Environmental and Occupational Health ,biology.organism_classification ,Porcine reproductive and respiratory syndrome virus ,Virology ,eye diseases ,Vaccination ,Infectious Diseases ,Humoral immunity ,biology.protein ,Molecular Medicine ,Interleukin-4 ,Antibody - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) has been mainly responsible for the heavy economic losses in pig industry all over the world. Current vaccination strategies provide only a limited protection. In this study recombinant adenoviruses expressing GP3/GP5 of highly pathogenic PRRSV and heat shock protein 70 (HSP70) gene of Heamophilus parasuis were constructed, and the immune responses and protective efficacy against homologous challenge were examined in pigs. The results showed that all animals vaccinated with rAd-GP35 (co-expressing GP3-GP5), rAd-HS35 and rAd-HSA35 (co-expressing GP3-GP5 fused with HSP70 using different linkers), developed specific anti-PRRSV ELISA antibody and neutralizing antibody. The humoral immune responses of rAd-HS35, especially rAd-HSA35 containing 2A of FMDV between HSP70 and GP3 gene, were significantly higher than that of rAd-GP35. Moreover, the fusion of HSP70 markedly induced both IFN-gamma and IL-4 in pigs' sera. Following challenge with PRRSV, pigs inoculated with recombinant rAd-HS35 and rAd-HSA35 showed lighter clinical signs, lower viremia and less pathological lesion of lungs, as compared to those in rAd-GP35 group. Moreover, the protective efficiency induced by rAd-HSA35 was higher than that of rAd-HS35. It indicated that HSP70 fused with GP3 and GP5 of PRRSV could induce enhanced immune responses and provide protection against virulent PRRSV challenge in pigs. The recombinant adenovirus rAd-HSA35 might be an attractive candidate vaccine for the prevention and control of highly pathogenic PRRSV infections.
- Published
- 2008
37. Inhibition of porcine reproductive and respiratory syndrome virus replication by adenovirus-mediated RNA interference both in porcine alveolar macrophages and swine
- Author
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Nianqu Chen, Guangming Li, Biyue Wu, Yufeng Li, Juan Bai, Juan Huang, Basit Zeshan, Jun Cao, Xianwei Wang, and Ping Jiang
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Serum ,Swine ,viruses ,animal diseases ,Porcine Reproductive and Respiratory Syndrome ,medicine.disease_cause ,Virus Replication ,Virus ,Viral vector ,Adenoviridae ,Cell Line ,Small hairpin RNA ,Transduction, Genetic ,Virology ,Macrophages, Alveolar ,medicine ,Animals ,Porcine respiratory and reproductive syndrome virus ,Lung ,Pharmacology ,biology ,Genetic Therapy ,Viral Load ,biology.organism_classification ,Porcine reproductive and respiratory syndrome virus ,Mastadenovirus ,Viral replication ,RNA Interference ,Viral load - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) has been mainly responsible for the heavy economic losses in many swine-producing regions. Current vaccination strategies and antiviral drugs provide only limited protection. Consequently, there is a need to develop a new antiviral strategy. In this study, two recombinant adenoviruses expressing short-hairpin RNAs (shRNAs) directed against ORF1b of PRRSV S1 strain were constructed and the inhibition of PRRSV replication was determined. The results showed that pretreatment with these shRNAs delivered by recombinant adenovirus could induce a significant inhibition of viral RNA and protein level in Marc-145 cells infected with PRRSV S1 strains. One recombinant adenovirus (rAd-P2) was found to be also effective in inhibiting the replication of highly virulent PRRSV SY0608 strain in Marc-145 cells and porcine alveolar macrophages at both the protein and ORF1b mRNA level. The antiviral effect was dose-dependent and sustained for at least 96 h. Twenty 6-week old piglets were assigned to four groups each with five piglets. Groups 1 and 2 were inoculated intramuscularly with rAd-P2 and mock construct rAd-mP2 individually. After 24 h, groups 1, 2 and 3 were challenged intramuscularly with the SY0608 strain. Group 4 remained unchallenged but with PBS as mock. The results showed that the viral load of PRRSV in serum and lung tissue of swine was suppressed effectively by rAd-P2. The clinical signs and pathological lesions in the pigs inoculated with rAd-P2 were milder than those in rAd-mP2 negative and PRRSV control. These results indicated that shRNAs mediated by the adenovirus could inhibit PRRSV infection sufficiently in vitro as well as in vivo . RNAi mediated by recombinant adenovirus might be a potential new tool for controlling PRRSV infection. Of course, the protective efficiency of rAd-P2 should be made by using a large number of pigs in future.
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- 2008
38. Effective suppression of replication of porcine reproductive and respiratory syndrome virus by adenovirus-mediated small interfering RNAs targeting ORF1b, 5 and 7 genes
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Ping Jiang, Yufeng Li, Basit Zeshan, Juan Huang, Guangming Li, Yijun Du, and Xianwei Wang
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biology ,Swine ,viruses ,animal diseases ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,medicine.disease_cause ,Virology ,Virus ,Adenoviridae ,Cell Line ,Arterivirus ,Small hairpin RNA ,Viral Proteins ,Viral replication ,RNA interference ,Macrophages, Alveolar ,medicine ,Gene silencing ,Animals ,Porcine respiratory and reproductive syndrome virus ,RNA, Small Interfering ,Cells, Cultured - Abstract
Porcine reproductive and respiratory syndrome virus has caused hundreds of thousands of deaths in pig farms in many swine-producing areas in the world in recent years. However, at present there is no effective method to prevent and control the disease, and there is a need to develop new antiviral strategies. In this study, four recombinant adenoviruses expressing shRNAs targeting ORF1b, ORF5 and ORF7 were constructed, and it was found that they could down-regulate effectively specific gene expression and inhibit viral replication in MARC-145 cells when compared to the controls. They could also inhibit effectively PRRSV replication in porcine alveolar macrophages. The inhibition effect was dose-dependent and could be sustained for at least 96h in macrophages. In addition, PRRSV replication could be suppressed significantly by shRNA in cells infected previously or simultaneously with PRRSV. The results indicated that the shRNA-expressing rAd5 targeting to various gene regions of PRRSV might be a potential anti-PRRSV strategy.
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- 2008
39. Construction and identification of a recombinant adenovirus expressing bioactive GM-CSF: Implication for GM-CSF secreting tumor vaccines design
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Nh. Othman, S. Ahmed, and Basit Zeshan
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Microbiology (medical) ,Oncolytic adenovirus ,Antigen presentation ,Transfection ,Biology ,Colony-stimulating factor ,Molecular biology ,In vitro ,law.invention ,Infectious Diseases ,medicine.anatomical_structure ,Cell culture ,law ,medicine ,Recombinant DNA ,Bone marrow - Abstract
Introduction Granulocyte-monocyte colony stimulating factor (GM-CSF) has been reported to to mediate antitumor effects through stimulation of various antigen presentation cells. Clearly, these properties make GM-CSF a potent adjuvant. Therefore, an oncolytic adenovirus coding for GMCSF was engineered. Objective Contraction, identification and characterization of recombinant adenovirus encoding GM-CSF. Methods In this study, a recombinant adenovirus expressing GM-CSF (rAd-GM) was constructed and characterized. Homologous recombination in bacteria followed by transfection of recombinant plasmid into a mammalian packaging cell line, viral production was conveniently followed by the gene incorporated into the viral backbone. Results & Discussion We also showed that the construct produced a 12 kDa recombinant protein which stimulated colony formation in bone marrow cells in vitro , indicating that the recombinant GM-CSF was biologically active. Conclusion Future work will demonstrate the rAd-GM mediated antitumor immunity in rats with experimentally induced breast cancer.
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- 2014
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40. Dissection of Influenza A Virus M1 Protein: pH-Dependent Oligomerization of N-Terminal Domain and Dimerization of C-Terminal Domain
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Zhang, Ke, primary, Wang, Zhao, additional, Liu, Xiaoling, additional, Yin, Changcheng, additional, Basit, Zeshan, additional, Xia, Bin, additional, and Liu, Wenjun, additional
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- 2012
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41. Novel genetic reassortants in H9N2 influenza A viruses and their diverse pathogenicity to mice
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Lu Lu, Wenjun Liu, Yi Zhang, Lei Sun, Basit Zeshan, Jinhua Liu, Yuhai Bi, Jing Li, Yanbo Yin, Zhuoming Qin, and Huijie Gao
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China ,animal diseases ,viruses ,genotype ,Molecular Sequence Data ,avian influenza virus ,Biology ,medicine.disease_cause ,Virus ,lcsh:Infectious and parasitic diseases ,Evolution, Molecular ,Mice ,Orthomyxoviridae Infections ,Virology ,Reassortant Viruses ,Genotype ,Pandemic ,medicine ,Influenza A virus ,Influenza A Virus, H9N2 Subtype ,pathogenicity ,Animals ,Cluster Analysis ,lcsh:RC109-216 ,Gene ,Phylogeny ,Genetics ,Mice, Inbred BALB C ,Research ,food and beverages ,virus diseases ,Sequence Analysis, DNA ,H9N2 ,Influenza A virus subtype H5N1 ,Disease Models, Animal ,Infectious Diseases ,reassortant ,Viral evolution ,Influenza in Birds ,RNA, Viral ,Female ,Chickens - Abstract
Background H9N2 influenza A viruses have undergone extensive reassortments in different host species, and could lead to the epidemics or pandemics with the potential emergence of novel viruses. Methods To understand the genetic and pathogenic features of early and current circulating H9N2 viruses, 15 representative H9N2 viruses isolated from diseased chickens in northern China between 1998 and 2010 were characterized and compared with all Chinese H9N2 viruses available in the NCBI database. Then, the representative viruses of different genotypes were selected to study the pathogenicity in mice with the aim to investigate the adaptation and the potential pathogenicity of the novel H9N2 reassortants to mammals. Results Our results demonstrated that most of the 15 isolates were reassortants and generated four novel genotypes (B62-B65), which incorporated the gene segments from Eurasian H9N2 lineage, North American H9N2 branch, and H5N1 viruses. It was noteworthy that the newly identified genotype B65 has been prevalent in China since 2007, and more importantly, different H9N2 influenza viruses displayed a diverse pathogenicity to mice. The isolates of the 2008-2010 epidemic (genotypes B55 and B65) were lowly infectious, while two representative viruses of genotypes B0 and G2 isolated from the late 1990s were highly pathogenic to mice. In addition, Ck/SD/LY-1/08 (genotype 63, containing H5N1-like NP and PA genes) was able to replicate well in mouse lungs with high virus titers but caused mild clinical signs. Conclusion Several lines of evidence indicated that the H9N2 influenza viruses constantly change their genetics and pathogenicity. Thus, the genetic evolution of H9N2 viruses and their pathogenicity to mammals should be closely monitored to prevent the emergence of novel pandemic viruses.
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- 2011
42. Identification of VP1 peptides diagnostic of encephalomyocarditis virus from swine.
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Juan Bai, Xinhui Chen, Kangfu Jiang, Basit Zeshan, and Ping Jiang
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C-terminal residues ,ENCEPHALOMYOCARDITIS virus ,PICORNAVIRUSES ,MYOCARDITIS ,CARDIOMYOPATHIES - Abstract
Background Encephalomyocarditis virus (EMCV) can cause myocarditis, respiratory failure, reproductive failure, and sudden death in pre-weaned piglets, which has been isolated in China. EMCV VP1 protein was one of the most important structural proteins and played an important role in the protective immunity. In this study, 10 monoclonal antibodies (McAbs) against EMCV VP1 were screened and identified. Results Epitope mapping results indicated that McAbs (6E11, 7A7, 7C9) specifically recognized the linear epitopes V(2)ENAEK(7), McAbs (1D1, 2A2, 5A1, 5A11, 5G1) recognized the epitope F(19)VAQPVY(25), and McAbs 1G8 and 3A9 recognized P(42)IGAFTVK(49). Protein sequence alignment of VP1 with 16 EMCV isolates indicated that the epitope F(19)VAQPVY(25) was conserved in all the reference strains. The epitopes P(42)IGAFTVK(49) and V(2)ENAEK(7) only had 1 or 2 variable amino acid among the reference strains. The 3D model analysis results showed that these epitopes presented as spheres were shown within the context of the complete particle. Conclusions In this study, ten McAbs against EMCV VP1 were developed and three B-cells epitopes (2-7aa, 19-25aa and 42-49aa) were defined in VP1. All the results herein will promote the future investigations into the function of VP1 of EMCV and development of diagnostic methods of EMCV. [ABSTRACT FROM AUTHOR]
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- 2014
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43. Dissection of Influenza A Virus M1 Protein: pH-Dependent Oligomerization of N-Terminal Domain and Dimerization of C-Terminal Domain.
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Ke Zhang, Zhao Wang, Xiaoling Liu, Changcheng Yin, Basit, Zeshan, Bin Xia, and Wenjun Liu
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INFLUENZA A virus ,OLIGOMERIZATION ,MONOMERS ,HYDROGEN-ion concentration ,OLIGOMERS ,VIRUS diseases - Abstract
Background: The matrix 1 (M1) protein of Influenza A virus plays many critical roles throughout the virus life cycle. The oligomerization of M1 is essential for the formation of the viral matrix layer during the assembly and budding process. Methodology/Principal Findings: In the present study, we report that M1 can oligomerize in vitro, and that the oligomerization is pH-dependent. The N-terminal domain of M1 alone exists as multiple-order oligomers at pH 7.4, and the C-terminal domain alone forms an exclusively stable dimer. As a result, intact M1 can display different forms of oligomers and dimer is the smallest oligomerization state, at neutral pH. At pH 5.0, oligomers of the N-terminal domain completely dissociate into monomers, while the C-terminal domain remains in dimeric form. As a result, oligomers of intact M1 dissociate into a stable dimer at acidic pH. Conclusions/Significance: Oligomerization of M1 involves both the N- and C-terminal domains. The N-terminal domain determines the pH-dependent oligomerization characteristic, and C-terminal domain forms a stable dimer, which contributes to the dimerization of M1. The present study will help to unveil the mechanisms of influenza A virus assembly and uncoating process. [ABSTRACT FROM AUTHOR]
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- 2012
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44. Identification of VP1 peptides diagnostic of encephalomyocarditis virus from swine
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Ping Jiang, Basit Zeshan, Kangfu Jiang, Xinhui Chen, and Juan Bai
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China ,medicine.drug_class ,Swine ,viruses ,Context (language use) ,Biology ,Monoclonal antibody ,Antibodies, Viral ,Sudden death ,Virus ,Epitope ,03 medical and health sciences ,Epitopes ,Antigen ,Virology ,medicine ,Cardiovirus Infections ,Animals ,Encephalomyocarditis virus ,Antigens, Viral ,030304 developmental biology ,Encephalomyocarditis virus (EMCV) ,Swine Diseases ,0303 health sciences ,030306 microbiology ,Research ,Antibodies, Monoclonal ,VP1 ,McAbs ,3. Good health ,Epitope mapping ,Infectious Diseases ,biology.protein ,Epitopes, B-Lymphocyte ,Capsid Proteins ,Antibody ,Epitope Mapping - Abstract
Background Encephalomyocarditis virus (EMCV) can cause myocarditis, respiratory failure, reproductive failure, and sudden death in pre-weaned piglets, which has been isolated in China. EMCV VP1 protein was one of the most important structural proteins and played an important role in the protective immunity. In this study, 10 monoclonal antibodies (McAbs) against EMCV VP1 were screened and identified. Results Epitope mapping results indicated that McAbs (6E11, 7A7, 7C9) specifically recognized the linear epitopes V(2)ENAEK(7), McAbs (1D1, 2A2, 5A1, 5A11, 5G1) recognized the epitope F(19)VAQPVY(25), and McAbs 1G8 and 3A9 recognized P(42)IGAFTVK(49). Protein sequence alignment of VP1 with 16 EMCV isolates indicated that the epitope F(19)VAQPVY(25) was conserved in all the reference strains. The epitopes P(42)IGAFTVK(49) and V(2)ENAEK(7) only had 1 or 2 variable amino acid among the reference strains. The 3D model analysis results showed that these epitopes presented as spheres were shown within the context of the complete particle. Conclusions In this study, ten McAbs against EMCV VP1 were developed and three B-cells epitopes (2-7aa, 19-25aa and 42-49aa) were defined in VP1. All the results herein will promote the future investigations into the function of VP1 of EMCV and development of diagnostic methods of EMCV.
- Full Text
- View/download PDF
45. Detection of equine herpesvirus infection: Conventional versus molecular approaches
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Abdullah, N. F., Basit Zeshan, Redhuan, N. E. M., Mohamed, M., and Daud, N. H. A.
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