47 results on '"Bartik K"'
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2. Discussions of Session 1
- Author
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WALSH, CHRISTOPHER T., primary, BARTIK, K., additional, and GOORMAGHTIGH, E., additional
- Published
- 2014
- Full Text
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3. Aromatic-carbohydrate interactions: an NMR and computational study of model systems
- Author
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Vandenbussche, S., Díaz, Dolores, Fernández-Alonso, M. Carmen, Pan, W., Vincent, S.P., Cuevas, Gabriel, Cañada, F. Javier, Jiménez-Barbero, Jesús, Bartik, K., Vandenbussche, S., Díaz, Dolores, Fernández-Alonso, M. Carmen, Pan, W., Vincent, S.P., Cuevas, Gabriel, Cañada, F. Javier, Jiménez-Barbero, Jesús, and Bartik, K.
- Abstract
The interactions of simple carbohydrates with aromatic moieties have been investigated experimentally by NMR spectroscopy. The analysis of the changes in the chemical shifts of the sugar proton signals induced upon addition of aromatic entities has been interpreted in terms of interaction geometries. Phenol and aromatic amino acids (phenylalanine, tyrosine, tryptophan) have been used. The observed sugar-aromatic interactions depend on the chemical nature of the sugar, and thus on the stereochemistries of the different carbon atoms, and also on the solvent. A preliminary study of the solvation state of a model monosaccharide (methyl beta-galactopyranoside) in aqueous solution, both alone and in the presence of benzene and phenol, has also been carried out by monitoring of intermolecular homonuclear solvent-sugar and aromatic-sugar NOEs. These experimental results have been compared with those obtained by density functional theory methods and molecular mechanics calculations
- Published
- 2008
4. SESSION 1: NEW CHEMISTRY IN THE EXPANDING PROTEIN UNIVERSE.
- Author
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WALSH, CHRISTOPHER T., BARTIK, K., and GOORMAGHTIGH, E.
- Subjects
- *
PHEROMONES , *METHYLTRANSFERASES , *RNA interference , *CHEMISTRY , *MOLECULAR biology - Published
- 2014
5. Stereochemical studies by molecular palpation
- Author
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Locci, E., primary, Bartik, K., additional, Segebarth, N., additional, Luhmer, M., additional, and Reisse, J., additional
- Published
- 2004
- Full Text
- View/download PDF
6. About a double-body immersion horn system to be used for quantitative sonochemical studies
- Author
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Reisse, J., primary, Bartik, K., additional, Fabre, O., additional, and Vandercammen, J., additional
- Published
- 2000
- Full Text
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7. ChemInform Abstract: Some Physicochemical Aspects of So‐Called “Homogeneous Sonochemistry”
- Author
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Reisse, J., primary, Caulier, T., additional, Dekerckheer, C., additional, Kegelaers, Y., additional, Segebarth, N., additional, and Bartik, K., additional
- Published
- 1999
- Full Text
- View/download PDF
8. Measurement of the individual pKa values of acidic residues of hen and turkey lysozymes by two-dimensional 1H NMR
- Author
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Bartik, K., primary, Redfield, C., additional, and Dobson, C.M., additional
- Published
- 1994
- Full Text
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9. Group Contribution Analysis of Xenon NMR Solvent Shifts
- Author
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Luhmer, M. and Bartik, K.
- Abstract
129Xe gas-to-solution NMR chemical shifts for xenon dissolved in pure n-alkanes, n-alkyl alcohols, n-alkyl carboxylic acids, di-n-alkyl ketones, and cycloalkanes and in solutions of lauric acid in n-heptane are reported. The medium effect corrected for solvent density is found to be linearly dependent on the number of carbon atoms except for the shortest members of the series of linear solvents. The same slope is observed for all the linear solvents; the slope for the cycloalkanes is significantly different. These results are interpreted on the basis of a group contribution analysis. The relative contribution of methyl and methylene groups in linear solvents is found to be in very good agreement with the relative Xe−CH
3 and Xe−CH2 dispersive interaction energies. The 129Xe chemical shifts for solutions of lauric acid in n-heptane calculated from the group contributions are in excellent agreement with the experimental values. The deshielding effect of the methylene group in cycloalkanes and the 129Xe chemical shift measured in the shortest members of the linear series of solvent are discussed in terms of intermolecular shielding functions and distributions of groups in the solvation shell of the Xe atom.- Published
- 1997
10. Pulsed Sonochemistry
- Author
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Dekerckheer, C., Bartik, K., Lecomte, J.-P., and Reisse, J.
- Abstract
Very few papers are devoted to the study of the chemical effects of pulsed ultrasound in the low-frequency range. The present work consists of a systematic experimental study of the effects of pulsed ultrasound in the 20 kHz range using an immersed titanium horn. The light scattered by the bubble cloud, the acoustic pressure, and the sonochemical activity were measured. The sonochemical activity was studied by measuring the light emitted by a fast chemiluminescent reaction (oxidation of luminol). The chemiluminescence behavior observed at 20 kHz was compared with the behavior observed at 1.7 MHz. The chemiluminescence takes time to install when sonication starts and, at 20 kHz, the luminescence intensity decreases monoexponentially when sonication stops. Interestingly, at 1.7 MHz, the luminescence intensity decreases biexponentially with an important fast component. The interpretation of these various behaviors requires that the acoustical characteristics of the ultrasound generator and of the vessel, and also the properties of the bubble field, be considered.
- Published
- 1998
11. Development of a water-soluble ouroboros-like calix[6]arene-trisimidazole-based ligand for enhanced binding of zinc.
- Author
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Carpentier R, Lavendomme R, Colasson B, Bartik K, and Jabin I
- Abstract
Increasing the thermodynamic stability of metal complexes in water is a key challenge for various applications of coordination chemistry. In this study, a calix[6]arene macrocycle functionalized with three imidazole units on the narrow rim and three primary amino legs on the wide rim was synthesized and studied. This ligand coordinates a Zn
2+ cation in water, within a pH window centered around 7, through the three imidazole units and one self-included amino leg occupying the coordination site within the macrocycle cavity. The coordination process benefits from a favourable entropic effect, conferring greater thermodynamic stability to the resulting ouroboros-like complex compared to the one stabilized by an exogenous amine. Additionally, the intramolecular coordination ensures a supramolecular protection, which can be exploited for the site-selective functionalization of two out of the three amino groups. These findings demonstrate that the use of macrocyclic ligands capable of forming ouroboros-like molecular complexes represents a valuable strategy for stabilizing metal ions in water.- Published
- 2024
- Full Text
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12. Development of a Cone Homooxacalix[3]arene-Based Fluorescent Chemosensor for the Selective Detection of Biogenic Ammonium Ions in Protic Solvents.
- Author
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Lambert S, Carpentier R, Lepeintre M, Testa C, Pappalardo A, Bartik K, and Jabin I
- Abstract
We report here on the development of a fluorescent cone homooxacalix[3]arene-based receptor with a pyrene unit on the wide rim of the macrocycle ( Ox3F ) for the selective detection of primary ammonium ions, including those of biological importance. Ox3F was synthesized efficiently via an innovative strategy that enables the regio- and iteroselective wide rim functionalization of the readily available p - t Bu-substituted homooxacalix[3]arene precursor. Nuclear magnetic resonance studies and in silico methods highlighted the endo -complexation of primary ammonium ions, including the protonated form of biogenic dopamine, tryptamine, serotonin, mexamine, and 3-iodothyronamine. The binding mode is similar for all guests with the ion deeply inserted into the polyaromatic cavity, enabling the NH
3 + head to establish three hydrogen bonds with the ethereal oxygens of the macrocycle. Fluorescence quenching of the pyrene unit was observed following the π-π interaction between the pyrene moiety and the aromatic groups of serotonin, mexamine, and 3-iodothyronamine. No quenching was observed upon complexation of the smaller aromatic neurotransmitter dopamine as well as aliphatic amines and polyamines. This study presents a novel approach for biologically relevant ammonium ion chemosensing with ongoing efforts focused on translating these systems for aqueous environment applications.- Published
- 2024
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13. A Semiflexible Tetrahydrazone Macrocycle for Binding of Pyrophosphate and Smaller Anions.
- Author
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Halgreen L, Torres-Huerta A, Norvaisa K, De Leener G, Tumanov N, Wouters J, Bartik K, and Valkenier H
- Abstract
Macrocyclization has proven to be a useful design strategy in the development of efficient anion receptors. In addition to the ring size, the overall preorganization due to structural rigidity is key. To explore this in the context of developing an efficient pyrophosphate receptor, three macrocycles featuring a 26-membered interior ring size and similar H-bonding motifs have been synthesized, and their anion binding ability has been investigated. Computational studies and nuclear magnetic resonance (NMR) data showed different degrees of preorganization as a result of differences in flexibility. The interaction of the three macrocycles with chloride, dihydrogen phosphate, and dihydrogen pyrophosphate was investigated in solution by NMR and ultraviolet-visible spectroscopy and in the solid state by X-ray crystallography. The tetrahydrazone-based macrocycle featuring intermediate flexibility exhibited the best affinity for all three anions investigated. Our results suggest that in addition to the proper preorganization of binding groups in a macrocycle a certain degree of flexibility is also required for an optimal affinity with the target guest.
- Published
- 2024
- Full Text
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14. Transmembrane Transport of Inorganic Phosphate by a Strapped Calix[4]pyrrole.
- Author
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Cataldo A, Norvaisa K, Halgreen L, Bodman SE, Bartik K, Butler SJ, and Valkenier H
- Abstract
Synthetic anion receptors are increasingly being explored for the transport of anions across lipid membranes because of their potential therapeutic applications. A considerable amount of research focuses on the transport of chloride, whereas the transmembrane transport of inorganic phosphate has not been reported to date, despite the biological relevance of this anion. Here we present a calix[4]pyrrole with a bisurea strap that functions as a receptor and transporter for H
2 PO4 - , relying on the formation of eight hydrogen bonds and efficient encapsulation of the anion. Using a phosphate-sensitive lanthanide probe and31 P NMR spectroscopy, we demonstrate that this receptor can transport phosphate into vesicles by H2 PO4 - /Cl- antiport, H2 PO4 - uniport, and Cs+ /H2 PO4 - symport mechanisms. This first example of inorganic phosphate transport by a neutral receptor opens perspectives for the future development of transporters for various biological phosphates.- Published
- 2023
- Full Text
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15. Specific Binding of Primary Ammoniums in Aqueous Media by Homooxacalixarenes Incorporated into Micelles.
- Author
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Carpentier R, Lambert S, Brunetti E, Jabin I, and Bartik K
- Subjects
- Micelles, Salts, Solvents chemistry, Water chemistry, Ammonium Compounds, Receptors, Artificial
- Abstract
The development of artificial receptors for efficient recognition of analytes in water is a challenging task. Homooxacalix[3]arene-based receptor 1 , which is selective toward primary ammoniums in organic solvents, was transferred into water following two different strategies: direct solubilization and micellar incorporation. Extensive
1 H NMR studies showed that recognition of ammoniums is only observed in the case of micellar incorporation, highlighting the beneficial effect of the microenvironment of the micellar core. The selectivity of the system for primary ammoniums over secondary and tertiary ones was also maintained. The hydrophobic effect plays an important role in the recognition properties, which are counterion-dependent due to the energy penalty for the dissociation of certain ammonium salts in the apolar micellar core. This study shows that the straightforward self-assembly process used for the encapsulation of artificial receptors in micelles is an efficient strategy for developing water-soluble nanosized supramolecular recognition systems.- Published
- 2022
- Full Text
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16. Calix[6]arenes with halogen bond donor groups as selective and efficient anion transporters.
- Author
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Singh A, Torres-Huerta A, Vanderlinden T, Renier N, Martínez-Crespo L, Tumanov N, Wouters J, Bartik K, Jabin I, and Valkenier H
- Subjects
- Anions chemistry, Chlorides, Hydrogen Bonding, Ion Transport, Calixarenes chemistry, Halogens chemistry
- Abstract
Here we present the anion binding and anion transport properties of a series of calix[6]arenes decorated on their small rim with either halogen bond or hydrogen bond donating groups. We show that the halogen bond donating iodotriazole groups enable highly selective transport of chloride and nitrate anions, without transport of protons or hydroxide, at rates similar to those observed with thiourea or squaramide groups.
- Published
- 2022
- Full Text
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17. A Water Molecule Triggers Guest Exchange at a Mono-Zinc Centre Confined in a Biomimetic Calixarene Pocket: a Model for Understanding Ligand Stability in Zn Proteins.
- Author
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Brunetti E, Marcelis L, Zhurkin FE, Luhmer M, Jabin I, Reinaud O, and Bartik K
- Subjects
- Biomimetics, Ligands, Water, Zinc, Calixarenes
- Abstract
In this study, the ligand exchange mechanism at a biomimetic Zn
II centre, embedded in a pocket mimicking the possible constrains induced by a proteic structure, is explored. The residence time of different guest ligands (dimethylformamide, acetonitrile and ethanol) inside the cavity of a calix[6]arene-based tris(imidazole) tetrahedral zinc complex was probed using 1D EXchange SpectroscopY NMR experiments. A strong dependence of residence time on water content was observed with no exchange occurring under anhydrous conditions, even in the presence of a large excess of guest ligand. These results advocate for an associative exchange mechanism involving the transient exo-coordination of a water molecule, giving rise to 5-coordinate ZnII intermediates, and inversion of the pyramid at the ZnII centre. Theoretical modelling by DFT confirmed that the associative mechanism is at stake. These results are particularly relevant in the context of the understanding of kinetic stability/lability in Zn proteins and highlight the key role that a single water molecule can play in catalysing ligand exchange and controlling the lability of ZnII in proteins., (© 2021 Wiley-VCH GmbH.)- Published
- 2021
- Full Text
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18. Specific Binding of Primary Ammonium Ions and Lysine-Containing Peptides in Protic Solvents by Hexahomotrioxacalix[3]arenes.
- Author
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Lambert S, Bartik K, and Jabin I
- Abstract
The binding of ammonium ions by two homooxacalix[3]arene-based receptors was studied using NMR spectroscopy and in silico methods. Both receptors are shown to endocomplex, even in a protic environment, a large variety of primary ammonium ions, including biomolecules. The binding mode is similar for all guests with the ammonium ion deeply inserted into the polyaromatic cavity and its NH
3 + head nearly in the plane defined by the three oxygen atoms of the 18-crown-3 moiety, thus enabling it to establish three H-bonds with the ethereal macrocycle. The remarkable electronic, size, and shape complementarity between primary ammonium ions and the two cavity-based receptors leads to an unprecedented specificity for primary ammonium ions over secondary, tertiary, and quaternary ones. These binding properties were exploited for the selective liquid-liquid extraction of primary ammonium salts from water and for the selective recognition of lysine-containing peptides, opening new perspectives in the field of peptide sensing.- Published
- 2020
- Full Text
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19. Repositioning Chloride Transmembrane Transporters: Transport of Organic Ion Pairs.
- Author
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Grauwels G, Valkenier H, Davis AP, Jabin I, and Bartik K
- Abstract
Given the biological importance of organic cations, the facilitated transport of organic ion pairs could find many applications. Calix[6]arene tris(thio)ureas, which possess a cavity that can accommodate primary ammonium ions, can not only act as carriers for Cl
- /NO3 - antiport but can also perform the cotransport of PrNH3 Cl. Transport was monitored by fluorescence spectroscopy and the presence of the different species inside the vesicles was characterized by1 H and35 Cl NMR experiments involving shift reagents. The cotransport of PrNH3 Cl was also observed by receptors deprived of a cavity, but the presence of the cavity conveys an advantage, as the cotransport by calix[6]arenes was observed to be more efficient than the Cl- /NO3 - antiport, which is not the case with receptors without a cavity. The role played by the cavity was further highlighted by the disappearance of this advantage when using a bulky ammonium ion, which cannot be complexed within the cavity., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2019
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20. Submerging a Biomimetic Metallo-Receptor in Water for Molecular Recognition: Micellar Incorporation or Water Solubilization? A Case Study.
- Author
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Collin S, Parrot A, Marcelis L, Brunetti E, Jabin I, Bruylants G, Bartik K, and Reinaud O
- Abstract
Molecular recognition in water is an important topic, but a challenging task due to the very competitive nature of the medium. The focus of this study is the comparison of two different strategies for the water solubilization of a biomimetic metallo-receptor based on a poly(imidazole) resorcinarene core. The first relies on a new synthetic path for the introduction of hydrophilic substituents on the receptor, at a remote distance from the coordination site. The second involves the incorporation of the organosoluble metallo-receptor into dodecylphosphocholine (DPC) micelles, which mimic the proteic surrounding of the active site of metallo-enzymes. The resorcinarene ligand can be transferred into water through both strategies, in which it binds Zn
II over a wide pH window. Quite surprisingly, very similar metal ion affinities, pH responses, and recognition properties were observed with both strategies. The systems behave as remarkable receptors for small organic anions in water at near-physiological pH. These results show that, provided the biomimetic site is well structured and presents a recognition pocket, the micellar environment has very little impact on either metal ion binding or guest hosting. Hence, micellar incorporation represents an easy alternative to difficult synthetic work, even for the binding of charged species (metal cations or anions), which opens new perspectives for molecular recognition in water, whether for sensing, transport, or catalysis., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2018
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21. Effectiveness of a Preoperative Preparation Program on Children's Emotional States and Parental Anxiety.
- Author
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Bartik K and Toruner EK
- Subjects
- Caregivers psychology, Child, Emotions, Female, Humans, Male, Nurse-Patient Relations, Patient Satisfaction, Anxiety epidemiology, Communication, Parents psychology, Preoperative Care methods
- Abstract
Purpose: The study was conducted to examine the effects of a preoperative preparation program on children and their parents in a pediatric surgery outpatient clinic., Design: A quasiexperimental design was used., Methods: Seventy-three children and their primary caregivers were included in the study (intervention = 36, control = 37). Data collection tools included the Characteristics of Children and Caregivers Data Form, the PedsQL Health Care Parental Satisfaction Scale, the State Anxiety Inventory, and the children's Koppitz Human Figure Drawing Test. Data were collected on the day before surgery and the day of surgery. The program comprised verbal and written information about the process that was given to families and children, and a medical play doll was used for therapeutic communication with children in the intervention group., Findings: The satisfaction level of parents in the intervention group was found to be significantly higher than in the control group (intervention = 100, control = 50; P < .05). During the preoperative and discharge periods, the anxiety scores of parents in the intervention group were significantly lower than the control group (P < .05). According to the Koppitz Drawing Test, the children in the control group's emotional state was higher than the intervention group regarding impulsiveness, anxiety, and anger on discharge (P < .05)., Conclusions: The preoperative preparation program was found to have a positive effect on the children and their parents. Nurses should use drawings of children as a therapeutic communication technique to evaluate the emotions of children., (Copyright © 2017 American Society of PeriAnesthesia Nurses. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
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22. A selective calix[6]arene-based fluorescent chemosensor for phosphatidylcholine type lipids.
- Author
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Brunetti E, Moerkerke S, Wouters J, Bartik K, and Jabin I
- Subjects
- Hydrogen Bonding, Hydrophobic and Hydrophilic Interactions, Models, Molecular, Molecular Conformation, Phosphatidylcholines chemistry, Calixarenes chemistry, Chemistry Techniques, Analytical instrumentation, Fluorescent Dyes chemistry, Phenols chemistry, Phosphatidylcholines analysis
- Abstract
The development of chemosensors that can selectively detect phosphatidylcholines (PCs) in biological samples is of medical relevance considering the importance of these phospholipids in cell growth and survival. Their selective sensing over phosphatidylethanolamines (PEs) is however a challenging task. We report here on the chemosensing capacities of calix[6]tris-pyrenylurea 1, which is able to selectively interact with phosphatidylcholine-type lipids in organic media. Host 1 also binds them in a biphasic chloroform/water solution, opening the way to the design of selective chemosensors for these lipids in biological media. The results obtained by NMR, fluorescence spectroscopy and modelling studies show that the selectivity is the result of the high degree of complementarity between the lipids' zwitterionic phosphatidylcholine headgroup and the receptor's H-bonding donor site and hydrophobic pocket. The mode of recognition is reminiscent of natural systems, such as human phosphatidylcholine transfer proteins (PC-TPs), validating the biomimetic approach adopted in our work.
- Published
- 2016
- Full Text
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23. A comprehensive study to protein retention in hydrophobic interaction chromatography.
- Author
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Baca M, De Vos J, Bruylants G, Bartik K, Liu X, Cook K, and Eeltink S
- Subjects
- Animals, Cattle, Hydrophobic and Hydrophilic Interactions, Protein Conformation, Proteins isolation & purification, Surface Tension, Chromatography, High Pressure Liquid methods, Proteins chemistry, Salts chemistry
- Abstract
The effect of different kosmotropic/chaotropic salt systems on retention characteristics of intact proteins has been examined in hydrophobic interaction chromatography (HIC). The performance was assessed using different column chemistries, i.e., polyalkylamide, alkylamine incorporating hydrophobic moieties, and a butyl chemistry. Selectivity in HIC is mainly governed by the salt concentration and by the molal surface tension increment of the salt. Typically, a linear relationship between the natural logarithm of the retention factor and the salt concentration is obtained. Using a 250mm long column packed with 5μm polyalkylamide functionalized silica particles and applying a 30min linear salt gradient, a peak capacity of 78 was achieved, allowing the baseline separation of seven intact proteins. The hydrophobicity index appeared to be a good indicator to predict the elution order of intact proteins in HIC mode. Furthermore, the effect of adding additives in the mobile phase, such as calcium chloride (stabilizing the 3D conformation of α-lactalbumin) and isopropanol, on retention properties has been assessed. Results indicate that HIC retention is also governed by conformational in the proteins which affect the number of accessible hydrophobic moieties., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
- Full Text
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24. Amino acid induced fractal aggregation of gold nanoparticles: Why and how.
- Author
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Doyen M, Goole J, Bartik K, and Bruylants G
- Subjects
- Colloids chemistry, Particle Size, Surface Properties, Amino Acids chemistry, Fractals, Gold chemistry, Metal Nanoparticles chemistry
- Abstract
Gold colloids are the object of many studies as they are reported to have potential biological sensing, imaging and drug delivery applications. In the presence of certain amino acids the aggregation of the gold nanoparticles into linear structures is observed, as highlighted by the appearance of a second plasmon band in the UV-Vis spectra of the colloid. The mechanism behind this phenomenon is still under debate. In order to help elucidate this issue, the interaction between gold colloids and different amino acids, modified amino acids and molecules mimicking their side-chain was monitored by UV-Vis absorption, DLS and TEM. The results show that phenomenon can be rationalized in terms of the Diffusion Limited Colloid Aggregation (DLCA) model which gives rise to the fractal aggregation colloids. The global charge of the compound, which influences the ionic strength of the solution, and the ease with which the compound can interact with the GNPs and affect their surface potential, are, the two parameters which control the DLCA regime. Calculations based on the Derjaguin, Landau, Verwey and Overbeek (DLVO) theory confirm all the experimental observations., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
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25. Primary amine recognition in water by a calix[6]aza-cryptand incorporated in dodecylphosphocholine micelles.
- Author
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Brunetti E, Inthasot A, Keymeulen F, Reinaud O, Jabin I, and Bartik K
- Subjects
- Hydrogen-Ion Concentration, Hydrophobic and Hydrophilic Interactions, Ligands, Magnetic Resonance Spectroscopy, Metals chemistry, Molecular Conformation, Phosphorylcholine chemistry, Protein Binding, Protons, Spectrometry, Mass, Electrospray Ionization, Zinc chemistry, Amines chemistry, Calixarenes chemistry, Ethers, Cyclic chemistry, Micelles, Phosphorylcholine analogs & derivatives, Schiff Bases chemistry, Water chemistry
- Abstract
Water is a unique solvent and the design of selective artificial hosts that can efficiently work in an aqueous medium is a challenging task. It is known that the calix[6]tren zinc complex can recognize neutral guests in organic solvents. This complex was incorporated into dodecylphosphocholine micelles (DPC) and studied by NMR. The incorporated complex is able to extract selectively primary amines from the aqueous environment driven by an important hydrophobic effect which also affects the selectivity of the complex for these amines. This work shows how the incorporation of organo-soluble receptors in micelles can be an elegant and very efficient strategy to obtain water compatible nanosized supramolecular recognition devices which can be prepared via a straightforward self-assembly process.
- Published
- 2015
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26. Fluoride binding in water with the use of micellar nanodevices based on salophen complexes.
- Author
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Keymeulen F, De Bernardin P, Giannicchi I, Galantini L, Bartik K, and Dalla Cort A
- Subjects
- Binding Sites, Micelles, Molecular Structure, Fluorides chemistry, Nanotechnology, Salicylates chemistry, Water chemistry
- Abstract
The use of micelles to transpose lipophilic receptors, such as uranyl-salophen complexes, into an aqueous environment is a valuable and versatile tool. Receptor 1 incorporated into CTABr micelles forms a supramolecular system that exhibits excellent binding properties towards fluoride in water, despite the competition of the aqueous medium. To fully evaluate the potential of micellar nanodevices, we extended our previous study to other types of surfactants and to a uranyl-salophen receptor with a more extended aromatic surface. Paramagnetic relaxation enhancement experiments were used to obtain information on the location of the two receptors within the micelles and complementary information was obtained from dynamic light scattering experiments. With these data it is possible to account for the key factors necessary to obtain an efficient supramolecular device for anion binding in water.
- Published
- 2015
- Full Text
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27. Fluorescent chemosensors for anions and contact ion pairs with a cavity-based selectivity.
- Author
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Brunetti E, Picron JF, Flidrova K, Bruylants G, Bartik K, and Jabin I
- Abstract
The association of a concave macrocyclic compound to one or multiple fluorophores is an appealing strategy for the design of chemosensors. Indeed, as with biological systems, a cavity-based selectivity can be expected with such fluorescent receptors. Examples of calix[6]arene-based systems using this strategy are rare in the literature, and to our knowledge, no examples of fluorescent receptors that can bind organic contact ion pairs have been reported. This report describes the straightforward synthesis of fluorescent calix[6]arene-based receptors 4a and 4b bearing three pyrenyl subunits and the study of their binding properties toward anions and ammonium salts using different spectroscopies. It was found that receptor 4a exhibits a remarkable selectivity for the sulfate anion in DMSO, enabling its selective sensing by fluorescence spectroscopy. In CDCl3, the receptor is able to bind ammonium ions efficiently only in association with the sulfate anion. Interestingly, this cooperative binding of ammonium sulfate salts was also evidenced in a protic environment. Finally, a cavity-based selectivity in terms of size and shape of the guest was observed with both receptors 4a and 4b, opening interesting perspectives on the elaboration of fluorescent cavity-based systems for the selective sensing of biologically relevant ammonium salts such as neurotransmitters.
- Published
- 2014
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28. Paramagnetic relaxation enhancement experiments: a valuable tool for the characterization of micellar nanodevices.
- Author
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Keymeulen F, De Bernardin P, Dalla Cort A, and Bartik K
- Abstract
Micellar incorporation of hydrophobic molecular receptors is a promising strategy to obtain efficient nanodevices that work in water. In order to fully evaluate the potential of this approach, information on the localization and orientation of the receptor inside the micelle are necessary. Systematic studies undertaken on a uranyl-salophen receptor incorporated into CTABr and CTACl micelles show that nuclear magnetic resonance paramagnetic relaxation enhancement (NMR-PRE) experiments are particularly suitable to provide this type of information. The effect on the measurements of surfactant concentration, nature of the surfactant polar head, and ionic strength is also reported. Notably the normalization procedure applied to the obtained data can be considered of general application, thus enabling the comparison of information collected for different types of supramolecular micelle/receptor systems.
- Published
- 2013
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29. UV-Vis and NMR study of the formation of gold nanoparticles by citrate reduction: observation of gold-citrate aggregates.
- Author
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Doyen M, Bartik K, and Bruylants G
- Subjects
- Magnetic Resonance Spectroscopy, Oxidation-Reduction, Spectrophotometry, Ultraviolet, Citric Acid chemistry, Gold chemistry, Metal Nanoparticles chemistry
- Abstract
The citrate reduction of gold(III) in water is one of the most commonly used synthetic pathways for the preparation of gold colloids. In order to gain insight into the formation of gold nanoparticles (GNPs) using this method, the synthesis of GNPs was undertaken under different experimental conditions and monitored in operando by UV-Vis spectroscopy. These experiments highlight that citrate should be polydeprotonated and that Au(III) should not be polyhydroxylated in order to obtain GNPs with a narrow size distribution. Samples taken during the reaction were also characterized by Nuclear Magnetic Resonance Spectroscopy (NMR) to monitor the various reaction products as a function of time. Diffusion Ordered SpectroscopY (DOSY) experiments allowed us to identify slow diffusing citrate - Au(I) or Au(0) complexes which could play a role in the formation of GNPs., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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30. Polyoxometalates as a novel class of artificial proteases: selective hydrolysis of lysozyme under physiological pH and temperature promoted by a cerium(IV) Keggin-type polyoxometalate.
- Author
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Stroobants K, Moelants E, Ly HG, Proost P, Bartik K, and Parac-Vogt TN
- Subjects
- Circular Dichroism, Hydrogen-Ion Concentration, Hydrolysis, Magnetic Resonance Spectroscopy, Muramidase, Protein Folding, Temperature, Cerium chemistry, Dipeptides chemistry, Lactalbumin chemistry, Peptide Hydrolases chemistry, Peptides chemistry, Tungsten Compounds chemistry
- Abstract
Hen-egg-white lysozyme (HEWL) is specifically cleaved at the Trp28-Val29 and Asn44-Arg45 peptide bonds in the presence of a Keggin-type [Ce(α-PW(11)O(39))(2)](10-) polyoxometalate (POM; 1) at pH 7.4 and 37 °C. The reactivity of 1 towards a range of dipeptides was also examined and the calculated reaction rates were comparable to those observed for the hydrolysis of HEWL. Experiments with α-lactalbumin (α-LA), a protein that is structurally highly homologous to HEWL but has a different surface potential, showed no evidence of hydrolysis, which indicates the importance of electrostatic interactions between 1 and the protein surface for the hydrolytic reaction to occur. A combination of spectroscopic techniques was used to reveal the molecular interactions between HEWL and 1 that lead to hydrolysis. NMR spectroscopy titration experiments showed that on protein addition the intensity of the (31)P NMR signal of 1 gradually decreased due to the formation of a large protein/polyoxometalate complex and completely disappeared when the HEWL/1 ratio reached 1:2. Circular dichroism (CD) measurements of HEWL indicate that addition of 1 results in a clear decrease in the signal at λ=208 nm, which is attributed to changes in the α-helical content of the protein. (15)N-(1)H heteronuclear single quantum coherence (HSQC) NMR measurements of HEWL in the presence of 1 reveal that the interaction is mainly observed for residues that are located in close proximity to the first site in the α-helical part of the structure (Trp28-Val29). The less pronounced NMR spectroscopic shifts around the second cleavage site (Asn44-Arg45), which is found in the β-strand region of the protein, might be caused by weaker metal-directed binding, compared with strong POM-directed binding at the first site., (Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2013
- Full Text
- View/download PDF
31. The search for a deterministic origin for the presence of nonracemic amino-acids in meteorites: a computational approach.
- Author
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Vandenbussche S, Reisse J, Bartik K, and Lievin J
- Subjects
- Circular Dichroism, Molecular Conformation, Stereoisomerism, Amino Acids chemistry, Meteoroids
- Abstract
Amino-acid enantiomeric excesses (ee's) have been detected in different types of carbonaceous chondrites, all in favor of the L enantiomer. In this article, we discuss possible deterministic causes to the presence of these amino-acid ee's in meteorites and evaluate in particular enantioselective photolysis by circularly polarized light (CPL). The electronic circular dichroism spectra of a set of amino- and hydroxy-acids, all detected in chondritic matter but some with ee's and others without ee's, were calculated and compared. The spectra were calculated for the most stable conformation(s) of the considered molecules using quantum mechanical methods (density functional theory). Our results suggest that CPL photolysis in the gas phase was perhaps not at the origin of the presence of ee's in meteorites and that the search for another, but still unknown, deterministic cause must be seriously undertaken., (Copyright © 2011 Wiley-Liss, Inc.)
- Published
- 2011
- Full Text
- View/download PDF
32. Is it useful to have a clear-cut definition of life? On the use of fuzzy logic in prebiotic chemistry.
- Author
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Bruylants G, Bartik K, and Reisse J
- Subjects
- Biological Evolution, Origin of Life, Fuzzy Logic, Life
- Abstract
Many scientists, including one of the authors of the present paper, have devoted time to try to find a definition for life (Bersini and Reisse 2007). It is clear that a consensus will never be reached but, more importantly, it seems that the issue itself could be without major interest. It is indeed impossible to define a "natural" frontier between non-living and living systems and therefore also impossible to define dichotomic criteria which could be used in order to classify systems in one of these two classes (living or non-living). Fuzzy logic provides a natural way to deal with problems where class membership lacks sharply defined criteria. It also offers the possibility to avoid losing time with unnecessary controversies such as deciding whether a virus is, or is not, a living system.
- Published
- 2010
- Full Text
- View/download PDF
33. Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.
- Author
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Bruylants G, Boccongelli M, Snoussi K, and Bartik K
- Subjects
- Base Pairing, Models, Chemical, Molecular Structure, Nucleic Acid Hybridization, Circular Dichroism methods, DNA chemistry, Nucleic Acid Conformation, Nucleic Acid Heteroduplexes chemistry, Oligonucleotides chemistry, Thermodynamics
- Abstract
Locked nucleic acids (LNA), conformationally restricted nucleotide analogues, are known to enhance pairing stability and selectivity toward complementary strands. With the aim to contribute to a better understanding of the origin of these effects, the structure, thermal stability, hybridization thermodynamics, and base-pair dynamics of a full-LNA:DNA heteroduplex and of its isosequential DNA:DNA homoduplex were monitored and compared. CD measurements highlight differences in the duplex structures: the homoduplex and heteroduplex present B-type and A-type helical conformations, respectively. The pairing of the hybrid duplex is characterized, at all temperatures monitored (between 15 and 37 degrees C), by a larger stability constant but a less favorable enthalpic term. A major contribution to this thermodynamic profile emanates from the presence of a hairpin structure in the LNA single strand which contributes favorably to the entropy of interaction but leads to an enthalpy penalty upon duplex formation. The base-pair opening dynamics of both systems was monitored by NMR spectroscopy via imino protons exchange measurements. The measurements highlight that hybrid G-C base-pairs present a longer base-pair lifetime and higher stability than natural G-C base-pairs, but that an LNA substitution in an A-T base-pair does not have a favorable effect on the stability. The thermodynamic and dynamic data confirm a more favorable stacking of the bases in the hybrid duplex. This study emphasizes the complementarities between dynamic and thermodynamical studies for the elucidation of the relevant factors in binding events.
- Published
- 2009
- Full Text
- View/download PDF
34. Probing polymer colloids by 129Xe NMR.
- Author
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Locci E, Roose P, Bartik K, and Luhmer M
- Abstract
Model aqueous dispersions of polystyrene, poly(methyl methacrylate), poly(n-butyl acrylate) and a statistical copolymer poly(n-butyl acrylate-co-methyl methacrylate) were studied using xenon NMR spectroscopy. The (129)Xe NMR spectra of these various latexes reveal qualitative and quantitative differences in the number of peaks and in their line widths and chemical shifts. Above the glass transition temperature, exchange between xenon sorbed in the particle core and free xenon outside the particles is fast on the (129)Xe spectral time-scale and a single (129)Xe signal is observed. At temperatures below the glass transition temperature, the exchange between sorbed and free xenon is slow on the (129)Xe spectral time-scale and two (129)Xe NMR signals can be observed. If the signal of sorbed (129)Xe is observed, its chemical shift, line width and integral relative to the integral of free (129)Xe can be used for the characterization of the particle core. The line width of free (129)Xe provides the residence time of xenon outside the particles and can be used to determine the rate constant characterizing the kinetics of penetration of xenon in the particles. This rate constant emerges as promising parameter for the characterization of the polymer particle surface.
- Published
- 2009
- Full Text
- View/download PDF
35. Fluoride binding in water: a new environment for a known receptor.
- Author
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Cametti M, Dalla Cort A, and Bartik K
- Subjects
- Binding Sites, Cetrimonium, Cetrimonium Compounds chemistry, Magnetic Resonance Spectroscopy methods, Magnetic Resonance Spectroscopy standards, Micelles, Molecular Structure, Reference Standards, Salicylates chemistry, Surface-Active Agents chemistry, Uranium Compounds chemistry, Fluorides chemistry, Organometallic Compounds chemistry, Water chemistry
- Published
- 2008
- Full Text
- View/download PDF
36. Aromatic-carbohydrate interactions: an NMR and computational study of model systems.
- Author
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Vandenbussche S, Díaz D, Fernández-Alonso MC, Pan W, Vincent SP, Cuevas G, Cañada FJ, Jiménez-Barbero J, and Bartik K
- Subjects
- Magnetic Resonance Spectroscopy standards, Models, Molecular, Molecular Structure, Reference Standards, Reproducibility of Results, Amino Acids, Aromatic chemistry, Computer Simulation, Glycosides chemistry, Magnetic Resonance Spectroscopy methods, Models, Chemical, Phenols chemistry
- Abstract
The interactions of simple carbohydrates with aromatic moieties have been investigated experimentally by NMR spectroscopy. The analysis of the changes in the chemical shifts of the sugar proton signals induced upon addition of aromatic entities has been interpreted in terms of interaction geometries. Phenol and aromatic amino acids (phenylalanine, tyrosine, tryptophan) have been used. The observed sugar-aromatic interactions depend on the chemical nature of the sugar, and thus on the stereochemistries of the different carbon atoms, and also on the solvent. A preliminary study of the solvation state of a model monosaccharide (methyl beta-galactopyranoside) in aqueous solution, both alone and in the presence of benzene and phenol, has also been carried out by monitoring of intermolecular homonuclear solvent-sugar and aromatic-sugar NOEs. These experimental results have been compared with those obtained by density functional theory methods and molecular mechanics calculations.
- Published
- 2008
- Full Text
- View/download PDF
37. Protonation linked equilibria and apparent affinity constants: the thermodynamic profile of the alpha-chymotrypsin-proflavin interaction.
- Author
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Bruylants G, Wintjens R, Looze Y, Redfield C, and Bartik K
- Subjects
- Binding Sites, Computer Simulation, Enzyme Activation, Protein Binding, Protons, Thermodynamics, Chymotrypsin chemistry, Models, Chemical, Models, Molecular, Proflavine chemistry
- Abstract
Protonation/deprotonation equilibria are frequently linked to binding processes involving proteins. The presence of these thermodynamically linked equilibria affects the observable thermodynamic parameters of the interaction (K(obs), DeltaH(obs)(0) ). In order to try and elucidate the energetic factors that govern these binding processes, a complete thermodynamic characterisation of each intrinsic equilibrium linked to the complexation event is needed and should furthermore be correlated to structural information. We present here a detailed study, using NMR and ITC, of the interaction between alpha-chymotrypsin and one of its competitive inhibitors, proflavin. By performing proflavin titrations of the enzyme, at different pH values, we were able to highlight by NMR the effect of the complexation of the inhibitor on the ionisable residues of the catalytic triad of the enzyme. Using ITC we determined the intrinsic thermodynamic parameters of the different equilibria linked to the binding process. The possible driving forces of the interaction between alpha-chymotrypsin and proflavin are discussed in the light of the experimental data and on the basis of a model of the complex. This study emphasises the complementarities between ITC and NMR for the study of binding processes involving protonation/deprotonation equilibria.
- Published
- 2007
- Full Text
- View/download PDF
38. Developments in the characterisation of the catalytic triad of alpha-chymotrypsin: Effect of the protonation state of Asp102 on the 1H NMR signals of His57.
- Author
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Bruylants G, Redfield C, and Bartik K
- Subjects
- Animals, Biochemistry methods, Catalytic Domain, Cattle, Histidine chemistry, Hydrogen-Ion Concentration, Models, Molecular, Pancreas metabolism, Protein Conformation, Protons, Aspartic Acid chemistry, Chymotrypsin chemistry, Magnetic Resonance Spectroscopy methods
- Published
- 2007
- Full Text
- View/download PDF
39. Novel method for the measurement of xenon gas solubility using 129Xe NMR spectroscopy.
- Author
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Segebarth N, Aïtjeddig L, Locci E, Bartik K, and Luhmer M
- Abstract
A novel method is presented for determining xenon partitioning between a gas phase and a liquid phase. An experimental setup which permits the simultaneous measurement of the 129Xe chemical shift in both the gas and the liquid phases, that is, under the same experimental conditions, has been designed. Xenon solubility is obtained via 129Xe chemical shift measurements in the gas phase. The method was validated against xenon solubility data from the literature; in general, the agreement is found to be within 3%. The solubility of xenon in three solvents for which data have not been previously reported (acetone, acetonitrile, and 1,1,2,2-tetrachloroethane) was determined using this novel method. 129Xe chemical shifts for dissolved xenon are also reported; it is found that xenon-xenon interactions may play a significant role in the liquid phase even at low equilibrium xenon pressures.
- Published
- 2006
- Full Text
- View/download PDF
40. Structural characterization of the papaya cysteine proteinases at low pH.
- Author
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Huet J, Looze Y, Bartik K, Raussens V, Wintjens R, and Boussard P
- Subjects
- Administration, Oral, Anilino Naphthalenesulfonates chemistry, Calorimetry, Differential Scanning, Chymopapain chemistry, Circular Dichroism, Cysteine chemistry, Endopeptidases chemistry, Glycine chemistry, Hot Temperature, Hydrogen-Ion Concentration, Models, Chemical, Plant Proteins chemistry, Protein Conformation, Protein Denaturation, Protein Folding, Spectrometry, Fluorescence, Spectrophotometry, Temperature, Time Factors, Ultraviolet Rays, Carica enzymology, Cysteine Endopeptidases chemistry
- Abstract
Current control of gastrointestinal nematodes relies primarily on the use of synthetic drugs and encounters serious problems of resistance. Oral administration of plant cysteine proteinases, known to be capable of damaging nematode cuticles, has recently been recommended to overcome these problems. This prompted us to examine if plant cysteine proteinases like the four papaya proteinases papain, caricain, chymopapain, and glycine endopeptidase that have been investigated here can survive acidic pH conditions and pepsin degradation. The four papaya proteinases have been found to undergo, at low pH, a conformational transition that instantaneously converts their native forms into molten globules that are quite unstable and rapidly degraded by pepsin. As shown by activity measurements, the denatured state of these proteinases which finally results from acid treatment is completely irreversible. It is concluded that cysteine proteinases from plant origin may require to be protected against both acid denaturation and proteolysis to be effective in the gut after oral administration.
- Published
- 2006
- Full Text
- View/download PDF
41. The potential of the xenon "spin-spy" methodology for the study of configurational equilibria in solution.
- Author
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Locci E, Reisse J, and Bartik K
- Subjects
- Carbohydrate Conformation, Kinetics, Glucose chemistry, Magnetic Resonance Spectroscopy methods
- Published
- 2003
- Full Text
- View/download PDF
42. The potential of 129Xe NMR relaxation measurements for the study of heme proteins.
- Author
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Locci E, Casu M, Saba G, Lai A, Reisse J, and Bartik K
- Subjects
- Animals, Horses, Magnetic Resonance Spectroscopy, Metmyoglobin chemistry, Protein Conformation, Solutions, Hemeproteins chemistry, Xenon Isotopes
- Published
- 2002
- Full Text
- View/download PDF
43. Probing proteins in solution by (129)Xe NMR spectroscopy.
- Author
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Locci E, Dehouck Y, Casu M, Saba G, Lai A, Luhmer M, Reisse J, and Bartik K
- Subjects
- Animals, Chickens, Cytochrome c Group chemistry, Egg White, Horses, Metmyoglobin chemistry, Muramidase chemistry, Solutions, Magnetic Resonance Spectroscopy methods, Proteins chemistry, Xenon Isotopes
- Abstract
The interaction of xenon with different proteins in aqueous solution is investigated by (129)Xe NMR spectroscopy. Chemical shifts are measured in horse metmyoglobin, hen egg white lysozyme, and horse cytochrome c solutions as a function of xenon concentration. In these systems, xenon is in fast exchange between all possible environments. The results suggest that nonspecific interactions exist between xenon and the protein exteriors and the data are analyzed in term of parameters which characterize the protein surfaces. The experimental data for horse metmyoglobin are interpreted using a model in which xenon forms a 1:1 complex with the protein and the chemical shift of the complexed xenon is reported (Locci et al., Keystone Symposia "Frontiers of NMR in Molecular Biology VI", Jan. 9--15, 1999, Breckenridge, CO, Abstract E216, p. 53; Locci et al., XeMAT 2000 "Optical Polarization and Xenon NMR of Materials", June 28--30, 2000, Sestri Levante, Italy, p. 46)., (Copyright 2001 Academic Press.)
- Published
- 2001
- Full Text
- View/download PDF
44. Molecular polarization and molecular chiralization: The first example of a chiralized xenon atom.
- Author
-
Bartik K, Luhmer M, Collet A, and Reisse J
- Abstract
In this article we focus on the interaction between a chiral molecule and a single achiral molecule or an ensemble of achiral molecules. The desymmetrization of the achiral molecules resulting from this interaction is described as "chiralization." By analogy with electric polarization, we factorize chiralization into three factors, i.e., orientation, atomic, and electronic terms. Chiralization depends on the dipolar polarizability of the chiralized molecule but also on polarizabilities of higher order. The experimental part of this work is devoted to the electronic chiralization of a xenon atom and its observation by (129)Xe NMR spectroscopy. Copyright 2000 Wiley-Liss, Inc.
- Published
- 2001
- Full Text
- View/download PDF
45. Can monoatomic xenon become chiral?
- Author
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Bartik K, El Haouaj M, Luhmer M, Collet A, and Reisse J
- Subjects
- Magnetic Resonance Spectroscopy, Polycyclic Compounds chemistry, Stereoisomerism, Xenon Isotopes chemistry, Xenon chemistry
- Abstract
A chiral host, cryptophane-A (1), makes even a monoatomic noble gas chiral. The interaction of xenon and 1 was monitored by (129) Xe NMR and in the presence of a chiral chemical shift reagent., (© 2000 WILEY-VCH Verlag GmbH, Weinheim, Fed. Rep. of Germany.)
- Published
- 2000
- Full Text
- View/download PDF
46. Study by (23)Na-NMR, (1)H-NMR, and ultraviolet spectroscopy of the thermal stability of an 11-basepair oligonucleotide.
- Author
-
Cahen P, Luhmer M, Fontaine C, Morat C, Reisse J, and Bartik K
- Subjects
- Base Pairing, Nucleic Acid Conformation, Protons, Temperature, DNA chemistry, Magnetic Resonance Spectroscopy, Nucleic Acid Denaturation, Oligonucleotides chemistry, Spectrophotometry, Ultraviolet
- Abstract
23Na-NMR, (1)H-NMR, and ultraviolet (UV) spectroscopy have been used to study the thermal stability of the double helix structure of an 11-basepair oligonucleotide. The denaturation curves obtained by (23)Na-NMR and UV are analyzed using a two-state model. The melting temperature and DeltaH(0) obtained are identical within experimental error, suggesting that modifications in the ionic atmosphere, probed by (23)Na-NMR, and the modifications in the basepair stacking, probed by UV, occur at the same temperature. Additional dynamical information on the denaturation process has been obtained by (1)H-NMR: slow exchange is observed between the thymine methyl resonances, and the disappearance of imino protons shows that a single basepair opening does not contribute significantly to proton exchange.
- Published
- 2000
- Full Text
- View/download PDF
47. 1H-NMR analysis of turkey egg-white lysozyme and comparison with hen egg-white lysozyme.
- Author
-
Bartik K, Dobson CM, and Redfield C
- Subjects
- Amino Acid Sequence, Animals, Chickens, Egg White, Molecular Sequence Data, Turkey, X-Ray Diffraction, Magnetic Resonance Spectroscopy, Muramidase chemistry
- Abstract
The complete main chain and approximately 75% of the side chain 1H-NMR assignments of the 129-residue protein, turkey egg-white lysozyme, are presented. NOE data, hydrogen-exchange rates, chemical shifts and coupling constants are reported and are indicative of a structure in solution that is essentially identical to that of the homologous hen egg-white lysozyme. The NH-alpha CH coupling constants of turkey lysozyme are compared to torsion-angle data from three crystal structures of the protein and the results are interpreted in terms of crystal-structure resolution and refinement.
- Published
- 1993
- Full Text
- View/download PDF
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