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3. Ancient Plasmodium genomes shed light on the history of human malaria

Author

Michel, Megan, Skourtanioti, Eirini, Pierini, Federica, Guevara, Evelyn K., Mötsch, Angela, Kocher, Arthur, Barquera, Rodrigo, Bianco, Raffaela A., Carlhoff, Selina, Coppola Bove, Lorenza, Freilich, Suzanne, Giffin, Karen, Hermes, Taylor, Hiß, Alina, Knolle, Florian, Nelson, Elizabeth A., Neumann, Gunnar U., Papac, Luka, Penske, Sandra, Rohrlach, Adam B., Salem, Nada, Semerau, Lena, Villalba-Mouco, Vanessa, Abadie, Isabelle, Aldenderfer, Mark, Beckett, Jessica F., Brown, Matthew, Campus, Franco G. R., Chenghwa, Tsang, Cruz Berrocal, María, Damašek, Ladislav, Duffett Carlson, Kellie Sara, Durand, Raphaël, Ernée, Michal, Fântăneanu, Cristinel, Frenzel, Hannah, García Atiénzar, Gabriel, Guillén, Sonia, Hsieh, Ellen, Karwowski, Maciej, Kelvin, David, Kelvin, Nikki, Khokhlov, Alexander, Kinaston, Rebecca L., Korolev, Arkadii, Krettek, Kim-Louise, Küßner, Mario, Lai, Luca, Look, Cory, Majander, Kerttu, Mandl, Kirsten, Mazzarello, Vittorio, McCormick, Michael, de Miguel Ibáñez, Patxuka, Murphy, Reg, Németh, Rita E., Nordqvist, Kerkko, Novotny, Friederike, Obenaus, Martin, Olmo-Enciso, Lauro, Onkamo, Päivi, Orschiedt, Jörg, Patrushev, Valerii, Peltola, Sanni, Romero, Alejandro, Rubino, Salvatore, Sajantila, Antti, Salazar-García, Domingo C., Serrano, Elena, Shaydullaev, Shapulat, Sias, Emanuela, Šlaus, Mario, Stančo, Ladislav, Swanston, Treena, Teschler-Nicola, Maria, Valentin, Frederique, Van de Vijver, Katrien, Varney, Tamara L., Vigil-Escalera Guirado, Alfonso, Waters, Christopher K., Weiss-Krejci, Estella, Winter, Eduard, Lamnidis, Thiseas C., Prüfer, Kay, Nägele, Kathrin, Spyrou, Maria, Schiffels, Stephan, Stockhammer, Philipp W., Haak, Wolfgang, Posth, Cosimo, Warinner, Christina, Bos, Kirsten I., Herbig, Alexander, and Krause, Johannes

Published
2024
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4. Ancient genomes reveal insights into ritual life at Chichén Itzá

Author

Barquera, Rodrigo, Del Castillo-Chávez, Oana, Nägele, Kathrin, Pérez-Ramallo, Patxi, Hernández-Zaragoza, Diana Iraíz, Szolek, András, Rohrlach, Adam Benjamin, Librado, Pablo, Childebayeva, Ainash, Bianco, Raffaela Angelina, Penman, Bridget S., Acuña-Alonzo, Victor, Lucas, Mary, Lara-Riegos, Julio César, Moo-Mezeta, María Ermila, Torres-Romero, Julio César, Roberts, Patrick, Kohlbacher, Oliver, Warinner, Christina, and Krause, Johannes

Published
2024
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5. Insights into the genetic histories and lifeways of Machu Picchu’s occupants

Author

Salazar, Lucy, Burger, Richard, Forst, Janine, Barquera, Rodrigo, Nesbitt, Jason, Calero, Jorge, Washburn, Eden, Verano, John, Zhu, Kimberly, Sop, Korey, Kassadjikova, Kalina, Ibarra Asencios, Bebel, Davidson, Roberta, Bradley, Brenda, Krause, Johannes, and Fehren-Schmitz, Lars

Subjects
History, Heritage and Archaeology, Biological Sciences, Historical Studies, Genetics, Human Genome
Abstract

Machu Picchu originally functioned as a palace within the estate of the Inca emperor Pachacuti between ~1420 and 1532 CE. Before this study, little was known about the people who lived and died there, where they came from or how they were related to the inhabitants of the Inca capital of Cusco. We generated genome-wide data for 34 individuals buried at Machu Picchu who are believed to have been retainers or attendants assigned to serve the Inca royal family, as well as 34 individuals from Cusco for comparative purposes. When the ancient DNA results are contextualized using historical and archaeological data, we conclude that the retainer population at Machu Picchu was highly heterogeneous with individuals exhibiting genetic ancestries associated with groups from throughout the Inca Empire and Amazonia. The results suggest a diverse retainer community at Machu Picchu in which people of different genetic backgrounds lived, reproduced, and were interred together.

Published
2023

6. Selection scan in Native Americans of Mexico identifies FADS2 rs174616: Evidence of gene-diet interactions affecting lipid levels and Delta-6-desaturase activity

Author

Romero-Hidalgo, Sandra, Sagaceta-Mejía, Janine, Villalobos-Comparán, Marisela, Tejero, María Elizabeth, Domínguez-Pérez, Mayra, Jacobo-Albavera, Leonor, Posadas-Sánchez, Rosalinda, Vargas-Alarcón, Gilberto, Posadas-Romero, Carlos, Macías-Kauffer, Luis, Vadillo-Ortega, Felipe, Contreras-Sieck, Miguel Angel, Acuña-Alonzo, Víctor, Barquera, Rodrigo, Macín, Gastón, Binia, Aristea, Guevara-Chávez, Jose Guadalupe, Sebastián-Medina, Leticia, Menjívar, Martha, Canizales-Quinteros, Samuel, Carnevale, Alessandra, and Villarreal-Molina, Teresa

Published
2024
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7. Extensive pedigrees reveal the social organization of a Neolithic community

Author

Rivollat, Maïté, Rohrlach, Adam Benjamin, Ringbauer, Harald, Childebayeva, Ainash, Mendisco, Fanny, Barquera, Rodrigo, Szolek, András, Le Roy, Mélie, Colleran, Heidi, Tuke, Jonathan, Aron, Franziska, Pemonge, Marie-Hélène, Späth, Ellen, Télouk, Philippe, Rey, Léonie, Goude, Gwenaëlle, Balter, Vincent, Krause, Johannes, Rottier, Stéphane, Deguilloux, Marie-France, and Haak, Wolfgang

Published
2023
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8. Neanderthal introgression in SCN9A impacts mechanical pain sensitivity

Author

Faux, Pierre, Ding, Li, Ramirez-Aristeguieta, Luis Miguel, Chacón-Duque, J. Camilo, Comini, Maddalena, Mendoza-Revilla, Javier, Fuentes-Guajardo, Macarena, Jaramillo, Claudia, Arias, William, Hurtado, Malena, Villegas, Valeria, Granja, Vanessa, Barquera, Rodrigo, Everardo-Martínez, Paola, Quinto-Sánchez, Mirsha, Gómez-Valdés, Jorge, Villamil-Ramírez, Hugo, Silva de Cerqueira, Caio C., Hünemeier, Tábita, Ramallo, Virginia, Gonzalez-José, Rolando, Schüler-Faccini, Lavinia, Bortolini, Maria-Cátira, Acuña-Alonzo, Victor, Canizales-Quinteros, Samuel, Poletti, Giovanni, Gallo, Carla, Rothhammer, Francisco, Rojas, Winston, Schmid, Annina B., Adhikari, Kaustubh, Bennett, David L., and Ruiz-Linares, Andrés

Published
2023
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10. Automatic landmarking identifies new loci associated with face morphology and implicates Neanderthal introgression in human nasal shape

Author

Li, Qing, Chen, Jieyi, Faux, Pierre, Delgado, Miguel Eduardo, Bonfante, Betty, Fuentes-Guajardo, Macarena, Mendoza-Revilla, Javier, Chacón-Duque, J. Camilo, Hurtado, Malena, Villegas, Valeria, Granja, Vanessa, Jaramillo, Claudia, Arias, William, Barquera, Rodrigo, Everardo-Martínez, Paola, Sánchez-Quinto, Mirsha, Gómez-Valdés, Jorge, Villamil-Ramírez, Hugo, Silva de Cerqueira, Caio C., Hünemeier, Tábita, Ramallo, Virginia, Wu, Sijie, Du, Siyuan, Giardina, Andrea, Paria, Soumya Subhra, Khokan, Mahfuzur Rahman, Gonzalez-José, Rolando, Schüler-Faccini, Lavinia, Bortolini, Maria-Cátira, Acuña-Alonzo, Victor, Canizales-Quinteros, Samuel, Gallo, Carla, Poletti, Giovanni, Rojas, Winston, Rothhammer, Francisco, Navarro, Nicolas, Wang, Sijia, Adhikari, Kaustubh, and Ruiz-Linares, Andrés

Published
2023
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11. Genomic analyses of hair from Ludwig van Beethoven

Author

Begg, Tristan James Alexander, Schmidt, Axel, Kocher, Arthur, Larmuseau, Maarten H.D., Runfeldt, Göran, Maier, Paul Andrew, Wilson, John D., Barquera, Rodrigo, Maj, Carlo, Szolek, András, Sager, Michael, Clayton, Stephen, Peltzer, Alexander, Hui, Ruoyun, Ronge, Julia, Reiter, Ella, Freund, Cäcilia, Burri, Marta, Aron, Franziska, Tiliakou, Anthi, Osborn, Joanna, Behar, Doron M., Boecker, Malte, Brandt, Guido, Cleynen, Isabelle, Strassburg, Christian, Prüfer, Kay, Kühnert, Denise, Meredith, William Rhea, Nöthen, Markus M., Attenborough, Robert David, Kivisild, Toomas, and Krause, Johannes

Published
2023
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12. The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast.

Author

Barbieri, Chiara, Barquera, Rodrigo, Arias, Leonardo, Sandoval, José R, Acosta, Oscar, Zurita, Camilo, Aguilar-Campos, Abraham, Tito-Álvarez, Ana M, Serrano-Osuna, Ricardo, Gray, Russell D, Mafessoni, Fabrizio, Heggarty, Paul, Shimizu, Kentaro K, Fujita, Ricardo, Stoneking, Mark, Pugach, Irina, and Fehren-Schmitz, Lars

Subjects
Humans, Language, Genome, Human, History, Ancient, Peru, Phylogeography, Human Migration, Native American population genetics, South American prehistory, admixture, human migration, runs of homozygosity, Genome, Human, History, Ancient, Biochemistry and Cell Biology, Evolutionary Biology, Genetics
Abstract

Studies of Native South American genetic diversity have helped to shed light on the peopling and differentiation of the continent, but available data are sparse for the major ecogeographic domains. These include the Pacific Coast, a potential early migration route; the Andes, home to the most expansive complex societies and to one of the most widely spoken indigenous language families of the continent (Quechua); and Amazonia, with its understudied population structure and rich cultural diversity. Here, we explore the genetic structure of 176 individuals from these three domains, genotyped with the Affymetrix Human Origins array. We infer multiple sources of ancestry within the Native American ancestry component; one with clear predominance on the Coast and in the Andes, and at least two distinct substrates in neighboring Amazonia, including a previously undetected ancestry characteristic of northern Ecuador and Colombia. Amazonian populations are also involved in recent gene-flow with each other and across ecogeographic domains, which does not accord with the traditional view of small, isolated groups. Long-distance genetic connections between speakers of the same language family suggest that indigenous languages here were spread not by cultural contact alone. Finally, Native American populations admixed with post-Columbian European and African sources at different times, with few cases of prolonged isolation. With our results we emphasize the importance of including understudied regions of the continent in high-resolution genetic studies, and we illustrate the potential of SNP chip arrays for informative regional-scale analysis.

Published
2019

13. The immunogenetic diversity of the HLA system in Mexico correlates with underlying population genetic structure

Author

Barquera, Rodrigo, Hernández-Zaragoza, Diana Iraíz, Bravo-Acevedo, Alicia, Arrieta-Bolaños, Esteban, Clayton, Stephen, Acuña-Alonzo, Víctor, Martínez-Álvarez, Julio César, López-Gil, Concepción, Adalid-Sáinz, Carmen, Vega-Martínez, María del Rosario, Escobedo-Ruíz, Araceli, Juárez-Cortés, Eva Dolores, Immel, Alexander, Pacheco-Ubaldo, Hanna, González-Medina, Liliana, Lona-Sánchez, Abraham, Lara-Riegos, Julio, Sánchez-Fernández, María Guadalupe de Jesús, Díaz-López, Rosario, Guizar-López, Gregorio Ulises, Medina-Escobedo, Carolina Elizabeth, Arrazola-García, María Araceli, Montiel-Hernández, Gustavo Daniel, Hernández-Hernández, Ofelia, Ramos-de la Cruz, Flor del Rocío, Juárez-Nicolás, Francisco, Pantoja-Torres, Jorge Arturo, Rodríguez-Munguía, Tirzo Jesús, Juárez-Barreto, Vicencio, Delgado-Aguirre, Héctor, Escutia-González, Ariadna Berenice, Goné-Vázquez, Isis, Benítez-Arvizu, Gamaliel, Arellano-Prado, Francia Paulina, García-Arias, Víctor Eduardo, Rodríguez-López, Marla Estefanía, Méndez-Mani, Patricia, García-Álvarez, Raquel, González-Martínez, Marisela del Rocío, Aquino-Rubio, Guadalupe, Escareño-Montiel, Néstor, Vázquez-Castillo, Tannya Verónica, Uribe-Duarte, María Guadalupe, Ruíz-Corral, María de Jesús, Ortega-Yáñez, Andrea, Bernal-Felipe, Natalia, Gómez-Navarro, Benjamín, Arriaga-Perea, Agustín Jericó, Martínez-Bezies, Virginia, Macías-Medrano, Rosa María, Aguilar-Campos, Jesús Abraham, Solís-Martínez, Raúl, Serrano-Osuna, Ricardo, Sandoval-Sandoval, Mario J., Jaramillo-Rodríguez, Yolanda, Salgado-Adame, Antonio, Juárez-de la Cruz, Federico, Novelo-Garza, Bárbara, Pavón-Vargas, María de los Ángeles, Salgado-Galicia, Norma, Bortolini, Maria Cátira, Gallo, Carla, Bedoya, Gabriel, Rothhammer, Francisco, González-José, Rolando, Ruiz-Linares, Andrés, Canizales-Quinteros, Samuel, Romero-Hidalgo, Sandra, Krause, Johannes, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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15. Origin and Health Status of First-Generation Africans from Early Colonial Mexico

Author

Barquera, Rodrigo, Lamnidis, Thiseas C., Lankapalli, Aditya Kumar, Kocher, Arthur, Hernández-Zaragoza, Diana I., Nelson, Elizabeth A., Zamora-Herrera, Adriana C., Ramallo, Patxi, Bernal-Felipe, Natalia, Immel, Alexander, Bos, Kirsten, Acuña-Alonzo, Víctor, Barbieri, Chiara, Roberts, Patrick, Herbig, Alexander, Kühnert, Denise, Márquez-Morfín, Lourdes, and Krause, Johannes

Published
2020
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16. Ancient Plasmodium genomes shed light on the history of human malaria

Author

Universidad de Alicante. Departamento de Prehistoria, Arqueología, Historia Antigua, Filología Griega y Filología Latina, Universidad de Alicante. Departamento de Biotecnología, Universidad de Alicante. Instituto Universitario de Investigación en Arqueología y Patrimonio Histórico, Michel, Megan, Skourtanioti, Eirini, Pierini, Federica, Guevara, Evelyn K., Mötsch, Angela, Kocher, Arthur, Barquera, Rodrigo, Bianco, Raffaela A., Carlhoff, Selina, Coppola Bove, Lorenza, Freilich, Suzanne, Giffin, Karen, Hermes, Taylor, Hiß, Alina, Knolle, Florian, Nelson, Elizabeth A., Neumann, Gunnar U., Papac, Luka, Penske, Sandra, Rohrlach, Adam B., Salem, Nada, Semerau, Lena, Villalba-Mouco, Vanessa, Abadie, Isabelle, Aldenderfer, Mark, Beckett, Jessica F., Brown, Matthew, Campus, Franco G. R., Chenghwa, Tsang, Berrocal, María Cruz, Damašek, Ladislav, Duffett Carlson, Kellie Sara, Durand, Raphaël, Ernée, Michal, Fântăneanu, Cristinel, Frenzel, Hannah, García Atiénzar, Gabriel, Guillén, Sonia, Hsieh, Ellen, Karwowski, Maciej, Kelvin, David, Kelvin, Nikki, Khokhlov, Alexander, Kinaston, Rebecca L., Korolev, Arkadii, Krettek, Kim-Louise, Küßner, Mario, Lai, Luca, Look, Cory, Majander, Kerttu, Mandl, Kirsten, Mazzarello, Vittorio, McCormick, Michael, Miguel Ibáñez, María Paz de, Murphy, Reg, Németh, Rita E., Nordqvist, Kerkko, Novotny, Friederike, Obenaus, Martin, Olmo-Enciso, Lauro, Onkamo, Päivi, Orschiedt, Jörg, Patrushev, Valerii, Peltola, Sanni, Romero, Alejandro, Rubino, Salvatore, Sajantila, Antti, Salazar-García, Domingo C., Serrano Herrero, Elena, Shaydullaev, Shapulat, Sias, Emanuela, Šlaus, Mario, Stančo, Ladislav, Swanston, Treena, Teschler-Nicola, Maria, Valentin, Frederique, Van de Vijver, Katrien, Varney, Tamara L., Vigil-Escalera Guirado, Alfonso, Waters, Christopher K., Weiss-Krejci, Estella, Winter, Eduard, Lamnidis, Thiseas C., Prüfer, Kay, Nägele, Kathrin, Spyrou, Maria A., Schiffels, Stephan, Stockhammer, Philipp W., Haak, Wolfgang, Posth, Cosimo, Warinner, Christina, Bos, Kirsten, Herbig, Alexander, Krause, Johannes, Universidad de Alicante. Departamento de Prehistoria, Arqueología, Historia Antigua, Filología Griega y Filología Latina, Universidad de Alicante. Departamento de Biotecnología, Universidad de Alicante. Instituto Universitario de Investigación en Arqueología y Patrimonio Histórico, Michel, Megan, Skourtanioti, Eirini, Pierini, Federica, Guevara, Evelyn K., Mötsch, Angela, Kocher, Arthur, Barquera, Rodrigo, Bianco, Raffaela A., Carlhoff, Selina, Coppola Bove, Lorenza, Freilich, Suzanne, Giffin, Karen, Hermes, Taylor, Hiß, Alina, Knolle, Florian, Nelson, Elizabeth A., Neumann, Gunnar U., Papac, Luka, Penske, Sandra, Rohrlach, Adam B., Salem, Nada, Semerau, Lena, Villalba-Mouco, Vanessa, Abadie, Isabelle, Aldenderfer, Mark, Beckett, Jessica F., Brown, Matthew, Campus, Franco G. R., Chenghwa, Tsang, Berrocal, María Cruz, Damašek, Ladislav, Duffett Carlson, Kellie Sara, Durand, Raphaël, Ernée, Michal, Fântăneanu, Cristinel, Frenzel, Hannah, García Atiénzar, Gabriel, Guillén, Sonia, Hsieh, Ellen, Karwowski, Maciej, Kelvin, David, Kelvin, Nikki, Khokhlov, Alexander, Kinaston, Rebecca L., Korolev, Arkadii, Krettek, Kim-Louise, Küßner, Mario, Lai, Luca, Look, Cory, Majander, Kerttu, Mandl, Kirsten, Mazzarello, Vittorio, McCormick, Michael, Miguel Ibáñez, María Paz de, Murphy, Reg, Németh, Rita E., Nordqvist, Kerkko, Novotny, Friederike, Obenaus, Martin, Olmo-Enciso, Lauro, Onkamo, Päivi, Orschiedt, Jörg, Patrushev, Valerii, Peltola, Sanni, Romero, Alejandro, Rubino, Salvatore, Sajantila, Antti, Salazar-García, Domingo C., Serrano Herrero, Elena, Shaydullaev, Shapulat, Sias, Emanuela, Šlaus, Mario, Stančo, Ladislav, Swanston, Treena, Teschler-Nicola, Maria, Valentin, Frederique, Van de Vijver, Katrien, Varney, Tamara L., Vigil-Escalera Guirado, Alfonso, Waters, Christopher K., Weiss-Krejci, Estella, Winter, Eduard, Lamnidis, Thiseas C., Prüfer, Kay, Nägele, Kathrin, Spyrou, Maria A., Schiffels, Stephan, Stockhammer, Philipp W., Haak, Wolfgang, Posth, Cosimo, Warinner, Christina, Bos, Kirsten, Herbig, Alexander, and Krause, Johannes

Abstract

Malaria-causing protozoa of the genus Plasmodium have exerted one of the strongest selective pressures on the human genome, and resistance alleles provide biomolecular footprints that outline the historical reach of these species1. Nevertheless, debate persists over when and how malaria parasites emerged as human pathogens and spread around the globe1,2. To address these questions, we generated high-coverage ancient mitochondrial and nuclear genome-wide data from P. falciparum, P. vivax and P. malariae from 16 countries spanning around 5,500 years of human history. We identified P. vivax and P. falciparum across geographically disparate regions of Eurasia from as early as the fourth and first millennia bce, respectively; for P. vivax, this evidence pre-dates textual references by several millennia3. Genomic analysis supports distinct disease histories for P. falciparum and P. vivax in the Americas: similarities between now-eliminated European and peri-contact South American strains indicate that European colonizers were the source of American P. vivax, whereas the trans-Atlantic slave trade probably introduced P. falciparum into the Americas. Our data underscore the role of cross-cultural contacts in the dissemination of malaria, laying the biomolecular foundation for future palaeo-epidemiological research into the impact of Plasmodium parasites on human history. Finally, our unexpected discovery of P. falciparum in the high-altitude Himalayas provides a rare case study in which individual mobility can be inferred from infection status, adding to our knowledge of cross-cultural connectivity in the region nearly three millennia ago.

Published
2024

19. Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry

Author

Immel, Alexander, Pierini, Federica, Rinne, Christoph, Meadows, John, Barquera, Rodrigo, Szolek, András, Susat, Julian, Böhme, Lisa, Dose, Janina, Bonczarowska, Joanna, Drummer, Clara, Fuchs, Katharina, Ellinghaus, David, Kässens, Jan Christian, Furholt, Martin, Kohlbacher, Oliver, Schade-Lindig, Sabine, Franke, Andre, Schreiber, Stefan, Krause, Johannes, Müller, Johannes, Lenz, Tobias L., Nebel, Almut, and Krause-Kyora, Ben

Published
2021
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20. High performance of rapid influenza diagnostic test and variable effectiveness of influenza vaccines in Mexico

Author

Castillejos, Manuel, Cabello-Gutiérrez, Carlos, Alberto Choreño-Parra, José, Hernández, Víctor, Romo, Javier, Hernández-Sánchez, Fernando, Martínez, Dina, Hernández, Andrés, Jiménez-Álvarez, Luis, Hernández-Cardenas, Carmen M., Becerril-Vargas, Eduardo, Martínez-Orozco, José A., Luis Sandoval-Gutiérrez, José, Guadarrama, Cristóbal, Olvera-Masetto, Enrique, Alfaro-Ramos, Leticia, Cruz-Lagunas, Alfredo, Ramírez, Gustavo, Márquez, Eduardo, Pimentel, Lisa, Regino-Zamarripa, Nora E., Mendoza-Milla, Criselda, Goodina, Aminadab, Hernández-Montiel, Erika, Barquera, Rodrigo, Santibañez, Alfredo, Domínguez-Cherit, Guillermo, Pérez-Padilla, Rogelio, Regalado, Justino, Santillán-Doherty, Patricio, Salas-Hernández, Jorge, and Zúñiga, Joaquín

Published
2019
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22. Germline mutations in pediatric cancer cohort with mixed‐ancestry Mexicans

Author

Alonso‐Luna, Oscar, primary, Mercado‐Celis, Gabriela E., additional, Melendez‐Zajgla, Jorge, additional, Barquera, Rodrigo, additional, Zapata‐Tarres, Marta, additional, Juárez‐Villegas, Luis Enrique, additional, Mendoza‐Caamal, Elvia Cristina, additional, Rey‐Helo, Elianeth, additional, and Borges‐Yañez, Socorro Aida, additional

Published
2023
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23. Ancient Plasmodiumgenomes shed light on the history of human malaria

Author

Michel, Megan, Skourtanioti, Eirini, Pierini, Federica, Guevara, Evelyn K., Mötsch, Angela, Kocher, Arthur, Barquera, Rodrigo, Bianco, Raffaela A., Carlhoff, Selina, Coppola Bove, Lorenza, Freilich, Suzanne, Giffin, Karen, Hermes, Taylor, Hiß, Alina, Knolle, Florian, Nelson, Elizabeth A., Neumann, Gunnar U., Papac, Luka, Penske, Sandra, Rohrlach, Adam B., Salem, Nada, Semerau, Lena, Villalba-Mouco, Vanessa, Abadie, Isabelle, Aldenderfer, Mark, Beckett, Jessica F., Brown, Matthew, Campus, Franco G. R., Chenghwa, Tsang, Cruz Berrocal, María, Damašek, Ladislav, Duffett Carlson, Kellie Sara, Durand, Raphaël, Ernée, Michal, Fântăneanu, Cristinel, Frenzel, Hannah, García Atiénzar, Gabriel, Guillén, Sonia, Hsieh, Ellen, Karwowski, Maciej, Kelvin, David, Kelvin, Nikki, Khokhlov, Alexander, Kinaston, Rebecca L., Korolev, Arkadii, Krettek, Kim-Louise, Küßner, Mario, Lai, Luca, Look, Cory, Majander, Kerttu, Mandl, Kirsten, Mazzarello, Vittorio, McCormick, Michael, de Miguel Ibáñez, Patxuka, Murphy, Reg, Németh, Rita E., Nordqvist, Kerkko, Novotny, Friederike, Obenaus, Martin, Olmo-Enciso, Lauro, Onkamo, Päivi, Orschiedt, Jörg, Patrushev, Valerii, Peltola, Sanni, Romero, Alejandro, Rubino, Salvatore, Sajantila, Antti, Salazar-García, Domingo C., Serrano, Elena, Shaydullaev, Shapulat, Sias, Emanuela, Šlaus, Mario, Stančo, Ladislav, Swanston, Treena, Teschler-Nicola, Maria, Valentin, Frederique, Van de Vijver, Katrien, Varney, Tamara L., Vigil-Escalera Guirado, Alfonso, Waters, Christopher K., Weiss-Krejci, Estella, Winter, Eduard, Lamnidis, Thiseas C., Prüfer, Kay, Nägele, Kathrin, Spyrou, Maria, Schiffels, Stephan, Stockhammer, Philipp W., Haak, Wolfgang, Posth, Cosimo, Warinner, Christina, Bos, Kirsten I., Herbig, Alexander, and Krause, Johannes

Abstract

Malaria-causing protozoa of the genus Plasmodiumhave exerted one of the strongest selective pressures on the human genome, and resistance alleles provide biomolecular footprints that outline the historical reach of these species1. Nevertheless, debate persists over when and how malaria parasites emerged as human pathogens and spread around the globe1,2. To address these questions, we generated high-coverage ancient mitochondrial and nuclear genome-wide data from P. falciparum, P. vivaxand P. malariaefrom 16 countries spanning around 5,500 years of human history. We identified P. vivaxand P. falciparumacross geographically disparate regions of Eurasia from as early as the fourth and first millennia bce, respectively; for P. vivax, this evidence pre-dates textual references by several millennia3. Genomic analysis supports distinct disease histories for P. falciparumand P. vivaxin the Americas: similarities between now-eliminated European and peri-contact South American strains indicate that European colonizers were the source of American P. vivax, whereas the trans-Atlantic slave trade probably introduced P. falciparuminto the Americas. Our data underscore the role of cross-cultural contacts in the dissemination of malaria, laying the biomolecular foundation for future palaeo-epidemiological research into the impact of Plasmodiumparasites on human history. Finally, our unexpected discovery of P. falciparumin the high-altitude Himalayas provides a rare case study in which individual mobility can be inferred from infection status, adding to our knowledge of cross-cultural connectivity in the region nearly three millennia ago.

Published
2024
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24. Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population

Author

Romero-Hidalgo, Sandra, Flores-Rivera, José, Rivas-Alonso, Verónica, Barquera, Rodrigo, Villarreal-Molina, María Teresa, Antuna-Puente, Bárbara, Macias-Kauffer, Luis Rodrigo, Villalobos-Comparán, Marisela, Ortiz-Maldonado, Jair, Yu, Neng, Lebedeva, Tatiana V., Alosco, Sharon M., García-Rodríguez, Juan Daniel, González-Torres, Carolina, Rosas-Madrigal, Sandra, Ordoñez, Graciela, Guerrero-Camacho, Jorge Luis, Treviño-Frenk, Irene, Escamilla-Tilch, Monica, García-Lechuga, Maricela, Tovar-Méndez, Víctor Hugo, Pacheco-Ubaldo, Hanna, Acuña-Alonzo, Victor, Bortolini, Maria-Cátira, Gallo, Carla, Bedoya, Gabriel, Rothhammer, Francisco, González-Jose, Rolando, Ruiz-Linares, Andrés, Canizales-Quinteros, Samuel, Yunis, Edmond, Granados, Julio, and Corona, Teresa

Published
2020
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25. Diversity of HLA Class I and Class II blocks and conserved extended haplotypes in Lacandon Mayans

Author

Barquera, Rodrigo, Zuniga, Joaquin, Flores-Rivera, José, Corona, Teresa, Penman, Bridget S., Hernández-Zaragoza, Diana Iraíz, Soler, Manuel, Jonapá-Gómez, Letisia, Mallempati, Kalyan C., Yescas, Petra, Ochoa-Morales, Adriana, Barsakis, Konstantinos, Aguilar-Vázquez, José Artemio, García-Lechuga, Maricela, Mindrinos, Michael, Yunis, María, Jiménez-Alvarez, Luis, Mena-Hernández, Lourdes, Ortega, Esteban, Cruz-Lagunas, Alfredo, Tovar-Méndez, Víctor Hugo, Granados, Julio, Fernández-Viña, Marcelo, and Yunis, Edmond

Published
2020
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26. On Roth’s “human fossil” from Baradero, Buenos Aires Province, Argentina: morphological and genetic analysis

Author

Menéndez, Lumila Paula; https://orcid.org/0000-0002-7867-2910, Barbieri, Chiara; https://orcid.org/0000-0001-8827-5655, López Cruz, Idalia Guadalupe, Schmelzle, Thomas, Breidenstein, Abagail M; https://orcid.org/0000-0002-1675-8399, Barquera, Rodrigo; https://orcid.org/0000-0003-0518-4518, Borzi, Guido, Schuenemann, Verena J; https://orcid.org/0000-0002-8593-3672, Sanchez-Villagra, Marcelo R; https://orcid.org/0000-0001-7587-3648, Menéndez, Lumila Paula; https://orcid.org/0000-0002-7867-2910, Barbieri, Chiara; https://orcid.org/0000-0001-8827-5655, López Cruz, Idalia Guadalupe, Schmelzle, Thomas, Breidenstein, Abagail M; https://orcid.org/0000-0002-1675-8399, Barquera, Rodrigo; https://orcid.org/0000-0003-0518-4518, Borzi, Guido, Schuenemann, Verena J; https://orcid.org/0000-0002-8593-3672, and Sanchez-Villagra, Marcelo R; https://orcid.org/0000-0001-7587-3648

Abstract

The “human fossil” from Baradero, Buenos Aires Province, Argentina, is a collection of skeleton parts first recovered by the paleontologist Santiago Roth and further studied by the anthropologist Rudolf Martin. By the end of the nineteenth century and beginning of the twentieth century it was considered one of the oldest human skeletons from South America's southern cone. Here, we present the results of an interdisciplinary approach to study and contextualize the ancient individual remains. We discuss the context of the finding by first compiling the available evidence associated with the historical information and any previous scientific publications on this individual. Then, we conducted an osteobiographical assessment, by which we evaluated the sex, age, and overall preservation of the skeleton based on morphological features. To obtain a 3D virtual reconstruction of the skull, we performed high resolution CT-scans on selected skull fragments and the mandible. This was followed by the extraction of bone tissue and tooth samples for radiocarbon and genetic analyses, which brought only limited results due to poor preservation and possible contamination. We estimate that the individual from Baradero is a middle-aged adult male. We conclude that the revision of foundational collections with current methodological tools brings new insights and clarifies long held assumptions on the significance of samples that were recovered when archaeology was not yet professionalized.

Published
2023

27. Germline mutations in pediatric cancer cohort with mixed‐ancestry Mexicans.

Author

Alonso‐Luna, Oscar, Mercado‐Celis, Gabriela E., Melendez‐Zajgla, Jorge, Barquera, Rodrigo, Zapata‐Tarres, Marta, Juárez‐Villegas, Luis Enrique, Mendoza‐Caamal, Elvia Cristina, Rey‐Helo, Elianeth, and Borges‐Yañez, Socorro Aida

Subjects
CHILDHOOD cancer, LATIN Americans, GERM cells, HEMATOLOGIC malignancies, POPULATION genetics, CHILD death
Abstract

Background: Childhood cancer is one of the primary causes of disease‐related death in 5‐ to 14‐year‐old children and currently no prevention strategies exist to reduce the incidence of this disease. Childhood cancer has a larger hereditary component compared with cancer in adults. Few genetic studies have been conducted on children with cancer. Additionally, Latin American populations are underrepresented in genomic studies compared with other populations. Therefore, the aim of this study is to analyze germline mutations in a group of mixed‐ancestry Mexican pediatric patients with solid and hematological cancers. Methods: We analyzed genetic variants from 40 Mexican childhood cancer patients and their relatives. DNA from saliva or blood samples was used for whole‐exome sequencing. All variants were identified following GATK best practices. Results: We found that six patients (15%) were carriers of germline mutations in CDKN2A, CHEK2, DICER1, FANCA, MSH6, MUTYH, NF1, and SBDS cancer predisposition genes, and additional new variants predicted to be deleterious by in silico algorithms. A population genetics analysis detected five components consistent with the demographic models assumed for modern mixed‐ancestry Mexicans. Conclusions: This report identifies potential genetic risk factors and provides a better understanding of the underlying mechanisms of childhood cancer in this population. [ABSTRACT FROM AUTHOR]

Published
2024
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30. Latin Americans show wide-spread Converso ancestry and imprint of local Native ancestry on physical appearance

Author

Chacón-Duque, Juan-Camilo, Adhikari, Kaustubh, Fuentes-Guajardo, Macarena, Mendoza-Revilla, Javier, Acuña-Alonzo, Victor, Barquera, Rodrigo, Quinto-Sánchez, Mirsha, Gómez-Valdés, Jorge, Everardo Martínez, Paola, Villamil-Ramírez, Hugo, Hünemeier, Tábita, Ramallo, Virginia, Silva de Cerqueira, Caio C., Hurtado, Malena, Villegas, Valeria, Granja, Vanessa, Villena, Mercedes, Vásquez, René, Llop, Elena, Sandoval, José R., Salazar-Granara, Alberto A., Parolin, Maria-Laura, Sandoval, Karla, Peñaloza-Espinosa, Rosenda I., Rangel-Villalobos, Hector, Winkler, Cheryl A., Klitz, William, Bravi, Claudio, Molina, Julio, Corach, Daniel, Barrantes, Ramiro, Gomes, Verónica, Resende, Carlos, Gusmão, Leonor, Amorim, Antonio, Xue, Yali, Dugoujon, Jean-Michel, Moral, Pedro, González-José, Rolando, Schuler-Faccini, Lavinia, Salzano, Francisco M., Bortolini, Maria-Cátira, Canizales-Quinteros, Samuel, Poletti, Giovanni, Gallo, Carla, Bedoya, Gabriel, Rothhammer, Francisco, Balding, David, Hellenthal, Garrett, and Ruiz-Linares, Andrés

Published
2018
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31. Differential Leukocyte Expression of IFITM1 and IFITM3 in Patients with Severe Pandemic Influenza A(H1N1) and COVID-19

Author

Regino-Zamarripa, Nora E., primary, Ramírez-Martínez, Gustavo, additional, Jiménez-Álvarez, Luis Armando, additional, Cruz-Lagunas, Alfredo, additional, Gómez-García, Itzel Alejandra, additional, Ignacio-Cortés, Sergio, additional, Márquez-García, José Eduardo, additional, Pacheco-Hernández, Lynette Miroslava, additional, Ramírez-Noyola, Jazmín Ariadna, additional, Barquera, Rodrigo, additional, Mendoza-Milla, Criselda, additional, Luna-Rivero, Cesar, additional, Domínguez-Cherit, José Guillermo, additional, Ramírez-Rangel, Remedios, additional, Rodríguez-Reyna, Tatiana Sofía, additional, Hernández-Cárdenas, Carmen M., additional, Choreño-Parra, José Alberto, additional, León-Ávila, Gloria, additional, and Zúñiga, Joaquín, additional

Published
2022
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32. Disentangling Signatures of Selection Before and After European Colonization in Latin Americans

Author

Mendoza-Revilla, Javier, Chacón-Duque, J. Camilo, Fuentes-Guajardo, Macarena, Ormond, Louise, Wang, Ke, Hurtado, Malena, Villegas, Valeria, Granja, Vanessa, Acuña-Alonzo, Victor, Jaramillo, Claudia, Arias, William, Barquera, Rodrigo, Gómez-Valdés, Jorge, Villamil-Ramírez, Hugo, de Cerqueira, Caio C. Silva, Rivera, Keyla M. Badillo, Nieves-Colón, Maria A., Gignoux, Christopher R., Wojcik, Genevieve L., Moreno-Estrada, Andrés, Hünemeier, Tábita, Ramallo, Virginia, Schuler-Faccini, Lavinia, Gonzalez-José, Rolando, Bortolini, Maria-Cátira, Canizales-Quinteros, Samuel, Gallo, Carla, Poletti, Giovanni, Bedoya, Gabriel, Rothhammer, Francisco, Balding, David, Fumagalli, Matteo, Adhikari, Kaustubh, Ruiz-Linares, Andrés, Hellenthal, Garrett, Mendoza-Revilla, Javier, Chacón-Duque, J. Camilo, Fuentes-Guajardo, Macarena, Ormond, Louise, Wang, Ke, Hurtado, Malena, Villegas, Valeria, Granja, Vanessa, Acuña-Alonzo, Victor, Jaramillo, Claudia, Arias, William, Barquera, Rodrigo, Gómez-Valdés, Jorge, Villamil-Ramírez, Hugo, de Cerqueira, Caio C. Silva, Rivera, Keyla M. Badillo, Nieves-Colón, Maria A., Gignoux, Christopher R., Wojcik, Genevieve L., Moreno-Estrada, Andrés, Hünemeier, Tábita, Ramallo, Virginia, Schuler-Faccini, Lavinia, Gonzalez-José, Rolando, Bortolini, Maria-Cátira, Canizales-Quinteros, Samuel, Gallo, Carla, Poletti, Giovanni, Bedoya, Gabriel, Rothhammer, Francisco, Balding, David, Fumagalli, Matteo, Adhikari, Kaustubh, Ruiz-Linares, Andrés, and Hellenthal, Garrett

Abstract

Throughout human evolutionary history, large-scale migrations have led to intermixing (i.e., admixture) between previously separated human groups. Although classical and recent work have shown that studying admixture can yield novel historical insights, the extent to which this process contributed to adaptation remains underexplored. Here, we introduce a novel statistical model, specific to admixed populations, that identifies loci under selection while determining whether the selection likely occurred post-admixture or prior to admixture in one of the ancestral source populations. Through extensive simulations, we show that this method is able to detect selection, even in recently formed admixed populations, and to accurately differentiate between selection occurring in the ancestral or admixed population. We apply this method to genome-wide SNP data of ∼4,000 individuals in five admixed Latin American cohorts from Brazil, Chile, Colombia, Mexico, and Peru. Our approach replicates previous reports of selection in the human leukocyte antigen region that are consistent with selection post-admixture. We also report novel signals of selection in genomic regions spanning 47 genes, reinforcing many of these signals with an alternative, commonly used local-ancestry-inference approach. These signals include several genes involved in immunity, which may reflect responses to endemic pathogens of the Americas and to the challenge of infectious disease brought by European contact. In addition, some of the strongest signals inferred to be under selection in the Native American ancestral groups of modern Latin Americans overlap with genes implicated in energy metabolism phenotypes, plausibly reflecting adaptations to novel dietary sources available in the Americas.

Published
2022
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34. Population Genetics and Signatures of Selection in Early Neolithic European Farmers

Author

Childebayeva, Ainash, primary, Rohrlach, Adam Benjamin, additional, Barquera, Rodrigo, additional, Rivollat, Maïté, additional, Aron, Franziska, additional, Szolek, András, additional, Kohlbacher, Oliver, additional, Nicklisch, Nicole, additional, Alt, Kurt W., additional, Gronenborn, Detlef, additional, Meller, Harald, additional, Friederich, Susanne, additional, Prüfer, Kay, additional, Deguilloux, Marie-France, additional, Krause, Johannes, additional, and Haak, Wolfgang, additional

Published
2022
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35. Disentangling Signatures of Selection Before and After European Colonization in Latin Americans

Author

Mendoza-Revilla, Javier, primary, Chacón-Duque, J. Camilo, additional, Fuentes-Guajardo, Macarena, additional, Ormond, Louise, additional, Wang, Ke, additional, Hurtado, Malena, additional, Villegas, Valeria, additional, Granja, Vanessa, additional, Acuña-Alonzo, Victor, additional, Jaramillo, Claudia, additional, Arias, William, additional, Barquera, Rodrigo, additional, Gómez-Valdés, Jorge, additional, Villamil-Ramírez, Hugo, additional, Silva de Cerqueira, Caio C., additional, Badillo Rivera, Keyla M., additional, Nieves-Colón, Maria A., additional, Gignoux, Christopher R., additional, Wojcik, Genevieve L., additional, Moreno-Estrada, Andrés, additional, Hünemeier, Tábita, additional, Ramallo, Virginia, additional, Schuler-Faccini, Lavinia, additional, Gonzalez-José, Rolando, additional, Bortolini, Maria-Cátira, additional, Canizales-Quinteros, Samuel, additional, Gallo, Carla, additional, Poletti, Giovanni, additional, Bedoya, Gabriel, additional, Rothhammer, Francisco, additional, Balding, David, additional, Fumagalli, Matteo, additional, Adhikari, Kaustubh, additional, Ruiz-Linares, Andrés, additional, and Hellenthal, Garrett, additional

Published
2022
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36. Fully automatic landmarking of 2D photographs identifies novel genetic loci influencing facial features

Author

Li, Qing, primary, Chen, Jieyi, additional, Faux, Pierre, additional, Bonfante, Betty, additional, Fuentes-Guajardo, Macarena, additional, Mendoza-Revilla, Javier, additional, Chacón-Duque, Juan, additional, Hurtado, Malena, additional, Villegas, Valeria, additional, Granja, Vanessa, additional, Jaramillo, Claudia, additional, Arias, William, additional, Barquera, Rodrigo, additional, Everardo-Martínez, Paola, additional, Sánchez-Quinto, Mirsha, additional, Gómez-Valdés, Jorge, additional, Villamil-Ramírez, Hugo, additional, de Cerqueira, Caio C. Silva, additional, Hünemeier, Tábita, additional, Ramallo, Virginia, additional, Wu, Sijie, additional, Du, Siyuan, additional, Gonzalez-José, Rolando, additional, Schüler-Faccini, Lavinia, additional, Bortolini, Maria-Cátira, additional, Acuña-Alonzo, Victor, additional, Canizales-Quinteros, Samuel, additional, Gallo, Carla, additional, Poletti, Giovanni, additional, Rojas, Winston, additional, Rothhammer, Francisco, additional, Navarro, Nicolas, additional, Wang, Sijia, additional, Adhikari, Kaustubh, additional, and Ruiz-Linares, Andrés, additional

Published
2022
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38. Crossroads: A conversation among disciplines

Author

Barquera, Rodrigo

Subjects
aDNA, Population genetics, Interdisciplinary work, Strontium isotopes
Abstract

Presentation for the workshop: The reconstruction of human history through an interdisciplinary approach.

Published
2021
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39. Ten millennia of hepatitis B virus evolution

Author

Kocher, Arthur, primary, Papac, Luka, additional, Barquera, Rodrigo, additional, Key, Felix M., additional, Spyrou, Maria A., additional, Hübler, Ron, additional, Rohrlach, Adam B., additional, Aron, Franziska, additional, Stahl, Raphaela, additional, Wissgott, Antje, additional, van Bömmel, Florian, additional, Pfefferkorn, Maria, additional, Mittnik, Alissa, additional, Villalba-Mouco, Vanessa, additional, Neumann, Gunnar U., additional, Rivollat, Maïté, additional, van de Loosdrecht, Marieke S., additional, Majander, Kerttu, additional, Tukhbatova, Rezeda I., additional, Musralina, Lyazzat, additional, Ghalichi, Ayshin, additional, Penske, Sandra, additional, Sabin, Susanna, additional, Michel, Megan, additional, Gretzinger, Joscha, additional, Nelson, Elizabeth A., additional, Ferraz, Tiago, additional, Nägele, Kathrin, additional, Parker, Cody, additional, Keller, Marcel, additional, Guevara, Evelyn K., additional, Feldman, Michal, additional, Eisenmann, Stefanie, additional, Skourtanioti, Eirini, additional, Giffin, Karen, additional, Gnecchi-Ruscone, Guido Alberto, additional, Friederich, Susanne, additional, Schimmenti, Vittoria, additional, Khartanovich, Valery, additional, Karapetian, Marina K., additional, Chaplygin, Mikhail S., additional, Kufterin, Vladimir V., additional, Khokhlov, Aleksandr A., additional, Chizhevsky, Andrey A., additional, Stashenkov, Dmitry A., additional, Kochkina, Anna F., additional, Tejedor-Rodríguez, Cristina, additional, de Lagrán, Íñigo García-Martínez, additional, Arcusa-Magallón, Héctor, additional, Garrido-Pena, Rafael, additional, Royo-Guillén, José Ignacio, additional, Nováček, Jan, additional, Rottier, Stéphane, additional, Kacki, Sacha, additional, Saintot, Sylvie, additional, Kaverzneva, Elena, additional, Belinskiy, Andrej B., additional, Velemínský, Petr, additional, Limburský, Petr, additional, Kostka, Michal, additional, Loe, Louise, additional, Popescu, Elizabeth, additional, Clarke, Rachel, additional, Lyons, Alice, additional, Mortimer, Richard, additional, Sajantila, Antti, additional, de Armas, Yadira Chinique, additional, Hernandez Godoy, Silvia Teresita, additional, Hernández-Zaragoza, Diana I., additional, Pearson, Jessica, additional, Binder, Didier, additional, Lefranc, Philippe, additional, Kantorovich, Anatoly R., additional, Maslov, Vladimir E., additional, Lai, Luca, additional, Zoledziewska, Magdalena, additional, Beckett, Jessica F., additional, Langová, Michaela, additional, Danielisová, Alžběta, additional, Ingman, Tara, additional, Atiénzar, Gabriel García, additional, de Miguel Ibáñez, Maria Paz, additional, Romero, Alejandro, additional, Sperduti, Alessandra, additional, Beckett, Sophie, additional, Salter, Susannah J., additional, Zilivinskaya, Emma D., additional, Vasil’ev, Dmitry V., additional, von Heyking, Kristin, additional, Burger, Richard L., additional, Salazar, Lucy C., additional, Amkreutz, Luc, additional, Navruzbekov, Masnav, additional, Rosenstock, Eva, additional, Alonso-Fernández, Carmen, additional, Slavchev, Vladimir, additional, Kalmykov, Alexey A., additional, Atabiev, Biaslan Ch., additional, Batieva, Elena, additional, Calmet, Micaela Alvarez, additional, Llamas, Bastien, additional, Schultz, Michael, additional, Krauß, Raiko, additional, Jiménez-Echevarría, Javier, additional, Francken, Michael, additional, Shnaider, Svetlana, additional, de Knijff, Peter, additional, Altena, Eveline, additional, Van de Vijver, Katrien, additional, Fehren-Schmitz, Lars, additional, Tung, Tiffiny A., additional, Lösch, Sandra, additional, Dobrovolskaya, Maria, additional, Makarov, Nikolaj, additional, Read, Chris, additional, Van Twest, Melanie, additional, Sagona, Claudia, additional, Ramsl, Peter C., additional, Akar, Murat, additional, Yener, K. Aslihan, additional, Ballestero, Eduardo Carmona, additional, Cucca, Francesco, additional, Mazzarello, Vittorio, additional, Utrilla, Pilar, additional, Rademaker, Kurt, additional, Fernández-Domínguez, Eva, additional, Baird, Douglas, additional, Semal, Patrick, additional, Márquez-Morfín, Lourdes, additional, Roksandic, Mirjana, additional, Steiner, Hubert, additional, Salazar-García, Domingo Carlos, additional, Shishlina, Natalia, additional, Erdal, Yilmaz Selim, additional, Hallgren, Fredrik, additional, Boyadzhiev, Yavor, additional, Boyadzhiev, Kamen, additional, Küßner, Mario, additional, Sayer, Duncan, additional, Onkamo, Päivi, additional, Skeates, Robin, additional, Rojo-Guerra, Manuel, additional, Buzhilova, Alexandra, additional, Khussainova, Elmira, additional, Djansugurova, Leyla B., additional, Beisenov, Arman Z., additional, Samashev, Zainolla, additional, Massy, Ken, additional, Mannino, Marcello, additional, Moiseyev, Vyacheslav, additional, Mannermaa, Kristiina, additional, Balanovsky, Oleg, additional, Deguilloux, Marie-France, additional, Reinhold, Sabine, additional, Hansen, Svend, additional, Kitov, Egor P., additional, Dobeš, Miroslav, additional, Ernée, Michal, additional, Meller, Harald, additional, Alt, Kurt W., additional, Prüfer, Kay, additional, Warinner, Christina, additional, Schiffels, Stephan, additional, Stockhammer, Philipp W., additional, Bos, Kirsten, additional, Posth, Cosimo, additional, Herbig, Alexander, additional, Haak, Wolfgang, additional, Krause, Johannes, additional, and Kühnert, Denise, additional

Published
2021
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40. Genetic diversity of HLA system in a population sample from Aguascalientes, Mexico

Author

Bravo-Acevedo, Alicia, Barquera, Rodrigo, Arrieta-Bolaños, Esteban, Hernández-Zaragoza, Diana Iraíz, Clayton, Stephen, Goné-Vázquez, Isis, Escobedo-Ruíz, Araceli, Pantoja-Torres, Jorge Arturo, Adalid-Sáinz, Carmen, Pacheco-Ubaldo, Hanna, Martínez-Álvarez, Julio César, González-Martínez, Marisela del Rocío, Lona-Sánchez, Abraham, González-Medina, Liliana, Escareño-Montiel, Néstor, Arrazola-García, María Araceli, Juárez-Barreto, Vicencio, Benítez-Arvizu, Gamaliel, Delgado-Aguirre, Héctor, Sánchez-Fernández, María Guadalupe de Jesús, Sandoval-Sandoval, Mario J., Jaramillo-Rodríguez, Yolanda, Gómez-Navarro, Benjamín, Salgado-Adame, Antonio, Juárez-de la Cruz, Federico, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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43. Genetic diversity of HLA system in two populations from Oaxaca, Mexico: Oaxaca city and rural Oaxaca

Author

Hernández-Hernández, Ofelia, Hernández-Zaragoza, Diana Iraíz, Barquera, Rodrigo, Warinner, Christina, López-Gil, Concepción, Arrieta-Bolaños, Esteban, Clayton, Stephen, Bravo-Acevedo, Alicia, Ramos-de la Cruz, Flor del Rocío, Méndez-Mani, Patricia, Pavón-Vargas, María de los Ángeles, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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44. Genetic diversity of HLA system in three populations from Coahuila, Mexico: Torreón, Saltillo and rural Coahuila

Author

Adalid-Sáinz, Carmen, Barquera, Rodrigo, Crawford, Michael H., Lona-Sánchez, Abraham, Clayton, Stephen, Arrieta-Bolaños, Esteban, Delgado-Aguirre, Héctor, González-Medina, Liliana, Pacheco-Ubaldo, Hanna, Hernández-Zaragoza, Diana Iraíz, Bravo-Acevedo, Alicia, Escareño-Montiel, Néstor, Morán-Martínez, Javier, González-Martínez, Marisela del Rocío, Jaramillo-Rodríguez, Yolanda, Salgado-Adame, Antonio, Juárez-de la Cruz, Federico, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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46. Genetic diversity of HLA system in two populations from Campeche, Mexico: Campeche city and rural Campeche

Author

Barquera, Rodrigo, Lara-Riegos, Julio, Ponnandai-Shanmugavel, Komathi Sree, Immel, Alexander, Arrieta-Bolaños, Esteban, Clayton, Stephen, Solís-Martínez, Raúl, Bravo-Acevedo, Alicia, Vázquez-Castillo, Tannya Verónica, Hernández-Zaragoza, Diana Iraíz, Vega-Martínez, María del Rosario, Salgado-Galicia, Norma, Medina-Escobedo, Carolina Elizabeth, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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47. Genetic diversity of HLA system in two populations from Tlaxcala, Mexico: Tlaxcala city and rural Tlaxcala

Author

Pavón-Vargas, María de los Ángeles, Crawford, Michael H., Barquera, Rodrigo, López-Gil, Concepción, Arrieta-Bolaños, Esteban, Clayton, Stephen, Hernández-Zaragoza, Diana Iraíz, Bravo-Acevedo, Alicia, Ramos-de la Cruz, Flor del Rocío, Méndez-Mani, Patricia, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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48. Genetic diversity of HLA system in two populations from Chiapas, Mexico: Tuxtla Gutiérrez and rural Chiapas

Author

Barquera, Rodrigo, Juárez-Nicolás, Francisco, Martínez-Álvarez, Julio César, Ponnandai-Shanmugavel, Komathi Sree, Hernández-Zaragoza, Diana Iraíz, Vázquez-Castillo, Tannya Verónica, Arrieta-Bolaños, Esteban, Clayton, Stephen, Solís-Martínez, Raúl, Ortega-Yáñez, Andrea, Arrazola-García, María Araceli, Immel, Alexander, Bravo-Acevedo, Alicia, Vega-Martínez, María del Rosario, Benítez-Arvizu, Gamaliel, García-Álvarez, Raquel, Martínez-Bezies, Virginia, Escutia-González, Ariadna, Juárez-Barreto, Vicencio, Salgado-Galicia, Norma, Novelo-Garza, Bárbara, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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49. Genetic diversity of HLA system in six populations from Mexico City Metropolitan Area, Mexico: Mexico City North, Mexico City South, Mexico City East, Mexico City West, Mexico City Center and rural Mexico City

Author

Barquera, Rodrigo, Martínez-Álvarez, Julio César, Hernández-Zaragoza, Diana Iraíz, Bravo-Acevedo, Alicia, Juárez-Nicolás, Francisco, Arriaga-Perea, Agustín Jericó, Vega-Martínez, María del Rosario, Ortega-Yáñez, Andrea, Benítez-Arvizu, Gamaliel, Arrieta-Bolaños, Esteban, Clayton, Stephen, Juárez-Cortés, Eva Dolores, López-Gil, Concepción, García-Álvarez, Raquel, Arrazola-García, María Araceli, Martínez-Bezies, Virginia, Juárez-Barreto, Vicencio, Ramos-de la Cruz, Flor del Rocío, Macías-Medrano, Rosa María, Méndez-Mani, Patricia, Escutia-González, Ariadna, Montiel-Hernández, Gustavo Daniel, Immel, Alexander, Pavón-Vargas, María de los Ángeles, Salgado-Galicia, Norma, Novelo-Garza, Bárbara, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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50. Genetic diversity of HLA system in two populations from Morelos, Mexico: Cuernavaca and rural Morelos

Author

Ortega-Yáñez, Andrea, Barquera, Rodrigo, Curiel-Giles, Laura, Martínez-Álvarez, Julio César, Macías-Medrano, Rosa María, Arrieta-Bolaños, Esteban, Clayton, Stephen, Bravo-Acevedo, Alicia, Hernández-Zaragoza, Diana Iraíz, Immel, Alexander, Vega-Martínez, María del Rosario, Benítez-Arvizu, Gamaliel, Arrazola-García, María Araceli, Arriaga-Perea, Agustín Jericó, Juárez-Cortés, Eva Dolores, Juárez-Barreto, Vicencio, Salgado-Galicia, Norma, Novelo-Garza, Bárbara, Zúñiga, Joaquín, Yunis, Edmond J., Bekker-Méndez, Carolina, and Granados, Julio

Published
2020
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