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10. The increasing threat to European forests from the invasive foliar pine pathogen, Lecanosticta acicola

Author

Tubby, K., primary, Adamčikova, K., additional, Adamson, K., additional, Akiba, M., additional, Barnes, I., additional, Boroń, P., additional, Bragança, H., additional, Bulgakov, T., additional, Burgdorf, N., additional, Capretti, P., additional, Cech, T., additional, Cleary, M., additional, Davydenko, K., additional, Drenkhan, R., additional, Elvira-Recuenco, M., additional, Enderle, R., additional, Gardner, J., additional, Georgieva, M., additional, Ghelardini, L., additional, Husson, C., additional, Iturritxa, E., additional, Markovskaja, S., additional, Mesanza, N., additional, Ogris, N., additional, Oskay, F., additional, Piškur, B., additional, Queloz, V., additional, Raitelaitytė, K., additional, Raposo, R., additional, Soukainen, M., additional, Strasser, L., additional, Vahalík, P., additional, Vester, M., additional, and Mullett, M., additional

Published
2023
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11. The increasing threat to European forests from the invasive foliar pine pathogen, Lecanosticta acicola

Author

Tubby K., Adamčikova K., Adamson K., Akiba M., Barnes I., Boroń P., Bragança H., Bulgakov T., Burgdorf N., Capretti P., Cech T., Cleary M., Davydenko K., Drenkhan R., Elvira-Recuenco M., Enderle R., Gardner J., Georgieva M., Ghelardini L., Husson C., Iturritxa E., Markovskaja S., Mesanza N., Ogris N., Oskay F., Piškur B., Queloz V., Raitelaitytė K., Raposo R., Soukainen M., Strasser L., Vahalík P., Vester M., Mullett M., Tubby K., Adamčikova K., Adamson K., Akiba M., Barnes I., Boroń P., Bragança H., Bulgakov T., Burgdorf N., Capretti P., Cech T., Cleary M., Davydenko K., Drenkhan R., Elvira-Recuenco M., Enderle R., Gardner J., Georgieva M., Ghelardini L., Husson C., Iturritxa E., Markovskaja S., Mesanza N., Ogris N., Oskay F., Piškur B., Queloz V., Raitelaitytė K., Raposo R., Soukainen M., Strasser L., Vahalík P., Vester M., and Mullett M.

Published
2023

16. The increasing threat to European forests from the invasive foliar pine pathogen, Lecanosticta acicola

Author

Tubby, Katherine, Adamcikova, K., Adamson, K., Akiba, M., Barnes, I., Boron, P., Braganca, H., Bulgakov, T., Capretti, P., Cleary, Michelle, Davydenko, Kateryna, Elvira-Recuenco, M., Enderle, R., Gardner, J., Geogieva, M., Ghelardini, L., Husson, C., Iturritxa, E., Markovskaja, S., Mesanza, N., Ogris, N., Piskur, B., Queloz, V., Raitelaityte, K., Raposo, R., Soukainen, M., Strasser, L., Vester, M., Vahalik, P., and Mullett, Martin

Subjects
Ecology, Forest Science
Abstract

European forests are threatened by increasing numbers of invasive pests and pathogens. Over the past century, Lecanosticta acicola, a foliar pathogen predominantly of Pinus spp., has expanded its range globally, and is increasing in impact. Lecanosticta acicola causes brown spot needle blight, resulting in premature defoliation, reduced growth, and mortality in some hosts. Originating from southern regions of North American, it devastated forests in the USA's southern states in the early twentieth century, and in 1942 was discovered in Spain.Derived from Euphresco project 'Brownspotrisk,' this study aimed to establish the current distribution of Lecanosticta species, and assess the risks of L. acicola to European forests. Pathogen reports from the literature, and new/ unpublished survey data were combined into an open-access geo-database (http://www.portaloff orestpathology.com), and used to visualise the pathogen's range, infer its climatic tolerance, and update its host range. Lecanosticta species have now been recorded in 44 countries, mostly in the northern hemisphere. The type species, L. acicola, has increased its range in recent years, and is present in 24 out of the 26 European countries where data were available. Other species of Lecanosticta are largely restricted to Mexico and Central America, and recently Colombia.The geo-database records demonstrate that L. acicola tolerates a wide range of climates across the northern hemisphere, and indicate its potential to colonise Pinus spp. forests across large swathes of the Europe. Pre-liminary analyses suggest L. acicola could affect 62% of global Pinus species area by the end of this century, under climate change predictions.Although its host range appears slightly narrower than the similar Dothistroma species, Lecanosticta species were recorded on 70 host taxa, mostly Pinus spp., but including, Cedrus and Picea spp. Twenty-three, including species of critical ecological, environmental and economic significance in Europe, are highly susceptible to L. acicola, suffering heavy defoliation and sometimes mortality. Variation in apparent susceptibility between reports could reflect variation between regions in the hosts' genetic make-up, but could also reflect the signif-icant variation in L. acicola populations and lineages found across Europe. This study served to highlight sig-nificant gaps in our understanding of the pathogen's behaviour.Lecanosticta acicola has recently been downgraded from an A1 quarantine pest to a regulated non quarantine pathogen, and is now widely distributed across Europe. With a need to consider disease management, this study also explored global BSNB strategies, and used Case Studies to summarise the tactics employed to date in Europe.

Published
2023

23. A Database for Volatile Organic Compounds

Author

Mannschreck, K., Bächmann, K., Barnes, I., Becker, K. H., Heil, Th., Kurtenbach, R., Memmesheimer, M., Mohnen, V., Obermeier, A., Poppe, D., Steinbrecher, R., Schmitz, Th., Volz-Thomas, A., Zabel, F., Seiler, W., editor, Becker, K.-H., editor, and Schaller, E., editor

Published
2002
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24. The Anglo-Saxon migration and the formation of the early English gene pool

Author

Gretzinger, J, Sayer, D, Justeau, P, Altena, E, Pala, M, Dulias, K, Edwards, CJ, Jodoin, S, Lacher, L, Sabin, S, Vågene, ÅJ, Haak, W, Ebenesersdóttir, SS, Moore, KHS, Radzeviciute, R, Schmidt, K, Brace, S, Bager, MA, Patterson, N, Papac, L, Broomandkhoshbacht, N, Callan, K, Harney, É, Iliev, L, Lawson, AM, Michel, M, Stewardson, K, Zalzala, F, Rohland, N, Kappelhoff-Beckmann, S, Both, F, Winger, D, Neumann, D, Saalow, L, Krabath, S, Beckett, S, Van Twest, M, Faulkner, N, Read, C, Barton, T, Caruth, J, Hines, J, Krause-Kyora, B, Warnke, U, Schuenemann, VJ, Barnes, I, Dahlström, H, Clausen, JJ, Richardson, A, Popescu, E, Dodwell, N, Ladd, S, Phillips, T, Mortimer, R, Sayer, F, Swales, D, Stewart, A, Powlesland, D, Kenyon, R, Ladle, L, Peek, C, Grefen-Peters, S, Ponce, P, Daniels, R, Spall, C, Woolcock, J, Jones, AM, Roberts, AV, Symmons, R, Rawden, AC, Cooper, A, Bos, KI, Booth, T, Schroeder, H, Thomas, MG, Helgason, A, Richards, MB, Reich, D, Krause, J, Schiffels, S, Gretzinger, J, Sayer, D, Justeau, P, Altena, E, Pala, M, Dulias, K, Edwards, CJ, Jodoin, S, Lacher, L, Sabin, S, Vågene, ÅJ, Haak, W, Ebenesersdóttir, SS, Moore, KHS, Radzeviciute, R, Schmidt, K, Brace, S, Bager, MA, Patterson, N, Papac, L, Broomandkhoshbacht, N, Callan, K, Harney, É, Iliev, L, Lawson, AM, Michel, M, Stewardson, K, Zalzala, F, Rohland, N, Kappelhoff-Beckmann, S, Both, F, Winger, D, Neumann, D, Saalow, L, Krabath, S, Beckett, S, Van Twest, M, Faulkner, N, Read, C, Barton, T, Caruth, J, Hines, J, Krause-Kyora, B, Warnke, U, Schuenemann, VJ, Barnes, I, Dahlström, H, Clausen, JJ, Richardson, A, Popescu, E, Dodwell, N, Ladd, S, Phillips, T, Mortimer, R, Sayer, F, Swales, D, Stewart, A, Powlesland, D, Kenyon, R, Ladle, L, Peek, C, Grefen-Peters, S, Ponce, P, Daniels, R, Spall, C, Woolcock, J, Jones, AM, Roberts, AV, Symmons, R, Rawden, AC, Cooper, A, Bos, KI, Booth, T, Schroeder, H, Thomas, MG, Helgason, A, Richards, MB, Reich, D, Krause, J, and Schiffels, S

Abstract

The history of the British Isles and Ireland is characterized by multiple periods of major cultural change, including the influential transformation after the end of Roman rule, which precipitated shifts in language, settlement patterns and material culture1. The extent to which migration from continental Europe mediated these transitions is a matter of long-standing debate2–4. Here we study genome-wide ancient DNA from 460 medieval northwestern Europeans—including 278 individuals from England—alongside archaeological data, to infer contemporary population dynamics. We identify a substantial increase of continental northern European ancestry in early medieval England, which is closely related to the early medieval and present-day inhabitants of Germany and Denmark, implying large-scale substantial migration across the North Sea into Britain during the Early Middle Ages. As a result, the individuals who we analysed from eastern England derived up to 76% of their ancestry from the continental North Sea zone, albeit with substantial regional variation and heterogeneity within sites. We show that women with immigrant ancestry were more often furnished with grave goods than women with local ancestry, whereas men with weapons were as likely not to be of immigrant ancestry. A comparison with present-day Britain indicates that subsequent demographic events reduced the fraction of continental northern European ancestry while introducing further ancestry components into the English gene pool, including substantial southwestern European ancestry most closely related to that seen in Iron Age France5,6.

Published
2022

25. Grey wolf genomic history reveals a dual ancestry of dogs

Author

Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. -H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C., Swali, P., Conard, N. J., Carøe, C., Haile, J., Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, A. J., Willerslev, E., Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M. T. P., Shapiro, B., Larson, G., Krause, J., Dalén, L., Skoglund, P., Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. -H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C., Swali, P., Conard, N. J., Carøe, C., Haile, J., Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, A. J., Willerslev, E., Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M. T. P., Shapiro, B., Larson, G., Krause, J., Dalén, L., and Skoglund, P.

Abstract

The grey wolf (Canis lupus) was the first species to give rise to a domestic population, and they remained widespread throughout the last Ice Age when many other large mammal species went extinct. Little is known, however, about the history and possible extinction of past wolf populations or when and where the wolf progenitors of the present-day dog lineage (Canis familiaris) lived1–8. Here we analysed 72 ancient wolf genomes spanning the last 100,000 years from Europe, Siberia and North America. We found that wolf populations were highly connected throughout the Late Pleistocene, with levels of differentiation an order of magnitude lower than they are today. This population connectivity allowed us to detect natural selection across the time series, including rapid fixation of mutations in the gene IFT88 40,000–30,000 years ago. We show that dogs are overall more closely related to ancient wolves from eastern Eurasia than to those from western Eurasia, suggesting a domestication process in the east. However, we also found that dogs in the Near East and Africa derive up to half of their ancestry from a distinct population related to modern southwest Eurasian wolves, reflecting either an independent domestication process or admixture from local wolves. None of the analysed ancient wolf genomes is a direct match for either of these dog ancestries, meaning that the exact progenitor populations remain to be located. © 2022, The Author(s).

Published
2022

26. IMA genome‑F17 : Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina.

Author

Wingfield, BD, Berger, DK, Coetzee, MPA, Duong, TA, Martin, A, Pham, NQ, van den Berg, N, Wilken, PM, Arun-Chinnappa, KS, Barnes, I, Buthelezi, S, Dahanayaka, BA, Durán, A, Engelbrecht, J, Feurtey, A, Fourie, A, Fourie, G, Hartley, J, Kabwe, ENK, Maphosa, M, Narh Mensah, DL, Nsibo, DL, Potgieter, L, Poudel, B, Stukenbrock, EH, Thomas, C, Vaghefi, N, Welgemoed, T, Wingfield, MJ, Wingfield, BD, Berger, DK, Coetzee, MPA, Duong, TA, Martin, A, Pham, NQ, van den Berg, N, Wilken, PM, Arun-Chinnappa, KS, Barnes, I, Buthelezi, S, Dahanayaka, BA, Durán, A, Engelbrecht, J, Feurtey, A, Fourie, A, Fourie, G, Hartley, J, Kabwe, ENK, Maphosa, M, Narh Mensah, DL, Nsibo, DL, Potgieter, L, Poudel, B, Stukenbrock, EH, Thomas, C, Vaghefi, N, Welgemoed, T, and Wingfield, MJ

Published
2022

31. OH Initiated Oxidation of VOC under Variable NOx Conditions

Author

Becker, K.-H., Barnes, I., Bierbach, A., Brockmann, K. J., Kirchner, F., Klotz, B., Libuda, H. G., Mayer-Figge, A., Mönninghoff, S., Ruppert, L., Thomas, W., Wiesen, E., Wirtz, K., Zabel, F., Borrell, Peter, editor, Borrell, Patricia M., editor, Cvitaš, Tomislav, editor, Kelly, Kerry, editor, Seiler, Wolfgang, editor, and Le Bras, Georges, editor

Published
1997
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47. Social isolation and risk of heart disease and stroke: two large UK prospective studies

Author

Smith, R, Barnes, I, Green, J, Reeves, G, Beral, V, and Floud, S

Abstract

Background: Social isolation has been associated with increased risks of coronary heart disease (CHD) and stroke. It is unclear, however, whether the associations differ between fatal and non-fatal events or by the type of isolation (living alone or having few social contacts). We examined these associations in two large UK prospective studies. Methods: Overall 481,946 Million Women Study and 456,612 UK Biobank participants without prior CHD or stroke were followed by electronic-linkage to national hospital and death records. Cox regression yielded adjusted risk ratios (RRs) for first CHD and stroke (separately for deaths without prior hospital admission and for hospital admission as the first event) by three levels of social isolation (based on living alone, contact with family/friends, and group participation). Results: In the two studies combined, there were 42,402 first CHD and 19,999 first stroke events during 7 (SD=2) years follow-up/participant. Social isolation showed little, if any, association with hospital admissions as the first CHD or stroke events. Risks were substantially elevated, however, in the most versus least isolated group if the first event was death without prior hospital admission: RR=1.86 (95% CI 1.63-2.12) for CHD and RR=1.91 (95% CI 1.48-2.46) for stroke. For CHD or stroke death as the first event, RRs were significantly greater (p=0.002) for those living alone versus not (RR=1.60, 95% CI 1.46-1.75) than for those with few versus more social contacts (1.27, 95% CI 1.16-1.38). Results did not differ between studies, or by self-rated health. Conclusion: Social isolation appears to have little direct effect on the risk of developing a first non-fatal CHD or stroke. By contrast, isolation substantially increases the risk that the first such event is fatal, particularly among those living alone, perhaps because of the lack of immediate help in responding to an acute CHD or acute stroke.

Published
2021

48. Million-year-old DNA sheds light on the genomic history of mammoths

Author

van der Valk, T, Pecnerova, P, Diez-del-Molino, D, Bergstrom, A, Oppenheimer, J, Hartmann, S, Xenikoudakis, G, Thomas, J A, Dehasque, M, Saglican, E, Fidan, F R, Barnes, I, Liu, S L, Somel, M, Heintzman, P D, Nikolskiy, P, Shapiro, B, Skoglund, P, Hofreiter, M, Lister, A M, Gotherstrom, A, Dalen, L, van der Valk, T, Pecnerova, P, Diez-del-Molino, D, Bergstrom, A, Oppenheimer, J, Hartmann, S, Xenikoudakis, G, Thomas, J A, Dehasque, M, Saglican, E, Fidan, F R, Barnes, I, Liu, S L, Somel, M, Heintzman, P D, Nikolskiy, P, Shapiro, B, Skoglund, P, Hofreiter, M, Lister, A M, Gotherstrom, A, and Dalen, L

Published
2021
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49. Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex

Author

Geiser, D. M., Al-Hatmi, A., Aoki, T., Arie, T., Balmas, V., Barnes, I., Bergstrom, G. C, Bhattacharyya, M. K. K., Blomquist, C. L., Bowden, R., Brankovics, B., Guarro, J., Ward, T., Wickes, B., Everts, K. L., Wiederhold, N. P., Wingfield, M. J., Wood, A. K. M., Xu, J. R., Carrillo, J. D., Yang, X. B., Scauflaire, J., Yli-Matilla, T., Gugino, B., Yun, S. H., Zakaria, L., Zhang, H., Fernández-Pavía, S. P., Zhang, N., Zhang, S., Zhang, X., Chang, H. X., Kim, H., Chen, C. Y., Chen, W., Gutiérrez, S., Chilvers, M. I., Chulze, S. N., Coleman, J. J., Cuomo, C. A., da Silva, G. F., de Beer, Z. W., de Hoog, G. S., Kistler, H. C., Del Castillo-Múnera, J., Del Ponte, E., Dieguez-Uribeondo, Javier, Hammond-Kosack, K., Di Pietro, A., Edel-Hermann, V., Elmer, W. H., Foroud, N. A., Fourie, G., Frandsen, R. J. N., Nucci, M., Freeman, S., Munaut, F., Freitag, Michael, Frenkel, O., Harris, L. J., Fuller, K. K., Gagkaeva, T., Gardiner, D. M., Glenn, A. E., Gold, S., Kuldau, G. A., Gordon, T., Gregory, N. F., Gryzenhout, M., Homa, M., Hong, C. F., Hornok, L., Huang, J. W., Burgess, L. W., Ilkit, M., Nicholson, P., Kulik, T., Jacobs, A., Jacobs, K., Jiang, C., Jiménez-Gasco, M. Mar, Kang, S., Kasson, M. T., Kazan, K., Kennell, J. C., Kurzai, O., Laraba, I., Laurence, M. H., Lee, T. Y., Eskalen, A., Lee, Y. W., Schmale, D. III., Lee, Y. H., Leslie, J. F., Liew, E. C. Y., O'Donnell, K., Lofton, L. W., Logrieco, A., López-Berges, M. S., Luque, A. G., Tortorano, A. M., Lysøe, E., Ma, L. J., Short, D. P., Marra, R. E., Martin, Frank N., May, S. R., McCormick, S., Pasquali, M., McGee, C. T., Meis, J. F., Urban, M., Migheli, Q., Mohamed Nor, N. M. I., Monod, M., Šišic, A., Moretti, A., Mostert, D., Mulé, G., Pfenning, L. H., Prigitano, A., Proctor, R., Busman, M., Ranque, S., Brown, D. W., Rehner, S., Rep, M., Smith, J., Rodríguez-Alvarado, G., Rose, L. J., Roth, M. G., Ruiz-Roldán, C., Saleh, A. A., Vaillancourt, L. J., Salleh, B., Sang, H., Scandiani, M., Smyth, C. W., Son, H., Spahr, E., Stajich, Jason E., Epstein, L., Steenkamp, Emma, Bushley, K., Vallad, G. E., Steinberg, C., Subramaniam, R., Suga, H., Summerell, B. A., Susca, A., Swett, C. L., Toomajian, C., Torres-Cruz, T. J., van der Lee, T., Vanderpool, D., van Diepeningen, A. D., Vaughan, M., Munkvold, G. P., Venter, E., Esposto, M. C., Vermeulen, M., Verweij, P. E., Viljoen, A., Cano-Lira, J. F., Waalwijk, C., Wallace, E. C., Walther, G., Wang, J., Geiser, D. M., Al-Hatmi, A., Aoki, T., Arie, T., Balmas, V., Barnes, I., Bergstrom, G. C, Bhattacharyya, M. K. K., Blomquist, C. L., Bowden, R., Brankovics, B., Guarro, J., Ward, T., Wickes, B., Everts, K. L., Wiederhold, N. P., Wingfield, M. J., Wood, A. K. M., Xu, J. R., Carrillo, J. D., Yang, X. B., Scauflaire, J., Yli-Matilla, T., Gugino, B., Yun, S. H., Zakaria, L., Zhang, H., Fernández-Pavía, S. P., Zhang, N., Zhang, S., Zhang, X., Chang, H. X., Kim, H., Chen, C. Y., Chen, W., Gutiérrez, S., Chilvers, M. I., Chulze, S. N., Coleman, J. J., Cuomo, C. A., da Silva, G. F., de Beer, Z. W., de Hoog, G. S., Kistler, H. C., Del Castillo-Múnera, J., Del Ponte, E., Dieguez-Uribeondo, Javier, Hammond-Kosack, K., Di Pietro, A., Edel-Hermann, V., Elmer, W. H., Foroud, N. A., Fourie, G., Frandsen, R. J. N., Nucci, M., Freeman, S., Munaut, F., Freitag, Michael, Frenkel, O., Harris, L. J., Fuller, K. K., Gagkaeva, T., Gardiner, D. M., Glenn, A. E., Gold, S., Kuldau, G. A., Gordon, T., Gregory, N. F., Gryzenhout, M., Homa, M., Hong, C. F., Hornok, L., Huang, J. W., Burgess, L. W., Ilkit, M., Nicholson, P., Kulik, T., Jacobs, A., Jacobs, K., Jiang, C., Jiménez-Gasco, M. Mar, Kang, S., Kasson, M. T., Kazan, K., Kennell, J. C., Kurzai, O., Laraba, I., Laurence, M. H., Lee, T. Y., Eskalen, A., Lee, Y. W., Schmale, D. III., Lee, Y. H., Leslie, J. F., Liew, E. C. Y., O'Donnell, K., Lofton, L. W., Logrieco, A., López-Berges, M. S., Luque, A. G., Tortorano, A. M., Lysøe, E., Ma, L. J., Short, D. P., Marra, R. E., Martin, Frank N., May, S. R., McCormick, S., Pasquali, M., McGee, C. T., Meis, J. F., Urban, M., Migheli, Q., Mohamed Nor, N. M. I., Monod, M., Šišic, A., Moretti, A., Mostert, D., Mulé, G., Pfenning, L. H., Prigitano, A., Proctor, R., Busman, M., Ranque, S., Brown, D. W., Rehner, S., Rep, M., Smith, J., Rodríguez-Alvarado, G., Rose, L. J., Roth, M. G., Ruiz-Roldán, C., Saleh, A. A., Vaillancourt, L. J., Salleh, B., Sang, H., Scandiani, M., Smyth, C. W., Son, H., Spahr, E., Stajich, Jason E., Epstein, L., Steenkamp, Emma, Bushley, K., Vallad, G. E., Steinberg, C., Subramaniam, R., Suga, H., Summerell, B. A., Susca, A., Swett, C. L., Toomajian, C., Torres-Cruz, T. J., van der Lee, T., Vanderpool, D., van Diepeningen, A. D., Vaughan, M., Munkvold, G. P., Venter, E., Esposto, M. C., Vermeulen, M., Verweij, P. E., Viljoen, A., Cano-Lira, J. F., Waalwijk, C., Wallace, E. C., Walther, G., and Wang, J.

Abstract

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user¿s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available

Published
2021

50. Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex

Author

Universitat Rovira i Virgili, Geiser DM; Al-Hatmi AMS; Aoki T; Arie T; Balmas V; Barnes I; Bergstrom GC; Bhattacharyya MK; Blomquist CL; Bowden RL; Brankovics B; Brown DW; Burgess LW; Bushley K; Busman M; Cano-Lira JF; Carrillo JD; Chang HX; Chen CY; Chen W; Chilvers M; Chulze S; Coleman JJ; Cuomo CA; Wilhelm de Beer Z; Sybren de Hoog G; Castillo-Munera JD; Del Ponte EM; Dieguez-Uribeondo J; Pietro AD; Edel-Hermann V; Elmer WH; Epstein L; Eskalen A; Esposto MC; Everts KL; Fernandez-Pavıa SP; da Silva GF; Foroud NA; Fourie G; Frandsen RJN; Freeman S; Freitag M; Frenkel O; Fuller KK; Gagkaeva T; Gardiner DM; Glenn AE; Gold SE; Gordon TR; Gregory NF; Gryzenhout M; Guarro J; Gugino BK; Gutierrez S; Hammond-Kosack KE; Harris LJ; Homa M; Hong CF; Hornok L; Huang JW; Ilkit M; Jacobs A; Jacobs K; Jiang C; del Mar Jimenez-Gasco M; Kang S; Kasson MT; Kazan K; Kennell JC; Kim HS; Corby Kistler H; Kuldau GA; Kulik T; Kurzai O; Laraba I; Laurence MH; Lee T; Lee YW; Lee YH; Leslie JF; Liew ECY; Lofton LW; Logrieco AF; Lopez-Berges MS; Luque AG; Lysøe E; Ma LJ; Marra RE; Martin FN; May SR; McCormick SP; McGee C; Meis JF; Migheli Q; Mohamed Nor NMI; Monod M; Moretti A; Mostert D; Mule G, Universitat Rovira i Virgili, and Geiser DM; Al-Hatmi AMS; Aoki T; Arie T; Balmas V; Barnes I; Bergstrom GC; Bhattacharyya MK; Blomquist CL; Bowden RL; Brankovics B; Brown DW; Burgess LW; Bushley K; Busman M; Cano-Lira JF; Carrillo JD; Chang HX; Chen CY; Chen W; Chilvers M; Chulze S; Coleman JJ; Cuomo CA; Wilhelm de Beer Z; Sybren de Hoog G; Castillo-Munera JD; Del Ponte EM; Dieguez-Uribeondo J; Pietro AD; Edel-Hermann V; Elmer WH; Epstein L; Eskalen A; Esposto MC; Everts KL; Fernandez-Pavıa SP; da Silva GF; Foroud NA; Fourie G; Frandsen RJN; Freeman S; Freitag M; Frenkel O; Fuller KK; Gagkaeva T; Gardiner DM; Glenn AE; Gold SE; Gordon TR; Gregory NF; Gryzenhout M; Guarro J; Gugino BK; Gutierrez S; Hammond-Kosack KE; Harris LJ; Homa M; Hong CF; Hornok L; Huang JW; Ilkit M; Jacobs A; Jacobs K; Jiang C; del Mar Jimenez-Gasco M; Kang S; Kasson MT; Kazan K; Kennell JC; Kim HS; Corby Kistler H; Kuldau GA; Kulik T; Kurzai O; Laraba I; Laurence MH; Lee T; Lee YW; Lee YH; Leslie JF; Liew ECY; Lofton LW; Logrieco AF; Lopez-Berges MS; Luque AG; Lysøe E; Ma LJ; Marra RE; Martin FN; May SR; McCormick SP; McGee C; Meis JF; Migheli Q; Mohamed Nor NMI; Monod M; Moretti A; Mostert D; Mule G

Abstract

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

Published
2021

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