31 results on '"Barbara C. Sorkin"'
Search Results
2. Analytical Challenges and Metrological Approaches to Ensuring Dietary Supplement Quality: International Perspectives
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Alessandra Durazzo, Barbara C. Sorkin, Massimo Lucarini, Pavel A. Gusev, Adam J. Kuszak, Cindy Crawford, Courtney Boyd, Patricia A. Deuster, Leila G. Saldanha, Bill J. Gurley, Pamela R. Pehrsson, James M. Harnly, Aida Turrini, Karen W. Andrews, Andrea T. Lindsey, Michael Heinrich, and Johanna T. Dwyer
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dietary supplements ,food supplements ,analytical methodologies ,metrological approaches ,data management ,infrastructures ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The increased utilization of metrology resources and expanded application of its’ approaches in the development of internationally agreed upon measurements can lay the basis for regulatory harmonization, support reproducible research, and advance scientific understanding, especially of dietary supplements and herbal medicines. Yet, metrology is often underappreciated and underutilized in dealing with the many challenges presented by these chemically complex preparations. This article discusses the utility of applying rigorous analytical techniques and adopting metrological principles more widely in studying dietary supplement products and ingredients, particularly medicinal plants and other botanicals. An assessment of current and emerging dietary supplement characterization methods is provided, including targeted and non-targeted techniques, as well as data analysis and evaluation approaches, with a focus on chemometrics, toxicity, dosage form performance, and data management. Quality assessment, statistical methods, and optimized methods for data management are also discussed. Case studies provide examples of applying metrological principles in thorough analytical characterization of supplement composition to clarify their health effects. A new frontier for metrology in dietary supplement science is described, including opportunities to improve methods for analysis and data management, development of relevant standards and good practices, and communication of these developments to researchers and analysts, as well as to regulatory and policy decision makers in the public and private sectors. The promotion of closer interactions between analytical, clinical, and pharmaceutical scientists who are involved in research and product development with metrologists who develop standards and methodological guidelines is critical to advance research on dietary supplement characterization and health effects.
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- 2022
- Full Text
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3. Improving Natural Product Research Translation: from Source to Clinical Trial
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Jacqueline M. Stephens, Barbara C. Sorkin, Mahtab Jafari, Paula N. Brown, Naomi K. Fukagawa, D. Craig Hopp, Mario G. Ferruzzi, Kathleen R. Pritchett-Corning, Jeffrey Paul, Hervé Tiriac, Daniel Lakens, Bruce Barrett, Floyd H. Chilton, Sara K. Quinney, Dan Xi, Barbara Rehermann, John B. MacMillan, Freddie Ann Hoffman, Nisha S. Sipes, David O. Meltzer, Christopher S. Coffey, Adam J. Kuszak, Frederic D. Bushman, Kenneth D.R. Setchell, D. Lansing Taylor, Gregory Bloss, Giovanna Zappalà, Marco Pahor, Michael A. Walters, Mairead Kiely, Steven J. Casper, Guido F. Pauli, and Human Technology Interaction
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0301 basic medicine ,Prioritization ,Predictive validity ,medicine.medical_specialty ,Biochemistry & Molecular Biology ,Biomedical ,Computer science ,Physiology ,Medical Physiology ,Drug Evaluation, Preclinical ,Ethnobotany ,SDG 3 – Goede gezondheid en welzijn ,Biochemistry ,Article ,Value of information ,dietary supplements ,model systems ,Translational Research, Biomedical ,03 medical and health sciences ,0302 clinical medicine ,rigor and replicability ,SDG 3 - Good Health and Well-being ,Clinical Research ,Translational Research ,Complementary and Integrative Health ,Genetics ,medicine ,Animals ,Humans ,clinical predictive validity ,Translational Medical Research ,Molecular Biology ,Biological Products ,Public health ,Preclinical ,value of information ,Clinical trial ,030104 developmental biology ,Good Health and Well Being ,Risk analysis (engineering) ,Drug Evaluation ,Research questions ,Biochemistry and Cell Biology ,030217 neurology & neurosurgery ,Biotechnology - Abstract
While great interest in health effects of natural product (NP) including dietary supplements and foods persists, promising preclinical NP research is not consistently translating into actionable clinical trial (CT) outcomes. Generally considered the gold standard for assessing safety and efficacy, CTs, especially phase III CTs, are costly and require rigorous planning to optimize the value of the information obtained. More effective bridging from NP research to CT was the goal of a September,2018transdisciplinaryworkshop. Participants emphasized that replicability and likelihood of successful translation depend on rigor in experimental design, interpretation, and reporting across the continuum of NP research. Discussions spanned good practices for NP characterization and quality control; use and interpretation of models (computational through in vivo) with strong clinical predictive validity; controls for experimental artefacts, especially for in vitro interrogation of bioactivity and mechanisms of action; rigorous assessment and interpretation of prior research; transparency in all reporting; and prioritization of research questions. Natural product clinical trials prioritized based on rigorous, convergent supporting data and current public health needs are most likely to be informative and ultimately affect public health. Thoughtful, coordinated implementation of these practices should enhance the knowledge gained from future NP research.
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- 2019
4. The Dietary Supplement Label Database: Recent Developments and Applications
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Leila G. Saldanha, Pamela R. Pehrsson, Pavel A. Gusev, Abby G. Ershow, Kirsten A Herrick, Regan L Bailey, Constance J. Hardy, Rebecca B. Costello, Barbara C. Sorkin, Karen W. Andrews, Nancy Potischman, Johanna T. Dwyer, Luisa Rios-Avila, James M. Harnly, Jaime J Gahche, Cindy D. Davis, Joseph M. Betz, Adam J. Kuszak, Richard A Bailen, Florence Chang, Nancy J. Emenaker, and Jeanne Goshorn
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0301 basic medicine ,Databases, Factual ,Computer science ,Interface (Java) ,Information Dissemination ,Medicine (miscellaneous) ,Product Labeling ,computer.software_genre ,Article ,03 medical and health sciences ,Resource (project management) ,Humans ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Database ,business.industry ,Commerce ,Usability ,United States ,Product (business) ,Dietary Supplements ,User interface ,business ,computer ,Mobile device - Abstract
Objective To describe the history, key features, recent enhancements, and common applications of the Dietary Supplement Label Database (DSLD). Background and history Although many Americans use dietary supplements, databases of dietary supplements sold in the United States have not been widely available. The DSLD, an easily accessible public-use database was created in 2008 to provide information on dietary supplement composition for use by researchers and consumers. Rationale Accessing current information easily and quickly is crucial for documenting exposures to dietary supplements because they contain nutrients and other bioactive ingredients that may have beneficial or adverse effects on human health. This manuscript details recent developments with the DSLD to achieve this goal and provides examples of how the DSLD has been used. Recent developments With periodic updates to track changes in product composition and capture new products entering the market, the DSLD currently contains more than 71,000 dietary supplement labels. Following usability testing with consumer and researcher user groups completed in 2016, improvements to the DSLD interface were made. As of 2017, both a desktop and mobile device version are now available. Since its inception in 2008, the use of the DSLD has included research, exposure monitoring, and other purposes by users in the public and private sectors. Future directions Further refinement of the user interface and search features to facilitate ease of use for stakeholders is planned. Conclusions The DSLD can be used to track changes in product composition and capture new products entering the market. With over 71,000 DS labels it is a unique resource that policymakers, researchers, clinicians, and consumers may find valuable for multiple applications.
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- 2018
5. Improving Natural Product Research Translation: from Source to Clinical Trial
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Barbara C Sorkin, Adam J Kuszak, Naomi K Fukagawa, Freddie Ann Hoffman, Mahtab Jafari, Bruce Barrett, Paula N. Brown, Frederic D. Bushman, Steven Casper, Floyd H. Chilton, Christopher S. Coffey, Mario G. Ferruzzi, D. Craig Hopp, Mairead Kiely, Daniel Lakens, John B. MacMillan, David Meltzer, Marco Pahor, Jeffrey Paul, Kathleen Pritchett-Corning, Sara Quinney, Barbara Rehermann, Kenneth D.R. Setchell, Nisha S. Sipes, Jacqueline M. Stephens, D. Lansing Taylor, Herve Tiriac, Michael Walters, Dan Xi, Giovanna Zappala, and Guido Pauli
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NutriXiv|Medicine and Health Sciences ,bepress|Medicine and Health Sciences ,NutriXiv|Medicine and Health Sciences|Public Health ,bepress|Medicine and Health Sciences|Public Health - Abstract
While great interest in health effects of natural product (NP) foods and dietary supplements persists, promising preclinical NP research is not consistently translating into actionable clinical trial (CT) outcomes. Generally considered the gold standard for assessing safety and efficacy, CTs,especially Phase III CTs, are costly and require rigorous planning to optimize the value of the information obtained. More effective bridging from NP research to CT was the goal of a September, 2018 transdisciplinary workshop. Participants emphasized that replicability and likelihood of successful translation depend on rigor in experimental design, interpretation, and reporting across the continuum of NP research. Discussions spanned good practices for: NPcharacterization and quality control; use and interpretation of models (computational through in vivo) with strong clinical predictive validity; controls for experimental artefacts, especially for in vitro interrogation of bioactivity and mechanisms of action; rigorous assessment and interpretation of prior research; transparency in all reporting; and prioritization of research questions. NPCTsprioritized based on rigorous, convergent supporting data and current public health needs are most likely to be informative and ultimately affect public health. Thoughtful, coordinated implementation of these practices should enhance the knowledge gained from future NP research.
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- 2019
6. Enhancing Natural Product Clinical Trials (P13-037-19)
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Jeffrey Paul, Gregory Bloss, Mario G. Ferruzzi, Guido F. Pauli, Mairead Kiely, Daniel Lakens, Adam J. Kuszak, Nisha S. Sipes, Naomi K. Fukagawa, David O. Meltzer, Bruce Barrett, and Barbara C. Sorkin
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medicine.medical_specialty ,Nutrition and Dietetics ,Natural product ,Methods and Protocols ,Medicine (miscellaneous) ,Tissue membrane ,Biology ,Health outcomes ,Clinical trial ,chemistry.chemical_compound ,chemistry ,Academia (organization) ,medicine ,Intensive care medicine ,Food Science ,Biological availability - Abstract
OBJECTIVES: To discuss good practices and criteria for optimal design and interpretation of pre-clinical and clinical natural product (NP) research in order to increase benefit from our investment in NP clinical trials (CT). Background: Large, randomized, controlled CT often fail to reject the null hypothesis or show rigorous evidence of benefit. This includes recent large, NIH-supported CT of nutrients such as vitamin D and selenium, and of botanical dietary supplements. Negative and positive outcomes may be equally important for public health, but because large CT cost at least $20 M each, plus opportunity costs, it is important that CT designs maximize the yield of actionable information regardless of outcome. METHODS: Experts and stakeholders from academia, government and the private sector collaboratively developed a broadly attended workshop in which good practices to enhance rigor, reproducibility and translational relevance were discussed. RESULTS: N/A. CONCLUSIONS: Critical issues in CT design include product identity, reproducibility and pharmacology (where feasible), power to test a primary outcome significant to consumers, and placebo controls. When basing a CT on traditional use or prior in vitro or in vivo studies, similarity of product (e.g., source identity, methods of preparation, form and intake), health outcome and population (e.g., age, sex, genetics, diet and environment), require careful consideration. Appropriate controls for known types of in vitro assay interference (e.g., aggregation, membrane disruption, protein denaturation) are imperative. Compounds with limited bioavailability, or activity only at concentrations above those achievable by ingestion, are likely poor candidates for dietary CT. Translational validity of model systems should be carefully assessed. Appropriate analyses (e.g., p-curve and meta-regression methods) should be used to obtain bias-corrected effect size estimates, and to identify research areas where the evidence base may be weaker than published findings suggest. Finally, CT prioritization should consider expected impact on public health, and whether known NP causal mechanisms of action are such that useful information, e.g., on product bioavailability or biological activity, are generated even if the completed CT fails to reject the null hypothesis. FUNDING SOURCES: NIH, FDA, USDA.
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- 2019
7. The Challenge of Reproducibility and Accuracy in Nutrition Research: Resources and Pitfalls
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Adam J. Kuszak, D. Craig Hopp, Barbara C. Sorkin, John S. Williamson, and Joseph M. Betz
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0301 basic medicine ,Nutrition and Dietetics ,business.industry ,Environmental resource management ,Comparability ,Medicine (miscellaneous) ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Risk analysis (engineering) ,Data accuracy ,Medicine ,030212 general & internal medicine ,Nutrition research ,Nutritional science ,business ,Food Science - Abstract
Inconsistent and contradictory results from nutrition studies conducted by different investigators continue to emerge, in part because of the inherent variability of natural products, as well as the unknown and therefore uncontrolled variables in study populations and experimental designs. Given these challenges inherent in nutrition research, it is critical for the progress of the field that researchers strive to minimize variability within studies and enhance comparability between studies by optimizing the characterization, control, and reporting of products, reagents, and model systems used, as well as the rigor and reporting of experimental designs, protocols, and data analysis. Here we describe some recent developments relevant to research on plant-derived products used in nutrition research, highlight some resources for optimizing the characterization and reporting of research using these products, and describe some of the pitfalls that may be avoided by adherence to these recommendations.
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- 2016
8. Application of P-Curve Analysis to Dietary Supplement Clinical Trials: Case Study of Trials of Curcumin Products for Arthritis
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Barbara C. Sorkin and Jaime J Gahche
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medicine.medical_specialty ,Nutrition and Dietetics ,biology ,business.industry ,Dietary supplement ,Curve analysis ,Medicine (miscellaneous) ,Arthritis ,Osteoarthritis ,biology.organism_classification ,medicine.disease ,Clinical trial ,chemistry.chemical_compound ,chemistry ,Internal medicine ,Rheumatoid arthritis ,Methods ,medicine ,Curcumin ,Curcuma ,business ,Food Science - Abstract
OBJECTIVES: Turmeric root (Curcuma longa) and its constituents, the curcuminoids, are widely reported to have anti-inflammatory effects. A recent meta-analysis found that 8 studies that met the review criteria “provide scientific evidence that supports the efficacy of turmeric extract…in the treatment of arthritis” but notes the small number of trials and “the methodological quality of the studies were not sufficient to draw definitive conclusions.” The objective of this project was to apply p-curve analysis to these trials, to assess the likelihood of biased data reporting or p-hacking, a common source of false positive reports. METHODS: PubMed was searched for English language reports of randomized, placebo-controlled clinical trials of turmeric- or curcuminoid-containing products for osteoarthritis or rheumatoid arthritis (henceforth arthritis) pain or other inflammatory conditions in arthritis patients. Trials in which curcumin was combined with other supplements or drugs were included. Data for primary outcomes from the retrieved papers were used to generate a p-curve. Where multiple primary outcomes were reported, or no primary outcome was specified, results for a well-validated arthritis scale were used for the analysis. RESULTS: Twelve randomized, double-blind, placebo-controlled clinical trials of curcumin for arthritis were identified and analyzed. Dates of publication ranged from 1991 to 2019, group sizes ranged from 12 to 80, doses, where specified, ranged from 180 to 1500 mg curcuminoids or turmeric extract per day, and treatment duration ranged from 6 to 36 weeks. The p-curve analysis did not reveal a left-skewed curve which would be diagnostic of p-hacking (more p-values concentrated around .04 and fewer low values) and thus does not suggest that p-hacking is present. CONCLUSIONS: Inspection of the distribution of p values for placebo-controlled clinical trials of curcumin-containing products for osteo- and rheumatoid arthritis in the PubMed database do not show evidence of extensive p-hacking. FUNDING SOURCES: NIH Office of Dietary Supplements.
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- 2020
9. Toward FAIRness and a User-Friendly Repository for Supporting NMR Data
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D. Craig Hopp, Joseph M. Betz, and Barbara C. Sorkin
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User Friendly ,Magnetic Resonance Spectroscopy ,Database ,Chemistry ,Organic Chemistry ,MEDLINE ,computer.software_genre ,Magnetic Resonance Imaging ,Biochemistry ,Nmr data ,Article ,World Wide Web ,Physical and Theoretical Chemistry ,computer - Published
- 2020
10. Caffeine-Containing Energy Drinks: Beginning to Address the Gaps in What We Know
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Paul M. Coates and Barbara C. Sorkin
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Nutrition and Dietetics ,business.industry ,Energy (esotericism) ,Medicine (miscellaneous) ,Institute of medicine ,Critical research ,food.food ,chemistry.chemical_compound ,food ,chemistry ,Yerba-mate ,Environmental health ,Experimental biology ,Medicine ,Food science ,Caffeine ,business ,Food Science - Abstract
Energy drinks are relatively new to the United States but are the fastest growing segment of the beverage market. Humans have a long history of consuming caffeine in traditional beverages, such as cocoa, coffee, tea, and yerba mate, but 2 workshops held at the Institute of Medicine (http://www.iom.edu/Activities/Nutrition/PotentialHazardsCaffeineSupplements/2013-AUG-05.aspx) and the NIH (http://ods.od.nih.gov/News/EnergyDrinksWorkshop2013.aspx) in 2013 highlighted many critical gaps in understanding the biologic and behavioral effects of the mixtures of caffeine, vitamins, herbs, sugar or other sweeteners, and other ingredients that typify caffeine-containing energy drinks (CCEDs). For example, different surveys over the same 2010–2012 timeframe report discrepant prevalence of CCED use by teenagers, ranging from 10.3% in 13–17 y olds to >30% of those in grades 10 and 12. Understanding of functional interactions between CCED ingredients, drivers of use, and biologic and behavioral effects is limited. The 4 speakers in the Experimental Biology 2014 symposium titled “Energy Drinks: Current Knowledge and Critical Research Gaps” described recent progress by their groups in extending our understanding of prevalence of CCED use, sources of caffeine in the United States, drivers of CCED use, and behavioral correlations and effects of CCEDs, including effects on attractiveness of both alcoholic and non-alcoholic beverages.
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- 2014
11. Executive Summary Report
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Harold E Seifried, Barbara C. Sorkin, Rebecca B. Costello, and Darrell E Anderson
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Toxicology ,Nutrition and Dietetics ,Psychotherapist ,Executive summary ,business.industry ,cons ,Medicine (miscellaneous) ,Neoplasms therapy ,Medicine ,Oxidation reduction ,business - Published
- 2004
12. Executive summary of NIH workshop on the Use and Biology of Energy Drinks: Current Knowledge and Critical Gaps
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Padma Maruvada, Lynne Haverkos, Ellen D. Witt, Carol J. Haggans, Patricia A. Deuster, Kathryn M. Camp, Barbara C. Sorkin, and Paul M. Coates
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Consumption (economics) ,Nutrition and Dietetics ,Executive summary ,business.industry ,Energy (esotericism) ,Medicine (miscellaneous) ,Biology ,B vitamins ,Alertness ,Mood ,Caffeine ,Medicine ,Energy Drinks ,Humans ,Supplement Article ,Food science ,Marketing ,business - Abstract
Sales of energy drinks in the United States reached $12.5 billion in 2012. Emergency department visits related to consumption of these products have increased sharply, and while these numbers remain small relative to product sales, they raise important questions regarding biological and behavioral effects. Although some common ingredients of energy drinks have been extensively studied (e.g., caffeine, B vitamins, sugars, inositol), data on other ingredients (e.g., taurine) are limited. Summarized here are data presented elsewhere in this issue on the prevalence and patterns of caffeine-containing energy drink use, the effects of these products on alertness, fatigue, cognitive functions, sleep, mood, homeostasis, as well as on exercise physiology and metabolism, and the biological mechanisms mediating the observed effects. There are substantial data on the effects of some energy drink ingredients, such as caffeine and sugars, on many of these outcomes; however, even for these ingredients many controversies and gaps remain, and data on other ingredients in caffeine-containing energy drinks, and on ingredient interactions, are sparse. This summary concludes with a discussion of critical gaps in the data and potential next steps.
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- 2014
13. The Cadherin-Catenin Complex Is Expressed Alternately with the Adenomatous Polyposis Coli Protein During Rat Incisor Amelogenesis
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Mark Y. Wang, Karen L. Albergo, Barbara C. Sorkin, Justine M. Dobeck, and Ziedonis Skobe
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0301 basic medicine ,Delta Catenin ,medicine.medical_specialty ,Histology ,Blotting, Western ,Plakoglobin ,Biology ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,Amelogenesis ,Internal medicine ,medicine ,Animals ,Cytoskeleton ,beta Catenin ,Adaptor Proteins, Signal Transducing ,Cadherin ,Cell growth ,Proteins ,Catenins ,030206 dentistry ,Cadherins ,Phosphoproteins ,Immunohistochemistry ,Rats ,Cell biology ,Incisor ,Cytoskeletal Proteins ,030104 developmental biology ,Endocrinology ,Desmoplakins ,Catenin ,Trans-Activators ,gamma Catenin ,Catenin complex ,Anatomy ,Ameloblast ,Cell Adhesion Molecules ,alpha Catenin - Abstract
E-cadherin, a calcium-dependent cell-cell adhesion molecule, is expressed in highly specific spatiotemporal patterns throughout metazoan development, notably at sites of embryonic induction. E-cadherin also plays a critical role in regulating cell motility/ adhesion, cell proliferation, and apoptosis. We have used the continuously erupting rat incisor as a system for examining the expression of E-cadherin and the associated catenins [α-, β-, γ-catenin (plakoglobin) and p120ctn] during amelogenesis. Using immunhistochemical techniques, we observed expression of α-catenin and γ-catenin in ameloblasts throughout amelogenesis. In contrast, expression of E-cadherin, β-catenin, and p120ctnwas strong in presecretory, transitional, and reduced stage ameloblasts (Stages I, III, and V) but was dramatically lower in secretory and maturation stage ameloblasts (Stages II and IV). This expression alternates with the expression pattern we previously reported for the adenomatous polyposis coli protein (APC), a tumor suppressor that competes with E-cadherin for binding to β-catenin. We suggest that alternate expression of APC and the cadherin-catenin complex is critical for the alterations in cell-cell adhesion and other differentiated cellular characteristics, such as cytoskeletal alterations, that are required for the formation of enamel by ameloblasts.
- Published
- 2000
14. Tools for Assuring Data Quality in Natural Products Studies: The NIH/ODS Analytical Methods and Reference Materials Program (AMRM)
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Leila G. Saldanha, Gordon M. Cragg, Barbara C. Sorkin, Joseph M. Betz, and Paul M. Coates
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Pharmacology ,Computer science ,business.industry ,Organic Chemistry ,Pharmaceutical Science ,Natural (archaeology) ,Analytical Chemistry ,Complementary and alternative medicine ,Chemical engineering ,Data quality ,Drug Discovery ,Molecular Medicine ,Process engineering ,business - Published
- 2013
15. NIH/ODS Analytical Methods and Reference Materials (AMRM) Program: Accomplishments and Future Directions
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Paul M. Coates, Barbara C. Sorkin, Leila G. Saldanha, Gordon L Cragg, and Joseph M. Betz
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Genetics ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2013
16. The NIH/ODS Analytical Methods and Reference Materials Program: Accomplishments and Future Directions
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Joseph M. Betz, Paul M. Coates, Leila G. Saldanha, Barbara C. Sorkin, and Gordon M. Cragg
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Pharmacology ,Engineering ,Complementary and alternative medicine ,business.industry ,Organic Chemistry ,Drug Discovery ,Systems engineering ,Pharmaceutical Science ,Molecular Medicine ,Nanotechnology ,business ,Analytical Chemistry - Published
- 2013
17. Accuracy, precision and reliability in natural product analysis: mechanisms of NIH support for methods development and validation
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Barbara C. Sorkin, Paula N. Brown, Joseph M. Betz, and D. C. Hopp
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Pharmacology ,Accuracy and precision ,Complementary and alternative medicine ,Computer science ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Reliability (statistics) ,Analytical Chemistry ,Reliability engineering - Published
- 2012
18. Ginkgo biloba and risk of cancer: Secondary Analysis of the Ginkgo Evaluation of Memory (GEM) Study
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Richard L. Nahin, Barbara C. Sorkin, Lewis H. Kuller, Annette L. Fitzpatrick, and Mary L. Biggs
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Oncology ,Male ,medicine.medical_specialty ,Epidemiology ,Breast Neoplasms ,Article ,law.invention ,Prostate cancer ,Breast cancer ,Randomized controlled trial ,Double-Blind Method ,law ,Internal medicine ,Secondary analysis ,Neoplasms ,medicine ,Humans ,Pharmacology (medical) ,Aged ,biology ,Traditional medicine ,business.industry ,Ginkgo biloba ,Plant Extracts ,Ginkgo ,Cancer ,Prostatic Neoplasms ,biology.organism_classification ,medicine.disease ,Clinical trial ,Hospitalization ,Female ,business ,Colorectal Neoplasms ,Follow-Up Studies - Abstract
Evidence from in vitro and in vivo studies suggests that Ginkgo biloba has cancer chemopreventive properties, but epidemiological evidence is sparse. We analyzed cancer as a secondary endpoint in the Ginkgo Evaluation of Memory (GEM) Study, the largest randomized, double-blind, placebo-controlled clinical trial of Ginkgo supplementation to date.A total of 3069 GEM participants 75+ years of age were randomized to twice-daily doses of either 120 mg Ginkgo extract (EGb 761) or placebo and followed for a median 6.1 years. We identified hospitalizations for invasive cancer by reviewing hospital admission and discharge records for all reported hospitalizations over follow-up. Using an intention-to-treat approach, we compared the risk of cancer hospitalization between participants assigned to treatment and those assigned to placebo.During the intervention, there were 148 cancer hospitalizations in the placebo group and 162 in the EGb 761 group (Hazard ratio (HR), 1.09; 95% confidence interval (CI), 0.87-1.36; p = 0.46). Among the site-specific cancers analyzed, we observed an increased risk of breast (HR, 2.15; 95%CI, 0.97-4.80; p = 0.06) and colorectal (HR, 1.62; 95%CI, 0.92-2.87; p = 0.10) cancer, and a reduced risk of prostate cancer (HR, 0.71; 95%CI, 0.43-1.17; p = 0.18).Overall, these results do not support the hypothesis that regular use of Ginkgo biloba reduces the risk of cancer.
- Published
- 2010
19. Genes for two calcium-dependent cell adhesion molecules have similar structures and are arranged in tandem in the chicken genome
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Warren J. Gallin, Bruce A. Cunningham, Barbara C. Sorkin, and Gerald M. Edelman
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animal structures ,Transcription, Genetic ,Molecular Sequence Data ,Restriction Mapping ,Pair-rule gene ,Chick Embryo ,Biology ,Gene product ,Exon ,Gene duplication ,Gene cluster ,Animals ,Gene family ,Amino Acid Sequence ,Codon ,Gene ,Gap gene ,Genetics ,Genomic Library ,Genome ,Multidisciplinary ,Base Sequence ,Chromosome Mapping ,Exons ,Molecular biology ,Introns ,Calcium ,Cell Adhesion Molecules ,Chickens ,Research Article - Abstract
Genomic sequences immediately upstream of the translational start site for the chicken liver cell adhesion molecule (L-CAM) gene contain a second closely related gene, which, because of its location, we have designated the K-CAM gene. Less than 700 base pairs separate the presumed poly(A) site in the K-CAM gene from the translation initiation site for L-CAM. The sizes of exons 4-15 of the K-CAM gene are almost identical to those in the L-CAM gene and the exon/intron junctions occur at exactly equivalent positions in both genes. Exon 16, which includes the 3' untranslated region, is much shorter in the K-CAM gene and intron sizes and sequences are not generally conserved between the two genes. Probes from the K-CAM gene hybridized to a 3-kilobase mRNA that was present at high levels in embryonic skin, at lower levels in kidney, heart, and gizzard, and at still lower levels in brain and liver, as determined by Northern blotting. The sequence of the predicted gene product was nearly identical to that of the chicken B-cadherin cDNA, although the distribution of the K-CAM gene transcript differed from that reported for the cadherin. The proximity and identical overall structure of the K-CAM and L-CAM genes strongly suggest that they arose by gene duplication and raise the possibility that genes for other calcium-dependent CAMs may be located in clusters. Moreover, the tandem arrangement of the genes may have important implications for the regulation of their expression.
- Published
- 1991
20. Zebrafish E-cadherin: expression during early embryogenesis and regulation during brain development
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Barbara C. Sorkin, Pamela C. Yelick, Qin Liu, Andrew L. Doedens, James A. Marrs, Pamela A. Raymond, Jessica Barnett, Sherry G. Babb, and Nicole Cobb
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Mesoderm ,animal structures ,DNA, Complementary ,Embryo, Nonmammalian ,Time Factors ,Hindbrain ,Nervous System ,Fungal Proteins ,medicine ,Animals ,Tissue Distribution ,Nicotinamide-Nucleotide Adenylyltransferase ,Zebrafish ,In Situ Hybridization ,Gene Library ,Regulation of gene expression ,Fungal protein ,biology ,Cadherin ,Reverse Transcriptase Polymerase Chain Reaction ,PAX2 Transcription Factor ,Brain ,Sequence Analysis, DNA ,Zebrafish Proteins ,biology.organism_classification ,Blotting, Northern ,Cadherins ,Molecular biology ,Nucleotidyltransferases ,Gastrulation ,DNA-Binding Proteins ,medicine.anatomical_structure ,Gene Expression Regulation ,embryonic structures ,Pharyngula ,Developmental Biology ,Signal Transduction ,Transcription Factors - Abstract
Zebrafish E-cadherin (cdh1) cell adhesion molecule cDNAs were cloned. We investigated spatial and temporal expression of cdh1 during early embryogenesis. Expression was observed in blastomeres, the anterior mesoderm during gastrulation, and developing epithelial structures. In the developing nervous system, cdh1 was detected at the pharyngula stage (24 hpf) in the midbrain-hindbrain boundary (MHB). Developmental regulation of MHB formation involves wnt1 and pax2.1. wnt1 expression preceded cdh1 expression during MHB formation, and cdh1 expression in the MHB was dependent on normal development of this structure.
- Published
- 2001
21. Leukocytes infiltrating the submandibular glands of NOD mice express E-cadherin
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Barbara C. Sorkin, Valerie A. Levanos, Jennifer D Poveromo, Malin V. Jonsson, and Thomas R Esch
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Pathology ,medicine.medical_specialty ,T cell ,Lymphocyte ,T-Lymphocytes ,Immunology ,Blotting, Western ,Submandibular Gland ,Biology ,Immunophenotyping ,Mice ,Antigen ,Mice, Inbred NOD ,medicine ,Leukocytes ,Immunology and Allergy ,Animals ,CD90 ,NOD mice ,Salivary gland ,Monocyte ,Cadherins ,Submandibular gland ,Molecular biology ,Immunohistochemistry ,medicine.anatomical_structure ,Sjogren's Syndrome ,Leukocyte Common Antigens - Abstract
Sjogren's syndrome [SS] is typified by infiltration of mononuclear cells [MNC] into the salivary and lacrimal glands, although the biological role of these infiltrating cells remains unclear. We report here that E-cadherin, which mediates cell-cell adhesion and regulates differentiation, proliferation, and apoptosis of epithelial cells, is expressed ectopically by MNC in the salivary glands in the NOD mouse model of SS. Flow cytometric analysis of CD45(+)cells from NOD submandibular glands revealed that over 90% express E-cadherin. More detailed phenotypic analyses demonstrated that E-cadherin expression is high (>90%) among mature T cells (CD3(+)), B cells (CD19(+)), NK cells (DX5(+)), and monocyte/macrophages (CD11b(+)) within the infiltrates. Expression of other surface antigens, such as CD90 and CD117, above expected values suggests the presence of immature leukocytes, possibly of the T cell lineage, within the foci. We also present evidence that E-cadherin-expressing T cells in the glands do not exhibit normal proliferative responses to immobilized anti-CD3 antibody. While infiltrating MNC are not likely to be the direct cause of salivary hypofunction, the expression of E-cadherin by these cells may have implications for the progression of disease.
- Published
- 2000
22. Identification of phylogenetic footprints in primate tumor necrosis factor-alpha promoters
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F. Ellis McKenzie, Anne E. Goldfeld, Jessica Y. Leung, Barbara C. Sorkin, Edmond J. Yunis, Pedro O. Flores-Villanueva, Daniel L. Hartl, and Adele M. Uglialoro
- Subjects
Genetics ,Regulation of gene expression ,Primates ,Multidisciplinary ,Base Sequence ,Tumor Necrosis Factor-alpha ,Molecular Sequence Data ,Single-nucleotide polymorphism ,Promoter ,HLA-DR Antigens ,Biology ,Biological Sciences ,Conserved sequence ,Phylogenetics ,HLA-B Antigens ,Gene expression ,Animals ,Humans ,Promoter Regions, Genetic ,Gene ,HLA-DR Antigen ,Conserved Sequence ,Phylogeny - Abstract
The human tumor necrosis factor-alpha (TNF-alpha) gene encodes a pleiotropic cytokine that plays a critical role in basic immunologic processes. To investigate the TNF-alpha regulatory region in the primate lineage, we isolated TNF-alpha promoters from representative great apes, Old World monkeys, and New World monkeys. We demonstrate that there is a nonuniform distribution of fixed human differences in the TNF-alpha promoter. We define a "fixed human difference" as a site that is not polymorphic in humans, but which differs in at least one of the seven primate sequences examined. Furthermore, we identify two human TNF-alpha promoter single nucleotide polymorphisms that are putative ancestral polymorphisms, because each of the human polymorphic nucleotides was found at the identical site in at least one of the other primate sequences. Strikingly, the largest conserved region among the primate species, a 69-nt "phylogenetic footprint," corresponds to a region of the human TNF-alpha promoter that forms the transcriptionally active nucleoprotein-DNA complex, essential for gene regulation. By contrast, other regions of the TNF-alpha promoter, which exhibit a high density of variable sites, are nonessential for gene expression, indicating that distinct TNF-alpha promoter regions have been subjected to different evolutionary constraints depending on their function. TNF-alpha is the first case in which a promoter region dissected by functional analyses can be correlated with nucleotide polymorphism and variability in primate lineages. The results suggest that patterns of polymorphism and divergence are likely to be useful in identifying candidate regions important for gene regulation in other immune-response genes.
- Published
- 2000
23. Short chain carboxylic acids decrease human gingival keratinocyte proliferation and increase apoptosis and necrosis
- Author
-
Barbara C. Sorkin and Richard Niederman
- Subjects
Keratinocytes ,Necrosis ,Gingival and periodontal pocket ,Cell Survival ,Gingiva ,Apoptosis ,DNA Fragmentation ,Biology ,medicine ,Humans ,Barrier function ,Cells, Cultured ,Dose-Response Relationship, Drug ,Cell growth ,Sulcular epithelium ,Fatty Acids, Volatile ,Epithelium ,medicine.anatomical_structure ,Immunology ,Cancer research ,Periodontics ,medicine.symptom ,Keratinocyte ,Cell Division - Abstract
Epithelia are key barriers to infections. In periodontal disease, the gingival sulcular epithelium becomes ulcerated. In this report, we test the hypothesis that short-chain carboxylic acids (SCCA) inhibit keratinocyte proliferation, increase necrosis and apoptosis, and may thus promote ulceration. SCCA produced by bacteria are present at millimolar concentrations in the periodontal pockets of subjects with periodontal disease. SCCA concentrations are higher in subjects with severe disease than in those with mild disease, and are not detectable in healthy subjects. Cell proliferation is critical for maintenance of epithelial barrier function. All SCCA tested, when neutralized, decreased epithelial cell proliferation (as measured by 3H-thymidine incorporation) in a dose-dependent manner. We found that epithelial cell viability decreased with increasing SCCA concentrations, accounting at least partly for the decreased 3H-thymidine incorporation. For all conditions we tested, SCCA-induced apoptosis preceded and exceeded necrosis. While the molecular mechanism(s) for these effects remain to be determined, the results indicate that SCCA derived from caries- or periodontal disease-associated bacteria could alter gingival barrier function.
- Published
- 1998
24. Cadherin-mediated adhesion is required for normal growth regulation of human gingival epithelial cells
- Author
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Barbara C. Sorkin, Sridevi Kandikonda, Dolphine Oda, and Richard Niederman
- Subjects
Cell division ,Papillomavirus E7 Proteins ,Gingiva ,chemistry.chemical_element ,Calcium ,Biology ,Cell Adhesion ,Humans ,Magnesium ,Cell adhesion ,Papillomaviridae ,Edetic Acid ,Cell Line, Transformed ,Cell adhesion molecule ,Cadherin ,Cell growth ,Contact Inhibition ,Contact inhibition ,Antibodies, Monoclonal ,Epithelial Cells ,General Medicine ,Oncogene Proteins, Viral ,Cadherins ,Cell Transformation, Viral ,Cell biology ,Repressor Proteins ,chemistry ,Cell culture ,Cell Division ,Signal Transduction - Abstract
The cadherins are a family of cell membrane proteins that mediate calcium-dependent cell-cell adhesion. E-cadherin is required for the formation, differentiation, polarization and stratification of epithelia; P-cadherin is also expressed on many epithelia. We report here the first study of cadherin expression in immortalized human gingival epithelial cells (IHGK) and examine the role of cadherins in growth regulation of these cells. We found that the IHGK cells are similar to normal gingival epithelial cells in their cadherin expression and density-dependent inhibition of growth. The IHGK cells proliferate more rapidly at low calcium concentration (0.15 mM) than at physiological concentrations of calcium (1.8 mM) and magnesium (0.65 mM; Ca/Mg medium) suggesting that calcium is required for density-dependent regulation of proliferation. To evaluate the possibility that cadherin function is required for contact inhibition in these cells, we grew them in Ca/Mg medium in the presence of adhesion-blocking anti-cadherin monoclonal antibodies. At anti-E-cadherin concentrations sufficient to disrupt cell-cell adhesion, the proliferation of the IHGK cells was similar to that observed in medium containing 0.2 mM EDTA. Anti-P-cadherin had a much weaker effect on cell proliferation than anti-E-cadherin, and cells grown in medium containing both antibodies grew at intermediate rates. The increased proliferation of the IHGK cells in either low calcium medium or Ca/Mg medium containing adhesion-blocking anti-cadherin antibodies suggests that cadherin-mediated adhesion is required for density-dependent regulation of growth of these cells.
- Published
- 1996
25. Identification of the promoter and a transcriptional enhancer of the gene encoding L-CAM, a calcium-dependent cell adhesion molecule
- Author
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Frederick S. Jones, Barbara C. Sorkin, Gerald M. Edelman, and Bruce A. Cunningham
- Subjects
animal structures ,Molecular Sequence Data ,Restriction Mapping ,Enhancer RNAs ,Biology ,In Vitro Techniques ,Cell Line ,Dogs ,Enhancer trap ,Animals ,RNA, Messenger ,Enhancer ,Promoter Regions, Genetic ,Regulation of gene expression ,Reporter gene ,Multidisciplinary ,Base Sequence ,Promoter ,Molecular biology ,Introns ,Enhancer Elements, Genetic ,Gene Expression Regulation ,Regulatory sequence ,Ectopic expression ,Cell Adhesion Molecules ,Chickens ,Research Article - Abstract
L-CAM is a calcium-dependent cell adhesion molecule that is expressed in a characteristic place-dependent pattern during development. Previous studies of ectopic expression of the chicken L-CAM gene under the control of heterologous promoters in transgenic mice suggested that cis-acting sequences controlling the spatiotemporal expression patterns of L-CAM were present within the gene itself. We have now examined the L-CAM gene for sequences that control its expression and have found an enhancer within the second intron of the gene. A 2.5-kb Kpn I-EcoRI fragment from the intron acted as an enhancer of a simian virus 40 minimal promoter driving a chloramphenicol acetyltransferase (CAT) reporter gene and produced 14.0-fold induction of CAT activity in MDCK cells. To narrow down the region responsible for enhancer activity and to determine whether the enhancer could function in a cell type-specific manner, a number of smaller restriction fragments from the intron were tested for activity in two chicken cell lines, the LMH hepatoma line, which produces high levels of L-CAM, and the SL-29 fibroblast line, which produces little, if any, L-CAM. Four L-CAM enhancer plasmids containing shorter segments derived from the intron showed enhanced CAT activity levels (between 9.4- and 16.5-fold) in extracts from transfected LMH cells but not from SL-29 cells. DNA sequence analysis of the L-CAM enhancer region revealed putative binding sites for the transcription factors SP1, E2A, and AP-2. In addition, LE-9, the smallest L-CAM enhancer segment (310 bp), contained a consensus binding site for the liver-enriched POU-homeodomain transcription factor, HNF-1. Tests of upstream sequences showed that a 630-bp fragment, corresponding to nearly the entire intergenic region between L-CAM and its neighboring CAM gene, K-CAM, could function as a promoter. In combination with the L-CAM enhancer, this fragment directed cell type-specific expression of the CAT reporter gene in LMH cells at a level comparable to that observed with enhancer constructs using the simian virus 40 minimal promoter. These combined observations define a promoter and an enhancer for the chicken L-CAM gene. They raise the possibility that these cis-acting regulatory sequences may be instrumental in directing specific place-dependent expression of the L-CAM gene in the chicken.
- Published
- 1993
26. Linear organization of the liver cell adhesion molecule L-CAM
- Author
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Bruce A. Cunningham, Warren J. Gallin, Barbara C. Sorkin, Yvonne Leutzinger, and Gerald M. Edelman
- Subjects
Phosphopeptides ,Glycoside Hydrolases ,Oligosaccharides ,Peptide ,Chick Embryo ,Cell Fractionation ,Chromatography, Affinity ,Endoglycosidase H ,medicine ,Animals ,Cyanogen Bromide ,Amino Acids ,Peptide sequence ,chemistry.chemical_classification ,Multidisciplinary ,biology ,Chemistry ,Liver cell ,Cell Membrane ,Oligosaccharide ,Trypsin ,Molecular biology ,Peptide Fragments ,Amino acid ,Molecular Weight ,Liver ,Biochemistry ,Antigens, Surface ,biology.protein ,Electrophoresis, Polyacrylamide Gel ,Glycoprotein ,Cell Adhesion Molecules ,Research Article ,medicine.drug - Abstract
A linear model of the liver cell adhesion molecule L-CAM from embryonic chickens is proposed in terms of its orientation on the cell surface, the number, type, and distribution of carbohydrate moieties, and sites of phosphorylation. L-CAM is isolated from cell membranes as a glycoprotein of Mr = 124,000. A soluble fragment (Ft1) of Mr = 81,000 can be released from cells by digestion with trypsin in the presence of calcium. Radiochemical amino acid sequence analyses indicated that both polypeptides have the same sequence for the first 10 amino acids, suggesting that fragment Ft1 contains the amino terminus of the L-CAM molecule and that the carboxyl-terminal portion of the peptide chain is associated with the cell. Digestions with endoglycosidase H and endoglycosidase F indicated that Ft1 has all of the N-linked carbohydrate groups associated with the larger species, including one high mannose oligosaccharide and three complex oligosaccharides. When hepatocytes were grown in the presence of 32PO4, 32P was detected in phosphoserine and phosphothreonine residues of intact L-CAM, but little or no 32P was detected in Ft1, suggesting that L-CAM is phosphorylated in the carboxyl-terminal region. On CNBr cleavage, the bulk of the 32P was detected in a single fragment of Mr = 20,000. The overall features of the L-CAM molecule incorporated in the model provide a basis for correlating its structure with its cell-cell binding activity and for detailed comparisons with similar molecules described in mammalian species.
- Published
- 1984
27. Chemical characterization of a neural cell adhesion molecule purified from embryonic brain membranes
- Author
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Urs Rutishauser, Stanley Hoffman, Bruce A. Cunningham, Barbara C. Sorkin, Perrin C. White, Robert Brackenbury, Gerald M. Edelman, and R Mailhammer
- Subjects
chemistry.chemical_classification ,Gel electrophoresis ,Cell Biology ,Biochemistry ,Sialic acid ,Amino acid ,Cell membrane ,chemistry.chemical_compound ,Membrane ,medicine.anatomical_structure ,chemistry ,medicine ,Glycoprotein ,Molecular Biology ,Polyacrylamide gel electrophoresis ,Integral membrane protein - Abstract
A neural cell adhesion molecule (N-CAM) was purified in milligram quantities from detergent extracts of embryonic chick brain membranes. N-CAM has an unusual carbohydrate content and structure, is polydisperse in solution, and is associated with proteolytic activity leading to its spontaneous cleavage. The carbohydrate composition of N-CAM includes 13 mol of sialic acid but only 1.4 mol of galactose/100 mol of amino acids, suggesting the presence of a sialic acid to protein linkage not previously observed in higher organisms. N-CAM appears to be an integral membrane protein in that its extraction from membranes required detergent. Although soluble, the purified molecule was aggregated (Mr = 0.5 to 1.2 X 10(6)) and polydisperse in detergent-free solutions. N-CAM from brain also migrated as a broad but continuously stained region from Mr = 200,000 to Mr = 250,000 on sodium dodecyl sulfate-polyacrylamide gel electrophoresis; the molecule from retina was similar but had a somewhat faster mobility. Desialation of N-CAM did not significantly change its behavior in solution, but converted both brain and retinal N-CAM to components migrating on sodium dodecyl sulfate-polyacrylamide gel electrophoresis as material of about Mr = 140,000. Despite the apparent heterogeneity, amino acid sequence analysis and comparison of proteolytic fragments suggest that all forms of the glycoprotein are derived from the same polypeptide chain. On prolonged incubation at neutral pH, N-CAM undergoes apparent proteolysis to yield a polypeptide that contains little sialic acid and has a Mr = 65,000 on sodium dodecyl sulfate-polyacrylamide gel electrophoresis, a separate sialic acid-rich component, and a variety of small peptides. The 65,000-dalton polypeptide appeared to contain all of the antigenic determinants of intact N-CAM that neutralize the adhesion-blocking ability of anti-retinal cell Fab' fragments.
- Published
- 1982
28. Sequence analysis of a cDNA clone encoding the liver cell adhesion molecule, L-CAM
- Author
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Bruce A. Cunningham, Barbara C. Sorkin, Warren J. Gallin, and Gerald M. Edelman
- Subjects
animal structures ,Sequence analysis ,Chick Embryo ,Biology ,Complementary DNA ,Sequence Homology, Nucleic Acid ,Cell Adhesion ,Animals ,Amino Acid Sequence ,Cloning, Molecular ,Peptide sequence ,Multidisciplinary ,Base Sequence ,Cell adhesion molecule ,Liver cell ,Protein primary structure ,Nucleic acid sequence ,DNA ,Molecular biology ,Biochemistry ,Genes ,Liver ,Antigens, Surface ,Immunoglobulin superfamily ,Cell Adhesion Molecules ,Chickens ,Research Article - Abstract
The liver cell adhesion molecule (L-CAM) appears on non-neural epithelial tissues and mediates calcium-dependent adhesion in these tissues both in the embryo and in the adult. It appears on cell surfaces as a glycoprotein of Mr 124,000 but is synthesized as a precursor of Mr 135,000. We have isolated and determined the nucleic acid sequence of a cDNA clone (lambda L320) encoding chicken L-CAM. The 5' end of this clone has an open reading frame extending for 2520 base pairs, followed by an 850-base-pair untranslated region terminating with a polyadenylylation site at its 3' end. Protein sequence analysis of intact L-CAM and of cyanogen bromide fragments of the protein confirmed the reading frame and indicated that lambda L320 encodes the complete sequence of L-CAM as it is expressed on the cell surface as well as the bulk of the precursor. The sequence includes a hydrophobic segment of 31 amino acids, supporting our earlier conclusion that L-CAM is an intrinsic membrane protein. There are five potential asparagine glycosylation sites on the extracellular part of the molecule and an intracellular domain that is phosphorylated in vivo. The mature L-CAM polypeptide consists of 727 amino acids, with a calculated Mr of 79,900 for the carbohydrate-free protein. The L-CAM sequence is not homologous to other known protein sequences, including those of the neural cell adhesion molecule (N-CAM) and other members of the immunoglobulin superfamily, but the L-CAM molecule does contain three contiguous segments (113 amino acids each) that are homologous to each other. The similarities among these segments suggest that at least part of the L-CAM molecule arose by gene duplication.
- Published
- 1987
29. Sulfation and phosphorylation of the neural cell adhesion molecule, N-CAM
- Author
-
Barbara C. Sorkin, Gerald M. Edelman, Bruce A. Cunningham, and Stanley Hoffman
- Subjects
Chick Embryo ,Biology ,In Vitro Techniques ,Phosphates ,Phosphoamino Acids ,chemistry.chemical_compound ,Phosphoserine ,Sulfation ,Animals ,Phosphorylation ,Multidisciplinary ,Molecular mass ,Cell adhesion molecule ,Sulfates ,Glycopeptides ,Brain ,Sialic acid ,Phosphothreonine ,Biochemistry ,chemistry ,Antigens, Surface ,Sialic Acids ,Neural cell adhesion molecule ,Cell Adhesion Molecules - Abstract
Embryonic chicken brain tissue cultured in media containing 35S-labeled sulfate or 32P-labeled phosphate incorporated 35S or 32P into the neural cell adhesion molecule (N-CAM). The 35S label was located in asparagine-linked carbohydrates on both glycopeptides (molecular weights, 170,000 and 140,000) but not in the sialic acid. The 32P label was detected in phosphoamino acids in the carboxyl-terminal third of both polypeptides, but the ratio of phosphoserine to phosphothreonine differed in the two species. The sulfated saccharides and phosphoamino acids may provide additional sites for functional control of N-CAM.
- Published
- 1984
30. Structure of the gene for the liver cell adhesion molecule, L-CAM
- Author
-
John J. Hemperly, Barbara C. Sorkin, Gerald M. Edelman, and Bruce A. Cunningham
- Subjects
animal structures ,Molecular Sequence Data ,Chick Embryo ,Protein Sorting Signals ,Biology ,Complementary DNA ,Cell Adhesion ,Animals ,Coding region ,Amino Acid Sequence ,Peptide sequence ,Gene ,Multidisciplinary ,Base Sequence ,Structural gene ,Alternative splicing ,Intron ,Nucleic Acid Hybridization ,DNA ,Exons ,Molecular biology ,Introns ,genomic DNA ,Antigens, Surface ,Cell Adhesion Molecules ,Research Article - Abstract
The liver cell adhesion molecule, L-CAM, mediates calcium-dependent cell-cell adhesion in early embryos and in nonneural epithelia in adult tissues. Earlier studies of cDNAs for chicken L-CAM established the amino acid sequence of the mature protein. The sequence has now been extended in the 5' direction through the precursor and signal sequences and past a consensus translation initiation site. The combined cDNAs were used to isolate genomic clones covering the entire L-CAM coding sequence. The structural gene for chicken L-CAM contains 16 exons ranging in size from 115 to over 1045 base pairs with an average size of 222 base pairs. Single exons do not correspond to known structural elements such as the signal sequence, precursor segment, internal repeats, or membrane-spanning region of L-CAM. Hybridization of restriction digests of chicken genomic DNA with cDNA and genomic probes indicated that there is a single L-CAM gene in the chicken. In contrast to genes for other cell-cell or cell-substrate adhesion molecules, there is no evidence for alternative splicing of exons in this gene.
31. Identification of two protein kinases that phosphorylate the neural cell-adhesion molecule, N-CAM
- Author
-
Paul Greengard, Barbara C. Sorkin, Ken Mackie, Angus C. Nairn, Bruce A. Cunningham, and Gerald M. Edelman
- Subjects
inorganic chemicals ,macromolecular substances ,environment and public health ,MAP2K7 ,Mice ,Cell Adhesion ,Phosphoprotein Phosphatases ,Animals ,Protein phosphorylation ,Phosphorylation ,Protein kinase A ,Cells, Cultured ,MAPK14 ,Cyclin-dependent kinase 1 ,biology ,General Neuroscience ,Cyclin-dependent kinase 2 ,Glycogen Synthase Kinases ,Cyclin-dependent kinase 3 ,Articles ,Rats ,Kinetics ,enzymes and coenzymes (carbohydrates) ,Biochemistry ,Antigens, Surface ,Calcium-Calmodulin-Dependent Protein Kinases ,biology.protein ,bacteria ,Casein kinase 2 ,Peptides ,Casein Kinases ,Cell Adhesion Molecules ,Chickens ,Protein Kinases - Abstract
The neural cell-adhesion molecule (N-CAM) is detected as at least 3 related polypeptides generated by alternative splicing of a single gene. In vivo the 2 larger polypeptides are phosphorylated, but the smallest polypeptide, which lacks a cytoplasmic domain, is not. We have found that the 2 larger polypeptides are phosphorylated in vivo on several common phosphorylation sites. Furthermore, the largest polypeptide has additional sites, suggesting that some phosphorylation occurs in that portion of the intracellular region unique to it. In vitro N-CAM is not a substrate for cyclic AMP-dependent protein kinase, cyclic GMP-dependent protein kinase, calcium/calmodulin-dependent protein kinase I, II, or III, protein kinase C, or casein kinase II. However, we have isolated 2 protein kinases from mammalian and avian brain that phosphorylate rodent and chicken N-CAM. On the basis of their chromatographic behavior and substrate specificity, the 2 kinases are glycogen synthase kinase 3 (GSK-3) and casein kinase I (CK I). The 2 kinases phosphorylate N-CAM rapidly, to a high stoichiometry and with a low Km for N-CAM, suggesting that the phosphorylation of N-CAM by these kinases is physiologically relevant. Both enzymes phosphorylate the 2 larger N-CAM polypeptides in vitro in the cytoplasmic domain on threonyl residues that are phosphorylated to a low level in vivo. In addition, the threonyl residues are close to seryl residues phosphorylated to a high level in vivo. Prior phosphorylation at the in vivo sites appears to be a prerequisite for phosphorylation by GSK-3 and CK I. Taken together, the results suggest that N-CAM may be physiologically phosphorylated on 2 sets of interrelated sites, one demonstrable in vivo and one in vitro. Phosphorylation on the “in vivo” sites is resistant to dephosphorylation and may be constitutive, while phosphorylation on the “in vitro” sites is much more labile.
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