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Context.—: Photobleaching artifact occurs when fluorescence intensity decreases following light exposure. Slides stained with fluorescent techniques may be stored in the dark until primary diagnostics. Experimental evidence suggesting the rate of photobleaching and necessity of dark storage is lacking., Objective.—: To compare photobleaching rate on direct immunofluorescence and Thioflavin T slides stored in ambient room light conditions and exposed to excitatory wavelengths., Design.—: During 2 iterations of the experiment, 45 slides were prepared, 42 with immunofluorescent antibodies plus 3 with thioflavin, from skin and kidney biopsies. The experimental group was stored in room light conditions in comparison to the control in the dark, at room temperature. Further, 1 immunofluorescence slide and 1 thioflavin slide were exposed to excitatory fluorescent light for several hours. Significant photobleaching was defined as an integer decrease in score (scale, 0-3)., Results.—: Exposure times ranged from 152 to 3034 hours. Nine of the 42 immunofluorescence slides (21%) photobleached after a minimum exposure of 152 hours to room light, with no significant difference between the experimental and control groups (all P values >.05). The immunofluorescence slide exposed to fluorescent light for 4 hours showed marked photobleaching in the exposed field but not elsewhere. No thioflavin slides showed clinically significant photobleaching under any conditions., Conclusions.—: Clinically significant photobleaching of slides exposed to room light may occur after a few days, but not a few hours (unless exposed to excitatory fluorescent light). Conversely, thioflavin-stained slides did not photobleach when exposed to ambient room air and photobleached only negligibly when exposed to excitatory fluorescent light., Competing Interests: The authors have no relevant financial interest in the products or companies described in this article., (© 2024 College of American Pathologists.)

We report a new spectroscopic detection scheme for molecular oxygen that achieves roughly two orders of magnitude higher sensitivity for fully rotationally resolved spectra than the current state of the art. Two-color (2 + 1') resonance-enhanced multiphoton ionization (REMPI) via the 3 d Rydberg complex yields state-selective spectra with signal comparable to the intense but diffuse C 3 s σ 3 Π g ← X 3 Σ g - (2 + 1) REMPI bands without significant saturation or broadening. The resulting increase in sensitivity permitted observation of the very weak 3 d π 1 Δ 2 ← X 3 Σ g - transitions and is independent of the intermediate state. This advance in ionization efficiency and quantum state-selective sensitivity for O 2 promises to aid physical and chemical studies across a wide variety of fields.

Despite their prevalence in biomass and importance in biochemistry, there is still much to be learned about simple carbohydrates. Gas-phase calculations are reported here on two trioses and three tetroses. For aldotetroses, both the open-chain and furanose forms are considered. Enthalpies of reduction to polyols are calculated at the CBS-APNO level of theory, and comparisons to simple aldehydes and ketones are made. Heats of formation are calculated in two ways with overall good agreement. The heat of formation of glyceraldehyde obtained from modified HEAT calculations is also reported. Finally, calculated bond energies are presented, and the influence of the structure on the bond energies is discussed.

The Hoveyda-Grubbs catalyst ( HG2 , M720 Umicore) is among the most widely used catalysts in olefin metathesis reactions. Given the usefulness of HG2 and the great interest in developing latent olefin metathesis catalysts for numerous applications, we developed a method to introduce phosphite molecules as ancillary ligands into the precatalyst framework. This modification alters the geometry of the complex from an active trans -dichloro form to a latent cis -dichloro species. Most unusually, the ligands coordinate to HG2 only in solidified solutions (most likely due to entropic factors), providing latent catalysts that can be activated on demand by heat or light by regenerating the original HG2 catalyst. Of particular interest is the use of these latent catalysts in ring-opening metathesis polymerization (ROMP) reactions and 3D printing methods. Indeed, the novel complexes displayed the required latency toward ROMP monomers, even the most reactive dicyclopentadiene. Irradiation with 405 nm light readily results in the expedited formation of the desired polymers. This novel approach provides a general and straightforward way to access efficient and well-defined latent olefin metathesis catalysts.

We report the first direct detection of ethyl radical in the pyrolysis of ethane. Observation of this vital intermediate was made possible in this extremely reactive environment by the use of a microreactor coupled with synchrotron radiation and photoelectron photoion coincidence (PEPICO) spectroscopy, despite its short lifetime and low concentration. Together with ab-initio master equation-calculated rates and fully coupled computational fluid dynamics simulations, our measurements show that even under the low pressures and short residence times in our experiment, ethyl formation can only be explained by bimolecular reactions; the most important is the catalytic attack of ethane by H atoms, which are then regenerated by decomposition of the nascent ethyl radicals. Our results complete the observation of all hypothesized intermediates in this industrially important process and highlight the need for further studies under additional conditions using similar methods to improve existing models and optimize process chemistries., (© 2023 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)

Multispectral photodetectors (MSPs) and circularly polarized light (CPL) sensors are important in opto-electronics, photonics, and imaging. A capacitive photodetector consisting of an interdigitated electrode coated with carbon dot/anthraquinone-polydiacetylene is constructed. Photoexcitation of the carbon dots induces transient electron transfer to the anthraquinone moieties, and concomitant change in the film dielectric constant and recorded capacitance. This unique photodetection mechanism furnishes wavelength selectivity that is solely determined by the absorbance of the carbon dots incorporated in the anthraquinone-polydiacetylene matrix. Accordingly, employing an array of polymerized-anthraquinone photodetector films comprising carbon dots (C-dots) exhibiting different excitation wavelengths yielded optical "capacitive fingerprints" in a broad spectral range (350-650 nm). Furthermore, circular light polarization selectivity is achieved through chiral polymerization of the polydiacetylene framework. The carbon dot/anthraquinone-polydiacetylene capacitive photodetector features rapid photo-response, high fidelity, and recyclability as the redox reactions of anthraquinone are fully reversible. The carbon dot/anthraquinone-polydiacetylene platform is inexpensive, easy to fabricate, and consists of environmentally friendly materials., (© 2022 The Authors. Small published by Wiley-VCH GmbH.)

The unique optical cycling efficiency of alkaline earth metal-ligand molecules has enabled significant advances in polyatomic laser cooling and trapping. Rotational spectroscopy is an ideal tool for probing the molecular properties that underpin optical cycling, thereby elucidating the design principles for expanding the chemical diversity and scope of these platforms for quantum science. We present a comprehensive study of the structure and electronic properties in alkaline earth metal acetylides with high-resolution microwave spectra of 17 isotopologues of MgCCH, CaCCH, and SrCCH in their 2 Σ + ground electronic states. The precise semiexperimental equilibrium geometry of each species has been derived by correcting the measured rotational constants for electronic and zero-point vibrational contributions calculated with high-level quantum chemistry methods. The well-resolved hyperfine structure associated with the 1,2 H, 13 C, and metal nuclear spins provides further information on the distribution and hybridization of the metal-centered, optically active unpaired electron. Together, these measurements allow us to correlate trends in chemical bonding and structure with the electronic properties that promote efficient optical cycling essential to next-generation experiments in precision measurement and quantum control of complex polyatomic molecules.

We report the resonance-enhanced two-photon ionization combined with various detection approaches and quantum chemical calculations of biologically relevant neurotransmitter prototypes, the most stable conformer of 2-phenylethylamine (PEA), and its monohydrate, PEA-H 2 O, to reveal the possible interactions between the phenyl ring and amino group in the neutral and ionic species. Extracting the ionization energies (IEs) and appearance energy was achieved by measuring the photoionization and photodissociation efficiency curves of the PEA parent and photofragment ions, together with velocity and kinetic energy-broadened spatial map images of photoelectrons. We obtained coinciding upper bounds for the IEs for PEA and PEA-H 2 O of 8.63 ± 0.03 and 8.62 ± 0.04 eV, within the range predicted by quantum calculations. The computed electrostatic potential maps show charge separation, corresponding to a negative charge on phenyl and a positive charge on the ethylamino side chain in the neutral PEA and its monohydrate; in the cations, the charge distributions naturally become positive. The significant changes in geometries upon ionization include switching of the amino group orientation from pyramidal to nearly planar in the monomer but not in the monohydrate, lengthening of the N-H⋯π hydrogen bond (HB) in both species, C α -C β bond in the side chain of the PEA + monomer, and the intermolecular O-H⋯N HB in PEA-H 2 O cations, leading to distinct exit channels.

We provide compelling experimental and theoretical evidence for the transition state nature of the cyclopropyl cation. Synchrotron photoionization spectroscopy employing coincidence techniques together with a novel simulation based on high-accuracy ab initio calculations reveal that the cation is unstable via its allowed disrotatory ring-opening path. The ring strains of the cation and the radical are similar, but both ring opening paths for the radical are forbidden when the full electronic symmetries are considered. These findings are discussed in light of the early predictions by Longuet-Higgins alongside Woodward and Hoffman; we also propose a simple phase space explanation for the appearance of the cyclopropyl photoionization spectrum. The results of this work allow the refinement of the cyclopropane C-H bond dissociation energy, in addition to the cyclopropyl radical and cation cyclization energies, via the Active Thermochemical Tables approach.

The highly successful velocity map imaging (VMI) technique plays a central role in revealing light-matter interactions. Here we demonstrate the related but distinct kinetic energy-broadened spatial map imaging (KESMI) option for recovering KE and angular recoil information on photophysical processes using a VMI system operating in different out-of-focus modes. The characteristic single or double stripes and related steps in the vertical intensity profiles of KESMIs of photoelectrons (PEs) from Ar ionization allow breakthrough developments of a potent global model that enables an understanding and analysis of these patterns. These signatures reflect the relationship between the observed features and predicted convolved discrete KEs and angular distributions. The derivation of the velocity distribution of the PEs ensuing from the ionization of a single H 2 O quantum state based on the measured and simulated KESMI provides another rigorous test demonstrating and realizing the feasibility of this new approach, which holds future promise on its own or combined with VMI.

Molecular electronic spectra can be represented in the time domain as auto-correlation functions of the initial vibrational wavepacket. We present a derivation of the harmonic vibrational auto-correlation function that is valid for both real and imaginary harmonic frequencies. The derivation rests on Lie algebra techniques that map otherwise complicated exponential operator arithmetic to simpler matrix formulas. The expressions for the zero- and finite-temperature harmonic auto-correlation functions have been carefully structured both to be free of branch-cut discontinuities and to remain numerically stable with finite-precision arithmetic. Simple extensions correct the harmonic Franck-Condon approximation for the lowest-order anharmonic and Herzberg-Teller effects. Quantitative simulations are shown for several examples, including the electronic absorption spectra of F 2 , HOCl, CH 2 NH, and NO 2 .

Dynamical or spatial properties of charged species can be obtained using electrostatic lenses by velocity map imaging (VMI) or spatial map imaging (SMI), respectively. Here, we report an approach for extracting dynamical and spatial information from patterns in SMI images that map the initial coordinates, velocity vectors, and angular distributions of charged particles onto the detector, using the same apparatus as in VMI. Deciphering these patterns required analysis and modeling, involving both their predictions from convolved spatial and velocity distributions and fitting observed images to kinetic energies (KEs) and anisotropy parameters (βs). As the first demonstration of this capability of SMI, the ensuing photoelectrons resulting from (2 + 1) resonant ionization of water in a selected rotational state were chosen to provide a rigorous basis for comparison to VMI. Operation with low acceleration voltages led to a measured SMI pattern with a unique vertical intensity profile that could be least-squares fitted to yield KE and β, in good agreement with VMI measurement. Due to the potential for improved resolution and the extended KE range achievable by this new technique, we expect that it might augment VMI in applications that require the analysis of charged particles and particularly in processes with high KE release.

Unveiling reaction mechanisms by isomer-selective detection of reactive intermediates requires advanced spectroscopic knowledge. We study the photoionization of fulvenone (c-C 5 H 4 =C=O), a reactive ketene species relevant in catalytic pyrolysis of lignin, which was generated by pyrolysis of 2-methoxy acetophenone. The high-resolution threshold photoelectron spectrum (TPES) with vacuum ultraviolet synchrotron radiation revealed well-resolved vibrational transitions, assigned to ring deformation modes of the cyclopentadiene moiety. The adiabatic ionization energy was determined to be 8.25±0.01 eV and is assigned to the X ˜ + 2 A 2 ← X ˜ 1 A 1 transition. A broad and featureless band arising at 9 eV is associated with the A ˜ + 2 B 1 ← X ˜ 1 A 1 excitation. A conical intersection is responsible for the ultrafast relaxation of the fulvenone cation from the A ˜ + into the X ˜ + state resulting in a featureless and lifetime broadened band. These insights will increase the detection capabilities for fulvenone and thereby help to elucidate reaction mechanisms in lignin catalytic pyrolysis., (© 2020 Wiley-VCH GmbH.)

Hydroperoxides from the ozonolysis of alkenes, in addition to Criegee intermediates, have been proposed as an atmospheric source of OH radicals in the absence of sunlight, but have remained largely elusive due to their reactivity. A weak peroxide bond enables facile OH elimination, and subsequent β-scission can lead to a variety of decomposition products depending on the nature of the peroxide. In this paper we explore this process theoretically for the simplest ketohydroperoxide, hydroperoxyacetaldehyde (HPA), which is believed to be formed in the ozonolysis of ethylene. Despite it being the most stable C 2 H 4 O 3 species in this reaction scheme, lower in energy than the starting materials by around 100 kcal mol -1 , HPA has only been directly observed once in the ozonolysis of ethylene by photoionization mass spectrometry appearance energy. Here we report predictions of the rotational spectrum of HPA conducted in support of microwave spectroscopy experiments. We suggest a new dissociation path from HPA to glyoxal [HOOCH 2 CHO → HCOCH 2 O + OH → CHOCHO + H], supported by thermochemical calculations. We encourage the search for glyoxal using complementary experimental methods, and suggest possible future experimental directions. Evidence of glyoxal formation from ethylene ozonolysis might provide evidence of this underappreciated path in an important and long studied reaction system.

The high resolution far-infrared spectrum of trans -butadiene has been reinvestigated by Fourier-transform spectroscopy at two synchrotron radiation facilities, SOLEIL and the Canadian Light Source, at temperatures ranging from 50 to 340 K. Beyond the well-studied bands, two new fundamental bands lying below 1100 cm -1 , ν 10 and ν 24 , have been assigned using a combination of cross-correlation (ASAP software) and Loomis-Wood type (LWWa software) diagrams. While the ν 24 analysis was rather straightforward, ν 10 exhibits obvious signs of a strong perturbation, presumably owing to interaction with the dark ν 9 + ν 12 state. Effective rotational constants have been derived for both the v 10 = 1 and v 24 = 1 states. Since only one weak, infrared active fundamental band (ν 23 ) of trans -butadiene remains to be observed at high resolution in the far-infrared, searches for the elusive gauche conformer can now be undertaken with considerably greater confidence in the dense ro-vibrational spectrum of the trans form.

The 193-nm photolysis of CH 2 CHCN illustrates the capability of chirped-pulse Fourier transform millimeter-wave spectroscopy to characterize transition states. We investigate the HCN, HNC photofragments in highly excited vibrational states using both frequency and intensity information. Measured relative intensities of J = 1-0 rotational transition lines yield vibrational-level population distributions (VPD). These VPDs encode the properties of the parent molecule transition state at which the fragment molecule was born. A Poisson distribution formalism, based on the generalized Franck-Condon principle, is proposed as a framework for extracting information about the transition-state structure from the observed VPD. We employ the isotopologue CH 2 CDCN to disentangle the unimolecular 3-center DCN elimination mechanism from other pathways to HCN. Our experimental results reveal a previously unknown transition state that we tentatively associate with the HCN eliminated via a secondary, bimolecular reaction., Competing Interests: The authors declare no competing interest.

A number of economical modifications to the high-accuracy extrapolated ab initio thermochemistry (HEAT) model chemistry are evaluated. The two resulting schemes, designated as mHEAT and mHEAT+, are designed for efficient and pragmatic evaluation of molecular energies in systems somewhat larger than can be practically studied by the unapproximated HEAT scheme. It is found that mHEAT+ produces heats of formation with nearly subchemical (±1 kJ/mol) accuracy at a substantially reduced cost relative to the full scheme. Total atomization energies calculated using the new thermochemical recipes are compared to the results of the HEAT-345(Q) model chemistry, and enthalpies of formation for the three protocols are also compared to Active Thermochemical Tables. Finally, a small selection of transition states is studied using mHEAT and mHEAT+, which illuminates some interesting features of reaction barriers and serves as an initial benchmark of the performance of these model chemistries for chemical kinetics applications.

Rotational spectroscopy is an invaluable tool to unambiguously determine the molecular structure of a species, and sometimes even to establish its very existence. This article illustrates how experimental and theoretical state-of-the-art tools can be used in tandem to investigate the rotational structure of molecules, with particular emphasis on those that have long remained elusive. The examples of three emblematic species-gauche-butadiene, disilicon carbide, and germanium dicarbide-highlight the close, mutually beneficial interaction between high-level theoretical calculations and sensitive microwave measurements. Prospects to detect other elusive molecules of chemical and astronomical interest are discussed., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Isoprene (2-methyl-1,3-butadiene) is highly abundant in the atmosphere, second only to methane in hydrocarbon emissions. In contrast to the most stable trans rotamer, structural characterization of gauche-isoprene has proven challenging: it is weakly polar, present at the level of only a few percent at room temperature, and structurally complex due to both torsional and methyl tunneling motions. gauche-Isoprene has been observed by two distinct but complementary experimental approaches: chirped-pulse Fourier transform microwave (CP-FTMW) spectroscopy coupled with cryogenic buffer gas cooling, and cavity-enhanced FTMW spectroscopy with a pulsed discharge source. Thermal enhancement of the gauche population (from 1.7% to 10.3%) was observed in the cryogenic buffer gas cell when the sample was preheated from 300 to 450 K, demonstrating that high-energy rotamers can be efficiently isolated under our experimental conditions. Rotational parameters for the inversion states (0 + /0 - ) have been determined for the first time, aided by calculations at increasing levels of theoretical sophistication. From this combined analysis, the inversion splitting Δ E and the F bc Coriolis coupling constant between the two inversion states have been derived.

Surprising features in a recently published high-level calculation of the rotational profile of butadiene led us to compare butadiene with a set of 17 heterodienes. The rotational profiles for this large group of compounds varied widely, thereby possessing a high information content. These data were subjected to a Fourier analysis yielding 1- through 6-fold terms: the one-fold terms represent the change in steric energy on going from 180° to 0°, while the changes in the 2-fold terms correspond to the expected change in π-delocalization energy with structure; the 3-fold terms were significant and found to be linearly correlated to the average of the atomic charges of the atoms at the central single bond of the cis-forms, but their origins are still not clear; we propose a novel 1,4 π-interactions that may account for this phenomenon. The 4-fold terms were at times comparable in magnitude to the 3-fold terms but overall appeared to mainly modify the 3-fold terms slightly without introducing any qualitatively new features. The 5- and 6-fold terms were negligible.

The nascent steps in the pyrolysis of the lignin components salicylaldehyde ( o-HOC 6 H 4 CHO) and catechol ( o-HOC 6 H 4 OH) were studied in a set of heated microreactors. The microreactors are small (roughly 1 mm ID × 3 cm long); transit times through the reactors are about 100 μs. Temperatures in the microreactors can be as high as 1600 K, and pressures are typically a few hundred torr. The products of pyrolysis are identified by a combination of photoionization mass spectrometry, photoelectron photoion concidence mass spectroscopy, and matrix isolation infrared spectroscopy. The main pathway by which salicylaldehyde decomposes is a concerted fragmentation: o-HOC 6 H 4 CHO (+ M) → H 2 + CO + C 5 H 4 ═C═O (fulveneketene). At temperatures above 1300 K, fulveneketene loses CO to yield a mixture of HC≡C-C≡C-CH 3 , HC≡C-CH 2 -C≡CH, and HC≡C-CH═C═CH 2 . These alkynes decompose to a mixture of radicals (HC≡C-C≡C-CH 2 and HC≡C-CH-C≡CH) and H atoms. H-atom chain reactions convert salicylaldehyde to phenol: o-HOC 6 H 4 CHO + H → C 6 H 5 OH + CO + H. Catechol has similar chemistry to salicylaldehyde. Electrocyclic fragmentation produces water and fulveneketene: o-HOC 6 H 4 OH (+ M) → H 2 O + C 5 H 4 ═C═O. These findings have implications for the pyrolysis of lignin itself.

The planarity of the second stable conformer of 1,3-butadiene, the archetypal diene for the Diels-Alder reaction in which a planar conjugated diene and a dienophile combine to form a ring, is not established. The most recent high level calculations predicted the species to adopt a twisted, gauche structure owing to steric interactions between the inner terminal hydrogens rather than a planar, cis structure favored by the conjugation of the double bonds. The structure cis-1,3-butadiene is unambiguously confirmed experimentally to indeed be gauche with a substantial dihedral angle of 34°, in excellent agreement with theory. Observation of two tunneling components indicates that the molecule undergoes facile interconversion between two equivalent enantiomeric forms. Comparison of experimentally determined structures for gauche- and trans-butadiene provides an opportunity to examine the effects of conjugation and steric interactions., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The adiabatic ionization energy of hydrogen peroxide (HOOH) is investigated, both by means of theoretical calculations and theoretically assisted reanalysis of previous experimental data. Values obtained by three different approaches: 10.638 ± 0.012 eV (purely theoretical determination), 10.649 ± 0.005 eV (reanalysis of photoelectron spectrum), and 10.645 ± 0.010 eV (reanalysis of photoionization spectrum) are in excellent mutual agreement. Further refinement of the latter two values to account for asymmetry of the rotational profile of the photoionization origin band leads to a reduction of 0.007 ± 0.006 eV, which tends to bring them into even closer alignment with the purely theoretical value. Detailed analysis of this fundamental quantity by the Active Thermochemical Tables approach, using the present results and extant literature, gives a final estimate of 10.641 ± 0.006 eV.

We report the combination of tabletop vacuum ultraviolet photoionization with photoion-photoelectron coincidence spectroscopy for sensitive, isomer-specific detection of nascent products from a pyrolysis microreactor. Results on several molecules demonstrate two essential capabilities that are very straightforward to implement: the ability to differentiate isomers and the ability to distinguish thermal products from dissociative ionization. Here, vacuum ultraviolet light is derived from a commercial tabletop femtosecond laser system, allowing data to be collected at 10 kHz; this high repetition rate is critical for coincidence techniques. The photoion-photoelectron coincidence spectrometer uses the momentum of the ion to identify dissociative ionization events and coincidence techniques to provide a photoelectron spectrum specific to each mass, which is used to distinguish different isomers. We have used this spectrometer to detect the pyrolysis products that result from the thermal cracking of acetaldehyde, cyclohexene, and 2-butanol. The photoion-photoelectron spectrometer can detect and identify organic radicals and reactive intermediates that result from pyrolysis. Direct comparison of laboratory and synchrotron data illustrates the advantages and potential of this approach.

Two methyl esters were examined as models for the pyrolysis of biofuels. Dilute samples (0.06-0.13%) of methyl acetate (CH 3 COOCH 3 ) and methyl butanoate (CH 3 CH 2 CH 2 COOCH 3 ) were entrained in (He, Ar) carrier gas and decomposed in a set of flash-pyrolysis microreactors. The pyrolysis products resulting from the methyl esters were detected and identified by vacuum ultraviolet photoionization mass spectrometry. Complementary product identification was provided by matrix infrared absorption spectroscopy. Pyrolysis pressures in the pulsed microreactor were about 20 Torr and residence times through the reactors were roughly 25-150 μs. Reactor temperatures of 300-1600 K were explored. Decomposition of CH 3 COOCH 3 commences at 1000 K, and the initial products are (CH 2 ═C═O and CH 3 OH). As the microreactor is heated to 1300 K, a mixture of CH 2 ═C═O and CH 3 OH, CH 3 , CH 2 ═O, H, CO, and CO 2 appears. The thermal cracking of CH 3 CH 2 CH 2 COOCH 3 begins at 800 K with the formation of CH 3 CH 2 CH═C═O and CH 3 OH. By 1300 K, the pyrolysis of methyl butanoate yields a complex mixture of CH 3 CH 2 CH═C═O, CH 3 OH, CH 3 , CH 2 ═O, CO, CO 2 , CH 3 CH═CH 2 , CH 2 CHCH 2 , CH 2 ═C═CH 2 , HCCCH 2 , CH 2 ═C═C═O, CH 2 ═CH 2 , HC≡CH, and CH 2 ═C═O. On the basis of the results from the thermal cracking of methyl acetate and methyl butanoate, we predict several important decomposition channels for the pyrolysis of fatty acid methyl esters, R-CH 2 -COOCH 3 . The lowest-energy fragmentation will be a 4-center elimination of methanol to form the ketene RCH═C═O. At higher temperatures, concerted fragmentation to radicals will ensue to produce a mixture of species: (RCH 2 + CO 2 + CH 3 ) and (RCH 2 + CO + CH 2 ═O + H). Thermal cracking of the β C-C bond of the methyl ester will generate the radicals (R and H) as well as CH 2 ═C═O + CH 2 ═O. The thermochemistry of methyl acetate and its fragmentation products were obtained via the Active Thermochemical Tables (ATcT) approach, resulting in Δ f H 298 (CH 3 COOCH 3 ) = -98.7 ± 0.2 kcal mol -1 , Δ f H 298 (CH 3 CO 2 ) = -45.7 ± 0.3 kcal mol -1 , and Δ f H 298 (COOCH 3 ) = -38.3 ± 0.4 kcal mol -1 .

We present a perturbative method for ab initio calculations of rotational and rovibrational effective Hamiltonians of both rigid and non-rigid molecules. Our approach is based on a curvilinear implementation of second order vibrational Møller-Plesset perturbation theory extended to include rotational effects via a second order contact transformation. Though more expensive, this approach is significantly more accurate than standard second order vibrational perturbation theory for systems that are poorly described to zeroth order by rectilinear normal mode harmonic oscillators. We apply this method to and demonstrate its accuracy on two molecules: Si 2 C, a quasilinear triatomic with significant bending anharmonicity, and CH 3 NO 2 , which contains a completely unhindered methyl rotor. In addition to these two examples, we discuss several key technical aspects of the method, including an efficient implementation of Eckart and quasi-Eckart frame embedding that does not rely on numerical finite differences.

Both glycolaldehyde and glyoxal were pyrolyzed in a set of flash-pyrolysis microreactors. The pyrolysis products resulting from CHO-CH2OH and HCO-CHO were detected and identified by vacuum ultraviolet (VUV) photoionization mass spectrometry. Complementary product identification was provided by argon matrix infrared absorption spectroscopy. Pyrolysis pressures in the microreactor were about 100 Torr, and contact times with the microreactors were roughly 100 μs. At 1200 K, the products of glycolaldehyde pyrolysis are H atoms, CO, CH2═O, CH2═C═O, and HCO-CHO. Thermal decomposition of HCO-CHO was studied with pulsed 118.2 nm photoionization mass spectrometry and matrix infrared absorption. Under these conditions, glyoxal undergoes pyrolysis to H atoms and CO. Tunable VUV photoionization mass spectrometry provides a lower bound for the ionization energy (IE)(CHO-CH2OH) ≥ 9.95 ± 0.05 eV. The gas-phase heat of formation of glycolaldehyde was established by a sequence of calorimetric experiments. The experimental result is ΔfH298(CHO-CH2OH) = -75.8 ± 1.3 kcal mol(-1). Fully ab initio, coupled cluster calculations predict ΔfH0(CHO-CH2OH) of -73.1 ± 0.5 kcal mol(-1) and ΔfH298(CHO-CH2OH) of -76.1 ± 0.5 kcal mol(-1). The coupled-cluster singles doubles and noniterative triples correction calculations also lead to a revision of the geometry of CHO-CH2OH. We find that the O-H bond length differs substantially from earlier experimental estimates, due to unusual zero-point contributions to the moments of inertia.

A high level ab initio calculation of the cis-trans isomerization barrier height in the first excited singlet electronic state of acetylene is found to agree very well with a recent experimental determination.

We report an optically accessible pyrolysis micro-reactor suitable for in situ laser spectroscopic measurements. A radiative heating design allows for completely unobstructed views of the micro-reactor along two axes. The maximum temperature demonstrated here is only 1300 K (as opposed to 1700 K for the usual SiC micro-reactor) because of the melting point of fused silica, but alternative transparent materials will allow for higher temperatures. Laser induced fluorescence measurements on nitric oxide are presented as a proof of principle for spectroscopic characterization of pyrolysis conditions.

The thermal decomposition of cyclohexanone (C6H10═O) has been studied in a set of flash-pyrolysis microreactors. Decomposition of the ketone was observed when dilute samples of C6H10═O were heated to 1200 K in a continuous flow microreactor. Pyrolysis products were detected and identified by tunable VUV photoionization mass spectroscopy and by photoionization appearance thresholds. Complementary product identification was provided by matrix infrared absorption spectroscopy. Pyrolysis pressures were roughly 100 Torr, and contact times with the microreactors were roughly 100 μs. Thermal cracking of cyclohexanone appeared to result from a variety of competing pathways, all of which open roughly simultaneously. Isomerization of cyclohexanone to the enol, cyclohexen-1-ol (C6H9OH), is followed by retro-Diels-Alder cleavage to CH2═CH2 and CH2═C(OH)-CH═CH2. Further isomerization of CH2═C(OH)-CH═CH2 to methyl vinyl ketone (CH3CO-CH═CH2, MVK) was also observed. Photoionization spectra identified both enols, C6H9OH and CH2═C(OH)-CH═CH2, and the ionization threshold of C6H9OH was measured to be 8.2 ± 0.1 eV. Coupled cluster electronic structure calculations were used to establish the energetics of MVK. The heats of formation of MVK and its enol were calculated to be ΔfH298(cis-CH3CO-CH═CH2) = -26.1 ± 0.5 kcal mol(-1) and ΔfH298(s-cis-1-CH2═C(OH)-CH═CH2) = -13.7 ± 0.5 kcal mol(-1). The reaction enthalpy ΔrxnH298(C6H10═O → CH2═CH2 + s-cis-1-CH2═C(OH)-CH═CH2) is 53 ± 1 kcal mol(-1) and ΔrxnH298(C6H10═O → CH2═CH2 + cis-CH3CO-CH═CH2) is 41 ± 1 kcal mol(-1). At 1200 K, the products of cyclohexanone pyrolysis were found to be C6H9OH, CH2═C(OH)-CH═CH2, MVK, CH2CHCH2, CO, CH2═C═O, CH3, CH2═C═CH2, CH2═CH-CH═CH2, CH2═CHCH2CH3, CH2═CH2, and HC≡CH.

Transition state theory is central to our understanding of chemical reaction dynamics. We demonstrate a method for extracting transition state energies and properties from a characteristic pattern found in frequency-domain spectra of isomerizing systems. This pattern-a dip in the spacings of certain barrier-proximal vibrational levels-can be understood using the concept of effective frequency, ω(eff). The method is applied to the cis-trans conformational change in the S1 state of C2H2 and the bond-breaking HCN-HNC isomerization. In both cases, the barrier heights derived from spectroscopic data agree extremely well with previous ab initio calculations. We also show that it is possible to distinguish between vibrational modes that are actively involved in the isomerization process and those that are passive bystanders., (Copyright © 2015, American Association for the Advancement of Science.)

The value for the HCN → HNC 0 K isomerization energy has been investigated by combining state-of-the-art electronic structure methods with the Active Thermochemical Tables (ATcT) approach. The directly computed energy difference between HCN and HNC at the HEAT-456QP level of theory is 5236 ± 50 cm(-1). This is substantially lower (by ∼470 cm(-1) or ∼1.3 kcal/mol) than the recently proposed high-level multireference configuration interaction value of 5705 ± 20 cm(-1) of Barber et al. ( Mon. Not. R. Astron. Soc. 2014, 437, 1828-1835 ). The discrepancy was analyzed by the ATcT approach, using several distinct steps, which (a) independently corroborated the current single-reference HEAT-456QP result, (b) independently found that the recent multireference-based value is highly unlikely to be correct within its originally stated uncertainty, and (c) produced a recommended value of 5212 ± 30 cm(-1) for the HCN → HNC isomerization energy at 0 K, based on all currently available knowledge. The ATcT standard enthalpies of formation at 0 and 298 K for HCN, HNC, and their cations and anions are also presented.

We report high-resolution photoelectron spectra of the simplest carbanions, CH₃⁻ and CD₃⁻. The vibrationally resolved spectra are dominated by a long progression in the umbrella mode (ν₂) of ˙CH₃ and ˙CD₃, indicating a transition from a pyramidal C(3v) anion to the planar D(3h) methyl radical. Analysis of the spectra provides electron affinities of ˙CH₃ (0.093(3) eV) and ˙CD₃ (0.082(4) eV). These results enable improved determination of the corresponding gas-phase acidities: Δ(acid)H(0K)°(CH₄) = 414.79(6) kcal/mol and Δ(acid)H(0K)°(CD₄) = 417.58(8) kcal/mol. On the basis of the photoelectron anisotropy distribution, the electron is photodetached from an orbital with predominant p-character, consistent with the sp³-hybridized orbital picture of the pyramidal anion. The double-well potential energy surface along the umbrella inversion coordinate leads to a splitting of the vibrational energy levels of the umbrella mode. The inversion splittings of CH₃⁻ and CD₃⁻ are 21(5) and 6(4) cm⁻¹, respectively, and the corresponding anion umbrella vibrational frequencies are 444(13) and 373(12) cm⁻¹, respectively. Quantum mechanical calculations reported herein show good agreement with the experimental data and provide insight regarding the electronic potential energy surface of CH₃⁻.

We report novel experimental strategies that should prove instrumental in extending the vibrational and rotational assignments of the S1 state of acetylene, C2H2, in the region of the cis-trans isomerization barrier. At present, the assignments are essentially complete up to ∼500 cm(-1) below the barrier. Two difficulties arise when the assignments are continued to higher energies. One is that predissociation into C2H + H sets in roughly 1100 cm(-1) below the barrier; the resulting quenching of laser-induced fluorescence (LIF) reduces its value for recording spectra in this region. The other difficulty is that tunneling through the barrier causes a staggering in the K-rotational structure of isomerizing vibrational levels. The assignment of these levels requires data for K values up to at least 3. Given the rotational selection rule K' - ℓ('') = ± 1, such data must be obtained via excited vibrational levels of the ground state with ℓ('') > 0. In this paper, high resolution H-atom resonance-enhanced multiphoton ionization spectra are demonstrated to contain predissociated bands which are almost invisible in LIF spectra, while preliminary data using a hyperthermal pulsed nozzle show that ℓ('') = 2 states can be selectively populated in a jet, giving access to K' = 3 states in IR-UV double resonance.

We report the observation of eigenstates that embody large-amplitude, local-bending vibrational motion in acetylene by stimulated emission pumping spectroscopy via vibrational levels of the S1 state involving excitation in the non-totally symmetric bending modes. The N(b) = 14 level, lying at 8971.69 cm(-1) (J = 0), is assigned on the basis of degeneracy due to dynamical symmetry breaking in the local-mode limit. The level pattern for the N(b) = 16 level, lying at 10 218.9 cm(-1), is consistent with expectations for increased separation of ℓ = 0 and 2 vibrational angular momentum components. Increasingly poor agreement between our observations and the predicted positions of these levels highlights the failure of currently available normal mode effective Hamiltonian models to extrapolate to regions of the potential energy surface involving large-amplitude displacement along the acetylene ⇌ vinylidene isomerization coordinate.

We report infrared spectra of nitromethane anion, CH3NO2 (-), in the region 700-2150 cm(-1), obtained by Ar predissociation spectroscopy and electron detachment spectroscopy. The data are interpreted in the framework of second-order vibrational perturbation theory based on coupled-cluster electronic structure calculations. The modes in the spectroscopic region studied here are mainly based on vibrations involving the heavier atoms; this work complements earlier studies on nitromethane anion that focused on the CH stretching region of the spectrum. Electron detachment begins at photon energies far below the adiabatic electron affinity due to thermal population of excited vibrational states.

We report the gas-phase optical detection of Si2C near 390 nm and the first experimental investigation of the rovibrational structure of its (1)A1 ground electronic state using mass-resolved and fluorescence spectroscopy and variational calculations performed on a high-level ab initio potential. From this joint study, it is possible to assign all observed Ka = 1 vibrational levels up to 3800 cm(-1) with confidence, as well as a number of levels in the Ka = 0, 2,  and 3 manifolds. Dixon-dip plots for the bending coordinate (ν2) allow an experimental determination of a barrier to linearity of 783(48) cm(-1) (2σ), in good agreement with theory (802(9) cm(-1)). The calculated (Ka, ν2) eigenvalue lattice shows an archetypal example of quantum monodromy (absence of a globally valid set of quantum numbers) that is reflected by the experimentally observed rovibrational levels. The present study provides a solid foundation for infrared and optical surveys of Si2C in astronomical objects, particularly in the photosphere of N- and J-type carbon stars where the isovalent SiC2 molecule is known to be abundant.

We report the discovery in space of a disilicon species, SiCSi, from observations between 80 and 350 GHz with the IRAM 30m radio telescope. Owing to the close coordination between laboratory experiments and astrophysics, 112 lines have now been detected in the carbon-rich star CW Leo. The derived frequencies yield improved rotational and centrifugal distortion constants up to sixth order. From the line profiles and interferometric maps with the Submillimeter Array, the bulk of the SiCSi emission arises from a region of 6″ in radius. The derived abundance is comparable to that of SiC 2 . As expected from chemical equilibrium calculations, SiCSi and SiC 2 are the most abundant species harboring a Si-C bond in the dust formation zone and certainly both play a key role in the formation of SiC dust grains.

The rotational spectrum of the elusive but fundamentally important silicon carbide SiCSi has been detected using sensitive microwave techniques aided by high-level ab initio methods. Its equilibrium structure has been determined to very high precision using isotopic substitution and vibrational corrections calculated quantum-chemically: it is an isosceles triangle with a Si-C bond length of 1.693(1) Å, and an apex angle of 114.87(5)°. Now that all four Si(m)C(n) clusters with m + n = 3 have been observed experimentally, their structure and chemical bonding can be rigorously compared. Because Si2C is so closely linked to other Si-bearing molecules that have been detected in the evolved carbon star IRC+10216, it is an extremely promising candidate for detection with radio telescopes.

The acetylene emission spectrum from the trans-bent electronically excited à state to the linear ground electronic X̃ state has attracted considerable attention because it grants Franck–Condon access to local bending vibrational levels of the X̃ state with large-amplitude motion along the acetylene ⇌ vinylidene isomerization coordinate. For emission from the ground vibrational level of the à state, there is a simplifying set of Franck–Condon propensity rules that gives rise to only one zero-order bright state per conserved vibrational polyad of the X̃ state. Unfortunately, when the upper level involves excitation in the highly admixed ungerade bending modes, ν4′ and ν6′, the simplifying Franck–Condon propensity rule breaks down--as long as the usual polar basis (with v and l quantum numbers) is used to describe the degenerate bending vibrations of the X̃ state--and the intrapolyad intensities result from complicated interference patterns between many zero-order bright states. In this article, we show that, when the degenerate bending levels are instead treated in the Cartesian two-dimensional harmonic oscillator basis (with vx and vy quantum numbers), the propensity for only one zero-order bright state (in the Cartesian basis) is restored, and the intrapolyad intensities are simple to model, as long as corrections are made for anharmonic interactions. As a result of trans ⇌ cis isomerization in the à state, intrapolyad emission patterns from overtones of ν4′ and ν6′ evolve as quanta of trans bend (ν3′) are added, so the emission intensities are not only relevant to the ground-state acetylene ⇌ vinylidene isomerization, they are also a direct reporter of isomerization in the electronically excited state.

A full-dimensional Franck-Condon calculation has been applied to the à (1)Au-X̃ 1Σg+ transition in acetylene in the harmonic normal mode basis. Details of the calculation are discussed in Part I of this series. To our knowledge, this is the first full-dimensional Franck-Condon calculation on a tetra-atomic molecule undergoing a linear-to-bent geometry change. In the current work, the vibrational intensity factors for levels involving excitation in ungerade vibrational modes are evaluated. Because the Franck-Condon integral accumulates away from the linear geometry, we have been able to treat the out-of-plane component of trans bend (ν4('')) in the linear X̃ state in the rotational part of the problem, restoring the χ Euler angle and the a-axis Eckart conditions. A consequence of the Eckart conditions is that the out-of-plane component of ν4('') does not participate in the vibrational overlap integral. This affects the structure of the coordinate transformation and the symmetry of the vibrational wavefunctions used in the overlap integral, and results in propensity rules involving the bending modes of the X̃ state that were not previously understood. We explain the origin of some of the unexpected propensities observed in IR-UV laser-induced fluorescence spectra, and we calculate emission intensities from bending levels of the à state into bending levels of the X̃ state, using normal bending mode and local bending mode basis sets. Our calculations also reveal Franck-Condon propensities for the Cartesian components of the cis bend (ν5('')), and we predict that the best Ã-state vibrational levels for populating X̃-state levels with large amplitude bending motion localized in a single C-H bond (the acetylene↔vinylidene isomerization coordinate) involve a high degree of excitation in ν6(') (cis-bend). Mode ν4(') (torsion) populates levels with large amplitude counter-rotational motion of the two hydrogen atoms.

Reduced dimension variational calculations have been performed for the rovibrational level structure of the S1 state of acetylene. The state exhibits an unusually complicated level structure, for various reasons. First, the potential energy surface has two accessible conformers, trans and cis. The cis conformer lies about 2700 cm(-1) above the trans, and the barrier to cis-trans isomerization lies about 5000 cm(-1) above the trans minimum. The trans vibrations ν4 (torsion) and ν6 (asym. bend) interact very strongly by Darling-Dennison and Coriolis resonances, such that their combination levels and overtones form polyads with unexpected structures. Both conformers exhibit very large x36 cross-anharmonicity since the pathway to isomerization is a combination of ν6 and ν3 (sym. bend). Near the isomerization barrier, the vibrational levels show an even-odd K-staggering of their rotational levels as a result of quantum mechanical tunneling through the barrier. The present calculations address all of these complications, and reproduce the observed K-structures of the bending and C-C stretching levels with good qualitative accuracy. It is expected that they will assist with the assignment of the irregular patterns near the isomerization barrier.

In the first half of this study, rotational and vibrational constants of six Franck-Condon bright vibrational levels of S1 doubly-substituted (13)C acetylene are determined from laser-induced fluorescence spectra and an updated geometry of the trans conformer of S1 acetylene is obtained. In the second half, we determine the quadratic force field of S1 acetylene on the basis of the harmonic frequencies of four isotopologues of acetylene. The effects of both diagonal and off-diagonal x(ij) anharmonicities are removed from the input harmonic frequencies. Results from both experimental and theoretical studies of various isotopologues of acetylene (including those from the first half of this paper) are used to obtain a set of force constants that agrees well with ab initio calculations. Our set of force constants for S1 acetylene is an improvement over previous work by Tobiason et al., which did not include off-diagonal anharmonicities.

Highly accurate calculations are reported for properties of vinylidene (H2C═C:), specifically the position of its zero-point vibrational level relative to that of acetylene and its equilibrium structure and ground state rotational constants. The isomerization energy of vinylidene calculated at the HEAT-456QP level of theory is 43.53 ± 0.15 kcal mol(-1), in agreement with the previous best estimate, but associated with a much smaller uncertainty. In addition, the thermochemical calculations presented here also allow a determination of the H2CC-H bond energy of the vinyl radical at the HEAT-345(Q) level of theory, which is 77.7 ± 0.3 kcal mol(-1). The equilibrium structure of vinylidene, estimated with an additivity scheme that includes treatment of correlation effects beyond CCSD(T) as well as relativistic and adiabatic (diagonal Born-Oppenheimer correction) contributions, is rCC = 1.2982 ± 0.0003 Å, rCH = 1.0844 ± 0.0003 Å, and θCCH = 120.05 ± 0.05°, with zero-point rotational constants (including vibrational contributions and electronic contributions to the moment of inertia) estimated to be A0 = 9.4925 ± 0.0150 cm(-1), B0 = 1.3217 ± 0.0017 cm(-1), and C0 = 1.1602 ± 0.0016 cm(-1).

Isomerization between the cis and trans conformers of the S(1) state of acetylene is studied using a reduced dimension discrete variable representation (DVR) calculation. Existing DVR techniques are combined with a high accuracy potential energy surface and a kinetic energy operator derived from FG theory to yield an effective but simple Hamiltonian for treating large amplitude motions. The spectroscopic signatures of the S(1) isomerization are discussed, with emphasis on the vibrational aspects. The presence of a low barrier to isomerization causes distortion of the trans vibrational level structure and the appearance of nominally electronically forbidden à (1)A(2)←X̃ (1)Σ(g)(+) transitions to vibrational levels of the cis conformer. Both of these effects are modeled in agreement with experimental results, and the underlying mechanisms of tunneling and state mixing are elucidated by use of the calculated vibrational wavefunctions.

A systematic analysis of the S(1)-trans (Ã(1)A(u)) state of acetylene, using IR-UV double resonance along with one-photon fluorescence excitation spectra, has allowed assignment of at least part of every single vibrational state or polyad up to a vibrational energy of 4200 cm(-1). Four observed vibrational levels remain unassigned, for which no place can be found in the level structure of the trans-well. The most prominent of these lies at 46 175 cm(-1). Its (13)C isotope shift, exceptionally long radiative lifetime, unexpected rotational selection rules, and lack of significant Zeeman effect, combined with the fact that no other singlet electronic states are expected at this energy, indicate that it is a vibrational level of the S(1)-cis isomer (Ã(1)A(2)). Guided by ab initio calculations [J. H. Baraban, A. R. Beck, A. H. Steeves, J. F. Stanton, and R. W. Field, J. Chem. Phys. 134, 244311 (2011)] of the cis-well vibrational frequencies, the vibrational assignments of these four levels can be established from their vibrational symmetries together with the (13)C isotope shift of the 46 175 cm(-1) level (assigned here as cis-3(1)6(1)). The S(1)-cis zero-point level is deduced to lie near 44 900 cm(-1), and the ν(6) vibrational frequency of the S(1)-cis well is found to be roughly 565 cm(-1); these values are in remarkably good agreement with the results of recent ab initio calculations. The 46 175 cm(-1) vibrational level is found to have a 3.9 cm(-1) staggering of its K-rotational structure as a result of quantum mechanical tunneling through the isomerization barrier. Such tunneling does not give rise to ammonia-type inversion doubling, because the cis and trans isomers are not equivalent; instead the odd-K rotational levels of a given vibrational level are systematically shifted relative to the even-K rotational levels, leading to a staggering of the K-structure. These various observations represent the first definite assignment of an isomer of acetylene that was previously thought to be unobservable, as well as the first high resolution spectroscopic results describing cis-trans isomerization.

The combination of emergent RNA interference (RNAi) technology with in ovo electroporation in the chick embryo has the potential to provide a powerful and rapid means for functional analyses of novel genes in vivo. In this study, we show that electroporation of short 21-bp RNA duplexes (siRNAs) is a quick and simple method for silencing exogenous and endogenous gene expression in vivo. Quantitative comparisons with two other RNAi protocols that use long double-stranded RNA duplexes and endonuclease-digested duplexes (esiRNAs) demonstrate that siRNAs are significantly more effective at reducing gene expression. Furthermore, we also find that much higher amounts of siRNA are required for silencing of endogenous gene expression relative to plasmid-borne reporter constructs. In short, these results demonstrate that siRNAs are the most effective type of double-stranded RNA duplex for silencing gene expression and suggest that there might be important differences between silencing endogenous and exogenous genes. Finally, we review the parameters for each of these RNA-based methods of RNAi and the controls required to analyze RNAi data in the context of the developing vertebrate embryo., ((c) 2004 Wiley-Liss, Inc.)