50,483 results on '"Bailey, P."'
Search Results
2. Monitoring Observations of SMC X-1's Excursions (MOOSE) III: X-ray Spectroscopy of a Warped, Precessing Accretion Disc
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Karam, Rawan, Dage, Kristen C., Tetarenko, Bailey E., Brumback, McKinley C., Haggard, Daryl, Bahramian, Arash, Hu, Chin-Ping, Neilsen, Joey, Altamirano, Diego, Athukoralalage, Wasundara, Charles, Philip A., Clarkson, William I., Hickox, Ryan C., and Kennea, Jamie
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
The MOOSE (Monitoring Observations of SMC X-1 Excursions) program uses the Neutron Star Interior Composition Explorer Mission (NICER) to monitor the high mass X-ray binary SMC X-1 during its superorbital period excursions. Here we perform X-ray spectral analyses of 26 NICER observations of SMC X-1, taken at the tail-end of the excursion between 2021-04-01 and 2022-01-05. We use a single spectral model to fit spectra observed in high, intermediate and low states, using a combination of a partial covering fraction model, a black-body disc, and a power-law component. We find that the partial covering fraction varies significantly with the superorbital state during superorbital excursion. Our findings suggest that the low/high state in SMC X-1 is caused by a very high obscuration of the accretion disk., Comment: 10 pages 4 figures, accepted to MNRAS
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- 2024
3. On the Uniqueness of Nash Equilibria in Multiagent Matrix Games
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Bailey, James P.
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Computer Science - Computer Science and Game Theory - Abstract
We provide a complete characterization for uniqueness of equilibria in unconstrained polymatrix games. We show that while uniqueness is natural for coordination and general polymatrix games, zero-sum games require that the dimension of the combined strategy space is even. Therefore, non-uniqueness is common in zero-sum polymatrix games. In addition, we study the impact of non-uniqueness on classical learning dynamics for multiagent systems and show that the classical methods still yield unique estimates even when there is not a unique equilibrium.
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- 2024
4. On the Approximability of the Yolk in the Spatial Model of Voting
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Hu, Ran and Bailey, James P.
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Computer Science - Computer Science and Game Theory - Abstract
In the spatial model of voting, the yolk and LP (linear programming) yolk are important solution concepts for predicting outcomes for a committee of voters. McKelvey and Tovey showed that the LP yolk provides a lower bound approximation for the size of the yolk and there has been considerable debate on whether the LP yolk is a good approximation of the yolk. In this paper, we show that for an odd number of voters in a two-dimensional space that the yolk radius is at most twice the size of the LP yolk radius. However, we also show that (1) even in this setting, the LP yolk center can be arbitrarily far away from the yolk center (relative to the radius of the yolk) and (2) for all other settings (an even number of voters or in dimension $k\geq 3$) that the LP yolk can be arbitrarily small relative to the yolk. Thus, in general, the LP yolk can be an arbitrarily poor approximation of the yolk.
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- 2024
5. Analyzing Wage Theft in Day Labor Markets via Principal Agent Models
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Bailey, James P., Cavdar, Bahar, and Chang, Yanling
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Mathematics - Optimization and Control ,Computer Science - Computer Science and Game Theory ,91B43 - Abstract
In day labor markets, workers are particularly vulnerable to wage theft. This paper introduces a principal-agent model to analyze the conditions required to mitigate wage theft through fines and establishes the necessary and sufficient conditions to reduce theft. We find that the fines necessary to eliminate theft are significantly larger than those imposed by current labor laws, making wage theft likely to persist under penalty-based methods alone. Through numerical analysis, we show how wage theft disproportionately affects workers with lower reservation utilities and observe that workers with similar reservation utilities experience comparable impacts, regardless of their skill levels. To address the limitations of penalty-based approaches, we extend the model to a dynamic game incorporating worker awareness. We prove that wage theft can be fully eliminated if workers accurately predict theft using historical data and employers follow optimal fixed wage strategy. Additionally, sharing wage theft information becomes an effective long-term solution when employers use any given fixed wage strategies, emphasizing the importance of raising worker awareness through various channels.
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- 2024
6. Electronic Structure at the Perovskite Rubrene Interface: The Effect of Surface Termination
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Sloane, Nicholas P., Bailey, Christopher G., Cole, Jared H., Schmidt, Timothy W., McCamey, Dane R., and Klymenko, Mykhailo V.
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Condensed Matter - Materials Science - Abstract
Perovskite films have rapidly emerged as leading active materials in optoelectronic devices due to their strong optical absorption, high carrier mobility and ease of fabrication. Whilst proving to be promising materials for solar cells and light-emitting diodes, another application of perovskites which makes effective use of their unique properties is sensitisation for photon upconversion. Consisting of a bulk perovskite sensitiser alongside an adjacent organic semiconductor film, the upconverting system can absorb multiple low-energy photons to emit high-energy photons. In this work, density functional theory, in conjunction with GW theory, is utilised to investigate the electronic structure at the MAPbI$_3$/rubrene interface for different surface terminations of MAPbI$_3$. From this investigation, we reveal that the surface termination of the perovskite layer greatly affects the charge density at the interface and within the rubrene layer driven by the formation of interfacial dipole layers. The formation of a strong interfacial dipole for the lead-iodide terminated perovskite alters the band alignment of the heterojunction and is expected to facilitate more efficient hole transfer. For the perovskite surface terminated with the methylammonium iodide layer, the highest occupied molecular orbital of the adjacent rubrene layer lies deep within the perovskite band gap. This termination type is further characterized by a lower density of states near the band edges thereby acting as a spacer which is anticipated to decrease the probability of charge transfer across the interface. Thus based on our results, PbI$_2$-terminated perovskite surfaces are predicted to be favourable for applications where hole transfer to a rubrene layer is ideal, highlighting the significance of surface termination for all systems where the electronic environment at the interface is crucial to performance.
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- 2024
7. Long-Time 2D Simulations of Fallback Supernovae: A Systematic Investigation of Explosions Dynamics and Mass Ejections
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Sykes, Bailey and Müller, Bernhard
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Solar and Stellar Astrophysics ,General Relativity and Quantum Cosmology - Abstract
We present a set of eight fallback simulations of zero-metallicity progenitors with masses between $60 M_\odot$ and $95 M_\odot$. The simulations are computed in 2D with the general relativistic CoCoNuT-FMT code for the first few seconds after black hole formation, and then mapped to the Newtonian code Prometheus for long-duration simulations beyond shock breakout. All simulations produce successful explosions with final energies ranging from $0.41 \times 10^{51}$ erg to $2.5 \times 10^{51}$ erg and black hole masses from $20.7 M_\odot$ to $34.4 M_\odot$. Explosion energies and remnant masses do not vary monotonically with progenitor mass, but the mass cuts cluster near the outer edge of the helium core. A supplementary model with decreased neutrino heating provides a tentative indication that successful explosions require the shock to reach the sonic point in the infall profile by the time of black hole formation. The propagation of the shock to the surface is only approximately captured by proposed shock invariants, but these may still be sufficient to extrapolate the final black hole mass from the first seconds of evolution. We also discuss potential multi-messenger signatures of the predicted fallback explosions. The enrichment of the ejecta in intermediate mass and iron-group elements varies considerably and is non-neligible for the more powerful explosions. Low-level neutrino emission after black hole formation from these very massive progenitors may be detectable in the case of a Galactic event., Comment: 20 pages, 15 figures, submitted to MNRAS
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- 2024
8. Can I Pet Your Robot? Incorporating Capacitive Touch Sensing into a Soft Socially Assistive Robot Platform
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O'Connell, Amy, Cislowski, Bailey, Culbertson, Heather, and Matarić, Maja
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Computer Science - Robotics ,Computer Science - Human-Computer Interaction - Abstract
This work presents a method of incorporating low-cost capacitive tactile sensors on a soft socially assistive robot platform. By embedding conductive thread into the robot's crocheted exterior, we formed a set of low-cost, flexible capacitive tactile sensors that do not disrupt the robot's soft, zoomorphic embodiment. We evaluated the sensors' performance through a user study (N=20) and found that the sensors reliably detected user touch events and localized touch inputs to one of three regions on the robot's exterior., Comment: Accepted as a Work-In-Progress submission at the 2024 IEEE Haptics Symposium
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- 2024
9. Permutation groups, partition lattices and block structures
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Anagnostopoulou-Merkouri, Marina, Bailey, R. A., and Cameron, Peter J.
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Mathematics - Group Theory ,Mathematics - Combinatorics ,Mathematics - Statistics Theory ,20B05, 06B99, 62K10 - Abstract
Let $G$ be a transitive permutation group on $\Omega$. The $G$-invariant partitions form a sublattice of the lattice of all partitions of $\Omega$, having the further property that all its elements are uniform (that is, have all parts of the same size). If, in addition, all the equivalence relations defining the partitions commute, then the relations form an \emph{orthogonal block structure}, a concept from statistics; in this case the lattice is modular. If it is distributive, then we have a \emph{poset block structure}, whose automorphism group is a \emph{generalised wreath product}. We examine permutation groups with these properties, which we call the \emph{OB property} and \emph{PB property} respectively, and in particular investigate when direct and wreath products of groups with these properties also have these properties. A famous theorem on permutation groups asserts that a transitive imprimitive group $G$ is embeddable in the wreath product of two factors obtained from the group (the group induced on a block by its setwise stabiliser, and the group induced on the set of blocks by~$G$). We extend this theorem to groups with the PB property, embeddng them into generalised wreath products. We show that the map from posets to generalised wreath products preserves intersections and inclusions. We have included background and historical material on these concepts., Comment: Embedding theorem strengthened
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- 2024
10. HD 222237 b: a long period super-Jupiter around a nearby star revealed by radial-velocity and Hipparcos-Gaia astrometry
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Xiao, Guang-Yao, Feng, Fabo, Shectman, Stephen A., Tinney, C. G., Teske, Johanna K., Carter, B. D., Jones, H. R. A., Wittenmyer, Robert A., Díaz, Matías R., Crane, Jeffrey D., Wang, Sharon X., Bailey, J., O'Toole, S. J., Feinstein, Adina D., Rice, Malena, Essack, Zahra, Montet, Benjamin T., Shporer, Avi, and Butler, R. Paul
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Astrophysics - Earth and Planetary Astrophysics - Abstract
Giant planets on long period orbits around the nearest stars are among the easiest to directly image. Unfortunately these planets are difficult to fully constrain by indirect methods, e.g., transit and radial velocity (RV). In this study, we present the discovery of a super-Jupiter, HD 222237 b, orbiting a star located $11.445\pm0.002$ pc away. By combining RV data, Hipparcos and multi-epoch Gaia astrometry, we estimate the planetary mass to be ${5.19}_{-0.58}^{+0.58}\,M_{\rm Jup}$, with an eccentricity of ${0.56}_{-0.03}^{+0.03}$ and a period of ${40.8}_{-4.5}^{+5.8}$ yr, making HD 222237 b a promising target for imaging using the Mid-Infrared Instrument (MIRI) of JWST. A comparative analysis suggests that our method can break the inclination degeneracy and thus differentiate between prograde and retrograde orbits of a companion. We further find that the inferred contrast ratio between the planet and the host star in the F1550C filter ($15.50\,\mu \rm m$) is approximately $1.9\times10^{-4}$, which is comparable with the measured limit of the MIRI coronagraphs. The relatively low metallicity of the host star ($\rm-0.32\,dex$) combined with the unique orbital architecture of this system presents an excellent opportunity to probe the planet-metallicity correlation and the formation scenarios of giant planets., Comment: 18 pages, 10 figures, 3 tables, accepted for publication in MNRAS
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- 2024
11. Segmenting sea ice floes in close-range optical imagery with active contour and foundation models
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Passerotti, Giulio, Alberello, Alberto, Vichi, Marcello, Bennetts, Luke G., Bailey, James, and Toffoli, Alessandro
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Physics - Atmospheric and Oceanic Physics - Abstract
The size and shape of sea ice floes play a crucial role in influencing ocean-atmosphere energy exchanges, sea ice concentrations, albedo, and wave propagation through ice-covered waters. Despite the availability of diverse image segmentation techniques for analyzing sea ice imagery, accurately detecting and measuring floes remains a considerable challenge. This study presents a precise methodology for in-situ sea ice imagery acquisition, including automated orthorectification to correct perspective distortions. The image dataset, collected during an Antarctic winter expedition, was used to evaluate various automated image segmentation approaches: the traditional GVF Snake algorithm and the advanced deep learning model, Segment Anything Model (SAM). To address the limitations of each method, a hybrid algorithm combining traditional and AI-based techniques is proposed. The effectiveness of these approaches was validated through a detailed analysis of ice floe detection accuracy, floe size, and ice concentration statistics, with the outcomes normalized against a manually segmented benchmark.
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- 2024
12. Simulated performance of energy-resolving detectors towards exoplanet imaging with the Habitable Worlds Observatory
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Steiger, Sarah, Pueyo, Laurent, Por, Emiel H., Chen, Pin, Soummer, Rémi, Pourcelot, Raphaël, Laginja, Iva, and Bailey, Vanessa P.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Earth and Planetary Astrophysics - Abstract
One of the primary science goals of the Habitable Worlds Observatory (HWO) as defined by the Astro2020 decadal survey is the imaging of the first Earth-like planet around a Sun-like star. A key technology gap towards reaching this goal are the development of ultra-low-noise photon counting detectors capable of measuring the incredibly low count rates coming from these planets which are at contrasts of $\sim 1 \times 10^{-10}$. Superconducting energy-resolving detectors (ERDs) are a promising technology for this purpose as, despite their technological challenges, needing to be cooled below their superconducting transition temperature ($< 1\mathrm{K}$), they have essentially zero read noise, dark current, or clock-induced charge, and can get the wavelength of each incident photon without the use of additional throughput-reducing filters or gratings that spread light over many pixels. The use of these detectors on HWO will not only impact the science of the mission by decreasing the required exposure times for exo-Earth detection and characterization, but also in a wavefront sensing and control context when used for starlight suppression to generate a dark zone. We show simulated results using both an EMCCD and an ERD to ``dig a dark zone'' demonstrating that ERDs can achieve the same final contrast as an EMCCD in about half of the total time. We also perform a simple case study using an exposure time calculator tool called the Error Budget Software (EBS) to determine the required integration times to detect water for HWO targets of interest using both EMCCDs and ERDs. This shows that once a dark zone is achieved, using an ERD can decrease these exposure times by factors of 1.5--2 depending on the specific host star properties., Comment: 13 pages, 7 figures
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- 2024
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13. Stellar reddening map from DESI imaging and spectroscopy
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Zhou, Rongpu, Guy, Julien, Koposov, Sergey E., Schlafly, Edward F., Schlegel, David, Aguilar, Jessica, Ahlen, Steven, Bailey, Stephen, Bianchi, David, Brooks, David, Chaussidon, Edmond, Claybaugh, Todd, Dawson, Kyle, de la Macorra, Axel, Dey, Biprateep, Eisenstein, Daniel J., Ferraro, Simone, Font-Ribera, Andreu, Forero-Romero, Jaime E., Gaztañaga, Enrique, Gontcho, Satya Gontcho A, Gutierrez, Gaston, Honscheid, Klaus, Juneau, Stephanie, Kehoe, Robert, Kirkby, David, Kisner, Theodore, Kremin, Anthony, Lambert, Andrew, Landriau, Martin, Guillou, Laurent Le, Levi, Michael E., Li, Ting S., Manera, Marc, Martini, Paul, Meisner, Aaron, Miquel, Ramon, Moustakas, John, Myers, Adam D., Newman, Jeffrey A., Niz, Gustavo, Palanque-Delabrouille, Nathalie, Percival, Will J., Poppett, Claire, Prada, Francisco, Raichoor, Anand, Ross, Ashley J., Rossi, Graziano, Sanchez, Eusebio, Saydjari, Andrew K., Schubnell, Michael, Sprayberry, David, Tarl, Gregory, Weaver, Benjamin A., Zarrouk, Pauline, and Zou, Hu
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We present new Galactic reddening maps of the high Galactic latitude sky using DESI imaging and spectroscopy. We directly measure the reddening of 2.6 million stars by comparing the observed stellar colors in $g-r$ and $r-z$ from DESI imaging with the synthetic colors derived from DESI spectra from the first two years of the survey. The reddening in the two colors is on average consistent with the \cite{fitzpatrick_correcting_1999} extinction curve with $R_\mathrm{V}=3.1$. We find that our reddening maps differ significantly from the commonly used \cite{schlegel_maps_1998} (SFD) reddening map (by up to 80 mmag in $E(B-V)$), and we attribute most of this difference to systematic errors in the SFD map. To validate the reddening map, we select a galaxy sample with extinction correction based on our reddening map, and this yields significantly better uniformity than the SFD extinction correction. Finally, we discuss the potential systematic errors in the DESI reddening measurements, including the photometric calibration errors that are the limiting factor on our accuracy. The $E(g-r)$ and $E(g-r)$ maps presented in this work, and for convenience their corresponding $E(B-V)$ maps with SFD calibration, are publicly available., Comment: Submitted to the Open Journal of Astrophysics. Associated data files: https://data.desi.lbl.gov/public/papers/mws/desi_dust/y2/v1/maps/
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- 2024
14. Counting points on character varieties
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Kamgarpour, Masoud, Nam, GyeongHyeon, Whitbread, Bailey, and Giannini, Stefano
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Mathematics - Algebraic Geometry ,Mathematics - Representation Theory - Abstract
We count points on the character varieties associated with punctured surfaces and regular semisimple generic conjugacy classes in reductive groups. We find that the number of points are palindromic polynomials. This suggests a $P=W$ conjecture for these varieties. We also count points on the corresponding additive character varieties and find that the number of points are also polynomials, which we conjecture have non-negative coefficients. These polynomials can be considered as the reductive analogues of the Kac polynomials of comet-shaped quivers.
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- 2024
15. The Effects of the Great Depression on Children's Intergenerational Mobility
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Martha J. Bailey, Peter Z. Lin, A. R. Shariq Mohamm, and Alexa Prettyman
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This article examines the role of the Great Depression in shaping the intergenerational mobility of some of the most upwardly mobile cohorts of the twentieth century. Using newly linked census and vital records from the Longitudinal, Intergenerational Family Electronic Micro-database, we examine the occupational and educational mobility of more than 265,000 sons and daughters born in Ohio and North Carolina. We find that the deepest and most protracted downturn in U.S. history had limited effects on sons' intergenerational mobility but reduced daughters' intergenerational mobility.
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- 2024
16. Examining Feminist Pedagogy from the Perspective of Transformative Learning: Do Race and Gender Matter in Feminist Classrooms?
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Mitsunori Misawa and Juanita Johnson-Bailey
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Although feminist pedagogy has been widely used as a teaching approach in classrooms in higher education to enhance diversity, issues of race and gender are often areas of contestations for non-White faculty. The purpose of this study was to explore how non-White professors, a Black woman tenured full professor and a gay Asian male pre-tenured professor, co-created a feminist classroom and how they negotiated power in that classroom environment. The research questions that guided this study were: 1) what does a feminist classroom look like in higher education; 2) how does the intersection of race and gender influence feminist pedagogy; and 3) what strategies do adult educators and practitioners use to deal with disoriented dilemmas? This research progressed into a longitudinal study, focusing on how the faculty members' praxes grew from critical classroom incidents that the professors believed directly related the negative reactions from students to their positionalities as a Black woman and an Asian man. Three themes emerged from the data: a) Confrontation, b) Resistance, and c) Hostility. Each of these themes are defined and presented through direct quotes from our teaching logs and students' reflections. Discussion and implications for practice are also provided regarding how race and gender matter in feminist classrooms. The concluding section describes how the two faculty members implemented reflective practices in higher education to create feminist classrooms.
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- 2024
17. 'What Makes ChatGPT Dangerous Is Also What Makes It Special': High-School Student Perspectives on the Integration or Ban of Artificial Intelligence in Educational Contexts
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Tolulope Famaye, Cinamon Sunrise Bailey, Ibrahim Adisa, and Golnaz Arastoopour Irgens
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The emergence of ChatGPT, an AI-powered language model, has sparked numerous debates and discussions. In educational research, scholars have raised significant questions regarding the potential, limitations, and ethical concerns around the use of this technology. While research on the application and implications of ChatGPT in academic settings exists, analysis of the perspectives of high-school students are limited. In this study, we use qualitative content analysis to explore the perspectives of high-school students regarding the integration or ban of ChatGPT in their schools through the lens of the Technology Acceptance Model (TAM2). Data was sourced from students' comments to a New York Times Learning Network article. Findings revealed that students' perceptions about integrating or banning ChatGPT in schools are influenced by their assessments of the technology's usefulness, personal experiences, societal technology trends, and ethical considerations. Our findings suggest that student perspectives in this study align with those of educators and policymakers while also possessing unique perspectives that cater to their specific needs and experiences. Implications emphasize the significance of an inclusive decision-making process around the integration of AI schools in educational contexts, including students alongside other stakeholders.
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- 2024
18. Against Artificial Education: Towards an Ethical Framework for Generative Artificial Intelligence (AI) Use in Education
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Andrew Swindell, Luke Greeley, Antony Farag, and Bailey Verdone
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The arrival of generative artificial intelligence (AI) is fundamentally different from prior technologies used in educational settings. Educators and researchers of online, blended, and in-person learning are still coming to grips with how to employ current AI technologies in the learning experience, let alone understanding the potential consequences that future and unknown developments in AI will produce. Despite potential risks, AI may revolutionize previous models of teaching and learning, and perhaps create opportunities to realize progressive educational goals. Given the longstanding tradition of using philosophy to examine questions surrounding ethics, ontology, technology, and education, the purpose of this critical reflection paper is to draw from prominent philosophers across these disciplines to address the question: how can AI be employed in future educational contexts in a humanizing and ethical manner? Drawing from the work of Gunther Anders, Michel Foucault, Paolo Freire, Benjamin Bloom, and Hannah Arendt, we propose a framework for assessing the use and ethics of AI in modern education contexts regarding human versus AI generated textual and multimodal content, and the broader political, social, and cultural implications. We conclude with applied examples of the framework and implications for future research and practice.
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- 2024
19. Civic Engagement as a Course-Level Strategy for Integrative Learning
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Maia F. Bailey and Julia M. Camp
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Engaged learning seeks to cultivate integrative approaches that require students to use multiple points of view or approaches in their coursework. Similarly, civically engaged courses ask students to consider public problems that involve multiple stakeholders, institutions, and policies. We are interested in whether courses designed to meet civic engagement goals might also improve student self-assessment of integrative learning at our institution and could serve as a developmental step toward more holistic strategies. To test our hypothesis that student participation in civic engagement would improve student self-assessment of integrative learning, we compared summative student survey scores from students enrolled in similar courses with and without a civic engagement component (n = 275). Boxplot and statistical analysis (unpaired two-sample Wilcoxon test) were used to determine if civic engagement pedagogy made any meaningful impact on integrative learning. Our results show strong overall improvement in survey scores after civic engagement courses.
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- 2024
20. The Effectiveness of an Online Training Module for Pre-Service and In-Service Teachers: A Case Study
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Areej ElSayary, Jenny Eppard, Laila Mohebi, Fatima Bailey, and Hanada Thomure
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This study aims to understand the effectiveness of online training for pre-service and in-service teachers by exploring any differences between pre-service and in-service teachers' satisfaction and learning following an online professional training video. Additionally, the study focused on evaluating any differences in satisfaction and learning of pre-service and in-service teachers based on age, experience, subject taught, and grade level, as well as nationality. An online 20-minute video session was shown to the participants and a survey questionnaire, based on the Kirkpatrick Model, was used to explore their reactions and learning. The study employed Exploratory Factor Analysis (EFA) with independent sample t-test and ANOVA techniques to compare the training outcomes in pre-service and in-service teachers' satisfaction and learning. The results showed that the teachers were highly satisfied with the video assessment, content, and content structure. Moreover, there was no significant difference found in satisfaction levels or learning between in-service and pre-service teachers. Furthermore, no impact of age, experience, grade taught, or subject taught was found, though nationality was found to impact satisfaction with the video. The study recommends the expansion of similar online professional development programs, considering the high levels of satisfaction among pre-service and in-service teachers alike. Personalization of content to accommodate diverse learner needs, learning preferences, and backgrounds is suggested to further enhance satisfaction and learning outcomes. Lastly, this study's findings emphasize the need to improve teacher training programs, especially in different geographic and cultural contexts, to increase teaching efficacy and address the unique challenges teachers face.
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- 2024
21. Student Perspectives of Success and Failure in Biology Lecture: Multifaceted Definitions and Misalignments
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Bailey M. Von der Mehden, Kurisma Waller, and Elisabeth E. Schussler
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Investigating definitions of success and failure among introductory biology students is essential for understanding what underlies their self-efficacy; a student who gets a B on an exam may lose self-efficacy if they define failure as anything less than an A. Yet, whether students have the same definitions for success as they have for failure in these classes is unknown, nor how those definitions relate to course performance. To better understand student definitions for success and failure and their implications, this mixed-methods study collected survey data from students in two introductory biology courses about their definitions of success and failure and their self-reported grades. Coding of open-ended responses revealed four broad themes related to both success and failure: Performance, Content, Preparation, and Attitude. Although there were common themes in how students defined success and failure overall, individual students often (65%) described success or failure in relation to different standards. We also found some definitions of success and failure were predicted by grades. These results highlight the complexity of building self-efficacy in introductory biology and suggest the need for greater awareness and acknowledgment of the different standards students use to judge their success and failure.
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- 2024
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22. An Exploration of Spatial Visualization Skills: Investigating Students' Use of 3D Models in Science Problems during Think-Aloud Interviews
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Sarah N. Abdo, Jeremy L. Hsu, Constantine Kapetanakis, Dina L. Newman, L. Kate Wright, and Jennifer Bailey
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Effective spatial visualization and reasoning skills are often credited for students' success in science and engineering courses. However, students enrolled in these science courses are not always exposed to or trained properly on the best ways to utilize models to aid in their learning. Improving spatial visualization techniques with 3D models, such as molecular and DNA modeling kits, is often suggested to facilitate students' ability to conceptualize compounds in two and three dimensions. Here, we investigate what techniques students use to conceptualize 2D representations of various biomolecules with the use of 3D models by interviewing undergraduate students from various natural science and engineering disciplines in task-based, think-aloud sessions. After scoring and analyzing the participant data we explored some of the techniques used among successful scoring participants, including the use of informal models to transition between 2D and 3D. Additional techniques used by students who were able to successfully conceptualize 3D images included starting with smaller, granular details to inductively make conclusions when thinking between two and three dimensions. We find that (1) students who anchor their thinking in 3D models show a deeper level of understanding in initially solving science problems successfully, and (2) proper 3D model use and spatial visualization techniques may improve students' abilities to accurately visualize 2D and 3D representations of molecules in science courses. Our results demonstrate that implementing spatial visualization training to teach students how to effectively use 3D models may improve students' problem-solving techniques in science curricula.
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- 2024
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23. Preschool Language Environments and Social Interactions in an Early Intervention Classroom: A Pilot Study
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Stephanie A. Custode, Jhonelle Bailey, Lei Sun, Lynne Katz, MaryAnne Ullery, Daniel Messinger, Rebecca J. Bulotsky-Shearer, and Lynn K. Perry
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Preschoolers' language abilities are associated with their social interactions in early childhood classrooms. Few studies, however, have examined associations between social interactions and objective measures of children's real-time classroom language environments, information key to informing interventions to support preschool children at risk for language delays. In this pilot study, we examined associations between objective measures of real-time language environments (input and output) recorded via the Language ENvironment Analysis (LENA) system and observations of children's positive and negative interactions with peers and teachers in an early intervention classroom for children with developmental delays (n = 9, seven girls). Mixed effects regression models revealed associations between children's language environments (input and output) and their social interactions with peers and teachers. More talkative children were more likely to have a high number of positive peer interactions. Children who received more language input from teachers were more likely to have a higher number of positive teacher--child interactions, an effect that was stronger for children with the lowest language output. The results of this pilot study build on prior research by using real-time objective measurement to examine how children's language input from peers and teachers and children's own language output supports positive interactions within early intervention classrooms.
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- 2024
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24. Molecular mechanism of contactin 2 homophilic interaction
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Fan, Shanghua, Liu, Jianfang, Chofflet, Nicolas, Bailey, Aaron O, Russell, William K, Zhang, Ziqi, Takahashi, Hideto, Ren, Gang, and Rudenko, Gabby
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Biochemistry and Cell Biology ,Biological Sciences ,1.1 Normal biological development and functioning ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Protein Binding ,Protein Multimerization ,Cryoelectron Microscopy ,Contactin 2 ,Models ,Molecular ,Binding Sites ,HEK293 Cells ,adhesion molecule ,contactins ,cross-linking mass spectrometry ,cryo-EM ,molecular recognition mechanism ,molecular specificity ,neuronal guidance molecule ,protein structure ,protein:protein interaction ,single-particle analysis ,Biophysics - Abstract
Contactin 2 (CNTN2) is a cell adhesion molecule involved in axon guidance, neuronal migration, and fasciculation. The ectodomains of CNTN1-CNTN6 are composed of six Ig domains (Ig1-Ig6) and four FN domains. Here, we show that CNTN2 forms transient homophilic interactions (KD ∼200 nM). Cryo-EM structures of full-length CNTN2 and CNTN2_Ig1-Ig6 reveal a T-shaped homodimer formed by intertwined, parallel monomers. Unexpectedly, the horseshoe-shaped Ig1-Ig4 headpieces extend their Ig2-Ig3 tips outwards on either side of the homodimer, while Ig4, Ig5, Ig6, and the FN domains form a central stalk. Cross-linking mass spectrometry and cell-based binding assays confirm the 3D assembly of the CNTN2 homodimer. The interface mediating homodimer formation differs between CNTNs, as do the homophilic versus heterophilic interaction mechanisms. The CNTN family thus encodes a versatile molecular platform that supports a very diverse portfolio of protein interactions and that can be leveraged to strategically guide neural circuit development.
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- 2024
25. A mixed methods study to inform fatal overdose prevention in San Diego, California: perspectives from people who use drugs
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Bailey, Katie, Schecter, Arielle, H. Eger, William, "CJ" Justin Valasek, Chad, A. Strathdee, Steffanie, Knox, Amy, Harvey-Vera, Alicia, F. Vera, Carlos, M. Goldenberg, Shira, Robertson Bazzi, Angela, and J. Davidson, Peter
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Naloxone ,overdose prevention ,people who use drugs ,harm reduction - Abstract
Background: In the United States, community overdose education and naloxone distribution (OEND) programs have demonstrated efficacy in reducing opioid-related mortality. OEND programs have expanded across San Diego County, California, but differential naloxone accessibility among people who use drugs (PWUD) has not been assessed. We examined factors that shape individual naloxone accessibility in San Diego.Methods: We employed a convergent parallel mixed methods design using surveys (n=194) and qualitative interviews (n=20). Ordinal logistic regression examined factors associated with personal naloxone accessibility (i.e., the frequency with which participants could access naloxone within five minutes, categorized as never, sometimes, or always). Qualitative interviews explored participant perceptions of naloxone accessibility and whether and how they maintained naloxone. We organized multilevel findings into a modified social-ecological model.Results: In quantitative and qualitative samples, participants were majority male (72% and 70% respectively), non-White race/ethnicity (55% and 75%), with an average age around 42 years. In the quantitative sample, 24% never had personally accessible naloxone, 52% sometimes did, and 24% always did. Factors independently associated with greater personal naloxone accessibility were female gender (Adjusted Odds Ratio [AdjOR]: 2.51, 95% Confidence Interval [CI]: 1.31–4.85), monthly income
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- 2024
26. Incorporating Design Based Implementation Research with a Randomized Controlled Trial to develop and evaluate the efficacy of playful rational number learning
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Begolli, Kreshnik N, Bermudez, Vanessa N, Lawrence, LuEttaMae, Acevedo-Farag, Lourdes M, Valdez, Sabrina V, Santana, Evelyn, Alvarez-Vargas, Daniela, Ahn, June, Bailey, Drew, Rhodes, Katherine, Richland, Lindsey E, and Bustamante, Andres S
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Education ,Specialist Studies In Education ,Clinical Trials and Supportive Activities ,Clinical Research ,Quality Education ,Rational numbers ,Playful learning ,Co -design ,Randomized control trials ,Math cognition ,Specialist Studies in Education ,Psychology ,Specialist studies in education ,Applied and developmental psychology - Abstract
We combine design-based implementation research with a pre-registered RCT to address a long-standing challenge in psychological science: How to use psychological principles to address real-world problems while designing and implementing interventions in the field. We posit this as a design methodology for optimizing the translation between psychological science and real-world applications. We tested the efficacy of an extensively co-designed version of a game-based rational number intervention, Fraction Ball, versus “business-as-usual” math instruction and physical education in a sample of 4th/5th grade Latine students (N = 360). Insights from nine co-design sessions with 20 teachers informed revisions and additions to a previous version of Fraction Ball, strengthening impacts across 10 of 12 rational number subtests. This methodology provides insights for translating psychological science research and scaling it to address real-world educational needs, such as play-based interventions that improve rational number understanding in authentic contexts.
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- 2024
27. Archetype-based Redshift Estimation for the Dark Energy Spectroscopic Instrument Survey
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Anand, Abhijeet, Guy, Julien, Bailey, Stephen, Moustakas, John, Aguilar, J, Ahlen, S, Bolton, AS, Brodzeller, A, Brooks, D, Claybaugh, T, Cole, S, de la Macorra, A, Dey, Biprateep, Fanning, K, Forero-Romero, JE, Gaztañaga, E, Gontcho, S Gontcho A, Gutierrez, G, Honscheid, K, Howlett, C, Juneau, S, Kirkby, D, Kisner, T, Kremin, A, Lambert, A, Landriau, M, Le Guillou, L, Manera, M, Meisner, A, Miquel, R, Mueller, E, Niz, G, Palanque-Delabrouille, N, Percival, WJ, Poppett, C, Prada, F, Raichoor, A, Rezaie, M, Rossi, G, Sanchez, E, Schlafly, EF, Schlegel, D, Schubnell, M, Sprayberry, D, Tarlé, G, Warner, C, Weaver, BA, Zhou, R, and Zou, H
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Particle and High Energy Physics ,Astronomical Sciences ,Physical Sciences ,Affordable and Clean Energy ,Astronomical and Space Sciences ,Astronomy & Astrophysics ,Astronomical sciences ,Particle and high energy physics - Abstract
We present a computationally efficient galaxy archetype-based redshift estimation and spectral classification method for the Dark Energy Survey Instrument (DESI) survey. The DESI survey currently relies on a redshift fitter and spectral classifier using a linear combination of principal component analysis-derived templates, which is very efficient in processing large volumes of DESI spectra within a short time frame. However, this method occasionally yields unphysical model fits for galaxies and fails to adequately absorb calibration errors that may still be occasionally visible in the reduced spectra. Our proposed approach improves upon this existing method by refitting the spectra with carefully generated physical galaxy archetypes combined with additional terms designed to absorb data reduction defects and provide more physical models to the DESI spectra. We test our method on an extensive data set derived from the survey validation (SV) and Year 1 (Y1) data of DESI. Our findings indicate that the new method delivers marginally better redshift success for SV tiles while reducing catastrophic redshift failure by 10%-30%. At the same time, results from millions of targets from the main survey show that our model has relatively higher redshift success and purity rates (0.5%-0.8% higher) for galaxy targets while having similar success for QSOs. These improvements also demonstrate that the main DESI redshift pipeline is generally robust. Additionally, it reduces the false-positive redshift estimation by 5%−40% for sky fibers. We also discuss the generic nature of our method and how it can be extended to other large spectroscopic surveys, along with possible future improvements.
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- 2024
28. Reverse total shoulder arthroplasty with proximal bone loss: a biomechanical comparison of partially vs. fully cemented humeral stems
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Maturana, Carlos, Peterson, Brandon, Shi, Brendan, Mooney, Bailey, Clites, Tyler, and Kremen, Thomas J
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Biomedical and Clinical Sciences ,Clinical Sciences ,Osteoporosis ,Bioengineering ,Assistive Technology ,Humans ,Arthroplasty ,Replacement ,Shoulder ,Biomechanical Phenomena ,Humerus ,Cadaver ,Aged ,Prosthesis Design ,Shoulder Prosthesis ,Female ,Bone Cements ,Male ,Cementation ,Shoulder Joint ,Aged ,80 and over ,Polymethyl Methacrylate ,Reverse total shoulder arthroplasty ,humeral stems ,implant subsidence ,shoulder biomechanics ,proximal humerus fracture ,bone cement ,Orthopedics ,Clinical sciences - Abstract
BackgroundThe appropriate amount of cementation at the time of reverse total shoulder arthroplasty with significant proximal bone loss or resection is unknown. Extensive cementation of a humeral prosthesis makes eventual revision arthroplasty more challenging, increasing the risk of periprosthetic fracture. We analyzed the degree of subsidence and torque tolerance of humeral components undergoing standard cementation technique vs. our reduced polymethyl methacrylate (PMMA) protocol. Reduced cementation may provide sufficient biomechanical stability to resist physiologically relevant loads, while still permitting a clinically attainable torque for debonding the prosthesis.MethodsA total of 12 cadaveric humeri (6 matched pairs) underwent resection of 5 cm of bone distal to the greater tuberosity. Each pair of humeri underwent standard humeral arthroplasty preparation followed by either cementation using a 1.5-cm PMMA sphere at a location 3 cm inferior to the porous coating or standard full stem cementation. A 6-degree-of-freedom robot was used to perform all testing. Each humeral sample underwent 200 cycles of abduction, adduction, and forward elevation while being subjected to a physiologic compression force. Next, the samples were fixed in place and subjected to an increasing torque until implant-cement separation or failure occurred. Paired t tests were used to compare mean implant subsidence vs. a predetermined 5-mm threshold, as well as removal torque in matched samples.ResultsFully and partially cemented implants subsided 0.49 mm (95% CI 0.23-0.76 mm) and 1.85 mm (95% CI 0.41-3.29 mm), respectively, which were significantly less than the predetermined 5-mm threshold (P
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- 2024
29. Improving impact assessments to reduce impacts of deep-sea fisheries on vulnerable marine ecosystems
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Kaikkonen, Laura, Amaro, Teresa, Auster, Peter J, Bailey, David M, Bell, James B, Brandt, Angelika, Clark, Malcolm R, Drazen, Jeffrey C, Du Preez, Cherisse, Escobar-Briones, Elva, Giacomello, Eva, Gianni, Matthew, Johnson, Andrew F, Levin, Lisa A, Milligan, Rosanna J, Oduware, Stephen, Pearman, Tabitha RR, Pham, Christopher K, Ramalho, Sofia P, Rowden, Ashley A, Sutton, Tracey T, Taylor, Michelle L, Watling, Les, and Victorero, Lissette
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Environmental Sciences ,Environmental Management ,Life Below Water ,Environmental Science and Management ,Political Science ,Law ,Fisheries ,Environmental management ,Policy and administration ,Political science - Published
- 2024
30. Roles of Tubulin Concentration during Prometaphase and Ran-GTP during Anaphase of Caenorhabditis elegans Meiosis
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Gong, Ting, McNally, Karen L, Konanoor, Siri, Peraza, Alma, Bailey, Cynthia, Redemann, Stefanie, and McNally, Francis J
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Biochemistry and Cell Biology ,Biological Sciences ,Genetics ,Generic health relevance ,Animals ,Caenorhabditis elegans ,Tubulin ,Spindle Apparatus ,Anaphase ,Caenorhabditis elegans Proteins ,Oocytes ,Prometaphase ,Meiosis ,ran GTP-Binding Protein ,Guanosine Triphosphate ,Chromatin ,Chromosome Segregation ,Biological sciences ,Biomedical and clinical sciences - Abstract
In many animal species, the oocyte meiotic spindle, which is required for chromosome segregation, forms without centrosomes. In some systems, Ran-GEF on chromatin initiates spindle assembly. We found that in Caenorhabditis elegans oocytes, endogenously-tagged Ran-GEF dissociates from chromatin during spindle assembly but re-associates during meiotic anaphase. Meiotic spindle assembly occurred after auxin-induced degradation of Ran-GEF, but anaphase I was faster than controls and extrusion of the first polar body frequently failed. In search of a possible alternative pathway for spindle assembly, we found that soluble tubulin concentrates in the nuclear volume during germinal vesicle breakdown. We found that the concentration of soluble tubulin in the metaphase spindle region is enclosed by ER sheets which exclude cytoplasmic organelles including mitochondria and yolk granules. Measurement of the volume occupied by yolk granules and mitochondria indicated that volume exclusion would be sufficient to explain the concentration of tubulin in the spindle volume. We suggest that this concentration of soluble tubulin may be a redundant mechanism promoting spindle assembly near chromosomes.
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- 2024
31. Winning Lights Out with Fibonacci
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Arangala, Crista, Bailey, Stephen, and Mazur, Kristen
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Mathematics - History and Overview - Abstract
Lights Out is a single-player electronic handheld game from the 1990s that features a 5 by 5 grid of light-up buttons. The game begins with some lights on and others off. The goal is to turn off all lights but pressing a button changes its state and changes the states of the buttons above and below and to the left and right of the button. We examine a cylindrical Lights Out game in which the left side of the board is connected to the right. Moreover, instead of just on and off we let the lights have $k$ states for $k \ge 2$. We then apply a modified light chasing strategy in which we try to systematically turn off all lights in a row by pressing the buttons in the row below. We ask if the game begins with all lights starting at the same state, how many rows must the board have in order for all lights to be turned off using this type of modified light chasing after we press the last row of lights. We connect this light chasing strategy to the Fibonacci numbers and are able to provide answer to our question by studying the Fibonacci numbers (mod $k$).
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- 2024
32. The Impact from Galaxy Groups on Cosmological Measurements with Type Ia Supernovae
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Peterson, Erik R., Carreres, Bastien, Carr, Anthony, Scolnic, Daniel, Bailey, Ava, Davis, Tamara M., Brout, Dillon, Howlett, Cullan, Jones, David O., Riess, Adam G., Said, Khaled, and Taylor, Georgie
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
At the low-redshift end ($z<0.05$) of the Hubble diagram with Type Ia Supernovae (SNe Ia), the contribution to Hubble residual scatter from peculiar velocities is of similar size to that due to the standardization of the SN Ia light curve. A way to improve the redshift measurement of the SN host galaxy is to utilize the average redshift of the galaxy group, effectively averaging over small-scale/intracluster peculiar velocities. One limiting factor is the fraction of SN host galaxies in galaxy groups, previously found to be 30% using (relatively incomplete) magnitude-limited galaxy catalogs. Here, we do the first analysis of N-body simulations to predict this fraction, finding $\sim$66% should have associated groups and group averaging should improve redshift precision by $\sim$120 km s$^{-1}$. Furthermore, using spectroscopic data from the Anglo-Australian Telescope, we present results from the first pilot program to evaluate whether or not 23 previously unassociated SN Ia hosts belong in groups. We find that 91% of these candidates can be associated with groups, consistent with predictions from simulations given the sample size. Combining with previously assigned SN host galaxies in Pantheon+, we demonstrate improvement in Hubble residual scatter equivalent to 145 km s$^{-1}$, also consistent with simulations. For new and upcoming low-$z$ samples from, for example, the Zwicky Transient Facility and the Rubin Observatory's Legacy Survey of Space and Time, a separate follow-up program identifying galaxy groups of SN hosts is a highly cost-effective way to enhance their constraining power., Comment: 17 pages, 12 figures. Submitted to ApJ
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- 2024
33. Detection of the large-scale tidal field with galaxy multiplet alignment in the DESI Y1 spectroscopic survey
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Lamman, Claire, Eisenstein, Daniel, Forero-Romero, Jaime E., Aguilar, Jessica Nicole, Ahlen, Steven, Bailey, Stephen, Bianchi, Davide, Brooks, David, Claybaugh, Todd, de la Macorra, Axel, Doel, Peter, Ferraro, Simone, Font-Ribera, Andreu, Gaztañaga, Enrique, Gontcho, Satya Gontcho A, Gutierrez, Gaston, Honscheid, Klaus, Howlett, Cullan, Kremin, Anthony, Lambert, Andrew, Landriau, Martin, Guillou, Laurent Le, Levi, Michael E., Meisner, Aaron, Miquel, Ramon, Moustakas, John, Newman, Jeffrey A., Niz, Gustavo, Prada, Francisco, Pérez-Ràfols, Ignasi, Ross, Ashley J., Rossi, Graziano, Sanchez, Eusebio, Schubnell, Michael, Sprayberry, David, Tarlé, Gregory, Vargas-Magaña, Mariana, Weaver, Benjamin Alan, and Zou, Hu
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We explore correlations between the orientations of small galaxy groups, or "multiplets", and the large-scale gravitational tidal field. Using data from the Dark Energy Spectroscopic Instrument (DESI) Y1 survey, we detect the intrinsic alignment (IA) of multiplets to the galaxy-traced matter field out to separations of 100 Mpc/h. Unlike traditional IA measurements of individual galaxies, this estimator is not limited by imaging of galaxy shapes and allows for direct IA detection beyond redshift z = 1. Multiplet alignment is a form of higher-order clustering, for which the scale-dependence traces the underlying tidal field and amplitude is a result of small-scale (< 1 Mpc/h) dynamics. Within samples of bright galaxies (BGS), luminous red galaxies (LRG) and emission-line galaxies (ELG), we find similar scale-dependence regardless of intrinsic luminosity or colour. This is promising for measuring tidal alignment in galaxy samples that typically display no intrinsic alignment. DESI's LRG mock galaxy catalogues created from the AbacusSummit N-body simulations produce a similar alignment signal, though with a 33% lower amplitude at all scales. An analytic model using a non-linear power spectrum (NLA) only matches the signal down to 20 Mpc/h. Our detection demonstrates that galaxy clustering in the non-linear regime of structure formation preserves an interpretable memory of the large-scale tidal field. Multiplet alignment complements traditional two-point measurements by retaining directional information imprinted by tidal forces, and contains additional line-of-sight information compared to weak lensing. This is a more effective estimator than the alignment of individual galaxies in dense, blue, or faint galaxy samples., Comment: For an accessible summary of this paper, see https://cmlamman.github.io/doc/multipletIA_summary.pdf
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- 2024
34. Personhood credentials: Artificial intelligence and the value of privacy-preserving tools to distinguish who is real online
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Adler, Steven, Hitzig, Zoë, Jain, Shrey, Brewer, Catherine, Chang, Wayne, DiResta, Renée, Lazzarin, Eddy, McGregor, Sean, Seltzer, Wendy, Siddarth, Divya, Soliman, Nouran, South, Tobin, Spelliscy, Connor, Sporny, Manu, Srivastava, Varya, Bailey, John, Christian, Brian, Critch, Andrew, Falcon, Ronnie, Flanagan, Heather, Duffy, Kim Hamilton, Ho, Eric, Leibowicz, Claire R., Nadhamuni, Srikanth, Rozenshtein, Alan Z., Schnurr, David, Shapiro, Evan, Strahm, Lacey, Trask, Andrew, Weinberg, Zoe, Whitney, Cedric, and Zick, Tom
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Computer Science - Computers and Society - Abstract
Anonymity is an important principle online. However, malicious actors have long used misleading identities to conduct fraud, spread disinformation, and carry out other deceptive schemes. With the advent of increasingly capable AI, bad actors can amplify the potential scale and effectiveness of their operations, intensifying the challenge of balancing anonymity and trustworthiness online. In this paper, we analyze the value of a new tool to address this challenge: "personhood credentials" (PHCs), digital credentials that empower users to demonstrate that they are real people -- not AIs -- to online services, without disclosing any personal information. Such credentials can be issued by a range of trusted institutions -- governments or otherwise. A PHC system, according to our definition, could be local or global, and does not need to be biometrics-based. Two trends in AI contribute to the urgency of the challenge: AI's increasing indistinguishability from people online (i.e., lifelike content and avatars, agentic activity), and AI's increasing scalability (i.e., cost-effectiveness, accessibility). Drawing on a long history of research into anonymous credentials and "proof-of-personhood" systems, personhood credentials give people a way to signal their trustworthiness on online platforms, and offer service providers new tools for reducing misuse by bad actors. In contrast, existing countermeasures to automated deception -- such as CAPTCHAs -- are inadequate against sophisticated AI, while stringent identity verification solutions are insufficiently private for many use-cases. After surveying the benefits of personhood credentials, we also examine deployment risks and design challenges. We conclude with actionable next steps for policymakers, technologists, and standards bodies to consider in consultation with the public., Comment: 63 pages, 7 figures, 5 tables; minor additions to acknowledgments and wording changes for clarity; corrected typo
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- 2024
35. Learned Indexes with Distribution Smoothing via Virtual Points
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Amarasinghe, Kasun, Choudhury, Farhana, Qi, Jianzhong, and Bailey, James
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Computer Science - Databases - Abstract
Recent research on learned indexes has created a new perspective for indexes as models that map keys to their respective storage locations. These learned indexes are created to approximate the cumulative distribution function of the key set, where using only a single model may have limited accuracy. To overcome this limitation, a typical method is to use multiple models, arranged in a hierarchical manner, where the query performance depends on two aspects: (i) traversal time to find the correct model and (ii) search time to find the key in the selected model. Such a method may cause some key space regions that are difficult to model to be placed at deeper levels in the hierarchy. To address this issue, we propose an alternative method that modifies the key space as opposed to any structural or model modifications. This is achieved through making the key set more learnable (i.e., smoothing the distribution) by inserting virtual points. Furthermore, we develop an algorithm named CSV to integrate our virtual point insertion method into existing learned indexes, reducing both their traversal and search time. We implement CSV on state-of-the-art learned indexes and evaluate them on real-world datasets. Extensive experimental results show significant query performance improvement for the keys in deeper levels of the index structures at a low storage cost.
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- 2024
36. Graphical Modelling without Independence Assumptions for Uncentered Data
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Andrew, Bailey, Westhead, David R., and Cutillo, Luisa
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Statistics - Methodology ,Statistics - Machine Learning - Abstract
The independence assumption is a useful tool to increase the tractability of one's modelling framework. However, this assumption does not match reality; failing to take dependencies into account can cause models to fail dramatically. The field of multi-axis graphical modelling (also called multi-way modelling, Kronecker-separable modelling) has seen growth over the past decade, but these models require that the data have zero mean. In the multi-axis case, inference is typically done in the single sample scenario, making mean inference impossible. In this paper, we demonstrate how the zero-mean assumption can cause egregious modelling errors, as well as propose a relaxation to the zero-mean assumption that allows the avoidance of such errors. Specifically, we propose the "Kronecker-sum-structured mean" assumption, which leads to models with nonconvex-but-unimodal log-likelihoods that can be solved efficiently with coordinate descent., Comment: 7 pages (13 counting refs & appendix), 7 figures, 1 table
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- 2024
37. Making Multi-Axis Gaussian Graphical Models Scalable to Millions of Samples and Features
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Andrew, Bailey, Westhead, David R., and Cutillo, Luisa
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Statistics - Machine Learning ,Computer Science - Machine Learning ,Quantitative Biology - Genomics - Abstract
Gaussian graphical models can be used to extract conditional dependencies between the features of the dataset. This is often done by making an independence assumption about the samples, but this assumption is rarely satisfied in reality. However, state-of-the-art approaches that avoid this assumption are not scalable, with $O(n^3)$ runtime and $O(n^2)$ space complexity. In this paper, we introduce a method that has $O(n^2)$ runtime and $O(n)$ space complexity, without assuming independence. We validate our model on both synthetic and real-world datasets, showing that our method's accuracy is comparable to that of prior work We demonstrate that our approach can be used on unprecedentedly large datasets, such as a real-world 1,000,000-cell scRNA-seq dataset; this was impossible with previous approaches. Our method maintains the flexibility of prior work, such as the ability to handle multi-modal tensor-variate datasets and the ability to work with data of arbitrary marginal distributions. An additional advantage of our method is that, unlike prior work, our hyperparameters are easily interpretable., Comment: 39 pages (48 with appendix+references), 8 figures, 7 tables
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- 2024
38. Many-Shot In-Context Learning for Molecular Inverse Design
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Moayedpour, Saeed, Corrochano-Navarro, Alejandro, Sahneh, Faryad, Noroozizadeh, Shahriar, Koetter, Alexander, Vymetal, Jiri, Kogler-Anele, Lorenzo, Mas, Pablo, Jangjou, Yasser, Li, Sizhen, Bailey, Michael, Bianciotto, Marc, Matter, Hans, Grebner, Christoph, Hessler, Gerhard, Bar-Joseph, Ziv, and Jager, Sven
- Subjects
Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Large Language Models (LLMs) have demonstrated great performance in few-shot In-Context Learning (ICL) for a variety of generative and discriminative chemical design tasks. The newly expanded context windows of LLMs can further improve ICL capabilities for molecular inverse design and lead optimization. To take full advantage of these capabilities we developed a new semi-supervised learning method that overcomes the lack of experimental data available for many-shot ICL. Our approach involves iterative inclusion of LLM generated molecules with high predicted performance, along with experimental data. We further integrated our method in a multi-modal LLM which allows for the interactive modification of generated molecular structures using text instructions. As we show, the new method greatly improves upon existing ICL methods for molecular design while being accessible and easy to use for scientists.
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- 2024
39. CHIME: LLM-Assisted Hierarchical Organization of Scientific Studies for Literature Review Support
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Hsu, Chao-Chun, Bransom, Erin, Sparks, Jenna, Kuehl, Bailey, Tan, Chenhao, Wadden, David, Wang, Lucy Lu, and Naik, Aakanksha
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Computer Science - Computation and Language - Abstract
Literature review requires researchers to synthesize a large amount of information and is increasingly challenging as the scientific literature expands. In this work, we investigate the potential of LLMs for producing hierarchical organizations of scientific studies to assist researchers with literature review. We define hierarchical organizations as tree structures where nodes refer to topical categories and every node is linked to the studies assigned to that category. Our naive LLM-based pipeline for hierarchy generation from a set of studies produces promising yet imperfect hierarchies, motivating us to collect CHIME, an expert-curated dataset for this task focused on biomedicine. Given the challenging and time-consuming nature of building hierarchies from scratch, we use a human-in-the-loop process in which experts correct errors (both links between categories and study assignment) in LLM-generated hierarchies. CHIME contains 2,174 LLM-generated hierarchies covering 472 topics, and expert-corrected hierarchies for a subset of 100 topics. Expert corrections allow us to quantify LLM performance, and we find that while they are quite good at generating and organizing categories, their assignment of studies to categories could be improved. We attempt to train a corrector model with human feedback which improves study assignment by 12.6 F1 points. We release our dataset and models to encourage research on developing better assistive tools for literature review., Comment: 2024 ACL Findings
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- 2024
40. When Do Universal Image Jailbreaks Transfer Between Vision-Language Models?
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Schaeffer, Rylan, Valentine, Dan, Bailey, Luke, Chua, James, Eyzaguirre, Cristóbal, Durante, Zane, Benton, Joe, Miranda, Brando, Sleight, Henry, Hughes, John, Agrawal, Rajashree, Sharma, Mrinank, Emmons, Scott, Koyejo, Sanmi, and Perez, Ethan
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Cryptography and Security ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
The integration of new modalities into frontier AI systems offers exciting capabilities, but also increases the possibility such systems can be adversarially manipulated in undesirable ways. In this work, we focus on a popular class of vision-language models (VLMs) that generate text outputs conditioned on visual and textual inputs. We conducted a large-scale empirical study to assess the transferability of gradient-based universal image "jailbreaks" using a diverse set of over 40 open-parameter VLMs, including 18 new VLMs that we publicly release. Overall, we find that transferable gradient-based image jailbreaks are extremely difficult to obtain. When an image jailbreak is optimized against a single VLM or against an ensemble of VLMs, the jailbreak successfully jailbreaks the attacked VLM(s), but exhibits little-to-no transfer to any other VLMs; transfer is not affected by whether the attacked and target VLMs possess matching vision backbones or language models, whether the language model underwent instruction-following and/or safety-alignment training, or many other factors. Only two settings display partially successful transfer: between identically-pretrained and identically-initialized VLMs with slightly different VLM training data, and between different training checkpoints of a single VLM. Leveraging these results, we then demonstrate that transfer can be significantly improved against a specific target VLM by attacking larger ensembles of "highly-similar" VLMs. These results stand in stark contrast to existing evidence of universal and transferable text jailbreaks against language models and transferable adversarial attacks against image classifiers, suggesting that VLMs may be more robust to gradient-based transfer attacks.
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- 2024
41. An Empirical Investigation Into the Time and Frequency Response Characteristics of Hopf Resonators
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Milligan, Keziah, Bailey, Nicholas J., and Porr, Bernd
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Electrical Engineering and Systems Science - Signal Processing - Abstract
We present an empirical investigation of software developed by the Science and Music Research Group at the University of Glasgow. Initially created for musicological applications, it is equally applicable in any area where precise time and frequency information is required from a signal, without encountering the problems associated with the uncertainty principle. By constructing a bank of non-linear tuned resonators (`detectors'), each of which operates at a Hopf bifurcation, it is possible to detect frequencies within half a period of oscillation, even in the presence of wideband noise. The time and frequency response characteristics of these detectors will be examined here.
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- 2024
42. MagAO-X: Commissioning Results and Status of Ongoing Upgrades
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Males, Jared R., Close, Laird M., Haffert, Sebastiaan Y., Kautz, Maggie Y., Kueny, Jay, Long, Joseph D., McEwen, Eden, Swimmer, Noah, Bailey III, John I., Foster, Warren, Mazin, Benjamin A., Pearce, Logan, Liberman, Joshua, Twitchell, Katie, Weinberger, Alycia J., Guyon, Olivier, Hedglen, Alexander D., McLeod, Avalon, Roberts, Roz, Van Gorkom, Kyle, Li, Jialin, Doty, Isabella, and Gasho, Victor
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
MagAO-X is the coronagraphic extreme adaptive optics system for the 6.5 m Magellan Clay Telescope. We report the results of commissioning the first phase of MagAO-X. Components now available for routine observations include: the >2 kHz high-order control loop consisting of a 97 actuator woofer deformable mirror (DM), a 2040 actuator tweeter DM, and a modulated pyramid wavefront sensor (WFS); classical Lyot coronagraphs with integrated low-order (LO) WFS and control using a third 97-actuator non-common path correcting (NCPC) DM; broad band imaging in g, r, i, and z filters with two EMCCDs; simultaneous differential imaging in H-alpha; and integral field spectroscopy with the VIS-X module. Early science results include the discovery of an H-alpha jet, images of accreting protoplanets at H-alpha, images of young extrasolar giant planets in the optical, discovery of new white dwarf companions, resolved images of evolved stars, and high-contrast images of circumstellar disks in scattered light in g-band (500 nm). We have commenced an upgrade program, called "Phase II", to enable high-contrast observations at the smallest inner working angles possible. These upgrades include a new 952 actuator NCPC DM to enable coronagraphic wavefront control; phase induced amplitude apodization coronagraphs; new fast cameras for LOWFS and Lyot-LOWFS; and real-time computer upgrades. We will report the status of these upgrades and results of first on-sky testing in March-May 2024., Comment: Presented at SPIE Astronomical Telescopes
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- 2024
43. Epsilon Sagittarii: An Extreme Rapid Rotator with a Decretion Disk
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Bailey, Jeremy, Lewis, Fiona, Howarth, Ian D., Cotton, Daniel V., Marshall, Jonathan P., and Kedziora-Chudczer, Lucyna
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We report high-precision multi-wavelength linear-polarization observations of the bright B9 (or A0) star $\epsilon$ Sagittarii. The polarization shows the distinctive wavelength dependence expected for a rapidly rotating star. Analysis of the polarization data reveals an angular rotation rate $\omega$ (= $\Omega/\Omega_{crit})$ of 0.995 or greater, the highest yet measured for a star in our galaxy. An additional wavelength-independent polarization component is attributed to electron scattering in a low-density edge-on gas disk that also produces the narrow absorption components seen in the spectrum. Several properties of the star (polarization due to a disk, occasional weak H$\alpha$ emission, and multiple periodicities seen in space photometry) resemble those of Be stars, but the level of activity in all cases is much lower than that of typical Be stars. The stellar properties are inconsistent with single rotating-star evolutionary tracks, indicating that it is most likely a product of binary interaction. The star is an excellent candidate for observation by interferometry, optical spectropolarimetry to detect the \"{O}hman effect, and UV polarimetry; any of which would allow its extreme rotation to be tested and its stellar properties to be refined., Comment: Accepted by Astrophysical Journal, 18 pages, 13 figures
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- 2024
44. Evaluating Large Language Models with Grid-Based Game Competitions: An Extensible LLM Benchmark and Leaderboard
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Topsakal, Oguzhan, Edell, Colby Jacob, and Harper, Jackson Bailey
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Computer Science - Artificial Intelligence ,Computer Science - Computation and Language ,Computer Science - Machine Learning ,Computer Science - Neural and Evolutionary Computing - Abstract
We introduce a novel and extensible benchmark for large language models (LLMs) through grid-based games such as Tic-Tac-Toe, Connect Four, and Gomoku. The open-source game simulation code, available on GitHub, allows LLMs to compete and generates detailed data files in JSON, CSV, TXT, and PNG formats for leaderboard rankings and further analysis. We present the results of games among leading LLMs, including Claude 3.5 Sonnet and Claude 3 Sonnet by Anthropic, Gemini 1.5 Pro and Gemini 1.5 Flash by Google, GPT-4 Turbo and GPT-4o by OpenAI, and Llama3-70B by Meta. We also encourage submissions of results from other LLMs. In total, we simulated 2,310 matches (5 sessions for each pair among 7 LLMs and a random player) across three types of games, using three distinct prompt types: list, illustration, and image. The results revealed significant variations in LLM performance across different games and prompt types, with analysis covering win and disqualification rates, missed opportunity analysis, and invalid move analysis. The details of the leaderboard and result matrix data are available as open-access data on GitHub. This study enhances our understanding of LLMs' capabilities in playing games they were not specifically trained for, helping to assess their rule comprehension and strategic thinking. On the path to Artificial General Intelligence (AGI), this study lays the groundwork for future exploration into their utility in complex decision-making scenarios, illuminating their strategic thinking abilities and offering directions for further inquiry into the limits of LLMs within game-based frameworks.
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- 2024
45. Correcting Turbulence-induced Errors in Fiber Positioning for the Dark Energy Spectroscopic Instrument
- Author
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Schlafly, E. F., Guy, J., Honscheid, K., Kent, S., Koposov, S. E., Aguilar, J., Ahlen, S., Bailey, S., Brooks, D., Claybaugh, T., Dawson, K., Doel, P., Fanning, K., Finkbeiner, D. P., Font-Ribera, A., Forero-Romero, J. E., Gontcho, S. Gontcho A, Gutierrez, G., Kirkby, D., Kisner, T., Kremin, A., Lasker, J., Landriau, M., Guillou, L. Le, Levi, M. E., de la Macorra, A., Martini, P., Meisner, A., Miquel, R., Moustakas, J., Niz, G., Prada, F., Rossi, G., Sanchez, E., Schubnell, M., Sharples, R., Sprayberry, D., Tarlé, G., Weaver, B. A., and Zou, H.
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Highly-multiplexed, robotic, fiber-fed spectroscopic surveys are observing tens of millions of stars and galaxies. For many systems, accurate positioning relies on imaging the fibers in the focal plane and feeding that information back to the robotic positioners to correct their positions. Inhomogeneities and turbulence in the air between the focal plane and the imaging camera can affect the measured positions of fibers, limiting the accuracy with which fibers can be placed on targets. For the Dark Energy Spectroscopic Instrument, we dramatically reduced the effect of turbulence on measurements of positioner locations in the focal plane by taking advantage of stationary positioners and the correlation function of the turbulence. We were able to reduce positioning errors from 7.3 microns to 3.5 microns, speeding the survey by 1.6% under typical conditions., Comment: 11 pages, 5 figures
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- 2024
46. DESI Early Data Release Milky Way Survey Value-Added Catalogue
- Author
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Koposov, Sergey E., Allende-Prieto, C., Cooper, A. P., Li, T. S., Silva, L. Beraldo e, Kim, B., Carrillo, A., Dey, A., Manser, C. J., Nikakhtar, F., Riley, A. H., Rockosi, C., Valluri, M., Aguilar, J., Ahlen, S., Bailey, S., Blum, R., Brooks, D., Claybaugh, T., Cole, S., de la Macorra, A., Dey, B., Forero-Romero, J. E., Gaztañaga, E., Guy, J., Kremin, A., Guillou, L. Le, Levi, Michael E., Manera, M., Meisner, A., Miquel, R., Moustakas, J., Nie, J., Palanque-Delabrouille, N., Percival, W. J., Rezaie, M., Rossi, G., Sanchez, E., Schlafly, E. F., Schubnell, M., Tarlé, G., Weaver, B. A., and Zhou, Z.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We present the stellar value-added catalogue based on the Dark Energy Spectroscopic Instrument (DESI) Early Data Release. The catalogue contains radial velocity and stellar parameter measurements for $\simeq$ 400,000 unique stars observed during commissioning and survey validation by DESI. These observations were made under conditions similar to the Milky Way Survey (MWS) currently carried out by DESI but also include multiple specially targeted fields, such as those containing well-studied dwarf galaxies and stellar streams. The majority of observed stars have $16
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- 2024
47. You shall not pass! -- explicit diffeomorphism violation 'no-go' constraints and discontinuities
- Author
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Bailey, Quentin G., O'Neal-Ault, Kellie, and Nilsson, Nils A.
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General Relativity and Quantum Cosmology - Abstract
This paper collects several results in the study of the explicit symmetry-breaking limit of the effective-field theory (EFT) description of diffeomorphism and local Lorentz-symmetry breaking, where we generalize a subset of the EFT framework (the ``minimal" sector). It is well known that no-go constraints may arise in cases of explicit symmetry-breaking in curved spacetime as a consequence of the Bianchi identities; we show in this work that certain terms in the action can be countenanced and used to cancel would-be no-go constraints, at least in the linearized gravity limit. Nonetheless, we go on to find more potential issues, and we show that one particular explicit breaking subset of the EFT, while evading direct no-go constraints, results in a discontinuity - unsuppressed additional polarizations for gravitational waves. In a general treatment of the explicit breaking EFT, but confined to linearized gravity, we explicitly show the existence of an extra degree of freedom, independent of coordinates. We find extra polarizations of gravitational waves in the solutions, with a scalar mode unsuppressed by any coefficient, which could render these cases ruled out by observations., Comment: 21 pages, 2 tables. Clarifications and references added, title changed. Accepted for publication in Physical Review D
- Published
- 2024
48. Core-level signature of long-range density-wave order and short-range excitonic correlations probed by attosecond broadband spectroscopy
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Zong, Alfred, Lin, Sheng-Chih, Sato, Shunsuke A., Berger, Emma, Nebgen, Bailey R., Hui, Marcus, Lv, B. Q., Cheng, Yun, Xia, Wei, Guo, Yanfeng, Xiang, Dao, and Zuerch, Michael W.
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
Advances in attosecond core-level spectroscopies have successfully unlocked the fastest dynamics involving high-energy electrons. Yet, these techniques are not conventionally regarded as an appropriate probe for low-energy quasiparticle interactions that govern the ground state of quantum materials, nor for studying long-range order because of their limited sensitivity to local charge environments. Here, by employing a unique cryogenic attosecond beamline, we identified clear core-level signatures of long-range charge-density-wave (CDW) formation in a quasi-2D excitonic insulator candidate, even though equilibrium photoemission and absorption measurements of the same core levels showed no spectroscopic singularity at the phase transition. Leveraging the high time resolution and intrinsic sensitivity to short-range charge excitations in attosecond core-level absorption, we observed compelling time-domain evidence for excitonic correlations in the normal-state of the material, whose presence has been subjected to a long-standing debate in equilibrium experiments because of interfering phonon fluctuations in a similar part of the phase space. Our findings support the scenario that short-range excitonic fluctuations prelude long-range order formation in the ground state, providing important insights in the mechanism of exciton condensation in a quasi-low-dimensional system. These results further demonstrate the importance of a simultaneous access to long- and short-range order with underlying dynamical processes spanning a multitude of time- and energy-scales, making attosecond spectroscopy an indispensable tool for both understanding the equilibrium phase diagram and for discovering novel, nonequilibrium states in strongly correlated materials.
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- 2024
49. Convergence, optimization and stability of singular eigenmaps
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Akwei, Bernard, Atkins, Bobita, Bailey, Rachel, Dalal, Ashka, Dinin, Natalie, Kerby-White, Jonathan, McGuinness, Tess, Patricks, Tonya, Rogers, Luke, Romanelli, Genevieve, Su, Yiheng, and Teplyaev, Alexander
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Mathematics - Probability ,Mathematics - Metric Geometry ,Mathematics - Statistics Theory ,60D05 28A80 62R07 65J20 - Abstract
Eigenmaps are important in analysis, geometry, and machine learning, especially in nonlinear dimension reduction. Approximation of the eigenmaps of a Laplace operator depends crucially on the scaling parameter $\epsilon$. If $\epsilon$ is too small or too large, then the approximation is inaccurate or completely breaks down. However, an analytic expression for the optimal $\epsilon$ is out of reach. In our work, we use some explicitly solvable models and Monte Carlo simulations to find the approximately optimal range of $\epsilon$ that gives, on average, relatively accurate approximation of the eigenmaps. Numerically we can consider several model situations where eigen-coordinates can be computed analytically, including intervals with uniform and weighted measures, squares, tori, spheres, and the Sierpinski gasket. In broader terms, we intend to study eigen-coordinates on weighted Riemannian manifolds, possibly with boundary, and on some metric measure spaces, such as fractals.
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- 2024
50. Fair, Manipulation-Robust, and Transparent Sortition
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Baharav, Carmel and Flanigan, Bailey
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Computer Science - Artificial Intelligence - Abstract
Sortition, the random selection of political representatives, is increasingly being used around the world to choose participants of deliberative processes like Citizens' Assemblies. Motivated by sortition's practical importance, there has been a recent flurry of research on sortition algorithms, whose task it is to select a panel from among a pool of volunteers. This panel must satisfy quotas enforcing representation of key population subgroups. Past work has contributed an algorithmic approach for fulfilling this task while ensuring that volunteers' chances of selection are maximally equal, as measured by any convex equality objective. The question, then, is: which equality objective is the right one? Past work has mainly studied the objectives Minimax and Leximin, which respectively minimize the maximum and maximize the minimum chance of selection given to any volunteer. Recent work showed that both of these objectives have key weaknesses: Minimax is highly robust to manipulation but is arbitrarily unfair; oppositely, Leximin is highly fair but arbitrarily manipulable. In light of this gap, we propose a new equality objective, Goldilocks, that aims to achieve these ideals simultaneously by ensuring that no volunteer receives too little or too much chance of selection. We theoretically bound the extent to which Goldilocks achieves these ideals, finding that in an important sense, Goldilocks recovers among the best available solutions in a given instance. We then extend our bounds to the case where the output of Goldilocks is transformed to achieve a third goal, Transparency. Our empirical analysis of Goldilocks in real data is even more promising: we find that this objective achieves nearly instance-optimal minimum and maximum selection probabilities simultaneously in most real instances -- an outcome not even guaranteed to be possible for any algorithm.
- Published
- 2024
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