1,784 results on '"Bacteriologie"'
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2. Bactériologie de mammites : quelle place pour le laboratoire d'analyses ?
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Lequeux, Guillaume
- Abstract
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- Published
- 2022
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3. INTÉRÊT DE LA BACTÉRIOLOGIE DU LAIT CHEZ DES VACHES PRÉSUMÉES SAINES DANS LE DERNIER MOIS DE LACTATION EN VUE DU TRAITEMENT SÉLECTIF AU TARISSEMENT.
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GUIVARC'H, Nicolas
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- 2023
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4. Profil bactériologique et pronostique des pneumonies bactériennes non tuberculeuses chez les patients VIH au Mali.
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Issa Konate and et. al
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patient VIH ,pneumonies non tuberculeuses ,bactériologie ,Mali ,Medicine ,Microbiology ,QR1-502 - Abstract
Introduction : Les infections bactériennes respiratoires non tuberculeuses sont fréquentes surtout chez les patients VIH mais le diagnostic microbiologique reste difficile. L’objectif était de répertorier les bactéries isolées dans des expectorations des patients VIH au service de maladies infectieuses du CHU Point « G » au Mali.Méthodologie : Il s’agit d’une étude transversale analytique de juin 2017 à juillet 2019. Ont été inclus les patients infectés par le VIH, présentant une pneumopathie infectieuse chezqui la culture des expectorations acheminées au Laboratoire est revenue positive. Les méthodes standards d’isolement et d’identification des bactéries ont été utilisées. Résultats : Au total, 445 patients VIH étaient hospitalisés dont 222 ont présenté une pneumopathie infectieuse (49,9%). Les expectorations ont été analysées chez 174 patients (78,4%) avec isolement de 59 agents bactériens non tuberculeux (33,9%). Les entérobactéries (62,7%), les bacilles Gram négatif non fermentant (20,3%) et les Cocci Gram positif (17,0%) étaient les trois groupes de germes identifiés. K. pneumoniae (28,8%), E. coli (13,6%), E. cloacae (13,6%), A. baumannii (11,9%), P. aeruginosa (6,8%) et S.pneumoniae (6,8%) étaient les souches les plus isolées dans les expectorations. La co-infection avec Mycobacterium tuberculosis étaient de 27,1%. En tout, 17 souches multirésistantes (28,8%) à savoir 14 BLSE, deux ABRI et une SARM ont été retrouvées parmi les bactéries isolées. Le délai médian de diagnostic était de 7 jours [IIQ : 3 jours et 15 jours]. L’âge moyen était de 43,7±11,4 ans (19 et 68 ans) avec un sex-ratio de 1,85. L’antécédent de tuberculose pulmonaire et la notion de tabagisme étaient retrouvés respectivement dans 7% et 15,8% des cas. La durée moyenne d’hospitalisation était de 24,4±14,1 jours (5 et 68 jours). Elle était de 33,2±11,8 jours chez les patients coïnfectés avec la tuberculose et de 22,6±13,7 jours chez les monoinfectés (p= 0,008). La mortalité hospitalière était de 22,8% (n=13).Conclusion : Les pneumonies non tuberculeuses sont fréquentes chez les patients VIH. Les microorganismes retrouvés sont dominés par les entérobactéries parfois multirésistantes. La coïnfection avec la tuberculose est fréquente d’où la nécessité de sarecherche systématique devant les signes pulmonaires sur ce terrain
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- 2022
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5. Aspects cliniques et bactériologiques des méningites purulentes en zone rurale centrafricaine
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G Tekpa, E Gbangba Ngai, E Yangatimbi, F Kitakossi, CD Mossoro-kpinde, and P Mbelesso
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bactériologie ,centrafrique ,clinique ,méningite purulente ,Medicine ,Microbiology ,QR1-502 - Abstract
Objectif : Décrire les aspects cliniques, bactériologiques et évolutifs des méningites purulentes en zone rurale. Patient et méthode : Il s’agissait d’une étude rétrospective ayant concerné la période du 1er janvier 2011 au 30 septembre 2016, réalisée dans un service de pédiatrie et en médecine générale, dans un hôpital de district, au nord-ouest de la République centrafricaine (RCA). Etaient inclus dans l’étude, les malades présentant un syndrome méningé fébrile dont l’analyse du liquide céphalo-rachidien (LCR) montrait une prédominance des polynucléaires neutrophiles avec ou sans isolement d’une bactérie. Résultats : Au total 375 malades ont été inclus dont 54,93% de sexe masculin soit un ratio de 1,2. L’âge médian était de 4 ans [15 jours et 75 ans]. Les principaux signes cliniques étaient, la fièvre (93%), la raideur de la nuque (58%), les convulsions (41,81%) et une perte de connaissance (22,67%). Dans 84,26% des cas, le LCR était trouble ou purulent. Les principaux germes isolés étaient S. pneumoniae (51,82%), N. meningitidis (40,15%) et H. influenzae (7,30%). Les pathologies associées étaient le paludisme (60,53%) et l’infection à VIH (4,27%). Le taux de létalité était de 14,67%. Dans 9% des cas, les malades ont présenté des séquelles, essentiellement neurosensorielles. Conclusion : La méningite purulente est fréquente dans le nord centrafricain, se caractérisant par des manifestations cliniques polymorphes. Nos résultats suggèrent que devant tout épisode fébrile avec signes méningés une ponction lombaire devra être réalisée en urgence
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- 2020
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6. Profil clinique et biologique des infections néonatales bactériennes précoces au Centre de Santé Mère et Enfant de Maradi, Niger
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I Georges Thomas, Aboubacar Samaila, and et. al
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Infection néonatale précoce ,bactériologie ,Niger ,Medicine ,Microbiology ,QR1-502 - Abstract
Objectif : Cette étude a pour but de déterminer le profil clinique et bactériologique des infections néonatales bactériennes précoces à Maradi. Patients et méthodes : Il s’agissait d’une étude prospective descriptive qui s’est déroulée de juillet à septembre 2018 à Maradi. Etaient inclus, tous les nouveau-nés âgés de zéro à trois jours suspects d’infection (critères ANAES, 2002). Des examens bactériologiques étaient effectués aussitôt après la naissance, à partir des prélèvements périphériques (conduit auditif externe et méconium). L’analyse des données a été faite à l’aide du logiciel Epi info 7.2.1. Résultats : Cent cinquante nouveau-nés étaient étudiés. Le critère infectieux anamnestique le plus retrouvé était la rupture prématurée des membranes (65,33%). La symptomatologie était dominée par les signes respiratoires (23%). La CRP était supérieure à 20mg/l dans 44,44 % des cas. Soixante et huit prélèvements étaient positifs. Au niveau du conduit auditif externe, le Staphylococcus aureus, le Streptococcus agalactiae et l’Escherichia coli k1 étaient retrouvés avec respectivement 27 cas, 15 cas et 7 cas. Les mêmes germes étaient aussi rapportés dans le méconium avec 11 cas, 6 cas et 5 cas respectivement. Les souches de Staphylocoques ont présenté une bonne sensibilité à la vancomycine (88,9%).Conclusion : De par leur fréquence, les INBP restent un problème de santé publique dans nos régions. L’écologie bactérienne était dominée par les staphylocoques, témoignant le plus souvent de l’infection nosocomiale.
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- 2022
7. Salmonella Dublin associated with abortion in dairy cattle in Algiers and comparison of different diagnostic methods.
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Hezil, Dj., Zaidi, S., Benseghir, H., Zineddine, R., Benamrouche, N., and Ghalmi, F.
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DAIRY cattle , *TYPHOID fever , *SALMONELLA , *ABORTION , *SALMONELLA enterica , *FECES , *ENZYME-linked immunosorbent assay , *SALMONELLA diseases - Abstract
Background: In cattle, many serotypes of Salmonella enterica are responsible for a wide variety of clinical manifestations, which can cause considerable economic loss. Some serotypes can cause cows to abort sporadically, such as the Dublin serotype. This study was carried out on different cattle farms in the Algiers region to determine the prevalence of Salmonella Dublin using bacteriological and immunological methods. Methodology: The prevalence of Salmonella was determined by bacteriological analysis in accordance with the reference method AFNOR NF U 47-100 on faecal samples collected from 184 cattle belonging to 19 different farms, and serotyping for S. Dublin. Immunological analysis by enzyme-linked immunosorbent assay (ELISA) for S. Dublin was carried out on milk samples collected from 91 cattle. A survey of case (n=5) and control (n=14) farms for comparative analysis was performed to demonstrate a link between abortion in cows and prevalence of S. Dublin with both bacteriological and immunological methods. Sensitivity, specificity, Cohen Kappa coefficient, McNemar test odds ratios, and confidence intervals were calculated using Winepiscope 2.0 and StatA 9.1 software, and p<0.05 was considered as statistically significant. Results: The bacteriological results showed a prevalence of 7.6% (95%CI: 3-10), for Salmonella and serotyping revealed a prevalence for S. Dublin of 2.7%. The immunological analysis of milk by the ELISA technique revealed a prevalence of 13.2% (95%CI: 5-20) for S. Dublin. The comparative study between immunological results from milk and bacteriological results from faeces for detecting S. Dublin showed poor agreement between the two tests (k=0.25), with enzyme immunoassay being significantly more sensitive than the bacteriological test (p<0.05). The results of the survey did not demonstrate a clear association between bacteriological detection of S. Dublin in faeces and abortion in cows (OR=8.66, 95%CI: 0.58-130.12). However, with the immunological analysis of milk for S. Dublin, there was a significant positive association (OR=62.33, 95%CI: 2.13-18.22) between a positive antibody response to S. Dublin in milk and the presence of abortions on the farm. Conclusion: In view of these results, we can conclude that Salmonella infections should systematically feature in the differential diagnosis of abortions in dairy cattle in Algeria. [ABSTRACT FROM AUTHOR]
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- 2021
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8. Caractérisation de la nucléase SSNA : un régulateur des transferts horizontaux de gènes et déterminant de la virulence de Neisseria meningitidis
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Chenal, Martin and Chenal, Martin
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Les bactéries du genre Neisseria sont un exemple remarquable d’évolution et d’adaptation. Composées principalement d’espèces commensales, seules deux espèces sont pathogènes chez l’humain : N. meningitidis et N. gonorrhoeae. La première est responsable d’infections systémiques souvent mortelles lorsque non traitées, tandis que la seconde cause une infection transmise sexuellement très prévalente au Canada. Plusieurs attributs contribuent à l’évolution rapide et complexe des Neisseria. Leur génome est une véritable mosaïque d’éléments répétés, dont beaucoup sont encore méconnus. De plus, ces bactéries sont naturellement compétentes, signifiant qu’elles ont la capacité d’acquérir de l’ADN de leur environnement par transformation, mais la régulation de ce mécanisme est mal comprise. Cette étude s’intéresse à une petite protéine hypothétique des Neisseria, dont plusieurs caractéristiques lui suggèrent des rôles biologiques et évolutifs importants. Nous avons nommé celle-ci SsnA pour Specific single-strand nuclease. Son gène est entouré de nombreuses copies d’une séquence répétée aux fonctions jusque-là inconnues, nommées NTS. Dans le but de percer les secrets de ces deux éléments intrigants, nous avons procédé à leur caractérisation exhaustive en utilisant des approches complémentaires incluant des études bio-informatiques, biochimiques, phénotypiques en plus de modèles animaux. Nos résultats démontrent que SsnA est une endonucléase d’ADN simple-brin ciblant spécifiquement les séquences répétées NTS, présentes en centaines de copies dans le génome de N. meningitidis. Grâce à cette activité enzymatique unique, SsnA régule l’intégration d’ADN exogène par transformation, un des principaux mécanismes de transfert horizontal de gènes chez les Neisseria. Notre étude révèle également que cette nucléase est un déterminant majeur de la virulence de N. meningitidis. Enfin, nos analyses suggèrent que SsnA est le premier membre caractérisé d’une vaste famille de nuclé
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- 2023
9. Prevalence of mastitis in Algerian dromedary camels and antimicrobial resistance of the causative Staphylococci
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Barka, Imane, Akkou, Madjid, Khelef, Djame, Bentayeb, Lamia, Bouchami, Amina, Boudrissa, Abdelkarim, Faye, Bernard, Ait-Oudhia, Khatima, Barka, Imane, Akkou, Madjid, Khelef, Djame, Bentayeb, Lamia, Bouchami, Amina, Boudrissa, Abdelkarim, Faye, Bernard, and Ait-Oudhia, Khatima
- Abstract
To investigate the prevalence, bacterial spectrum of mastitis, and antimicrobial resistance of the causative staphylococci in Algerian dromedary camels, a total of 200 lactating camels were first examined for clinical mastitis and the healthy quarters were examined for subclinical mastitis using the California Mastitis Test (CMT). Milk samples from the affected quarters were collected aseptically and analysed using conventional bacteriological isolation and identification procedures. Staphylococcal isolates were then analysed for antimicrobial resistance. The overall prevalence of mastitis in camels based on CMT and clinical examination was 35 % (70/200), of which 7.5 % (15/200) was clinical mastitis and 27.5 % (55/200) was subclinical mastitis. At the quarterly level, the overall prevalence was 11.87 % (95/800), of which 2.62 % (21/800) was clinical mastitis and 9.25 % (74/800) was subclinical mastitis. A total of 98 bacterial isolates were identified from the 95 cultured milk samples. Staphylococci (70.4%) were the predominant isolates, with 31.63 % identified as coagulase-positive staphylococci (CPS) including S. aureus at 25.51 % and 38.77 % identified as coagulase-negative staphylococci (CNS). The remaining isolates were Micrococcus sp., Streptococcus sp., Bacillus sp., E. coli, and Enterococcus. Antibiotic susceptibility testing revealed that 24 (34.78 %) of the isolates were susceptible to all antimicrobial drugs tested, while 21.73 % (15/69) were multidrug resistant strains. The highest resistance rates were found for penicillin, tetracycline and erythromycin with 33.33 %, 31.48 % and 21.74 %, respectively. Therefore, the implementation of integrated approaches in the study is of great importance for the prevention and control of mastitis to improve the quality of camel milk, minimize economic losses and avoid significant public health risks.
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- 2023
10. Intranasal administration of a live-attenuated recombinant newcastle disease virus expressing the SARS-CoV-2 Spike protein induces high neutralizing antibody levels and protects from experimental challenge infection in hamsters
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Rik L. de Swart, Olav S. de Leeuw, Nadia Oreshkova, Nora M. Gerhards, Irina C. Albulescu, Sandra Vreman, José L. Gonzales, Riks Maas, Frank J.M. van Kuppeveld, Peter Soema, Berend-Jan Bosch, and Ben P.H. Peeters
- Subjects
COVID-19 Vaccines ,Epidemiology ,Bioinformatica & Diermodellen ,Newcastle disease virus ,Antibodies, Viral ,Cricetinae ,Bio-informatics & Animal models ,Animals ,Humans ,Life Science ,Epidemiology, Bio-informatics & Animal models ,Pandemics ,Administration, Intranasal ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,Vaccines, Synthetic ,General Veterinary ,General Immunology and Microbiology ,SARS-CoV-2 ,Bacteriologie ,Public Health, Environmental and Occupational Health ,COVID-19 ,Bacteriology ,Viral Vaccines ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Antibodies, Neutralizing ,Host Pathogen Interactie & Diagnostiek ,Virology & Molecular Biology ,Virologie & Moleculaire Biologie ,Infectious Diseases ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Spike Glycoprotein, Coronavirus ,Molecular Medicine - Abstract
The emergence of SARS-CoV-2 in December 2019 resulted in the COVID-19 pandemic. Recurring disease outbreaks repeatedly overloaded the public health sector and severely affected the global economy. We developed a candidate COVID-19 vaccine based on a recombinant Newcastle disease virus (NDV) vaccine vector, encoding a pre-fusion stabilized full-length Spike protein obtained from the original SARS-CoV-2 Wuhan isolate. Vaccination of hamsters by intra-muscular injection or intra-nasal instillation induced high neutralizing antibody responses. Intranasal challenge infection with SARS-CoV-2 strain Lelystad demonstrated that both vaccination routes provided partial protection in the upper respiratory tract, and almost complete protection in the lower respiratory tract, as measured by suppressed viral loads and absence of histological lung lesions. Activity wheel measurements demonstrated that animals vaccinated by intranasal inoculation rapidly recovered to normal activity. NDV constructs encoding the spike of SARS-CoV-2 may be attractive candidates for development of intra-nasal COVID-19 booster vaccines.
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- 2022
11. Profil du lavage bronchoalvéolaire chez l'enfant asthmatique sévère, corrélations phénotypiques et impact thérapeutique : une étude chez 56 enfants au CHU de Clermont-Ferrand
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Allali, Brahim, Faculté de Médecine - Clermont-Auvergne (FM - UCA), Université Clermont Auvergne (UCA), and Carole Egron
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Enfant ,Endotype ,Bactériologie ,Endoscopie bronchique ,Virologie ,Asthme sévère ,Lavage bronchoalvéolaire ,Phénotype ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
CONTEXTE : chez l’enfant asthmatique sévère, le lavage bronchoalvéolaire (LBA) permet de typer l’inflammation et classer l’asthme selon la cellularité prédominante : éosinophilique, neutrophilique et potentiellement orienter la prise en charge vers des thérapeutiques personnalisées.OBJECTIF : décrire les profils cytologiques du LBA des enfants asthmatiques sévères, étudier leur phénotype clinique et l’apport des résultats du LBA dans leur prise en charge thérapeutique.MÉTHODE : étude observationnelle, prospective, incluant les enfants asthmatiques sévères ayant bénéficié d’une endoscopie bronchique entre septembre 2021 et février 2023, au sein du CHU de Clermont Ferrand.RÉSULTATS : 56 enfants âgés en moyenne de 4 ans et 8 mois ont bénéficié d’un LBA. 85,7 % présentaient une cytologie neutrophilique. Le pourcentage de neutrophiles était plus élevé chez les moins de 3 ans, comparativement aux 3 à 6 ans (p = 0,00) et aux plus de 6 ans (p = 0,006), même en l’absence d’infection. Le pourcentage d’éosinophiles était plus important chez les plus de 6 ans comparativement aux moins de 3 ans (p = 0,02). 30,4 % des enfants avaient une bactériologie positive et 48,2 % une virologie positive. L’âge était corrélé négativement avec le pourcentage de neutrophiles et positivement avec le pourcentage d’éosinophiles. Le contrôle de l’asthme, l’atopie et l’exposition tabagique n’avaient pas d’impact sur les résultats. L’azithromycine a visée anti-inflammatoire a été introduite chez 60 % des enfants. Une antibiothérapie curative était prescrite chez 29 % des patients infectés.CONCLUSION : l’enfant asthmatique sévère présente une cytologie majoritairement neutrophilique, notamment le jeune enfant. En l’absence d’alternative thérapeutique en dehors de l’azithromycine à visée anti-inflammatoire chez le jeune enfant et malgré le développement de plusieurs biothérapies ciblées chez le plus grand, le LBA garde à ce jour une place limitée dans la décision thérapeutique de l’enfant asthmatique sévère.
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- 2023
12. One Health surveillance-A cross-sectoral detection, characterization, and notification of foodborne pathogens
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Tast Lahti, Elina, Karamehmedovic, Nadja, Riedel, Hilde, Blom, Linnea, Boel, Jeppe, Delibato, Elisabetta, Denis, Martine, van Essen-Zandbergen, Alieda, Garcia-Fernandez, Aurora, Hendriksen, Rene, Heydecke, Anna, van Hoek, Angela H. A. M., Huby, Tom, Kwit, Renata, Lucarelli, Claudia, Lundin, Karl, Michelacci, Valeria, Owczarek, Slawomir, Ring, Isaac, Sejer Kjeldgaard, Jette, Sjogren, Ingegerd, Skora, Milena, Torpdahl, Mia, Ugarte-Ruiz, Maria, Veldman, Kees, Ventola, Eleonora, Zajac, Magdalena, and Jernberg, Cecilia
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Host Pathogen Interaction & Diagnostics ,proficiency tests ,Bacteriologie ,Public Health, Environmental and Occupational Health ,Public Health, Global Health, Social Medicine and Epidemiology ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Host Pathogen Interactie & Diagnostiek ,Folkhälsovetenskap, global hälsa, socialmedicin och epidemiologi ,SDG 3 - Good Health and Well-being ,detection and characterization ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,External Quality Assessment ,notification ,One Health surveillance ,foodborne pathogens - Abstract
IntroductionSeveral Proficiency Test (PT) or External Quality Assessment (EQA) schemes are currently available for assessing the ability of laboratories to detect and characterize enteropathogenic bacteria, but they are usually targeting one sector, covering either public health, food safety or animal health. In addition to sector-specific PTs/EQAs for detection, cross-sectoral panels would be useful for assessment of the capacity to detect and characterize foodborne pathogens in a One Health (OH) perspective and further improving food safety and interpretation of cross-sectoral surveillance data. The aims of the study were to assess the cross-sectoral capability of European public health, animal health and food safety laboratories to detect, characterize and notify findings of the foodborne pathogens Campylobacter spp., Salmonella spp. and Yersinia enterocolitica, and to develop recommendations for future cross-sectoral PTs and EQAs within OH. The PT/EQA scheme developed within this study consisted of a test panel of five samples, designed to represent a theoretical outbreak scenario.MethodsA total of 15 laboratories from animal health, public health and food safety sectors were enrolled in eight countries: Denmark, France, Italy, the Netherlands, Poland, Spain, Sweden, and the United Kingdom. The laboratories analyzed the samples according to the methods used in the laboratory and reported the target organisms at species level, and if applicable, serovar for Salmonella and bioserotype for Yersinia.ResultsAll 15 laboratories analyzed the samples for Salmonella, 13 for Campylobacter and 11 for Yersinia. Analytical errors were predominately false negative results. One sample (S. Stockholm and Y. enterocolitica O:3/BT4) with lower concentrations of target organisms was especially challenging, resulting in six out of seven false negative results. These findings were associated with laboratories using smaller sample sizes and not using enrichment methods. Detection of Salmonella was most commonly mandatory to notify within the three sectors in the eight countries participating in the pilot whereas findings of Campylobacter and Y. enterocolitica were notifiable from human samples, but less commonly from animal and food samples.DiscussionThe results of the pilot PT/EQA conducted in this study confirmed the possibility to apply a cross-sectoral approach for assessment of the joint OH capacity to detect and characterize foodborne pathogens.
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- 2023
13. Effects of hatching system on chick quality, welfare and health of young breeder flock offspring
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Molenaar, Roos, Stockhofe-Zurwieden, Norbert, Giersberg, Mona F, Rodenburg, T Bas, Kemp, Bas, van den Brand, Henry, de Jong, Ingrid C, AISS Animal Welfare, and AISS Animal Welfare
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Host Pathogen Interaction & Diagnostics ,Bacteriologie ,eggshell temperature ,Bacteriology ,General Medicine ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Host Pathogen Interactie & Diagnostiek ,Dierenwelzijn en gezondheid ,broiler chicken ,welfare ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,WIAS ,Life Science ,Adaptation Physiology ,Animal Science and Zoology ,Animal Health & Welfare ,Adaptatiefysiologie ,resilience ,hatching system - Abstract
Alternative hatching systems have been developed for broiler chickens to provide immediately feed and water after hatch and reduce the number or severity of early life stressors. Besides beneficial effects of these alternative hatching systems on chick quality and performance, broiler health and welfare may be positively affected as well. Especially offspring from young broiler breeder flocks may benefit, as they have been shown to be more sensitive to preturbations than offspring from older breeder flocks. This study evaluated effects of hatching systems on chick quality, health and welfare of young breeder flock offspring, using 3 different hatching systems: conventional hatchery-hatched (HH), hatchery-fed (HF), and on-farm hatching (OH). A total of 24 pens were used in a completely randomized block design, with 8 pens per hatching system and 30 chickens per pen. Chick quality at hatch and performance until 35 d of age was improved in the HF and OH compared to HH treatment, but only minor effects were found on the welfare indicators: footpad dermatitis, hock burn, cleanliness, skin lesion and gait score. No effect was observed on the dynamics of a humoral immune response after NCD vaccination, given at d 0 and 14 of age, as no differences between NCD titers were found at d 18. Animals were vaccinated with a live attenuated infectious bronchitis vaccine virus (IBV) at d 28 to address treatment related differences to disease resilience. The expressions of inflammation and epithelial integrity related genes in the trachea and histo-pathological changes in the trachea were examined at 3 d after vaccine administration. No differences between treatment groups were observed. Although beneficial effects of HF and OH systems were found for young breeder flock offspring on chick quality at hatch and body weight posthatch, only one effect of alternative hatching systems on welfare and health indicators were found. No effect of hatching system on humoral immune response or disease resilience was found. Alternative hatching systems have been developed for broiler chickens to provide immediately feed and water after hatch and reduce the number or severity of early life stressors. Besides beneficial effects of these alternative hatching systems on chick quality and performance, broiler health and welfare may be positively affected as well. Especially offspring from young broiler breeder flocks may benefit, as they have been shown to be more sensitive to preturbations than offspring from older breeder flocks. This study evaluated effects of hatching systems on chick quality, health and welfare of young breeder flock offspring, using 3 different hatching systems: conventional hatchery-hatched (HH), hatchery-fed (HF), and on-farm hatching (OH). A total of 24 pens were used in a completely randomized block design, with 8 pens per hatching system and 30 chickens per pen. Chick quality at hatch and performance until 35 d of age was improved in the HF and OH compared to HH treatment, but only minor effects were found on the welfare indicators: footpad dermatitis, hock burn, cleanliness, skin lesion and gait score. No effect was observed on the dynamics of a humoral immune response after NCD vaccination, given at d 0 and 14 of age, as no differences between NCD titers were found at d 18. Animals were vaccinated with a live attenuated infectious bronchitis vaccine virus (IBV) at d 28 to address treatment related differences to disease resilience. The expressions of inflammation and epithelial integrity related genes in the trachea and histo-pathological changes in the trachea were examined at 3 d after vaccine administration. No differences between treatment groups were observed. Although beneficial effects of HF and OH systems were found for young breeder flock offspring on chick quality at hatch and body weight posthatch, only one effect of alternative hatching systems on welfare and health indicators were found. No effect of hatching system on humoral immune response or disease resilience was found.
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- 2023
14. Place à accorder à la bactériologie du liquide articulaire dans le diagnostic d'une arthrite septique de l'adulte : cas des pays à faible revenu comme Madagascar.
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Rakotozafiarison, A.N., Rakotomalala, H.N., Nivo Andriamampianina, S., and Ralandison, S.
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INFECTIOUS arthritis ,SYNOVIAL fluid ,HEALTH facilities ,THERAPEUTICS ,MEDICAL care ,UNIVERSITY hospitals ,PATHOLOGICAL laboratories - Abstract
Résumé: L'arthrite septique demeure une maladie grave pouvant laisser de multiples séquelles. L'identification du germe constitue le point clé du diagnostic. Toutes les recommandations internationales sont univoques sur cette stratégie de diagnostic de l'arthrite septique chez l'adulte. À Madagascar, qui a un système de santé faible, un examen bactériologique du liquide articulaire ne peut être disponible dans toutes les formations sanitaires. Cependant, nous pensons pouvoir proposer des solutions effectives, efficaces, efficientes et scientifiquement valables malgré les conditions socio-économiques et les situations sanitaires actuelles, tout en prenant en compte des recommandations internationales. Des centres disposant d'un laboratoire de référence en qualité et en recherche et d'un service de rhumatologie pourront devenir pilotes dans l'élaboration de recommandations de prise en charge de l'arthrite septique adaptées aux pays à faible revenu comme Madagascar, puis les diffuser dans tout le pays. En attendant, tous les médecins des centres de santé de base doivent référer tout cas suspect d'arthrite septique vers des centres spécialisés. Septic arthritis is a serious disease and its treatment remains a major challenge. Demonstration of the microorganism is the key to diagnosis according to all international guidelines. In developing countries such as Madagascar, where access to basic health services is still difficult, bacteriological analysis of the joint fluid is not yet available in most healthcare facilities. We propose effective solutions that are scientifically valid, adapted to the country's socioeconomic conditions and current health situation, while taking international recommendations into consideration. We propose that the few university hospitals with rheumatology departments and good reference laboratories should be supported to participate in a pilot program to compile data to establish the clinical and bacteriological profiles of septic arthritis here. In lower level health centers where bacteriological examinations of the joint fluid and other complementary tests are more or less impossible, a diagnosis of septic arthritis is mainly based on clinical findings. Accordingly, all diagnosis and management should be centralized in these reference centers, which will allow the adaptation and progressive update of guidelines for the management of septic arthritis. [ABSTRACT FROM AUTHOR]
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- 2019
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15. Bactériologie et distribution d'eau potable La mesure de la qualité de l'eau à Mons (Belgique) au XIXe siècle (1870-1914).
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HONNORÉ, Laurent
- Abstract
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- 2019
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16. Calf and dam characteristics and calf transport age affect immunoglobulin titers and hematological parameters of veal calves
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Marcato, F, van den Brand, H, Kemp, B, Engel, B, Schnabel, S K, Jansen, C A, Rutten, V P M G, Koets, A P, Hoorweg, F A, de Vries-Reilingh, G, Wulansari, A, Wolthuis-Fillerup, M, van Reenen, K, Afd methoden en statistieken, dI&I RA-I&I I&I, Immunologie, FAH theoretische epidemiologie, dFAH I&I, Afd methoden en statistieken, dI&I RA-I&I I&I, Immunologie, FAH theoretische epidemiologie, and dFAH I&I
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Farms ,animal diseases ,Lymphocyte ,Ice calving ,Celbiologie en Immunologie ,robustness ,Biology ,Wiskundige en Statistische Methoden - Biometris ,Dierenwelzijn en gezondheid ,Animal science ,Pregnancy ,Immunity ,Genetics ,medicine ,Animals ,Animal Health & Welfare ,Adaptatiefysiologie ,Mathematical and Statistical Methods - Biometris ,Host Pathogen Interaction & Diagnostics ,transport age ,hematology ,Colostrum ,Bacteriologie ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,PE&RC ,Host Pathogen Interactie & Diagnostiek ,Red Meat ,Titer ,Biometris ,medicine.anatomical_structure ,Cell Biology and Immunology ,Animals, Newborn ,Immunoglobulin G ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,WIAS ,biology.protein ,Adaptation Physiology ,Cattle ,Female ,Animal Science and Zoology ,veal calf ,Antibody ,immunoglobulin ,Food Science - Abstract
This study aimed to investigate effects of transport age of calves (14 vs. 28 d), and of calf and dam characteristics, on immunoglobulin titers and hematological variables of veal calves. Calves (n = 683) were transported to a veal farm at 14 or 28 d of age. Natural antibodies N-IgG, N-IgM, and N-IgA against phosphorylcholine conjugated to bovine serum albumin (PC-BSA) were measured in serum of the dams 1 wk before calving and in first colostrum. These antibodies were also measured in serum of calves 1 wk after birth, 1 d before transport, and in wk 2 and 10 posttransport at the veal farm. Hematological variables were assessed in calves 1 d before transport and in wk 2 posttransport. One day before transport, titers of N-IgG, N-IgM, N-IgA, and neutrophil counts were higher, and lymphocyte counts were lower in 14-d-old calves compared with 28-d-old calves. In wk 2 at the veal farm, calves transported at 14 d of age had higher N-IgG titers and neutrophil counts, but lower N-IgM and N-IgA titers, and lymphocyte counts than calves transported at 28 d. In wk 1 and 1 d before transport, N-Ig in calves were positively related to N-Ig in colostrum. In wk 2 and 10 at the veal farm, N-IgG in calves was positively related to N-IgG in colostrum. The N-IgG titers in calves at the dairy farm were negatively related to the likelihood of being individually treated with antibiotics or other medicines at the veal farm. Our results suggest that calves transported to the veal farm at 28 d of age showed a more advanced development of their adaptive immunity than calves transported at 14 d of age. Quality of colostrum might have long-term consequences for N-IgG titers and immunity in veal calves.
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- 2022
17. Workshop report: Diseases of ornamental and laboratory fishes
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Gorgoglione, B., Whipps, C.M., Stinton, N., Ito, T., Dover, C.M., Baron, S., Yuasa, K., Adamek, M., Verner-Jeffreys, D., and Haenen, O.L.M.
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Host Pathogen Interaction & Diagnostics ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Bacteriologie ,Life Science ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Aquatic Science ,Small Animals ,Host Pathogen Interactie & Diagnostiek - Abstract
Ornamental and laboratory fish populations are part of the global trade and can spread pathogens around the world. Laboratory fish are widely used as model for biomedical research, which can be impacted by underestimated health conditions affecting the fish model. The global ornamental fish industry deals with a huge diversity of fish species. High mortality rate often causes significant losses, linked to polymicrobial infections facilitated by stressful conditions compromising host health, although accurate data on ornamental fish trade losses remain difficult to retrieve. Pet fish diseases can spread undetected between artificially recreated ecosystems, posing threats difficult to eradicate once established or when contaminating natural water systems. This 3-hour virtual workshop aimed at highlighting novel aspects of the pathobiology and diagnostics of infectious threats that could be spread through ornamental fishes and impact research using laboratory fish as biological models. In total, 108 participants from various countries all over the world joined this virtual workshop during the EAFP conference live streaming.
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- 2022
18. Differential susceptibility of SARS-CoV-2 in animals : Evidence of ACE2 host receptor distribution in companion animals, livestock and wildlife by immunohistochemical characterisation
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Sharon M. Brookes, Carina Conceicao, Simon Spiro, Alejandro Suárez-Bonnet, Joe James, Dalan Bailey, Fabian Z. X. Lean, Alexander M. P. Byrne, Anthony R. Fooks, Alejandro Núñez, Ian H. Brown, Stuart Ackroyd, Richard J. Delahay, Simon L. Priestnall, Nazia Thakur, Ethan Wrigglesworth, Sandra Vreman, and Wim H.M. van der Poel
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Sus scrofa ,ACE2 ,medicine.disease_cause ,Cat Diseases ,SARS‐CoV‐2 ,Chiroptera ,Acinonyx jubatus ,Mink ,Coronavirus ,Host cell membrane ,biology ,Bacteriologie ,Bacteriology, Host Pathogen Interaction & Diagnostics ,General Medicine ,Pets ,Virology & Molecular Biology ,medicine.anatomical_structure ,Spike Glycoprotein, Coronavirus ,immunohistochemistry ,Receptors, Virus ,Original Article ,Angiotensin-Converting Enzyme 2 ,hormones, hormone substitutes, and hormone antagonists ,Livestock ,Zoology ,Cattle Diseases ,Sheep Diseases ,Animals, Wild ,Celbiologie en Immunologie ,Meles ,Neovison ,biology.animal ,medicine ,Animals ,Host Pathogen Interaction & Diagnostics ,Sheep ,General Veterinary ,General Immunology and Microbiology ,SARS-CoV-2 ,Ferrets ,COVID-19 ,Bacteriology ,Original Articles ,biology.organism_classification ,Host Pathogen Interactie & Diagnostiek ,Virologie & Moleculaire Biologie ,Cell Biology and Immunology ,felids ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Cats ,WIAS ,Cattle ,Mesocricetus ,Respiratory tract ,mustelids - Abstract
Angiotensin converting enzyme 2 (ACE2) is a host cell membrane protein (receptor) that mediates the binding of coronavirus, most notably SARS coronaviruses in the respiratory and gastrointestinal tracts. Although SARS-CoV-2 infection is mainly confined to humans, there have been numerous incidents of spillback (reverse zoonoses) to domestic and captive animals. An absence of information on the spatial distribution of ACE2 in animal tissues limits our understanding of host species susceptibility. Here, we describe the distribution of ACE2 using immunohistochemistry (IHC) on histological sections derived from carnivores, ungulates, primates and chiroptera. Comparison of mink (Neovison vison) and ferret (Mustela putorius furo) respiratory tracts showed substantial differences, demonstrating that ACE2 is present in the lower respiratory tract of mink but not ferrets. The presence of ACE2 in the respiratory tract in some species was much more restricted as indicated by limited immunolabelling in the nasal turbinate, trachea and lungs of cats (Felis catus) and only the nasal turbinate in the golden Syrian hamster (Mesocricetus auratus). In the lungs of other species, ACE2 could be detected on the bronchiolar epithelium of the sheep (Ovis aries), cattle (Bos taurus), European badger (Meles meles), cheetah (Acinonyx jubatus), tiger and lion (Panthera spp.). In addition, ACE2 was present in the nasal mucosa epithelium of the serotine bat (Eptesicus serotinus) but not in pig (Sus scrofa domestica), cattle or sheep. In the intestine, ACE2 immunolabelling was seen on the microvillus of enterocytes (surface of intestine) across various taxa. These results provide anatomical evidence of ACE2expression in a number of species which will enable further understanding of host susceptibility and tissue tropism of ACE2 receptor-mediated viral infection
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- 2022
19. Efficacy of Phase I and Phase II Coxiella burnetii Bacterin Vaccines in a Pregnant Ewe Challenge Model
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Sarah E. Williams-Macdonald, Mairi Mitchell, David Frew, Javier Palarea-Albaladejo, David Ewing, William T. Golde, David Longbottom, Alasdair J. Nisbet, Morag Livingstone, Clare M. Hamilton, Stephen F. Fitzgerald, Søren Buus, Emil Bach, Annemieke Dinkla, Hendrik-Jan Roest, Ad P. Koets, and Tom N. McNeilly
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Host Pathogen Interaction & Diagnostics ,Pharmacology ,sheep ,Bacteriologie ,Immunology ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,phase I ,phase II ,Host Pathogen Interactie & Diagnostiek ,Coxiella burnetii ,Infectious Diseases ,vaccine ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Drug Discovery ,Pharmacology (medical) ,Q-fever - Abstract
The bacterium Coxiella burnetii can cause the disease Q-fever in a wide range of animal hosts. Ruminants, including sheep, are thought to play a pivotal role in the transmission of C. burnetii to humans; however, the only existing livestock vaccine, namely, Coxevac® (Ceva Animal Health Ltd., Libourne, France), a killed bacterin vaccine based on phase I C. burnetii strain Nine-Mile, is only approved for use in goats and cattle. In this study, a pregnant ewe challenge model was used to determine the protective effects of Coxevac® and an experimental bacterin vaccine based on phase II C. burnetii against C. burnetii challenge. Prior to mating, ewes (n = 20 per group) were vaccinated subcutaneously with either Coxevac®, the phase II vaccine, or were unvaccinated. A subset of pregnant ewes (n = 6) from each group was then challenged 151 days later (~100 days of gestation) with 106 infectious mouse doses of C. burnetii, Nine-Mile strain RSA493. Both vaccines provided protection against C. burnetii challenge as measured by reductions in bacterial shedding in faeces, milk and vaginal mucus, and reduced abnormal pregnancies, compared to unvaccinated controls. This work highlights that the phase I vaccine Coxevac® can protect ewes against C. burnetii infection. Furthermore, the phase II vaccine provided comparable levels of protection and may offer a safer and cost-effective alternative to the currently licensed vaccine.
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- 2023
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20. Intracellular Transposition of Mobile Genetic Elements Associated with the Colistin Resistance Gene mcr-1
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Richard N. Goodman, Supathep Tansirichaiya, Michael S. M. Brouwer, and Adam P. Roberts
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Host Pathogen Interaction & Diagnostics ,Microbiology (medical) ,General Immunology and Microbiology ,Ecology ,Physiology ,Bacteriologie ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Cell Biology ,Host Pathogen Interactie & Diagnostiek ,Infectious Diseases ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Genetics ,Life Science - Abstract
Mobile colistin resistance (mcr) genes are often located on conjugative plasmids, where their association with insertion sequences enables intercellular and intracellular dissemination throughout bacterial replicons and populations. Multiple mcr genes have been discovered in every habitable continent, in many bacterial species, on both plasmids and integrated into the chromosome. Previously, we showed the intercellular transfer of mcr-1 on an IncI1 plasmid, pMCR-E2899, between strains of Escherichia coli. Characterizing the intracellular dynamics of mcr-1 transposition and recombination would further our understanding of how these important genes move through bacterial populations and whether interventions can be put in place to stop their spread. In this study, we aimed to characterize transfer events from the mcr-1-containing transposon Tn7511 (ISApl1-mcr-1-pap2-ISApl1), located on plasmid pMCR-E2899, using the pBACpAK entrapment vector. Following the transformation of pBACpAK into our DH5α-Azir/pMCR-E2899 transconjugant, we captured ISApl1 in pBACpAK multiple times and, for the first time, observed the ISApl1-mediated transfer of the mcr-1 transposon (Tn7511) into the chromosome of E. coli DH5α. Whole-genome sequencing allowed us to determine consensus insertion sites of ISApl1 and Tn7511 in this strain, and comparison of these sites allowed us to explain the transposition events observed. These observations reveal the consequences of ISApl1 transposition within and between multiple replicons of the same cell and show mcr-1 transposition within the cell as part of the novel transposon Tn7511.
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- 2023
21. Pathogenesis of wild-type- and vaccine-based recombinant peste des petits ruminants virus (PPRV) expressing EGFP in experimentally infected domestic goats
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Katharina S. Schmitz, Phaedra L. Eblé, René G. P. van Gennip, Mieke A. Maris-Veldhuis, Rory D. de Vries, Lucien J. M. van Keulen, Rik L. de Swart, Piet A. van Rijn, and Virology
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Host Pathogen Interaction & Diagnostics ,pathogenesis ,Bacteriologie ,goat ,Tbilisi/2016 ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Host Pathogen Interactie & Diagnostiek ,Virology & Molecular Biology ,Virologie & Moleculaire Biologie ,SDG 3 - Good Health and Well-being ,zebra stripes ,Virology ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,PPR virus ,Nigeria 75/1 - Abstract
Peste des petits ruminants virus (PPRV) is a highly contagious morbillivirus related to measles and canine distemper virus, mostly affecting small ruminants. The corresponding PPR disease has a high clinical impact in goats and is characterized by fever, oral and nasal erosions, diarrhoea and pneumonia. In addition, massive infection of lymphoid tissues causes lymphopaenia and immune suppression. This results in increased susceptibility to secondary bacterial infections, explaining the observed high mortality in some outbreaks. We studied the pathogenesis of PPR by experimental inoculation of Dutch domestic goats with a recombinant virulent PPRV strain modified to express EGFP and compared it to an EGFP-expressing vaccine strain of PPRV. After intratracheal inoculation with virulent PPRV, animals developed fever, viraemia and leucopaenia, and shed virus from the respiratory and gastro-intestinal tracts. Macroscopic evaluation of fluorescence at the peak of infection 7 days post-inoculation (dpi) showed prominent PPRV infection of the respiratory tract, lymphoid tissues, gastro-intestinal tract, mucosae and skin. Flow cytometry of PBMCs collected over time demonstrated a cell-associated viraemia mediated by infected lymphocytes. At 14 dpi, pathognomonic zebra stripes were detected in the mucosa of the large intestine. In contrast, vaccine strain-inoculated goats remained largely macroscopically fluorescence negative and did not present clinical signs. A low-level viraemia was detected by flow cytometry, but at necropsy no histological lesions were observed. Animals from both groups seroconverted as early as 7 dpi and sera efficiently neutralized virulent PPRV in vitro. Combined, this work presents a study of the pathogenesis of wild type- and vaccine-based PPRV in its natural host. This study shows the strength of recombinant EGFP-expressing viruses in fluorescence-guided pathogenesis studies.
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- 2023
22. Tularemia Transmission to Humans, the Netherlands, 2011-2021
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Jolianne M. Rijks, Anna D. Tulen, Daan W. Notermans, Frans A.G. Reubsaet, Maaike C. de Vries, Miriam G.J. Koene, Corien M. Swaan, and Miriam Maas
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Host Pathogen Interaction & Diagnostics ,Microbiology (medical) ,Epidemiology ,Bacteriologie ,the Netherlands ,transmission ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Host Pathogen Interactie & Diagnostiek ,tularemia ,zoonoses ,Infectious Diseases ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Animals ,Humans ,Life Science ,human ,ecology ,Francisella tularensis ,bacteria ,Netherlands - Abstract
We used national registry data on human cases of Francisella tularensis subspecies holarctica infection to assess transmission modes among all 26 autochthonous cases in the Netherlands since 2011. The results indicate predominance of terrestrial over aquatic animal transmission sources. We recommend targeting disease-risk communication toward hunters, recreationists, and outdoor professionals.
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- 2023
23. Mapping of foot-and-mouth disease virus antigenic sites recognized by single-domain antibodies reveals different 146S particle specific sites and particle flexibility
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Harmsen, Michiel M., Li, Haozhou, Sun, Shiqi, van der Poel, Wim H.M., and Dekker, Aldo
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Host Pathogen Interaction & Diagnostics ,epitope ,General Veterinary ,Kwantitatieve Veterinaire Epidemiologie ,Bacteriologie ,Laboratory of Virology ,Quantitative Veterinary Epidemiology ,neutralizing antibody ,Bacteriology ,VHH ,Bacteriology, Host Pathogen Interaction & Diagnostics ,PE&RC ,Host Pathogen Interactie & Diagnostiek ,Virology & Molecular Biology ,Virologie & Moleculaire Biologie ,Laboratorium voor Virologie ,nanobody ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,ELISA ,foot-and-mouth disease virus (FMDV) ,XL-MS - Abstract
Vaccination with intact (146S) foot-and-mouth disease virus (FMDV) particles is used to control FMD. However, 146S particles easily dissociate into stable pentameric 12S particles which are less immunogenic. We earlier isolated several single-domain antibody fragments (VHHs) that specifically bind either 146S or 12S particles. These particle-specific VHHs are excellent tools for vaccine quality control. In this study we mapped the antigenic sites recognized by these VHHs by competition ELISAs, virus neutralization, and trypsin sensitivity of epitopes. We included two previously described monoclonal antibodies (mAbs) that are either 12S specific (mAb 13A6) or 146S specific (mAb 9). Although both are 12S specific, the VHH M3F and mAb 13A6 were found to bind independent antigenic sites. M3F recognized a non-neutralizing and trypsin insensitive site whereas mAb 13A6 recognized the trypsin sensitive VP2 N-terminus. The Asia1 146S-specific site was trypsin sensitive, neutralizing and also recognized by the VHH M8F, suggesting it involves the VP1 GH-loop. The type A 146S-specific VHHs recognized two independent antigenic sites that are both also neutralizing but trypsin insensitive. The major site was further mapped by cross-linking mass spectrometry (XL-MS) of two broadly strain reactive 146S-specific VHHs complexed to FMDV. The epitopes were located close to the 2-fold and 3-fold symmetry axes of the icosahedral virus 3D structure, mainly on VP2 and VP3, overlapping the earlier identified mAb 9 site. Since the epitopes were located on a single 12S pentamer, the 146S specificity cannot be explained by the epitope being split due to 12S pentamer dissociation. In an earlier study the cryo-EM structure of the 146S-specific VHH M170 complexed to type O FMDV was resolved. The 146S specificity was reported to be caused by an altered conformation of this epitope in 12S and 146S particles. This mechanism probably also explains the 146S-specific binding by the two type A VHHs mapped by XL-MS since their epitopes overlapped with the epitope recognized by M170. Surprisingly, residues internal in the 146S quaternary structure were also cross-linked to VHH. This probably reflects particle flexibility in solution. Molecular studies of virus-antibody interactions help to further optimize vaccines and improve their quality control.
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- 2023
24. Systematic Review and Modelling of Age-Dependent Prevalence of Toxoplasma gondii in Livestock, Wildlife and Felids in Europe
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Filip Dámek, Arno Swart, Helga Waap, Pikka Jokelainen, Delphine Le Roux, Gunita Deksne, Huifang Deng, Gereon Schares, Anna Lundén, Gema Álvarez-García, Martha Betson, Rebecca K. Davidson, Adriana Györke, Daniela Antolová, Zuzana Hurníková, Henk J. Wisselink, Jacek Sroka, Joke W. B. van der Giessen, Radu Blaga, and Marieke Opsteegh
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Microbiology (medical) ,Host Pathogen Interaction & Diagnostics ,pig ,sheep ,General Immunology and Microbiology ,seroprevalence ,Bacteriologie ,goat ,cat ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Host Pathogen Interactie & Diagnostiek ,meta-analysis ,ToxSauQMRA ,Infectious Diseases ,systematic review ,cattle ,Bayesian model ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Immunology and Allergy ,Inmunología veterinaria ,Parasitología ,toxoplasmosis ,Molecular Biology - Abstract
Toxoplasma gondii is a zoonotic parasite of importance to both human and animal health. The parasite has various transmission routes, and the meat of infected animals appears to be a major source of human infections in Europe. We aimed to estimate T. gondii prevalence in a selection of animal host species. A systematic literature review resulting in 226 eligible publications was carried out, and serological data were analyzed using an age-dependent Bayesian hierarchical model to obtain estimates for the regional T. gondii seroprevalence in livestock, wildlife, and felids. Prevalence estimates varied between species, regions, indoor/outdoor rearing, and types of detection methods applied. The lowest estimated seroprevalence was observed for indoor-kept lagomorphs at 4.8% (95% CI: 1.8–7.5%) and the highest for outdoor-kept sheep at 63.3% (95% CI: 53.0–79.3%). Overall, T. gondii seroprevalence estimates were highest within Eastern Europe, whilst being lowest in Northern Europe. Prevalence data based on direct detection methods were scarce and were not modelled but rather directly summarized by species. The outcomes of the meta-analysis can be used to extrapolate data to areas with a lack of data and provide valuable inputs for future source attribution approaches aiming to estimate the relative contribution of different sources of T. gondii human infection.
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- 2023
25. Antimicrobial resistance in Campylobacter fetus : Emergence and genomic evolution
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van der Graaf-van Bloois, Linda, Duim, Birgitta, Looft, Torey, Veldman, Kees T, Zomer, Aldert L, Wagenaar, Jaap A, Klinische infectiologie en microb. lab., and Klinische infectiologie en microb. lab.
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Host Pathogen Interaction & Diagnostics ,whole genome sequencing ,Campylobacter fetus ,ECOFF ,plasmid ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Bacteriologie ,Bacteriology ,General Medicine ,Bacteriology, Host Pathogen Interaction & Diagnostics ,antimicrobial resistance ,Host Pathogen Interactie & Diagnostiek - Abstract
Campylobacter fetus is a pathogen, which is primarily associated with fertility problems in sheep and cattle. In humans, it can cause severe infections that require antimicrobial treatment. However, knowledge on the development of antimicrobial resistance in C. fetus is limited. Moreover, the lack of epidemiological cut-off values (ECOFFs) and clinical breakpoints for C. fetus hinders consistent reporting about wild-type and non-wild-type susceptibility. The aim of this study was to determine the phenotypic susceptibility pattern of C. fetus and to determine the C. fetus resistome [the collection of all antimicrobial resistance genes (ARGs) and their precursors] to describe the genomic basis of antimicrobial resistance in C. fetus isolates over time. Whole-genome sequences of 295 C . fetus isolates, including isolates that were isolated in the period 1939 till the mid 1940s, before the usage of non-synthetic antimicrobials, were analysed for the presence of resistance markers, and phenotypic antimicrobial susceptibility was obtained for a selection of 47 isolates. C. fetus subspecies fetus (Cff) isolates showed multiple phenotypic antimicrobial resistances compared to C. fetus subspecies venerealis (Cfv) isolates that were only intrinsic resistant to nalidixic acid and trimethoprim. Cff isolates showed elevated minimal inhibitory concentrations for cefotaxime and cefquinome that were observed in isolates from 1943 onwards, and Cff isolates contained gyrA substitutions, which conferred resistance to ciprofloxacin. Resistances to aminoglycosides, tetracycline and phenicols were linked to acquired ARGs on mobile genetic elements. A plasmid-derived tet(O) gene in a bovine Cff isolate in 1999 was the first mobile genetic element observed, followed by detection of mobile elements containing tet(O)-aph(3′)-III and tet(44)-ant(6)-Ib genes, and a plasmid from a single human isolate in 2003, carrying aph(3′)-III-ant(6)-Ib and a chloramphenicol resistance gene (cat). The presence of ARGs in multiple mobile elements distributed among different Cff lineages highlights the risk for spread and further emergence of AMR in C. fetus . Surveillance for these resistances requires the establishment of ECOFFs for C. fetus .
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- 2023
26. The comparison and use of tools for quantification of antimicrobial use in Indonesian broiler farms
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Host Pathogen Interaction & Diagnostics ,antimicrobial stewardship ,Indonesia ,veterinary antimicrobial use monitoring ,poultry ,Bacteriologie ,Bacteriology ,antimicrobial resistance ,Host Pathogen Interactie & Diagnostiek - Abstract
Introduction: Indonesia has a large broiler industry with extensive antimicrobial use (AMU) according to empirical evidence. However, there are no quantitative data of on-farm AMU. Quantification of AMU at farm level is crucial to guide interventions on antimicrobial stewardship (AMS). The objective of this study was to compare on-farm AMU monitoring methods, to assess which monitoring method is best suited to gain insight in the quantitative AMU at farm level in medium-scale Indonesian broiler farms. Method: AMU was calculated using four different indicators—mg/PCU (mass-based), TFUDDindo (Treatment Frequency of Used Daily Dose, dose-based), TFDDDvet (Treatment Frequency of Defined Daily Dose, dose-based), and TFcount − based (count-based)—for the total AMU of 98 production cycles with an average length of 30 days. Results: Broilers were exposed to an average of 10 days of antimicrobial treatments per production cycle, whereas 60.8% of the antimicrobials belonged to the Highest Priority Critically Important Antimicrobials (HPCIAs). For each pair of indicators, the Spearman rank correlation coefficient was calculated to assess if the production cycles were ranked consistently in increasing AMU across the different indicators. The correlation varied between 0.4 and 0.8. Discussion: This study illustrates the considerable difference in the ranking of AMU between the different indicators. In a setting comparable to medium-scale broiler farms in Indonesia, where resources are scarce and there is no professional oversight, the TFcount − based method is best suitable. Before implementing an AMU monitoring method, careful consideration of the use-indicators is paramount to achieve fair benchmarking.
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- 2023
27. Building an International One Health Strain Level Database to Characterise the Epidemiology of AMR Threats : ESBL—AmpC Producing E. coli as An Example—Challenges and Perspectives
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Sara Perestrelo, Ana Amaro, Michael S. M. Brouwer, Lurdes Clemente, Ana Sofia Ribeiro Duarte, Annemarie Kaesbohrer, Renata Karpíšková, Vicente Lopez-Chavarrias, Dearbháile Morris, Deirdre Prendergast, Angela Pista, Leonor Silveira, Magdalena Skarżyńska, Rosemarie Slowey, Kees T. Veldman, Magdalena Zając, Catherine Burgess, and Julio Alvarez
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Microbiology (medical) ,Host Pathogen Interaction & Diagnostics ,Monitoring ,Bacteriologie ,DiSCoVeR ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Biochemistry ,Microbiology ,Host Pathogen Interactie & Diagnostiek ,monitoring ,Infectious Diseases ,SDG 3 - Good Health and Well-being ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Escherichia coli ,Pharmacology (medical) ,One Health ,extended-spectrum beta-lactamase (ESBL) ,General Pharmacology, Toxicology and Pharmaceutics ,AmpC beta-lactamase (AmpC) ,Extended-spectrum beta-lactamase (ESBL) ,Resistant Escherichia-Coli ,Spectrum Beta-Lactamase ,Antimicrobial Resistance ,Antibiotic-Resistance ,Enterobacteriaceae ,Animals ,Food ,Environment ,Prevalence ,Carriage - Abstract
Antimicrobial resistance (AMR) is one of the top public health threats nowadays. Among the most important AMR pathogens, Escherichia coli resistant to extended spectrum cephalosporins (ESC-EC) is a perfect example of the One Health problem due to its global distribution in animal, human, and environmental sources and its resistant phenotype, derived from the carriage of plasmid-borne extended-spectrum and AmpC β-lactamases, which limits the choice of effective antimicrobial therapies. The epidemiology of ESC-EC infection is complex as a result of the multiple possible sources involved in its transmission, and its study would require databases ideally comprising information from animal (livestock, companion, wildlife), human, and environmental sources. Here, we present the steps taken to assemble a database with phenotypic and genetic information on 10,763 ESC-EC isolates retrieved from multiple sources provided by 13 partners located in eight European countries, in the frame of the DiSCoVeR Joint Research project funded by the One Health European Joint Programme (OH-EJP), along with its strengths and limitations. This database represents a first step to help in the assessment of different geographical and temporal trends and transmission dynamics in animals and humans. The work performed highlights aspects that should be considered in future international efforts, such as the one presented here.
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- 2023
28. Why Veterinarians (Do Not) Adhere to the Clinical Practice Streptococcus suis in Weaned Pigs Guideline : A Qualitative Study
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Wayop, Isaura Y A, de Vet, Emely, Wagenaar, Jaap A, Speksnijder, David C, Klinische infectiologie en microb. lab., and Klinische infectiologie en microb. lab.
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Microbiology (medical) ,veterinary guidelines ,S. suis ,WASS ,Biochemistry ,Microbiology ,theoretical domains framework ,implementation strategy ,Pharmacology (medical) ,General Pharmacology, Toxicology and Pharmaceutics ,Consumption and Healthy Lifestyles ,Host Pathogen Interaction & Diagnostics ,Dutch veterinarians ,Bacteriologie ,Bacteriology ,determinants ,Bacteriology, Host Pathogen Interaction & Diagnostics ,antimicrobial use ,Host Pathogen Interactie & Diagnostiek ,Dutch pig industry ,antimicrobial stewardship ,Infectious Diseases ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Consumptie en Gezonde Leefstijl ,qualitative research - Abstract
The Netherlands has been very successful in the last decade in reducing antimicrobial use in animals. On about a quarter of farms, antimicrobial use in weaned pigs remains relatively high. As Streptococcus suis (S. suis) infections are responsible for a high consumption of antimicrobials, a specific veterinary guideline to control S. suis was developed, but seemed to be poorly adopted by veterinarians. Guided by the theoretical domains framework, the aim of this study was to identify determinants influencing veterinarians’ adherence to this guideline. We interviewed 13 pig veterinarians. Interviewees described multiple approaches to managing S. suis problems and adherence to the guideline. Mentioned determinants could be categorized into 12 theoretical domains. The following six domains were mentioned in all interviews: knowledge, skills, beliefs about capabilities, beliefs about consequences, social influences, and environmental context and resources. The insights derived from this study are relevant for understanding factors influencing veterinarians’ adoption of scientific evidence and guidelines and can be used to develop evidence-based implementation strategies for veterinary guidelines.
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- 2023
29. Proof of concept for multiplex detection of antibodies against Chlamydia species in chicken serum using a bead-based suspension array with peptides as antigens
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Fimme J. van der Wal, René P. Achterberg, Jeanet A. van der Goot, Annemieke Dinkla, Ruth Bossers-de Vries, Conny van Solt-Smits, Alex Bossers, and Marloes Heijne
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Host Pathogen Interaction & Diagnostics ,Epidemiologie ,Diagnostiek & Crisisorganisatie ,General Veterinary ,Epidemiology ,Bioinformatica & Diermodellen ,suspension array ,Bacteriologie ,serology ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Chicken ,Host Pathogen Interactie & Diagnostiek ,peptide ,Virology & Molecular Biology ,Diagnostics & Crisis Organization ,Virologie & Moleculaire Biologie ,antigen ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Bio-informatics & Animal models ,serum antibodies ,Epidemiology, Bio-informatics & Animal models ,Chlamydia - Abstract
The available differentiating tests for Chlamydia are based on detection of genetic material and only give information about the actual infection status, but reveal nothing of past infections. As the use of serological methods increases the window of detection, the goal of this study was to investigate if it is possible to develop a differentiating serological test for antibodies against Chlamydia species in chicken sera. Focus was on C. psittaci, C. gallinacea, and two closely related species, i.e. C. abortus and C. avium. To enable differentiating serology, a bead-based Luminex suspension array was constructed, using peptides as antigens, derived from known immunoreactive Chlamydia proteins. For the majority of these peptides, species-specific seroreactivity in mammalian sera has been reported in literature. The suspension array correctly identified antibodies against various Chlamydia species in sera from experimentally infected mice, and was also able to differentiate between antibodies against C. psittaci and C. gallinacea in sera from experimentally infected chickens. In field sera, signals were difficult to interpret as insufficient sera from experimentally infected chickens were available for evaluating the seroreactivity of all peptides. Nevertheless, results of the suspension array with field sera are supported by published data on the occurrence of C. gallinacea in Dutch layers, thereby demonstrating the proof of concept of multiplex serology for Chlamydial species in poultry.
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- 2023
30. Bacterial diseases of tilapia, their zoonotic potential and risk of antimicrobial resistance
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Olga L. M. Haenen, Ha Thanh Dong, Truong Dinh Hoai, Margaret Crumlish, Iddya Karunasagar, Timothy Barkham, Swaine L. Chen, Ruth Zadoks, Andreas Kiermeier, Bing Wang, Esther Garrido Gamarro, Masami Takeuchi, Mohammad Noor Amal Azmai, Belén Fouz, Rolando Pakingking, Zeng Wei Wei, and Melba G. Bondad‐Reantaso
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Host Pathogen Interaction & Diagnostics ,Ecology ,Bacteriologie ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Life Science ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Management, Monitoring, Policy and Law ,Aquatic Science ,Host Pathogen Interactie & Diagnostiek - Abstract
Tilapia culture is an important source of income and nutrition to many rural families. Since 2000, the production of tilapia increased and reached domestic and global markets. Major farmed species is Nile tilapia (Oreochromis niloticus), in earthen ponds and cage cultures. Intensification contributed to global tilapia disease outbreaks, with bacterial infections causing mortalities and morbidities, threatening sustainable production. At tilapia farms, high nutrient concentrations, water temperature and fish densities enhance bacterial growth including virulent bacterial clones and potential zoonotic bacteria. Global warming favours this. This review respectively provides a comprehensive overview of the most common and emerging bacterial pathogens, diseases, clinical presentations and diagnostics of tilapia, including bacteria and diseases with zoonotic potential. First, common bacterial disease outbreaks, including streptococcosis, motile Aeromonas septicaemia, francisellosis, columnaris disease and vibriosis are described. Then, information on emerging bacterial infections of concern for tilapia, like edwardsiellosis through Edwardsiella ictaluri and E. tarda, as well as Aeromonas schubertii is provided. Reports of infectious bacterial tilapia disease outbreaks from other bacteria, including Lactococcus garvieae, Aerococcus viridans, Pseudomonas spp., Mycobacterium marinum and Chlamydia spp., and others are reviewed. Furthermore, bacteria with zoonotic potential, like Streptococcus agalactiae ST283, S. iniae, Aeromonas sp., E. tarda, Vibrio vulnificus pathovar (pv) piscis and M. marinum are included in the review, to provide the most current overview of the disease risks affecting production and post-harvest stages. Additionally, the status and risks of antimicrobial resistance in bacteria from tilapia and other cultured fish through imprudent use of antibiotics, and its future at a global level are provided.
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- 2023
31. Fast and accurate identification by MALDI-TOF of the zoonotic serovar E of Vibrio vulnificus linked to eel culture
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Mirjam Boonstra, Belén Fouz, Betty van Gelderen, Inger Dalsgaard, Lone Madsen, Eva Jansson, Carmen Amaro, and Olga Haenen
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MALDI-TOF ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,Serovar E ,Epidemiology ,Bioinformatica & Diermodellen ,Veterinary (miscellaneous) ,Zoonotic ,Bacteriologie ,Eel ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Aquatic Science ,Host Pathogen Interactie & Diagnostiek ,PCR ,Epidemiologie, Bioinformatica & Diermodellen ,Bio-informatics & Animal models ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Life Science ,Epidemiology, Bio-informatics & Animal models ,Serotyping ,Vibrio vulnificus - Abstract
Vibrio vulnificus is a zoonotic pathogen that can cause death by septicaemia in farmed fish (mainly eels) and humans. The zoonotic strains that have been isolated from diseased eels and humans after eel handling belong to clade E (or serovar E (SerE)), a clonal complex within the pathovar (pv.) piscis. The aim of this study was to evaluate the accuracy of MALDI-TOF mass spectrometry (MS) in the identification of SerE, using the other two main pv. piscis-serovars (SerA and SerI) from eels as controls. MALDI-TOF data were compared with known serologic and genetic data of five pv. piscis isolates or strains, and with the non pv. piscis reference strain. Based on multiple spectra analysis, we found serovar-specific peaks that were of ~3098 Da and ~ 4045 Da for SerE, of ~3085 Da and ~ 4037 Da for SerA, and of ~3085 Da and ~ 4044 Da for SerI. Therefore, our results demonstrate that MALDI-TOF can be used to identify SerE and could also help in the identification of the other serovars of the species. This means that zoonosis due to V. vulnificus could be prevented by using MALDI-TOF, as action can be taken immediately after the isolation of a possible zoonotic V. vulnificus strain.
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- 2023
32. Antibiotic resistance genes, mobile elements, virulence genes, and phages in cultivated ESBL-producing Escherichia coli of poultry origin in Kwara State, North Central Nigeria
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Ahmad Ibrahim Al-Mustapha, Ibrahim Adisa Raufu, Oluwaseun Adeolu Ogundijo, Ismail Ayoade Odetokun, Ananda Tiwari, Michael S.M. Brouwer, Victoria Adetunji, and Annamari Heikinheimo
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Host Pathogen Interaction & Diagnostics ,Bacteriologie ,Nigeria ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,General Medicine ,Microbiology ,Coliphages ,Host Pathogen Interactie & Diagnostiek ,Poultry ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,ARGs ,AMR ,ESBL- E. coli ,One-health ,WGS ,Food Science - Abstract
The paucity of information on the genomic diversity of drug-resistant bacteria in most food-producing animals, including poultry in Nigeria, has led to poor hazard characterization and the lack of critical control points to safeguard public health. Hence, this study used whole genome sequencing (WGS) to assess the presence and the diversity of antibiotic resistance genes, mobile genetic elements, virulence genes, and phages in Extended Spectrum Beta Lactamase producing Escherichia coli (ESBL – E. coli) isolates obtained from poultry via the EURL guideline of 2017 in Ilorin, Nigeria. The prevalence of ESBL – E. coli in poultry was 10.5 % (n = 37/354). The phenotypic antibiotic susceptibility testing showed that all the ESBL— E. coli isolates were multi-drug resistant (MDR). The in-silico analysis of the WGS raw-read data from 11 purposively selected isolates showed that the isolates had a wide array of ARGs that conferred resistance to beta-lactam antibiotics, and 8 other classes of antibiotics (fluoroquinolones, foliate pathway antagonists, aminoglycoside, phenicol, tetracycline, epoxide, macrolides, and rifamycin). All the ARGs were in the bacterial chromosome except in two isolates where plasmid-mediated quinolone resistance (PMQR) was detected. Two isolates carried the gyrAp.S83L mutation which confers resistance to certain fluoroquinolones. The mobilome consisted of several Col-plasmids and the predominant IncF plasmids belonged to the IncF64:A-:B27 sequence type. The virulome consisted of genes that function as adhesins, iron acquisition genes, toxins, and protectins. Intact phages were found in 8 of the 11 isolates and the phageome consisted of representatives of four families of viruses: Myoviridae (62.5 %, n = 5/8), Siphoviridae (37.5 %, n = 3/8), Inoviridae (12.5 %, n = 1), and Podoviridae (12.5 %, n = 1/8). ESBL - E. coli isolates harboured 1–5 intact phages and no ARGs were identified on any of the phages. Although five of the isolates belonged to phylogroup A, the isolates were diverse as they belonged to different serotype and sequence types. Our findings demonstrate the high genomic diversity of ESBL - E. coli of poultry origin in Ilorin, Nigeria. These diverse isolates harbor clinically relevant ARGs, mobile elements, virulence genes, and phages that may have detrimental zoonotic potentials on human health.
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- 2023
33. Highly Pathogenic Avian Influenza H5N1 Virus Infections in Wild Red Foxes (Vulpes vulpes) Show Neurotropism and Adaptive Virus Mutations
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Bordes, Luca, Vreman, Sandra, Heutink, Rene, Roose, Marit, Venema, Sandra, Pritz-Verschuren, Sylvia B E, Rijks, Jolianne M, Gonzales, José L, Germeraad, Evelien A, Engelsma, Marc, Beerens, Nancy, VPDC pathologie, and VPDC pathologie
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Microbiology (medical) ,fox ,Epidemiology ,Bioinformatica & Diermodellen ,Physiology ,Kwantitatieve Veterinaire Epidemiologie ,Bio-informatics & Animal models ,Genetics ,Life Science ,Epidemiology, Bio-informatics & Animal models ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,General Immunology and Microbiology ,Ecology ,Bacteriologie ,Quantitative Veterinary Epidemiology ,neurotropism ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Cell Biology ,HPAI H5N1 ,zoonotic infections ,Host Pathogen Interactie & Diagnostiek ,Virology & Molecular Biology ,Virologie & Moleculaire Biologie ,virology ,Infectious Diseases ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,WIAS - Abstract
During the 2020-2022 epizootic of highly pathogenic avian influenza virus (HPAI) several infections of mammalian species were reported in Europe. In the Netherlands, HPAI H5N1 virus infections were detected in three wild red foxes (Vulpes vulpes) that were submitted with neurological symptoms between December 2021 and February 2022. Histopathological analysis demonstrated the virus was mainly present in the brain, with limited or no detection in the respiratory tract and other organs. Phylogenetic analysis showed the three fox viruses were not closely related, but were related to HPAI H5N1 clade 2.3.4.4b viruses found in wild birds. In addition, limited virus shedding was detected suggesting the virus was not transmitted between the foxes. Genetic analysis demonstrated the presence of mammalian adaptation E627K in the polymerase basic two (PB2) protein of the two fox viruses. In both foxes the avian (PB2-627E) and the mammalian (PB2-627K) variant were present as a mixture in the virus population, which suggests the mutation emerged in these specific animals. The two variant viruses were isolated and virus replication and passaging experiments were performed. These experiments showed mutation PB2-627K increases replication of the virus in mammalian cell lines compared to the chicken cell line, and at the lower temperatures of the mammalian upper respiratory tract. This study showed the HPAI H5N1 virus is capable of adaptation to mammals, however more adaptive mutations are required to allow efficient transmission between mammals. Therefore, surveillance in mammals should be expanded to closely monitor the emergence of zoonotic mutations for pandemic preparedness.IMPORTANCEHighly pathogenic avian influenza (HPAI) viruses caused high mortality amongst wild birds in 2021-2022 in the Netherlands. Recently three wild foxes were found to be infected with HPAI H5N1 viruses, likely by feeding on infected birds. Although HPAI is a respiratory virus, in these foxes the viruses were mostly detected in the brain. Two viruses isolated from the foxes contained a mutation that is associated with adaptation to mammals. We show the mutant virus replicates better in mammalian cells than in avian cells, and at the lower body temperature of mammals. More mutations are required before viruses can transmit between mammals, or can be transmitted to humans. However, the infections in mammalian species should be closely monitored to swiftly detect mutations that may increase the zoonotic potential of the HPAI H5N1 viruses as these may threaten public health.
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- 2023
34. Data from: Genome-wide epitope mapping reveals significant diversity in antibody responses to Coxiella burnetii vaccination and infection
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Host Pathogen Interaction & Diagnostics ,Coxiella burnetii ,B cell epitope mapping ,Bacteriologie ,peptide microarray ,Health sciences ,serodiagnostic ,Bacteriology ,vaccination ,Host Pathogen Interactie & Diagnostiek - Abstract
Coxiella burnetii is an important zoonotic bacterial pathogen of global importance, causing the disease Q fever in a wide range of animal hosts. Ruminant livestock, in particular sheep and goats, are considered the main reservoir of infection. Vaccination is a key control measure and two commercial vaccines based on formalin-inactivated C. burnetii bacterins are currently available. However, their deployment is limited due to significant reactogenicity in individuals previously sensitized to C. burnetii antigens. Furthermore, these vaccines interfere with available serodiagnostic tests which are also based on C. burnetii bacterin preparations. Subunit vaccines based on recombinant proteins offer significant advantages, as they can be designed to reduce reactogenicity and can be co-designed with defined antigen serodiagnostic tests to allow discrimination between vaccinated and infected individuals. This study aimed to investigate the diversity of antibody responses to C. burnetii vaccination and/or infection in cattle, goats, humans, and sheep through genome-wide linear epitope mapping to identify candidate vaccine and diagnostic antigens within the predicted bacterial proteome. Using high-density peptide microarrays, we analyzed the seroreactivity in 156 serum samples from vaccinated and infected individuals to peptides derived from 2,092 ORFs in the C. burnetii genome. We found significant diversity in the antibody responses within and between species and across different C. burnetii exposure statuses. However, C. burnetii exposure did result in more uniform seroreactivity across species. Through the implementation of three different vaccine candidate methods, we identified 493 candidate protein antigens for protein subunit vaccine design or serodiagnostic, out of which 65 have been previously described. This is the first study to investigate seroreactivity against the entire C. burnetii genome presented as overlapping linear peptides and provides the basis for selection of antigen targets for next generation Q fever vaccines and diagnostic tests.
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- 2023
35. The potential of using E. coli as an indicator for the surveillance of antimicrobial resistance (AMR) in the environment
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Muna F Anjum, Heike Schmitt, Stefan Börjesson, Thomas U Berendonk, Erica Donner, Eliana Guedes Stehling, Patrick Boerlin, Edward Topp, Claire Jardine, Xuewen Li, Bing Li, Monika Dolejska, Jean-Yves Madec, Christophe Dagot, Sebastian Guenther, Fiona Walsh, Laura Villa, Kees Veldman, Marianne Sunde, Pawel Krzeminski, Dariusz Wasyl, Magdalena Popowska, Josef Järhult, Stefan Örn, Olfa Mahjoub, Wejdene Mansour, Đinh Nho Thái, Josefine Elving, and Karl Pedersen
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Host Pathogen Interaction & Diagnostics ,Microbiology (medical) ,Bacteriologie ,Bacteriology ,Monitoring system ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Biology ,Microbiology ,Host Pathogen Interactie & Diagnostiek ,Anti-Bacterial Agents ,Human health ,Infectious Diseases ,Antibiotic resistance ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Drug Resistance, Bacterial ,Environmental monitoring ,Escherichia coli ,Life Science ,Animals ,Humans ,Environmental planning ,Escherichia coli Infections - Abstract
To understand the dynamics of antimicrobial resistance (AMR), in a One-Health perspective, surveillance play an important role. Monitoring systems already exist in the human health and livestock sectors, but there are no environmental monitoring programs. Therefore there is an urgent need to initiate environmental AMR monitoring programs nationally and globally, which will complement existing systems in different sectors. However, environmental programs should not only identify anthropogenic influences and levels of AMR, but they should also allow for identification of transmissions to and from human and animal populations. In the current review we therefore propose using antimicrobial resistant Escherichia coli as indicators for monitoring occurrence and levels of AMR in the environment, including wildlife.
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- 2021
36. Co-occurrence of antibiotic and disinfectant resistance genes in extensively drug-resistant Escherichia coli isolated from broilers in Ilorin, North Central Nigeria
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Ahmad Ibrahim Al-Mustapha, Shafi Abdullah Alada, Ibrahim Adisa Raufu, Adedeji Nurudeen Lawal, Katarina Eskola, Michael SM Brouwer, Victoria Adetunji, Annamari Heikinheimo, Helsinki One Health (HOH), Food Hygiene and Environmental Health, Departments of Faculty of Veterinary Medicine, Equine and Small Animal Medicine, Helsinki Institute of Sustainability Science (HELSUS), and Zoonotic Antimicrobial Resistance
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Microbiology (medical) ,Host Pathogen Interaction & Diagnostics ,Immunology ,Bacteriologie ,Nigeria ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Multidrug resistance ,Antimicrobial resistance ,413 Veterinary science ,Microbiology ,Host Pathogen Interactie & Diagnostiek ,Poultry ,Anti-Bacterial Agents ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Escherichia coli ,Animals ,Humans ,Immunology and Allergy ,Disinfectant resistance ,One Health ,Chickens ,Disinfectants ,Fluoroquinolones - Abstract
Objectives: The occurrence of multidrug-resistant (MDR) bacteria in poultry poses the public health threat of zoonotic transmission to humans. Hence, this study assessed the occurrence of drug-resistant Escherichia coli in broilers in the largest live bird market in Kwara State, Nigeria in December 2020. Methods: Presumptive E. coli isolates were isolated using the European Union Reference Laboratory guideline of 2017 and confirmed via matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF/MS). Broth microdilution was performed on confirmed E. coli isolates to determine the minimum inhibitory concentration. Five extensively drug-resistant (XDR) isolates were selected for Illumina whole genome sequencing to predict the resistome, phylotype, sequence type, serotype, and diversity of mobile genetic elements in these isolates. Results: Of the 181 broiler caecal samples, 73 E. coli isolates were obtained, of which 67 (82.0%) and 37 (50.6%) were determined as MDR (resistant to at least three classes of antibiotics) and XDR (resistant to at least five classes of antibiotics), respectively. Whole genome sequencing revealed diverse sequence types, phylogroups, and serotypes (ST165/B1 - O80:H19, ST115/A - Unknown: H7, ST901/B1 - O109:H4, ST4087/F - O117:H42, and ST8324/A - O127:H42). The XDR E. coli isolates encoded resistance to fluoroquinolones, fosfomycin, sulfamethoxazole, ampicillin and cephalosporins, trimethoprim, aminoglycosides, chloramphenicol, tetracycline, and macrolides. Mutations in the gyr A gene conferring resistance to fluoroquinolones were also detected. There was a positive correlation between phenotypic resistance patterns and the antibiotic resistance genes that were detected in the sequenced isolates. The XDR isolates also harbored two disinfectant resistance genes ( qac E and sit ABCD) that conferred resistance to hydrogen peroxide and quaternary ammonium compounds, respectively. The genome of the XDR isolates harbored several mobile genetic elements and virulence-associated genes, which were conserved in all sequenced XDR isolates. Conclusions: This is the first report of co-carriage of antibiotic resistance genes and disinfectant resistance genes in E. coli isolated from broilers in Ilorin, Nigeria. Our findings suggest that poultry are potential carriers of clonally diverse, pathogenic, MDR/XDR E. coli, which may have detrimental zoonotic potentials on human health. (c) 2022 The Author(s). Published by Elsevier Ltd on behalf of International Society for Antimicrobial Chemotherapy. This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/ )
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- 2022
37. Bacteriological sampling of peritoneal dialysis fluids. How to limit negative-culture peritonitis rate?
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Antoine Grillon, Pierre Hugues Boyer, and Françoise Heibel
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dialyse péritonéale ,péritonite ,culture ,bacteriologie ,peritoneal dialysis ,bacteriology ,Internal medicine ,RC31-1245 - Abstract
Peritonitis is a major and serious complication in terms of morbi-mortality for patients treated with peritoneal dialysis. Their microbiological diagnosis is challenging for both the detection of the etiological agents and in interpreting positive cultures. Many microorganisms can cause this infection; usual micro-organisms such as coagulase-negative staphylococci or Enterobacteriaceae, but also ‘atypical’ bacteria, which culture or detection, is more tedious can be found. To identify the responsible bacteria, molecular biology and culture techniques can be set up. Molecular biology (particularly the sequencing of the universal 16s rDNA gene) makes it possible to identify atypical agents, but antimicrobial susceptibility testing cannot be performed following these technics. The culture of peritoneal dialysis fluids remains the ‘gold-standard’ for the diagnosis of these infections. Nevertheless this must be optimized to enhance its sensitivity. The etiological diagnosis of peritonitis in patients treated with peritoneal dialysis may be difficult, but modern microbiology combined with a bacterioclinical discussion allow the identification of the microorganism responsible for the infection in the great majority of the cases.
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- 2018
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38. Detection of an IMI-2 carbapenemase-producing Enterobacter asburiae at a Swedish feed mill
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Stefan Börjesson, Michael S. M. Brouwer, Emma Östlund, Jenny Eriksson, Josefine Elving, Oskar Karlsson Lindsjö, and Linda I. Engblom
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Host Pathogen Interaction & Diagnostics ,Microbiology (medical) ,clinical isolates ,Bacteriologie ,carbapenem resistance ,Enterobacter cloacae complex ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,bla ,Microbiology ,Host Pathogen Interactie & Diagnostiek ,plasmid ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,antimicrobial resistance ,environment - Abstract
Occurrence of multidrug resistant Enterobacteriaceae in livestock is of concern as they can spread to humans. A potential introduction route for these bacteria to livestock could be animal feed. We therefore wanted to identify if Escherichia spp., Enterobacter spp., Klebsiella spp., or Raoutella spp. with transferable resistance to extended spectrum cephalosporins, carbapenems or colistin could be detected in the environment at feed mills in Sweden. A second aim was to compare detected isolates to previous described isolates from humans and animals in Sweden to establish relatedness which could indicate a potential transmission between sectors and feed mills as a source for antibiotic resistant bacteria. However, no isolates with transferable resistance to extended-cephalosporins or colistin could be identified, but one isolate belonging to the Enterobacter cloacae complex was shown to be carbapenem-resistant and showing carbapenemase-activity. Based on sequencing by both short-read Illumina and long-read Oxford Nanopore MinIon technologies it was shown that this isolate was an E. asburiae carrying a blaIMI-2 gene on a 216 Kbp plasmid, designated pSB89A/IMI-2, and contained the plasmid replicons IncFII, IncFIB, and a third replicon showing highest similarity to the IncFII(Yp). In addition, the plasmid contained genes for various functions such as plasmid segregation and stability, plasmid transfer and arsenical transport, but no additional antibiotic resistance genes. This isolate and the pSB89A/IMI-2 was compared to three human clinical isolates positive for blaIMI-2 available from the Swedish antibiotic monitoring program Swedres. It was shown that one of the human isolates carried a plasmid similar with regards to gene content to the pSB89A/IMI-2 except for the plasmid transfer system, but that the order of genes was different. The pSB89A/IMI-2 did however share the same transfer system as the blaIMI-2 carrying plasmids from the other two human isolates. The pSB89A/IMI-2 was also compared to previously published plasmids carrying blaIMI-2, but no identical plasmids could be identified. However, most shared part of the plasmid transfer system and DNA replication genes, and the blaIMI-2 gene was located next the transcription regulator imiR. The IS3-family insertion element downstream of imiR in the pSB89A was also related to the IS elements in other blaIMI-carrying plasmids.
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- 2022
39. European-wide antimicrobial resistance monitoring in commensal Escherichia coli isolated from healthy food animals between 2004 and 2018
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De Jong, Anno, El Garch, Farid, Hocquet, Didier, Prenger-Berninghoff, Ellen, Dewulf, Jeroen, Migura, Lourdes, Perrin-Guyomard, Agnès, Veldman, Kees T, Janosi, Szilard, Skarzynska, Magdalena, Simjee, Shabbir, Moyaert, Hilde, Rose, Markus, EASSA Study Group, Producció Animal, and Sanitat Animal
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Microbiology (medical) ,Swine ,Microbial Sensitivity Tests ,SUSCEPTIBILITY ,CEPHALOSPORINS ,Ciprofloxacin ,Drug Resistance, Bacterial ,Trimethoprim, Sulfamethoxazole Drug Combination ,Escherichia coli ,Life Science ,Humans ,Animals ,Pharmacology (medical) ,Veterinary Sciences ,Escherichia coli Infections ,Pharmacology ,Host Pathogen Interaction & Diagnostics ,Bacteriologie ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Host Pathogen Interactie & Diagnostiek ,Anti-Bacterial Agents ,Infectious Diseases ,BACTERIA ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Cattle ,Ampicillin ,Chickens - Abstract
Objectives To describe the susceptibility of Escherichia coli to medically important antibiotics, collected over four periods (2004–2006, 2008–2009, 2013–2014, 2017–2018), from food-producing animals at slaughter. Methods Intestinal contents from cattle, pigs and broilers were randomly sampled (5–6 countries/host; ≥4 abattoirs/country; one sample/animal/farm) for isolation of Escherichia coli; antimicrobial susceptibilities were centrally determined by CLSI agar dilution. Clinical breakpoints (CLSI) and epidemiological cut-off values (EUCAST) were applied for data interpretation. Results In total, 10 613 E. coli strains were recovered. In broilers, resistance percentages were the lowest (P ≤ 0.01) in the latest time period. A significant decrease in MDR over time was also observed for broilers and a tendency for a decrease for pigs. Resistance to meropenem and tigecycline was absent, and resistance to azithromycin was 0.2%–2.0%. Also, low resistance to third-generation cephalosporins (1.1%–7.4%) was detected in broilers. Resistance to colistin varied between 0.1%–4.8%. E. coli from broilers showed high resistance to ciprofloxacin (7.3%–23.3%), whereas for cattle and pigs this was 0.2%–2.5%. Low/moderate resistance to chloramphenicol (9.3%–21.3%) and gentamicin (0.9%–7.0%) was observed in pigs and broilers. The highest resistance was noted for ampicillin (32.7%–65.3%), tetracycline (41.3%–67.5%), trimethoprim (32.0%–35.7%) and trimethoprim/sulfamethoxazole (27.5%–49.7%) from pigs and broilers, with marked country differences. MDR peaked in pigs and broilers with 24 and 26 phenotypes, with 21.9%–26.2% and 18.7%–34.1% resistance, respectively. Conclusions In this pan-EU survey antibiotic susceptibility of commensal E. coli varied largely between antibiotics, animal species and countries. Resistance to critically important antibiotics for human medicine was absent or low, except for ciprofloxacin in broilers and ampicillin in pigs and broilers.
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- 2022
40. O scurtă istorie a vaccinului.
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Tănase, Alexandra and Țărmure, Viorica
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Vaccines have an official history that started late in the 18th century. From the late 19th century, vaccines could be developed in the laboratory. However, in the 20th century, it became possible to develop vaccines based on immunologic markers. In the 21st century, molecular biology allows vaccine development that was not possible before. The story of the vaccine, however, began long ago, back in the year 1000, when the use of the smallpox practice, the predecessor of the vaccination, was discovered by the Chinese people. Vaccine safety incidents have pushed research into developing more and more secure vaccines. [ABSTRACT FROM AUTHOR]
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- 2018
41. Occupational and environmental exposure to SARS-CoV-2 in and around infected mink farms
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de Rooij, Myrna M T, Hakze-Van der Honing, Renate W, Hulst, Marcel M, Harders, Frank, Engelsma, Marc, van de Hoef, Wouter, Meliefste, Kees, Nieuwenweg, Sigrid, Oude Munnink, Bas B, van Schothorst, Isabella, Sikkema, Reina S, van der Spek, Arco N, Spierenburg, Marcel, Spithoven, Jack, Bouwstra, Ruth, Molenaar, Robert-Jan, Koopmans, Marion, Stegeman, Arjan, van der Poel, Wim H M, Smit, Lidwien A M, IRAS OH Epidemiology Microbial Agents, IRAS OH Epidemiology Chemical Agents, dIRAS RA-2, dIRAS RA-I&I RA, FAH veterinaire epidemiologie, dFAH AVR, dFAH I&I, IRAS OH Epidemiology Microbial Agents, IRAS OH Epidemiology Chemical Agents, dIRAS RA-2, dIRAS RA-I&I RA, FAH veterinaire epidemiologie, dFAH AVR, dFAH I&I, and Virology
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0301 basic medicine ,Bio Process Engineering ,Veterinary medicine ,Exposure Assessment ,Range (biology) ,Epidemiology ,animal diseases ,Kwantitatieve Veterinaire Epidemiologie ,viruses ,air pollution ,Air pollution ,medicine.disease_cause ,law.invention ,0302 clinical medicine ,law ,030212 general & internal medicine ,Mink ,skin and connective tissue diseases ,Netherlands ,biology ,Bacteriologie ,Dust ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Environmental exposure ,Virology & Molecular Biology ,Geography ,Transmission (mechanics) ,RNA, Viral ,Public Health ,Occupational exposure ,environment ,Animal Breeding & Genomics ,Air sampling ,Farms ,Bioinformatica & Diermodellen ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,farmers ,Respirable dust ,03 medical and health sciences ,SDG 3 - Good Health and Well-being ,Occupational Exposure ,Environmental health ,biology.animal ,Bio-informatics & Animal models ,medicine ,Animals ,Humans ,Epidemiology, Bio-informatics & Animal models ,Fokkerij & Genomica ,Environmental risk assessment ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,business.industry ,SARS-CoV-2 ,Environmental and Occupational Health ,fungi ,Public Health, Environmental and Occupational Health ,Quantitative Veterinary Epidemiology ,COVID-19 ,RNA ,Bacteriology ,Environmental Exposure ,Virology ,Host Pathogen Interactie & Diagnostiek ,respiratory tract diseases ,Virologie & Moleculaire Biologie ,030104 developmental biology ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,WIAS ,business - Abstract
ObjectiveUnprecedented SARS-CoV-2 infections in farmed minks raised immediate concerns regarding transmission to humans and initiated intensive environmental investigations to assess occupational and environmental exposure.MethodsAir sampling was performed at infected Dutch mink farms, at farm premises and at nearby residential sites. A range of other environmental samples were collected from minks’ housing units, including bedding materials. SARS-CoV-2 RNA was analysed in all samples by quantitative PCR.ResultsInside the farms, considerable levels of SARS-CoV-2 RNA were found in airborne dust, especially in personal inhalable dust samples (approximately 1000–10 000 copies/m3). Most of the settling dust samples tested positive for SARS-CoV-2 RNA (82%, 75 of 92). SARS-CoV-2 RNA was not detected in outdoor air samples, except for those collected near the entrance of the most recently infected farm. Many samples of minks’ housing units and surfaces contained SARS-CoV-2 RNA.ConclusionsInfected mink farms can be highly contaminated with SARS-CoV-2 RNA. This warns of occupational exposure, which was substantiated by considerable SARS-CoV-2 RNA concentrations in personal air samples. Dispersion of SARS-CoV-2 to outdoor air was found to be limited and SARS-CoV-2 RNA was not detected in air samples collected beyond farm premises, implying a negligible risk of environmental exposure to nearby communities. Our occupational and environmental risk assessment is in line with whole genome sequencing analyses showing mink-to-human transmission among farm workers, but no indications of direct zoonotic transmission events to nearby communities.
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- 2021
42. Transboundary Spread of Brucella canis through Import of Infected Dogs, the Netherlands, November 2016–December 2018
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van Dijk, Marloes, Engelsma, Marc Y, Visser, Vanessa X N, Keur, Ingrid, Holtslag, Marjolijn E, Willems, Nicole, Meij, Björn P, Willemsen, Peter T J, Wagenaar, Jaap A, Roest, Hendrik I J, Broens, Els M, LS Klinisch Onderzoek Wagenaar, Chirurgie, dCSCA AVR, dCSCA RMSC-1, Klinische infectiologie en microb. lab., dI&I I&I-4, Dep Infectieziekten Immunologie, LS Klinisch Onderzoek Wagenaar, Chirurgie, dCSCA AVR, dCSCA RMSC-1, Klinische infectiologie en microb. lab., dI&I I&I-4, and Dep Infectieziekten Immunologie
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Veterinary medicine ,Epidemiology ,Infectious and parasitic diseases ,RC109-216 ,0302 clinical medicine ,Taverne ,Dog Diseases ,Europe, Eastern ,030212 general & internal medicine ,bacteria ,Netherlands ,education.field_of_study ,Transmission (medicine) ,Bacteriologie ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Virology & Molecular Biology ,Infectious Diseases ,Canis ,Synopsis ,Brucella canis ,Medicine ,Canine brucellosis ,Microbiology (medical) ,Bioinformatica & Diermodellen ,Transboundary Spread of Brucella canis through Import of Infected Dogs, the Netherlands, November 2016–December 2018 ,030231 tropical medicine ,Population ,Biology ,Brucellosis ,03 medical and health sciences ,Dogs ,Bio-informatics & Animal models ,medicine ,Life Science ,Animals ,Epidemiology, Bio-informatics & Animal models ,education ,Genotyping ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,Romania ,the Netherlands ,Bacteriology ,medicine.disease ,biology.organism_classification ,Host Pathogen Interactie & Diagnostiek ,Virologie & Moleculaire Biologie ,zoonoses ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek - Abstract
Brucella canis had not been isolated in the Netherlands until November 2016, when it was isolated from a dog imported from Romania. Including this case, 16 suspected cases were notifi ed to the authorities during the following 25 months. Of these 16 dogs, 10 were seropositive; tracking investigations found another 8 seropositive littermates. All seropositive animals were rescue dogs imported from Eastern Europe. B. canis was cultured from urine, blood, and other specimens collected from the dogs. Genotyping of isolates revealed clustering by litter and country. Isolating B. canis in urine indicates that shedding should be considered when assessing the risk for zoonotic transmission. This case series proves introduction of B. canis into a country to which it is not endemic through import of infected dogs from B. canis-endemic areas, posing a threat to the naive autochthonous dog population and humans.
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- 2021
43. Transmissibility of tuberculosis among students and non-students: An occupational-specific mathematical modelling
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Chen, Qiuping, Yu, Shanshan, Rui, Jia, Guo, Yichao, Yang, Shiting, Abudurusuli, Guzainuer, Yang, Zimei, Liu, Chan, Luo, Li, Wang, Mingzhai, Lei, Zhao, Zhao, Qinglong, Gavotte, Laurent, Niu, Yan, Frutos, Roger, Chen, Tianmu, Chen, Qiuping, Yu, Shanshan, Rui, Jia, Guo, Yichao, Yang, Shiting, Abudurusuli, Guzainuer, Yang, Zimei, Liu, Chan, Luo, Li, Wang, Mingzhai, Lei, Zhao, Zhao, Qinglong, Gavotte, Laurent, Niu, Yan, Frutos, Roger, and Chen, Tianmu
- Abstract
Background: Recently, despite the steady decline in the tuberculosis (TB) epidemic globally, school TB outbreaks have been frequently reported in China. This study aimed to quantify the transmissibility of Mycobacterium tuberculosis (MTB) among students and non-students using a mathematical model to determine characteristics of TB transmission. Methods: We constructed a dataset of reported TB cases from four regions (Jilin Province, Xiamen City, Chuxiong Prefecture, and Wuhan City) in China from 2005 to 2019. We classified the population and the reported cases under student and non-student groups, and developed two mathematical models [nonseasonal model (Model A) and seasonal model (Model B)] based on the natural history and transmission features of TB. The effective reproduction number (Reff) of TB between groups were calculated using the collected data. Results: During the study period, data on 456,423 TB cases were collected from four regions: students accounted for 6.1% of cases. The goodness-of-fit analysis showed that Model A had a better fitting effect (P < 0.001). The average Reff of TB estimated from Model A was 1.68 [interquartile range (IQR): 1.20–1.96] in Chuxiong Prefecture, 1.67 (IQR: 1.40–1.93) in Xiamen City, 1.75 (IQR: 1.37–2.02) in Jilin Province, and 1.79 (IQR: 1.56–2.02) in Wuhan City. The average Reff of TB in the non-student population was 23.30 times (1.65/0.07) higher than that in the student population. Conclusions: The transmissibility of MTB remains high in the non-student population of the areas studied, which is still dominant in the spread of TB. TB transmissibility from the non-student-to-student-population had a strong influence on students. Specific interventions, such as TB screening, should be applied rigorously to control and to prevent TB transmission among students.
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- 2022
44. Succession in the caecal microbiota of developing broilers colonised by extended-spectrum β-lactamase-producing Escherichia coli
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Cardenas-Rey, Ingrid, Bello Gonzalez, Teresita de Jesus, Van der Goot, Jeanet, Ceccarelli, Daniela, Bouwhuis, Gerwin, Schillemans, Danielle, Jurburg, Stephanie, Veldman, Kees, De Visser, Arjan, and Brouwer, Michael
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Host Pathogen Interaction & Diagnostics ,Epidemiologie ,Diagnostiek & Crisisorganisatie ,Epidemiology ,Bioinformatica & Diermodellen ,Bacteriologie ,Bacteriology ,General Medicine ,Bacteriology, Host Pathogen Interaction & Diagnostics ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,PE&RC ,Laboratorium voor Erfelijkheidsleer ,Host Pathogen Interactie & Diagnostiek ,Diagnostics & Crisis Organization ,Epidemiologie, Bioinformatica & Diermodellen ,Bio-informatics & Animal models ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Life Science ,bacteria ,Epidemiology, Bio-informatics & Animal models ,Laboratory of Genetics ,AMR, broiler, microbiome - Abstract
Background Broilers are among the most common and dense poultry production systems, where antimicrobials have been used extensively to promote animal health and performance. The continuous usage of antimicrobials has contributed to the appearance of resistant bacteria, such as extended-spectrum β-lactamase-producing Escherichia coli (ESBL-Ec). Here, we studied the ESBL-Ec prevalence and successional dynamics of the caecal microbiota of developing broilers in a commercial flock during their production life cycle (0–35 days). Broilers were categorised as ESBL-Ec colonised (ESBL-Ec+) or ESBL-Ec non-colonised (ESBL-Ec−) by selective culturing. Using 16S rRNA gene sequencing, we i. compared the richness, evenness and composition of the caecal microbiota of both broilers’ groups and ii. assessed the combined role of age and ESBL-Ec status on the broilers’ caecal microbiota. Results From day two, we observed an increasing linear trend in the proportions of ESBL-Ec throughout the broilers' production life cycle, X2 (1, N = 12) = 28.4, p − broilers, but significant differences between both broilers’ groups were found exclusively on day three (Wilcoxon rank-sum test, p = 0.016). Bray–Curtis distance-based RDA (BC-dbRDA) showed no explanatory power of ESBL-Ec status, while age explained 14% of the compositional variation of the caecal microbiota, F (2, 66) = 6.47, p = 0.001. Conclusions This study assessed the role of ESBL-Ec in the successional dynamics of the caecal microbiota in developing broilers and showed that the presence of ESBL-Ec is associated with mild but consistent reductions in alpha diversity and with transient bacterial compositional differences. We also reported the clonal spread of ESBL-Ec and pointed to the farm environment as a likely source for ESBLs.
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- 2022
45. Signalling and responding to zoonotic threats using a One Health approach: a decade of the Zoonoses Structure in the Netherlands, 2011 to 2021
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van der Giessen, Joke, Vlaanderen, Frits, Kortbeek, Titia, Swaan, Corien, van den Kerkhof, Hans, Broens, Els, Rijks, Jolianne, Koene, Miriam, De Rosa, Mauro, Uiterwijk, Mathilde, Augustijn-Schretlen, Marieke, Maassen, Catharina, Klinische infectiologie en microb. lab., and Klinische infectiologie en microb. lab.
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Epidemiology ,Communicable Diseases, Emerging/epidemiology ,Netherlands/epidemiology ,Zoonoses Structure ,Communicable Diseases ,Communicable Diseases, Emerging ,Virology ,Zoonoses ,Animals ,Humans ,response to emerging zoonoses ,One Health ,Netherlands ,Host Pathogen Interaction & Diagnostics ,SARS-CoV-2 ,Bacteriologie ,Zoonoses/epidemiology ,Public Health, Environmental and Occupational Health ,COVID-19 ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,10 years experience ,Host Pathogen Interactie & Diagnostiek ,Emerging/epidemiology ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,One Health risk analysis system - Abstract
In the Netherlands, the avian influenza outbreak in poultry in 2003 and the Q fever outbreak in dairy goats between 2007 and 2010 had severe consequences for public health. These outbreaks led to the establishment of an integrated human-veterinary risk analysis system for zoonoses, the Zoonoses Structure. The aim of the Zoonoses Structure is to signal, assess and control emerging zoonoses that may pose a risk to animal and/or human health in an integrated One Health approach. The Signalling Forum Zoonoses (SO-Z), the first step of the Zoonoses Structure, is a multidisciplinary committee composed of experts from the medical, veterinary, entomology and wildlife domains. The SO-Z shares relevant signals with professionals and has monthly meetings. Over the past 10 years (June 2011 to December 2021), 390 different signals of various zoonotic pathogens in animal reservoirs and humans have been assessed. Here, we describe the Zoonoses Structure with examples from signals and responses for four zoonotic events in the Netherlands (tularaemia, Brucella canis, West Nile virus, and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)). This may serve as an example for other countries on how to collaborate in a One Health approach to signal and control emerging zoonoses.
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- 2022
46. Changes in Fecal Carriage of Extended-Spectrum β-Lactamase Producing Enterobacterales in Dutch Veal Calves by Clonal Spread of Klebsiella pneumoniae
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Teresita d.J. Bello Gonzalez, Arie Kant, Quillan Dijkstra, Francesca Marcato, Kees van Reenen, Kees T. Veldman, and Michael S. M. Brouwer
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Host Pathogen Interaction & Diagnostics ,Microbiology (medical) ,Dierenwelzijn en gezondheid ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Bacteriologie ,WIAS ,Life Science ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Animal Health & Welfare ,Microbiology ,Host Pathogen Interactie & Diagnostiek - Abstract
This study aimed to characterize the changes in fecal carriage of Extended-Spectrum β-Lactamase (ESBL) producing Enterobacterales (ESBL-PE) in a single Dutch veal calves. During the rearing period at the Dutch veal farm, a decrease in fecal carriage of cefotaxime-resistant Escherichia coli isolates was observed after 2 weeks at the veal farm, while an increase of cefotaxime-resistant Klebsiella pneumoniae isolates was demonstrated. E. coli and K. pneumoniae were isolated from rectal swabs collected from 110 veal calves in week 2, 6, 10, 18, and 24 after their arrival at the farm. ESBL-PE isolates were selectively cultured and identified by MALDI-TOF. ESBL genes were characterized by RT-PCR, PCRs, and amplicon sequencing. A total of 80 E. coli and 174 K. pneumoniae strains were isolated from 104 out of 110 veal calves. The prevalence of ESBL-E. coli decreased from week 2 (61%) to week 6 (7%), while an unexpected increase in ESBL-K. pneumoniae colonization was detected in week 6 (80%). The predominant ESBL genes detected in E. coli isolates were blaCTX-M-15 and the non-ESBL gene blaTEM-1a, while in K. pneumoniae blaCTX-M-14 gene was detected in all isolates. Four cefotaxime-resistant K. pneumoniae isolates were randomly selected and characterized in deep by transformation, PCR-based replicon typing, and whole-genome sequencing (WGS). The clonal relatedness of a subgroup of nine animals carrying K. pneumoniae ESBL genes was investigated by Multi Locus sequence typing (MLST). In four ESBL-K. pneumoniae isolates, blaCTX-M-14 was located on IncFIIK and IncFIINK plasmid replicons and the isolates were multi-drug resistant (MDR). MLST demonstrated a clonal spread of ESBL-K. pneumoniae ST107. To the best of our knowledge, this is the first study to report a change in fecal carriage of ESBL-PE over time in the same veal calf during the rearing period.
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- 2022
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47. Early immune responses in skin and lymph node after skin delivery of Toll-like receptor agonists in neonatal and adult pigs
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Kristina Ledl, Damien Collins, Johanna M.J. Rebel, Anne C. Moore, Ksenia Arkhipova, Norbert Stockhofe-Zurwieden, Kerstin Skovgaard, Dennis McDaid, Joanne McCaffrey, Huub F. J. Savelkoul, and Sandra Vreman
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Skin vaccination ,Swine ,Epidemiology ,medicine.medical_treatment ,Antibodies, Viral ,Dierenwelzijn en gezondheid ,0302 clinical medicine ,Neonatal ,030212 general & internal medicine ,Lymph node ,Adjuvant ,Toll-like receptor agonist ,Toll-like receptor ,integumentary system ,biology ,Toll-Like Receptors ,Vaccination ,Bacteriologie ,Bacteriology, Host Pathogen Interaction & Diagnostics ,Skin immunity ,3. Good health ,Infectious Diseases ,medicine.anatomical_structure ,Molecular Medicine ,Bioinformatica & Diermodellen ,030231 tropical medicine ,Porcine Reproductive and Respiratory Syndrome ,Celbiologie en Immunologie ,03 medical and health sciences ,Immune system ,SDG 3 - Good Health and Well-being ,Bio-informatics & Animal models ,medicine ,Animals ,Porcine respiratory and reproductive syndrome virus ,Epidemiology, Bio-informatics & Animal models ,Animal Health & Welfare ,Antigen-presenting cell ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,General Veterinary ,General Immunology and Microbiology ,business.industry ,Immunity ,Public Health, Environmental and Occupational Health ,Viral Vaccines ,Bacteriology ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,Host Pathogen Interactie & Diagnostiek ,Cell Biology and Immunology ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Immunology ,WIAS ,Lymph Nodes ,business - Abstract
The skin is potentially an important vaccine delivery route facilitated by a high number of resident antigen presenting cells (APCs), which are known to be stimulated by different Toll-like receptor agonists (TLRa). In this study, neonatal and adult pigs were vaccinated in the skin using dissolving microneedle patches to investigate the immuno-stimulatory potential of different TLRa and possible age-dependent differences early after vaccination. These patches contained TLR1/2a (Pam3Cys), TLR7/8a (R848) or TLR9a (CpG ODN) combined with inactivated porcine reproductive and respiratory syndrome virus (PRRSV) or with an oil-in-water stable emulsion. Vaccinated skin and draining lymph nodes were analysed for immune response genes using microfluidic high-throughput qPCR to evaluate the early immune response and activation of APCs. Skin pathology and immunohistochemistry were used to evaluate the local immune responses and APCs in the vaccinated skin, respectively.In both neonatal and adult pigs, skin vaccination with TLR7/8a induced the most prominent early inflammatory and immune cell responses, particularly in the skin. Skin histopathology and immunohistochemistry of APCs showed comparable results for neonatal and adult pigs after vaccination with the different TLRa vaccines. However, in vaccinated neonatal pigs in the skin and draining lymph node more immune response related genes were upregulated compared to adult pigs. We showed that both neonatal and adult skin could be stimulated to develop an immune response, particularly after TLR7/8a vaccination, with age-dependent differences in regulation of immune genes. Therefore, age-dependent differences in local early immune responses should be considered when developing skin vaccines.
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- 2021
48. Isotype-specific Antibody Responses to Mycobacterium avium paratuberculosis Antigens Are Associated With the Use of Biologic Therapy in Inflammatory Bowel Disease
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Behrooz Z. Alizadeh, Annemieke Dinkla, Coretta Van Leer-Buter, Lars Ravesloot, Tjasso Blokzijl, Harry van Goor, Gerard Dijkstra, Ad P. Koets, Marijn C. Visschedijk, Hendrik M. van Dullemen, Eleonora A. M. Festen, Kimberley W. J. van der Sloot, Rinse K. Weersma, Michiel Voskuil, Center for Liver, Digestive and Metabolic Diseases (CLDM), Life Course Epidemiology (LCE), Real World Studies in PharmacoEpidemiology, -Genetics, -Economics and -Therapy (PEGET), Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI), Groningen Institute for Organ Transplantation (GIOT), Groningen Kidney Center (GKC), and Translational Immunology Groningen (TRIGR)
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0301 basic medicine ,Disease ,Inflammatory bowel disease ,03 medical and health sciences ,0302 clinical medicine ,disease progression ,Antigen ,medicine ,Genetic predisposition ,genetics ,Host Pathogen Interaction & Diagnostics ,Crohn's disease ,biology ,business.industry ,Bacteriologie ,Gastroenterology ,Bacteriology ,nflammatory bowel disease ,General Medicine ,Bacteriology, Host Pathogen Interaction & Diagnostics ,medicine.disease ,biology.organism_classification ,Mycobacterium avium subspecies paratuberculosis ,Ulcerative colitis ,Host Pathogen Interactie & Diagnostiek ,030104 developmental biology ,Immunoglobulin M ,Mycobacterium avium paratuberculosis ,Immunology ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,biology.protein ,isotype-specific testing ,030211 gastroenterology & hepatology ,business - Abstract
Background The role of Mycobacterium avium paratuberculosis [MAP] in inflammatory bowel disease [IBD], especially Crohn’s disease [CD] is controversial due conflicting results and lack of reproducibility and standardised tests. The current study focuses on the role of MAP in disease progression and genetic susceptibility, as MAP is likely one of many factors involved in the complex pathogenesis of IBD, potentially affecting a subgroup depending on genetic susceptibility. Methods Serum from 812 patients was evaluated with seven immunoglobulin [Ig] isotype-specific serology tests assessing humoral response to three different MAP antigens. For each of these in total 21 tests, the intra-assay and inter-assay coefficients were used to evaluate test accuracy. Reliable assays were subsequently analysed in relation to disease characteristics and need for biologic therapy/surgery. Genome-wide genotyping was available for all participants. Genetic determinants of humoral response to MAP antigens were evaluated using genome-wide association analysis and polygenic risk scores [PRS]. Results High IgA or IgM response to MAP2609 was associated with increased use of biologic therapy in CD and ulcerative colitis [UC] [odds ratios 2.69; 95% confidence interval 1.44–5.01; and 2.60, 1.46–4.64, respectively]. No associations were seen for risk of surgery [p-values > 0.29]. We could not identify genetic determinants nor polygenic risk scores for MAP response with genome-wide significance. Conclusions Extensive assays for serological response to MAP were evaluated using stringent criteria for reliability. Increased IgA and IgM response to MAP antigens was seen in patients exposed to biologic therapy, but no genetic determinants underlying this humoral response were found.
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- 2021
49. A single vaccination with four-segmented rift valley fever virus prevents vertical transmission of the wild-type virus in pregnant ewes
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Paul J. Wichgers Schreur, Lucien van Keulen, Judith Oymans, Yves Dehon, Zoltan Penzes, Jet Kant, Anna Kollar, Sandra G. P. van de Water, Jeroen Kortekaas, and Pál Soós
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0301 basic medicine ,030231 tropical medicine ,Immunology ,Virulence ,Diseases ,Biology ,Abortion ,Microbiology ,Article ,03 medical and health sciences ,Medical research ,0302 clinical medicine ,medicine ,Life Science ,Pharmacology (medical) ,Rift Valley fever ,reproductive and urinary physiology ,RC254-282 ,Host Pathogen Interaction & Diagnostics ,Pharmacology ,Pregnancy ,Transmission (medicine) ,Bacteriologie ,Outbreak ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,RC581-607 ,PE&RC ,medicine.disease ,Virology ,Host Pathogen Interactie & Diagnostiek ,Virology & Molecular Biology ,Virologie & Moleculaire Biologie ,Vaccination ,030104 developmental biology ,Infectious Diseases ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,Flock ,Immunologic diseases. Allergy ,Biotechnology - Abstract
Rift Valley fever virus (RVFV) is a mosquito-transmitted bunyavirus that causes severe outbreaks among wild and domesticated ruminants, of which sheep are the most susceptible. Outbreaks are characterised by high mortality rates among new-born lambs and abortion storms, in which all pregnant ewes in a flock may abort their foetuses. In endemic areas, Rift Valley fever (RVF) can be controlled by vaccination with either inactivated or live-attenuated vaccines. Inactivated vaccines are safe for animals during all physiological stages, including pregnancy. However, optimal efficacy of these vaccines depends on multiple vaccinations and yearly re-vaccination. Live-attenuated vaccines are generally highly efficacious after a single vaccination, but currently available live-attenuated vaccines may transmit to the ovine foetus, resulting in stillbirths, congenital malformations or abortion. We have previously reported the development of a novel live-attenuated RVFV vaccine, named RVFV-4s. This vaccine virus was created by splitting the M genome segment and deleting the major virulence determinant NSs, and was shown to be safe even for the most susceptible species, including pregnant ewes. The demonstrated efficacy and safety profile suggests that RVFV-4s holds promise for veterinary and human application. The RVFV-4s vaccine for veterinary application, here referred to as vRVFV-4s, was shown to provide complete protection after a single vaccination of lambs, goats and cattle. In this work, we evaluated the efficacy of the vRVFV-4s vaccine in pregnant ewes. Anticipating on the extremely high susceptibility of pregnant ewes for RVFV, both a single vaccination and double vaccination were evaluated in two independent experiments. The combined results suggest that a single vaccination with vRVFV-4s is sufficient to protect pregnant ewes and to prevent transmission to the ovine foetus.
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- 2021
50. Hoe kan de Nederlandse aquacultuur de transitie naar duurzaam voer inzetten?
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Host Pathogen Interaction & Diagnostics ,Aquaculture and Fisheries ,Aquacultuur en Visserij ,Bacteriologie ,WIAS ,Bacteriology ,Host Pathogen Interactie & Diagnostiek - Abstract
Bij elke levenscyclusanalyse komt het voer naar voren als de meestmilieubelastende component van de aquacultuursector. Een van de oorzakendaarvan is het gebruik van eiwitbronnen. Plantaardige ingrediënten vragenland, water en energie, en de vangst van vis voor vismeel en visolie is energieintensief en draagt bij aan de verstoring van de biodiversiteit in zee. In eenNWO-KIEM project vanuit het lectoraat INVIS inventariseerden onderzoekers,samen met studenten van de HAS Hogeschool, de kansen en uitdagingenvan het gebruik van meel van insecten die groeien op afval. De kennis die isopgedaan tijdens het eenjarige project is gedeeld met geïnteresseerden tijdenseen webinar.
- Published
- 2021
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