93 results on '"BRAT"'
Search Results
2. mRNA decay pre-complex assembly drives timely cell-state transitions during differentiation.
- Author
-
Komori H, Rastogi G, Bugay JP, Luo H, Lin S, Angers S, Smibert CA, Lipshitz HD, and Lee CY
- Abstract
Complexes that control mRNA stability and translation promote timely cell-state transitions during differentiation by ensuring appropriate expression patterns of key developmental regulators. The Drosophila RNA-binding protein brain tumor (Brat) promotes the degradation of target transcripts during the maternal-to-zygotic transition in syncytial embryos and uncommitted intermediate neural progenitors (immature INPs). We identify ubiquitin-specific protease 5 (Usp5) as a candidate Brat interactor essential for the degradation of Brat target mRNAs. Usp5 promotes the formation of the Brat-deadenylase pre-complex in mitotic neural stem cells (neuroblasts) by facilitating Brat interactions with the scaffolding components of deadenylase complexes. The adaptor protein Miranda binds the RNA-binding domain of Brat, limiting its ability to bind target mRNAs in mitotic neuroblasts. Cortical displacement of Miranda activates Brat-deadenylase complex activity in immature INPs. We propose that the assembly of an enzymatically inactive and RNA-binding-deficient pre-complex poises mRNA degradation machineries for rapid activation, driving timely developmental transitions., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
3. O „podkarpackich" wierszach do braci (w stronę antropologii listu poetyckiego; rekonesans).
- Author
-
Kuczera-Chachulska, Bernadetta
- Abstract
The sketch deals w ith the problems of the poetic letter. During the exemplification of the issue, poems by Julian Przyboś, Cyprian Norwid and Ignacy Krasicki are used. It turns out that important issues can be seen from the perspective of selected, but also deep anthropological problems, arising from the interpretative process. The tools for understanding them are provided by thinkers of post-Husserlian phenomenology, in this case Dietrich von Hildebrand. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
4. Charli XCX Embraces Kamala Harris 'Brat' Memes: 'Happy To Help To Prevent Democracy From Failing'.
- Author
-
Murray, Conor
- Subjects
COCONUT palm ,POLITICAL campaigns ,MEMES ,DEMOCRACY ,SINGERS - Abstract
The British pop singer said she never meant to be a political artist despite her album "Brat" becoming a symbol of Vice President Kamala Harris' presidential campaign. [ABSTRACT FROM AUTHOR]
- Published
- 2024
5. All The Ways The DNC Co-Opted Memes—From 'Brat' To Kamala Harris' 'Coconut Tree' Quote.
- Author
-
Murray, Conor
- Subjects
COCONUT palm ,AESTHETICS ,SUMMER - Abstract
Charli XCX's viral "Brat summer" trend has taken center stage at the Democratic National Convention after Vice President Kamala Harris' campaign embraced the album's neon-green aesthetic. [ABSTRACT FROM AUTHOR]
- Published
- 2024
6. What To Know About 'Demure' — TikTok's Latest Satirical Buzzword.
- Author
-
Murray, Conor
- Subjects
JARGON (Terminology) ,SUMMER - Abstract
TikTok users are teaching others how to be "very demure" and "very mindful" in various situations in a satirical new TikTok trend that critiques behaviors deemed inelegant. [ABSTRACT FROM AUTHOR]
- Published
- 2024
7. The tumour suppressor brain tumour (Brat) regulates linker histone dBigH1 expression in the Drosophila female germline and the early embryo
- Author
-
Paula Climent-Cantó, Albert Carbonell, Srividya Tamirisa, Laszlo Henn, Salvador Pérez-Montero, Imre M. Boros, and Fernando Azorín
- Subjects
linker histone H1 ,dBigH1 ,Brat ,oogenesis ,embryogenesis ,Drosophila ,Biology (General) ,QH301-705.5 - Abstract
Linker histones H1 are essential chromatin components that exist as multiple developmentally regulated variants. In metazoans, specific H1s are expressed during germline development in a tightly regulated manner. However, the mechanisms governing their stage-dependent expression are poorly understood. Here, we address this question in Drosophila, which encodes for a single germline-specific dBigH1 linker histone. We show that during female germline lineage differentiation, dBigH1 is expressed in germ stem cells and cystoblasts, becomes silenced during transit-amplifying (TA) cystocytes divisions to resume expression after proliferation stops and differentiation starts, when it progressively accumulates in the oocyte. We find that dBigH1 silencing during TA divisions is post-transcriptional and depends on the tumour suppressor Brain tumour (Brat), an essential RNA-binding protein that regulates mRNA translation and stability. Like other oocyte-specific variants, dBigH1 is maternally expressed during early embryogenesis until it is replaced by somatic dH1 at the maternal-to-zygotic transition (MZT). Brat also mediates dBigH1 silencing at MZT. Finally, we discuss the situation in testes, where Brat is not expressed, but dBigH1 is translationally silenced too.
- Published
- 2021
- Full Text
- View/download PDF
8. Negative regulation of diminutive cancer regulator through differentiation and microRNA pathway components in Drosophila cells.
- Author
-
MALIK, Sumira
- Subjects
- *
CELL anatomy , *MICRORNA , *MYC oncogenes , *ARGONAUTE proteins , *CELL differentiation , *CHO cell - Abstract
Drosophila model is intensively studied for the development of cancer. The diminutive (dMyc), a homolog of the human MYC gene, is responsible for cell-apoptosis and its upregulation is responsible for determining the fate of cancerous growth in humans and Drosophila model. This work implores the requirement of dMyc and its expression as one of the major regulator of cancer with other proteins and repression of dMyc mRNA in Drosophila S2 cells. Here we report protein complex of Argonaute 1 (AGO1), Bag of marbles (Bam), and Brain tumor (Brat) proteins and not the individual factor of this complex repression of dMyc mRNA in Drosophila Schneider 2 cells and promote differentiation in cystoblast of Drosophila ovary. These results exhibit the significant role of this complex, including master differentiation factor Bam with other various differentiation factor Brat and microRNA pathway component AGO1, which may negatively regulate dMyc mRNA and so the dMyc protein. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
9. Could Billie Eilish Join Charli XCX For 'Brat Summer'? Fans Think She'll Be Featured On 'Guess' Remix.
- Author
-
Murray, Conor
- Subjects
REMIXES ,SUMMER ,SINGERS ,SONGS ,ARTISTS - Abstract
The British pop singer teased an upcoming remix of her song "Guess," though she concealed the identity of the featured artist. [ABSTRACT FROM AUTHOR]
- Published
- 2024
10. Here's How Kamala Harris Is Embracing Memes Like Charli XCX's 'Brat Summer' And 'Project Coconut Tree'.
- Author
-
Murray, Conor
- Subjects
COCONUT palm ,MEMES ,ALBUM cover art ,POLITICAL campaigns ,SUMMER - Abstract
@KamalaHQ, an X account for Vice President Kamala Harris's presidential campaign, updated its cover photo on X to imitate Charli XCX's neon-green "Brat" album cover. [ABSTRACT FROM AUTHOR]
- Published
- 2024
11. Taylor Swift Drops New 'Tortured Poets Department' Versions—As Fans Accuse Singer Of Blocking Charli XCX From No. 1.
- Author
-
Murray, Conor
- Subjects
POETS ,BILLBOARDS ,SINGERS ,SOCIAL media - Abstract
Fans have criticized Swift on social media for appearing to block other artists from reaching No. 1 on the charts by releasing many new versions of "The Tortured Poets Department" with additional acoustic or live bonus tracks. [ABSTRACT FROM AUTHOR]
- Published
- 2024
12. Assessing restoration potential for beaver (Castor canadensis) in the semiarid foothills of the Southern Rockies, USA.
- Author
-
Kornse, Zachary and Wohl, Ellen
- Subjects
RIPARIAN plants ,BEAVERS ,WILDLIFE reintroduction ,STREAM restoration ,FOOTHILLS ,STREAMFLOW ,VEGETATION mapping - Abstract
We used the Beaver Restoration Assessment Tool (BRAT) developed at Utah State University to develop spatially explicit estimates of maximum beaver‐carrying capacity in a 160 km2 watershed in the foothills of the Southern Rockies. The watershed does not currently have beaver but has extensive evidence of past beaver occupation. BRAT uses input data on stream flow, topography, and vegetation. We compared BRAT results using three different types of vegetation inputs: the default LANDFIRE data at 30‐m spatial resolution and pixel‐based and object‐based image analysis (OBIA) with 1‐m resolution National Agriculture Imagery Program imagery. OBIA produced the most accurate results relative to ground‐based vegetation mapping. Changes in vegetation input data resulted in substantial changes in BRAT estimates of beaver‐carrying capacity. Using historic LANDFIRE vegetation data and field evidence of past beaver activity, contemporary beaver‐carrying capacity is much lower than historical capacity throughout the watershed. These changes are especially pronounced in low‐order stream segments, suggesting that beaver reintroduction in this watershed could be facilitated by measures to restore riparian vegetation along low‐order streams. This case study demonstrates the value of using BRAT as a tool prior to beaver reintroduction and stream restoration. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
13. Aneurysm Neck Remnants: A Strong Case Can Be Made for Re-treatment
- Author
-
Vance, Awais, Welch, Babu G., and Veznedaroglu, Erol, editor
- Published
- 2016
- Full Text
- View/download PDF
14. Kamala Harris Has a Brat Summer.
- Author
-
Kessler, Andy
- Subjects
- *
SUMMER , *DIME - Abstract
The article discusses the influence of British singer Charli XCX on Vice President Kamala Harris's campaign. Charli XCX's album "Brat" and her association with the Dimes Square subculture have attracted the attention of young voters. The article explores the intersection of music, culture, and politics, highlighting the historical influence of music on political movements. It also delves into the characteristics of Dimes Square culture, which is associated with both the "new right" and the "dirtbag left." The author questions the strategic decision of the campaign to align with Charli XCX's music and lyrics, which may not align with Harris's political image. [Extracted from the article]
- Published
- 2024
15. Motyw kazirodztwa w polskim folklorze tradycyjnym
- Author
-
Adrian Mianecki
- Subjects
kazirodztwo ,incest ,folklor ,obrzęd ,wesele ,brat ,Ethnology. Social and cultural anthropology ,GN301-674 ,Language and Literature ,Literature (General) ,PN1-6790 - Abstract
Artykuł przynosi analizę tradycyjnych przekazów ludowych w perspektywie uobecnianego w nich motywu kazirodztwa między siostrą i bratem. Autor zwraca uwagę, że jakkolwiek tytułowy motyw sporadycznie jest przywoływany wprost, to jednak jego zawoalowane formy wydają się występować niemal powszechnie zwłaszcza w prozie ludowej, a przy tym odwołania do symboliki incestualnej można odnaleźć także w konkretnych sytuacjach obrzędowych. Zdaniem autora popularność tego motywu jest pogłosem dawnych mitologicznych wyobrażeń, dla których kanwą był związek małżeński między rodzeństwem.
- Published
- 2020
- Full Text
- View/download PDF
16. Crystal structure of the coiled‐coil domain of Drosophila TRIM protein Brat.
- Author
-
Liu, Chunhua, Shan, Zelin, Diao, Jianqiao, Wen, Wenyu, and Wang, Wenning
- Abstract
Drosophila brain tumor (Brat) is a translational repressor belonging to the tripartite motif (TRIM) protein superfamily. During the asymmetric division of Drosophila neuroblasts, Brat localizes at the basal cortex via direct interaction with the scaffolding protein Miranda (Mira), and segregates into the basal ganglion mother cells after cell division. It was previously reported that both the coiled‐coil (CC) and NHL domains of Brat are required for the interaction with Mira, but the underlying structural basis is elusive. Here, we determine the crystal structure of Brat‐CC domain (aa 376‐511) at 2.5 Å, showing that Brat‐CC forms an elongated antiparallel dimer through an unconventional CC structure. The dimeric assembly in Brat‐CC structure is similar to its counterparts in other TRIM proteins, but Brat‐CC also exhibits some distinct structural features. We also demonstrate that the CC domain could not bind Mira by its own, neither does the isolated NHL domain of Brat. Rather, Brat binds to Mira through the CC‐NHL domain tandem, indicating that the function of the CC domain is to assemble Brat‐NHL in dimeric form, which is necessary for Mira binding. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
17. Cherub versus brat
- Author
-
Jennifer A Malin and Claude Desplan
- Subjects
tumorigenesis ,lncRNA ,neuroblasts ,neural stem cells ,cherub ,brat ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
A long non-coding RNA molecule called cherub is a driver of tumor development.
- Published
- 2018
- Full Text
- View/download PDF
18. Online Service for Polish Dependency Parsing and Results Visualisation
- Author
-
Wróblewska, Alina, Sikora, Piotr, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Doug, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Kłopotek, Mieczysław A., editor, Koronacki, Jacek, editor, Marciniak, Małgorzata, editor, Mykowiecka, Agnieszka, editor, and Wierzchoń, Sławomir T., editor
- Published
- 2013
- Full Text
- View/download PDF
19. STUDI PASANG SURUT DI PERAIRAN INDONESIA DENGAN MENGGUNAKAN DATA SATELIT ALTIMETRI JASON-1
- Author
-
Lukman Raharjanto and Bangun Muljo Sukojo
- Subjects
sea level anomaly ,jason-1 ,BRAT ,trend pasang surut ,Geodesy ,QB275-343 - Abstract
Hampir 70% wilayah Indonesia adalah wilayah perairan. Indonesia menyimpan potensi kekayaan sumber daya kelautan yang masih belum dieksplorasi dan dieksploitasi secara optimal, bahkan sebagian belum diketahui potensi yang sebenarnya. Hal ini mendasari akan pentingnya informasi spasial di wilayah perairan Indonesia. Fenomena naik atau turunnya permukaan laut atau SLA (Sea Level Anomaly) merupakan hal yang sering mengemuka dengan perubahan gerak relatif dari materi suatu planet, bintang, dan benda-benda angkasa lainnya yang diakibatkan aksi tarik menarik atau yang sering disebut dengan pasang surut. Saat ini telah dikembangkan sistem satelit altimetri Jason-1 yang mempunyai obyek penelitian mengamati pasang surut. Pengolahan data biner dari satelit altimetri Jason-1 dilakukan dengan menggunakan beberapa tahapan, yaitu : konversi data, pembentukan grid, dan pemodelan serta analisa trend pasang surut. Pemantauan SLA beserta trend dan analisa pasang surut dilakukan setiap cycle dalam kurun waktu empat tahun (2008-2011).Hasil pemantauan SLA (Sea Level Anomaly) dengan menggunakan data satelit altimetri Jason-1 mulai dari tahun 2008 sampai 2011 diperoleh terjadinya trend pasang tertinggi dan surut terendah di wilayah perairan Indonesia. Hasil penelitian menunjukkan bahwa nilai pasang tertinggi pada tahun 2008 terjadi pada cycle 236 yaitu sebesar 1,9982 m di Laut Arafuru dan nilai surut terendah terjadi pada cycle 236 yaitu sebesar -3,6954 m di Laut Arafuru. Nilai pasang tertinggi pada tahun 2009 terjadi pada cycle 290 sebesar 1,9325 m di Laut Arafuru dan nilai surut terendah terjadi pada cycle 258 sebesar -3,309 m di Laut Arafuru. Nilai pasang tertinggi pada tahun 2010 terjadi pada cycle 308 sebesar 2,1511 m di Laut Arafuru dan nilai surut terendah terjadi pada cycle 297 sebesar -2,8303 m. Nilai pasang tertinggi pada tahun 2011 terjadi pada cycle 345 sebesar 1,8402 m di Laut Arafuru dan nilai surut terendah terjadi pada cycle 348 sebesar -3,57 m. Dalam waktu empat tahun, wilayah perairan Indonesia yang mengalami nilai pasang tertinggi dan surut terendah yaitu di Laut Arafuru.
- Published
- 2015
- Full Text
- View/download PDF
20. Drosophila as a Model for Assessing the Function of RNA-Binding Proteins during Neurogenesis and Neurological Disease
- Author
-
Eugenia C. Olesnicky and Ethan G. Wright
- Subjects
Drosophila ,RNA-binding proteins ,neurons ,neurodegeneration ,amyotrophic lateral sclerosis ,Fmr1 ,spinal muscular atrophy ,TDP-43 ,FUS ,C9orf72 ,shep ,brat ,Biology (General) ,QH301-705.5 - Abstract
An outstanding question in developmental neurobiology is how RNA processing events contribute to the regulation of neurogenesis. RNA processing events are increasingly recognized as playing fundamental roles in regulating multiple developmental events during neurogenesis, from the asymmetric divisions of neural stem cells, to the generation of complex and diverse neurite morphologies. Indeed, both asymmetric cell division and neurite morphogenesis are often achieved by mechanisms that generate asymmetric protein distributions, including post-transcriptional gene regulatory mechanisms such as the transport of translationally silent messenger RNAs (mRNAs) and local translation of mRNAs within neurites. Additionally, defects in RNA splicing have emerged as a common theme in many neurodegenerative disorders, highlighting the importance of RNA processing in maintaining neuronal circuitry. RNA-binding proteins (RBPs) play an integral role in splicing and post-transcriptional gene regulation, and mutations in RBPs have been linked with multiple neurological disorders including autism, dementia, amyotrophic lateral sclerosis (ALS), spinal muscular atrophy (SMA), Fragile X syndrome (FXS), and X-linked intellectual disability disorder. Despite their widespread nature and roles in neurological disease, the molecular mechanisms and networks of regulated target RNAs have been defined for only a small number of specific RBPs. This review aims to highlight recent studies in Drosophila that have advanced our knowledge of how RBP dysfunction contributes to neurological disease.
- Published
- 2018
- Full Text
- View/download PDF
21. Teološka promišljanja i konkretna ostvarenja kršćanskoga bratstva. Bratstvo vjeroučitelja u službi kršćanskoga i univerzalnoga bratstva
- Author
-
Punda, Edvard and Periš, Josip
- Subjects
brat ,bratstvo ,vjeronauk ,vjeroučitelji ,bratstvo vjeroučitelja - Abstract
U članku se promišlja o vrlo važnoj, ali i zapostavljenoj temi kršćanstva i katoličke teologije, o temi bratstva. Ako neke teološke teme i mogu ostati samo u području spekulativnoga, misaonoga, tema bratstva u svojoj biti traži konkretna ostvarenja i pokazatelje. U članku se, stoga, najprije predstavlja ponovno otkrivanje aktualnosti teme i pojma bratstva u Crkvi i teologiji. Navodi se nekoliko misli općenito o pojmu „brat” i „bratstvo” i predstavlja kršćansko poimanje bratstva. Pokazat će se kako ono, makar u nekim vidovima, može biti i model življenja i razumijevanja bratstva uopće. Potom se, na tragu tih promišljanja, tumači poslanje vjeroučitelja unutar i polazeći od kategorije bratstva. Pokazuje se kako školski vjeronauk može poučavati o bratstvu, kao i stvarati bratstvo. Na kraju se sasvim konkretno navode neka ostvarenja i inicijative po kojima se ostvaruje bratstvo vjeroučitelja u Splitskomakarskoj nadbiskupiji.
- Published
- 2022
22. The tumour suppressor brain tumour (Brat) regulates linker histone dBigH1 expression in the Drosophila female germline and the early embryo
- Author
-
Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat de Catalunya, European Commission, National Research, Development and Innovation Office (Hungary), Ministry for National Economy (Hungary), Climent-Cantó, Paula, Carbonell, Albert, Tamirisa, Srividya, Henn, Laszlo, Pérez-Montero, Salvador, Boros, Imre M., Azorin, Fernando, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat de Catalunya, European Commission, National Research, Development and Innovation Office (Hungary), Ministry for National Economy (Hungary), Climent-Cantó, Paula, Carbonell, Albert, Tamirisa, Srividya, Henn, Laszlo, Pérez-Montero, Salvador, Boros, Imre M., and Azorin, Fernando
- Abstract
Linker histones H1 are essential chromatin components that exist as multiple developmentally regulated variants. In metazoans, specific H1s are expressed during germline development in a tightly regulated manner. However, the mechanisms governing their stage-dependent expression are poorly understood. Here, we address this question in Drosophila, which encodes for a single germline-specific dBigH1 linker histone. We show that during female germline lineage differentiation, dBigH1 is expressed in germ stem cells and cystoblasts, becomes silenced during transit-amplifying (TA) cystocytes divisions to resume expression after proliferation stops and differentiation starts, when it progressively accumulates in the oocyte. We find that dBigH1 silencing during TA divisions is post-transcriptional and depends on the tumour suppressor Brain tumour (Brat), an essential RNA-binding protein that regulates mRNA translation and stability. Like other oocyte-specific variants, dBigH1 is maternally expressed during early embryogenesis until it is replaced by somatic dH1 at the maternal-to-zygotic transition (MZT). Brat also mediates dBigH1 silencing at MZT. Finally, we discuss the situation in testes, where Brat is not expressed, but dBigH1 is translationally silenced too.
- Published
- 2021
23. A case study using the PrOACT-URL and BRAT frameworks for structured benefit risk assessment.
- Author
-
Nixon, Richard, Dierig, Christoph, Mt‐Isa, Shahrul, Stöckert, Isabelle, Tong, Thaison, Kuhls, Silvia, Hodgson, Gemma, Pears, John, Waddingham, Ed, Hockley, Kimberley, and Thomson, Andrew
- Abstract
While benefit-risk assessment is a key component of the drug development and maintenance process, it is often described in a narrative. In contrast, structured benefit-risk assessment builds on established ideas from decision analysis and comprises a qualitative framework and quantitative methodology. We compare two such frameworks, applying multi-criteria decision-analysis (MCDA) within the PrOACT-URL framework and weighted net clinical benefit (wNCB), within the BRAT framework. These are applied to a case study of natalizumab for the treatment of relapsing remitting multiple sclerosis. We focus on the practical considerations of applying these methods and give recommendations for visual presentation of results. In the case study, we found structured benefit-risk analysis to be a useful tool for structuring, quantifying, and communicating the relative benefit and safety profiles of drugs in a transparent, rational and consistent way. The two frameworks were similar. MCDA is a generic and flexible methodology that can be used to perform a structured benefit-risk in any common context. wNCB is a special case of MCDA and is shown to be equivalent to an extension of the number needed to treat (NNT) principle. It is simpler to apply and understand than MCDA and can be applied when all outcomes are measured on a binary scale. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
24. TRIM-NHL proteins in development and disease.
- Author
-
Tocchini, Cristina and Ciosk, Rafal
- Subjects
- *
TRIM proteins , *CELL differentiation , *LAURENCE-Moon-Biedl syndrome , *CELL growth , *CELL proliferation , *PROGENITOR cells - Abstract
TRIM-NHL proteins are key regulators of developmental transitions, for example promoting differentiation, while inhibiting cell growth and proliferation, in stem and progenitor cells. Abnormalities in these proteins have been also associated with human diseases, particularly affecting muscular and neuronal functions, making them potential targets for therapeutic intervention. The purpose of this review is to provide a systematic and comprehensive summary on the most studied TRIM-NHL proteins, highlighting examples where connections were established between structural features, molecular functions and biological outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
25. ALTERNATIVE MOTION CONTROL FOR EDUCATIONAL BIPED BRAT ROBOTS.
- Author
-
Barabas, Levente and Tatar, Mihai Olimpiu
- Subjects
MOBILE robot control systems ,ARDUINO (Microcontroller) ,EDUCATIONAL technology - Abstract
In this paper an alternative control solution will be proposed for an educational biped BRAT robot by replacing its SSC-32 servomotor controller with an Arduino R3 development board. Also we will be approaching the problem of adapting the existing electronic circuit to the new requirements and proposing a new application by adding an ultrasonic distance sensor in order to increase the versatility of the robot and make it capable to interact with its environment. [ABSTRACT FROM AUTHOR]
- Published
- 2015
26. Control of Drosophila Type I and Type II central brain neuroblast proliferation by bantam microRNA.
- Author
-
Ruifen Weng and Cohen, Stephen M.
- Subjects
- *
STEM cells , *MICRORNA , *HOMEOSTASIS , *NEUROBLASTOMA , *DROSOPHILA , *PROGENITOR cells - Abstract
Post-transcriptional regulation of stem cell self-renewal by microRNAs is emerging as an important mechanism controlling tissue homeostasis. Here, we provide evidence that bantam microRNA controls neuroblast number and proliferation in the Drosophila central brain. Bantam also supports proliferation of transit-amplifying intermediate neural progenitor cells in type II neuroblast lineages. The stem cell factors brat and prospero are identified as bantam targets acting on different aspects of these processes. Thus, bantam appears to act in multiple regulatory steps in the maintenance and proliferation of neuroblasts and their progeny to regulate growth of the central brain. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
27. Coordinate post-transcriptional repression of Dpp-dependent transcription factors attenuates signal range during development.
- Author
-
Newton, Fay G., Harris, Robin E., Sutcliffe, Catherine, and Ashe, Hilary L.
- Subjects
- *
CELLULAR signal transduction , *TRANSCRIPTION factors , *GERM cells , *TISSUE culture , *CELL differentiation , *BRAIN tumor treatment - Abstract
Precise control of the range of signalling molecule action is crucial for correct cell fate patterning during development. For example, Drosophila ovarian germline stem cells (GSCs) are maintained by exquisitely short-rangeBMP signalling fromthe niche. In the absence of BMP signalling, one GSC daughter differentiates into a cystoblast (CB) and this fate is stabilised by Brain tumour (Brat) and Pumilio (Pum)- mediated post-transcriptional repression of mRNAs, including that encoding the Dpp transducer, Mad. However, the identity of other repressed mRNAs and the mechanism of post-transcriptional repression are currently unknown. Here, we identify the Medea and schnurri mRNAs, which encode transcriptional regulators required for activation and/or repression of Dpp target genes, as additional Pum- Brat targets, suggesting that tripartite repression of the transducers is deployed to desensitise the CB to Dpp. In addition, we show that repression by Pum-Brat requires recruitment of the CCR4 and Pop2 deadenylases, with knockdown of deadenylases in vivo giving rise to ectopic GSCs. Consistent with this, Pum-Brat repression leads to poly(A) tail shortening and mRNA degradation in tissue culture cells, and we detect a reduced number of Mad and shn transcripts in the CB relative to the GSC based on single molecule mRNA quantitation. Finally, we show generality of the mechanism by demonstrating that Brat alsoattenuates pMad andDpp signalling range inthe earlyembryo. Together our data serve as a platform for understanding how posttranscriptional repression restricts interpretation of BMPs and other cell signals in order to allow robust cell fate patterning during development. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
28. The tumour suppressor brain tumour (Brat) regulates linker histone dBigH1 expression in the Drosophila female germline and the early embryo
- Author
-
Imre Boros, Salvador Pérez-Montero, Fernando Azorín, Albert Carbonell, Srividya Tamirisa, Laszlo Henn, Paula Climent-Cantó, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat de Catalunya, European Commission, National Research, Development and Innovation Office (Hungary), and Ministry for National Economy (Hungary)
- Subjects
Embryo, Nonmammalian ,Linker histone H1 ,QH301-705.5 ,Somatic cell ,Immunology ,General Biochemistry, Genetics and Molecular Biology ,Germline ,Histones ,03 medical and health sciences ,0302 clinical medicine ,Oogenesis ,medicine ,Animals ,Drosophila Proteins ,Gene silencing ,Biology (General) ,Brat ,Research Articles ,030304 developmental biology ,0303 health sciences ,dBigH1 ,biology ,oogenesis ,Research ,General Neuroscience ,linker histone H1 ,Gene Expression Regulation, Developmental ,Embryo ,Oocyte ,Chromatin ,Cell biology ,DNA-Binding Proteins ,Drosophila melanogaster ,Histone ,medicine.anatomical_structure ,Embryogenesis ,biology.protein ,Female ,embryogenesis ,Drosophila ,Stem cell ,030217 neurology & neurosurgery - Abstract
© 2021 The Authors., Linker histones H1 are essential chromatin components that exist as multiple developmentally regulated variants. In metazoans, specific H1s are expressed during germline development in a tightly regulated manner. However, the mechanisms governing their stage-dependent expression are poorly understood. Here, we address this question in Drosophila, which encodes for a single germline-specific dBigH1 linker histone. We show that during female germline lineage differentiation, dBigH1 is expressed in germ stem cells and cystoblasts, becomes silenced during transit-amplifying (TA) cystocytes divisions to resume expression after proliferation stops and differentiation starts, when it progressively accumulates in the oocyte. We find that dBigH1 silencing during TA divisions is post-transcriptional and depends on the tumour suppressor Brain tumour (Brat), an essential RNA-binding protein that regulates mRNA translation and stability. Like other oocyte-specific variants, dBigH1 is maternally expressed during early embryogenesis until it is replaced by somatic dH1 at the maternal-to-zygotic transition (MZT). Brat also mediates dBigH1 silencing at MZT. Finally, we discuss the situation in testes, where Brat is not expressed, but dBigH1 is translationally silenced too., This work was supported by grants from MICINN (BFU2015-65082-P and PGC2018-094538-B-I00), the Generalitat de Catalunya (SGR2009-1023, SGR2014-204) and the European Community FEDER program to F.A., and from National Research, Development and Innovation Office (OTKA-116372) and Ministry for National Economy of Hungary (GINOP-2.3.2-15-2016-00032) to L.H./I.M.B.
- Published
- 2021
29. Major Grom: Plague Doctor. A Superhero of Our Time
- Author
-
Bazzocchi, Filippo
- Subjects
major grom ,supereroe russo ,Russian comics ,čumnoj doktor ,Russian superhero ,Plague Doctor ,brat ,fumetto russo ,Major Grom ,Brother - Abstract
Il presente lavoro prende in esame il fumetto Major Grom: Čumnoj Doktor, pubblicato a partire dal 2012 dalla casa editrice russa Bubble Comics. La prima parte analizza il protagonista Igor’ Grom, supereroe di San Pietroburgo, e approfondisce il rapporto dei russi con questa tipologia di personaggi, per poi studiare i tratti e i modelli culturali che rendono Grom il primo vero supereroe russo dei fumetti. La seconda parte analizza l’antagonista Sergej Razumovskij, con un approfondimento sulla sua complessa personalità e sui delicati temi della contemporaneità russa che emergono di conseguenza. Fine ultimo è quindi dimostrare che il genere del fumetto è in grado di raccontare in modo nuovo la cultura russa anche tramite figure in passato disprezzate come i supereroi e i loro nemici. This work examines the comic book series Major Grom: Plague Doctor, first published in 2012 by the Russian publishing house Bubble Comics. The first part analyzes protagonist Igor Grom, a superhero from St. Petersburg, by examining Russians’ attitude to this type of characters and then studying cultural traits and models that make Grom the first real Russian comics superhero. The second part is an analysis of the antagonist Sergei Razumovsky, with an in-depth study of his complex personality and modern-day Russia’s delicate themes that come up while carrying out such analysis. Therefore, the aim of this article is to prove that comics can be a new medium to showcase Russian culture, even by means of previously disdained characters such as superheroes and their enemies.
- Published
- 2021
30. Structured Approaches to Benefit-Risk Assessment: A Case Study and the Patient Perspective.
- Author
-
Levitan, Bennett, Phillips, Lawrence D., and Walker, Stuart
- Subjects
SEROTONIN agonists ,COMPARATIVE studies ,CONFIDENCE intervals ,DECISION making ,DRUGS ,DRUG side effects ,MIGRAINE ,RISK assessment ,DATA analysis software ,DESCRIPTIVE statistics ,STATISTICS ,THERAPEUTICS - Abstract
The article presents a case study on the utility of structured approaches to benefit-risk assessment of pharmaceutical products. The researchers conducted a simulated single-session benefit-risk decision involving three groups using triptan for acute migraine. It implies that the three groups provided consistent value, clarity, and importance of an approval decision.
- Published
- 2014
- Full Text
- View/download PDF
31. MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.
- Author
-
Shuying Sun, Aaron Noviski, and Xiaoqing Yu
- Subjects
- *
DNA methylation , *BIOINFORMATICS , *CYTOSINE , *EPIGENESIS , *GENE expression , *SULFITES , *METHYLATION - Abstract
Background: DNA methylation is an epigenetic event that adds a methyl-group to the 5' cytosine. This epigenetic modification can significantly affect gene expression in both normal and diseased cells. Hence, it is important to study methylation signals at the single cytosine site level, which is now possible utilizing bisulfite conversion technique (i.e., converting unmethylated Cs to Us and then to Ts after PCR amplification) and next generation sequencing (NGS) technologies. Despite the advances of NGS technologies, certain quality issues remain. Some of the more prevalent quality issues involve low per-base sequencing quality at the 3' end, PCR amplification bias, and bisulfite conversion rates. Therefore, it is important to conduct quality assessment before downstream analysis. To the best of our knowledge, no existing software packages can generally assess the quality of methylation sequencing data generated based on different bisulfite-treated protocols. Results: To conduct the quality assessment of bisulfite methylation sequencing data, we have developed a pipeline named MethyQA. MethyQA combines currently available open-source software packages with our own custom programs written in Perl and R. The pipeline can provide quality assessment results for tens of millions of reads in under an hour. The novelty of our pipeline lies in its examination of bisulfite conversion rates and of the DNA sequence structure of regions that have different conversion rates or coverage. Conclusions: MethyQA is a new software package that provides users with a unique insight into the methylation sequencing data they are researching. It allows the users to determine the quality of their data and better prepares them to address the research questions that lie ahead. Due to the speed and efficiency at which MethyQA operates, it will become an important tool for studies dealing with bisulfite methylation sequencing data. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
32. Variability of Altimetric Range Correction Parameters over Indian Tropical Region using JASON-1 & JASON-2 Radar Altimeters.
- Author
-
Chander, S., Chauhan, Prakash, and Ajai
- Abstract
Region-specific atmospheric range correction maps are generated over the Indian tropical region from Jason-1 & Jason-2 radar altimeters data. Seasonal and spatial variability of wet tropospheric correction (WTC), ionospheric correction (IC), dry tropospheric correction (DTC), and sea state bias (SSB) correction are analyzed over the Bay of Bengal and the Arabian Sea. Two year atmospheric range correction data from JASON-1 (2008) & JASON-2 altimeters (2009) has been analyzed where each Jason cycle is exactly 9.9156 days repeat. The monthly and yearly mean variation of the range correction parameters has been studied over the Indian continent. For precise study, four different regions were selected as the Region of Interest in the North & South of the Arabian Sea and Bay of Bengal. WTC, Significant Wave Height (SWH), Wind Speed (WS) and SSB show the higher values during monsoon months. The yearly mean WTC over Indian Tropical region was 26.22 cm in 2008 and 26.20 cm in 2009. SSB Correction values mainly depend on the SWH and wind speed. The yearly mean SSB correction over Indian Tropical region was 6.87 cm in 2008 and 7.02 cm in 2009. DTC values are less during monsoon season and it shows a high value in the month of January. The yearly mean DTC over Indian Tropical region was 230.42 cm in 2008 and 230.43 cm in 2009.The IC values mainly depend on frequency and total electron content (TEC) in the ionosphere which further depends on the solar activity. The yearly mean IC over Indian Tropical region was higher in 2008 (2.98 cm) in comparison to mean IC in 2009 (2.29 cm). This study is useful to understand the variability of atmospheric correction parameters especially over Indian continent. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
33. Identification of BERP (brain-expressed RING finger protein) as a p53 target gene that modulates seizure susceptibility through interacting with GABAA receptors.
- Author
-
Carol C. Cheung, Caimei Yang, Berger, Thorsten, Zaugg, Kathrin, Reilly, Patrick, Elia, Andrew J., Wakeham, Andrew, You-Ten, Annick, Ning Chang, Lijun Li, Qi Wan, and Tak Wah Mak
- Subjects
- *
GENES , *P53 antioncogene , *GENE expression , *GABA receptors , *LABORATORY mice , *GENETIC transcription - Abstract
p53 is a central player in responses to cellular stresses and a major tumor suppressor. The identification of unique molecules within the p53 signaling network can reveal functions of this important transcription factor. Here, we show that brain-expressed RING finger protein (BERP) is a gene whose expression is up-regulated in a p53-dependent manner in human cells and in mice. We generated BERP-deficient mice by gene targeting and demonstrated that they exhibit increased resistance to pentylenetetrazol-induced seizures. Electrophysiological and biochemical studies of cultured cortical neurons of BERP-deficient mice showed a decrease in the amplitude of GABAA receptor (GABAAR)-mediated miniature inhibitory postsynaptic currents as well as reduced surface protein expression of GABAARS containing the γ2-subunit. However. BERP deficiency did not decrease GABAARY2 mRNA levels, raising the possibility that BERP may act at a posttranscriptional level to regulate the intracellular trafficking of GABAARS.. Our results indicate that BERP is a unique p53-regulated gene and suggest a role for p53 within the central nervous system. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
34. Telovadno društvo "CELJSKI SOKOL" 1890-1940.
- Subjects
- *
GYMNASTICS , *SOCIETIES , *POLITICAL science - Abstract
The Sokol movement (from the Cyech word for falcon) began in the 1860s in Bohemia as a national gymnastic movement and soon after expanded into other Slavic lands of the Habsburg Monarchy as well. "Sokol in Celje" was founded in 1890 and although initially its purpose was that of a gymnastic society, a national purpose was added to its basic mission in 1903. In 1910, Sokolski dom (Sokol hall) was built in Gaberje and Celjska sokolska župa (a union of Sokol societies in Celje) was founded, which in 1914 split into the branch in Celje and the one in Maribor. After the World War 1, the disintegration of the Habsburg monarchy and the foundation of the Yugoslav state, the activities of the Sokol acquired new dimensions. With the establishment of the Sokol of Kingdom of Yugoslavia in 1929, Sokol became centralistic organisation with the goal "to bring up physically healthy, morally strong and nationally conscious citizens of the Kingdom of Yugoslavia" [ABSTRACT FROM AUTHOR]
- Published
- 2008
35. Pumilio Binds para mRNA and Requires Nanos and Brat to Regulate Sodium Current in Drosophila Motoneurons.
- Author
-
Muraro, Nara I., Weston, Andrew J., Gerber, Andre P., Luschnig, Stefan, Moffat, Kevin G., and Baines, Richard A.
- Subjects
- *
MESSENGER RNA , *BRAIN tumors , *SODIUM channels , *MOTOR neurons , *DROSOPHILA , *NEURAL physiology - Abstract
Homeostatic regulation of ionic currents is of paramount importance during periods of synaptic growth or remodeling. Our previous work has identified the translational repressor Pumilio (Pum) as a regulator of sodium current (INa ) and excitability in Drosophila motoneurons. In this current study, we show that Pum is able to bind directly the mRNA encoding the Drosophila voltage-gated sodium channel paralytic ( para). We identify a putative binding site for Pumin the 3' end of the para open reading frame (ORF). Characterization of the mechanism of action of Pum, using whole-cell patch clamp and real-time reverse transcription-PCR, reveals that the full-length protein is required for translational repression of para mRNA. Additionally, the cofactor Nanos is essential for Pum-dependent para repression, whereas the requirement for Brain Tumor (Brat) is cell type specific. Thus, Pum-dependent regulation of INa in motoneurons requires both Nanos and Brat, whereas regulation in other neuronal types seemingly requires only Nanos but not Brat. We also show that Pum is able to reduce the level of nanos mRNA and as such identify a potential negative-feedback mechanism to protect neurons from overactivity of Pum. Finally, we show coupling between INa ( para) and IK (Shal) such that Pum-mediated change in para results in a compensatory change in Shal. The identification of para as a direct target of Pum represents the first ion channel to be translationally regulated by this repressor and the location of the binding motif is the first example in an ORF rather than in the canonical 3'-untranslated region of target transcripts. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
36. The target specificity of the RNA binding protein Pumilio is determined by distinct co-factors
- Author
-
Changsoo Kim, Wijeong Jang, Ji Young Young Kim, Song Yeon Yeon Park, Ki-Sun Kwon, and Sumira Malik
- Subjects
0301 basic medicine ,animal structures ,Biophysics ,RNA-binding protein ,Cell fate determination ,Biology ,brat ,pumilio ,Biochemistry ,Cofactor ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Co factor ,Animals ,Drosophila Proteins ,RNA, Messenger ,mRNA stability ,Molecular Biology ,Psychological repression ,3' Untranslated Regions ,Research Articles ,RNA-Binding Proteins ,posttranscriptional ,Cell Biology ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,Drosophila melanogaster ,Gene Expression Regulation ,Neural function ,biology.protein ,RNA Interference ,Stem cell ,nanos ,030217 neurology & neurosurgery ,Protein Binding ,Transcription Factors ,Research Article - Abstract
Puf family proteins are translational regulators essential to a wide range of biological processes, including cell fate specification, stem cell self-renewal, and neural function. Yet, despite being associated with hundreds of RNAs, the underlying mechanisms of Puf target specification remain to be fully elucidated. In Drosophila, Pumilio – a sole Puf family protein – is known to collaborate with cofactors Nanos (Nos) and Brain Tumor (Brat); however, their roles in target specification are not clearly defined. Here, we identify Bag-of-marbles (Bam) as a new Pum cofactor in repression of Mothers against dpp (mad) mRNAs, for which Nos is known to be dispensable. Notably, our data show that Nos (but not Bam) was required for Pum association with hunchback (hb) mRNAs, a well-known target of Pum and Nos. In contrast, Bam (but not Nos) was required for Pum association with mad mRNAs. These findings show for the first time that Pum target specificity is determined not independently but in collaboration with cofactors.
- Published
- 2019
37. Drosophila as a Model for Assessing the Function of RNA-Binding Proteins during Neurogenesis and Neurological Disease
- Author
-
Ethan G. Wright and Eugenia C. Olesnicky
- Subjects
0301 basic medicine ,amyotrophic lateral sclerosis ,TDP-43 ,neurons ,RNA-binding protein ,RNA-binding proteins ,Review ,Biology ,brat ,shep ,03 medical and health sciences ,0302 clinical medicine ,C9orf72 ,medicine ,Fmr1 ,Molecular Biology ,Gene ,lcsh:QH301-705.5 ,spinal muscular atrophy ,FUS ,Regulation of gene expression ,Neurodegeneration ,Neurogenesis ,neurodegeneration ,Cell Biology ,medicine.disease ,FMR1 ,Neural stem cell ,030104 developmental biology ,lcsh:Biology (General) ,RNA splicing ,Drosophila ,Neuroscience ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
An outstanding question in developmental neurobiology is how RNA processing events contribute to the regulation of neurogenesis. RNA processing events are increasingly recognized as playing fundamental roles in regulating multiple developmental events during neurogenesis, from the asymmetric divisions of neural stem cells, to the generation of complex and diverse neurite morphologies. Indeed, both asymmetric cell division and neurite morphogenesis are often achieved by mechanisms that generate asymmetric protein distributions, including post-transcriptional gene regulatory mechanisms such as the transport of translationally silent messenger RNAs (mRNAs) and local translation of mRNAs within neurites. Additionally, defects in RNA splicing have emerged as a common theme in many neurodegenerative disorders, highlighting the importance of RNA processing in maintaining neuronal circuitry. RNA-binding proteins (RBPs) play an integral role in splicing and post-transcriptional gene regulation, and mutations in RBPs have been linked with multiple neurological disorders including autism, dementia, amyotrophic lateral sclerosis (ALS), spinal muscular atrophy (SMA), Fragile X syndrome (FXS), and X-linked intellectual disability disorder. Despite their widespread nature and roles in neurological disease, the molecular mechanisms and networks of regulated target RNAs have been defined for only a small number of specific RBPs. This review aims to highlight recent studies in Drosophila that have advanced our knowledge of how RBP dysfunction contributes to neurological disease.
- Published
- 2018
38. Saccular aneurysms in the post-Barrow Ruptured Aneurysm Trial era.
- Author
-
Catapano JS, Labib MA, Srinivasan VM, Nguyen CL, Rumalla K, Rahmani R, Cole TS, Baranoski JF, Rutledge C, Chapple KM, Ducruet AF, Albuquerque FC, Zabramski JM, and Lawton MT
- Abstract
Objective: The Barrow Ruptured Aneurysm Trial (BRAT) was a single-center trial that compared endovascular coiling to microsurgical clipping in patients treated for aneurysmal subarachnoid hemorrhage (aSAH). However, because patients in the BRAT were treated more than 15 years ago, and because there have been advances since then-particularly in endovascular techniques-the relevance of the BRAT today remains controversial. Some hypothesize that these technical advances may reduce retreatment rates for endovascular intervention. In this study, the authors analyzed data for the post-BRAT (PBRAT) era to compare microsurgical clipping with endovascular embolization (coiling and flow diverters) in the two time periods and to examine how the results of the original BRAT have influenced the practice of neurosurgeons at the study institution., Methods: In this retrospective cohort study, the authors evaluated patients with saccular aSAHs who were treated at a single quaternary center from August 1, 2007, to July 31, 2019. The saccular aSAH diagnoses were confirmed by cerebrovascular experts. Patients were separated into two cohorts for comparison on the basis of having undergone microsurgery or endovascular intervention. The primary outcome analyzed for comparison was poor neurological outcome, defined as a modified Rankin Scale (mRS) score > 2. The secondary outcomes that were compared included retreatment rates for both therapies., Results: Of the 1014 patients with aSAH during the study period, 798 (79%) were confirmed to have saccular aneurysms. Neurological outcomes at ≥ 1-year follow-up did not differ between patients treated with microsurgery (n = 451) and those who received endovascular (n = 347) treatment (p = 0.51). The number of retreatments was significantly higher among patients treated endovascularly (32/347, 9%) than among patients treated microsurgically (6/451, 1%) (p < 0.001). The retreatment rate after endovascular treatment was lower in the PBRAT era (9%) than in the BRAT (18%)., Conclusions: Similar to results from the BRAT, results from the PBRAT era showed equivalent neurological outcomes and increased rates of retreatment among patients undergoing endovascular embolization compared with those undergoing microsurgery. However, the rate of retreatment after endovascular intervention was much lower in the PBRAT era than in the BRAT.
- Published
- 2021
- Full Text
- View/download PDF
39. The asymmetrically segregating lncRNA cherub is required for transforming stem cells into malignant cells
- Author
-
Ilka Reichardt, Jonas Steinmann, Victoria Steinmann, Anne-Sophie Laurenson, Thomas R Burkard, Heike Harzer, François Bonnay, Lisa Landskron, Heinrich Reichert, and Jürgen A. Knoblich
- Subjects
0301 basic medicine ,Cell type ,neuroblasts ,Cell division ,QH301-705.5 ,Science ,Cellular differentiation ,Biology ,brat ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,lncRNA ,Neural Stem Cells ,Animals ,Drosophila Proteins ,cherub ,Biology (General) ,Progenitor cell ,Cells, Cultured ,Cell Proliferation ,Cancer Biology ,General Immunology and Microbiology ,D. melanogaster ,Brain Neoplasms ,General Neuroscience ,RNA-Binding Proteins ,General Medicine ,Neural stem cell ,Cell biology ,Disease Models, Animal ,tumorigenesis ,030104 developmental biology ,Cell Transformation, Neoplastic ,Developmental Biology and Stem Cells ,Stem Cell Tumors ,Cancer cell ,Neoplastic Stem Cells ,Medicine ,Drosophila ,RNA, Long Noncoding ,Stem cell ,Insight ,Developmental biology ,human activities ,Research Article - Abstract
Tumor cells display features that are not found in healthy cells. How they become immortal and how their specific features can be exploited to combat tumorigenesis are key questions in tumor biology. Here we describe the long non-coding RNA cherub that is critically required for the development of brain tumors in Drosophila but is dispensable for normal development. In mitotic Drosophila neural stem cells, cherub localizes to the cell periphery and segregates into the differentiating daughter cell. During tumorigenesis, de-differentiation of cherub-high cells leads to the formation of tumorigenic stem cells that accumulate abnormally high cherub levels. We show that cherub establishes a molecular link between the RNA-binding proteins Staufen and Syncrip. As Syncrip is part of the molecular machinery specifying temporal identity in neural stem cells, we propose that tumor cells proliferate indefinitely, because cherub accumulation no longer allows them to complete their temporal neurogenesis program., eLife digest Many biological signals control how cells grow and divide. However, cancer cells do not obey these growth-restricting signals, and as a result large tumors may develop. Recent experiments have suggested that stem cells – the precursors to the different types of specialized cells found in the body – are particularly important for generating tumors. A stem cell normally divides unequally to form a self-renewing cell and a more specialized cell (often a progenitor cell that will give rise to increasingly specialized cell types). The timing of when the specialization occurs can be key to guiding the ultimately produced cell progenies to their final identity. However, in a tumor cells can retain the ability to self-renew. Ultimately, the resulting ‘tumor stem cells’ become immortal and proliferate indefinitely. It is not fully understood why this uncontrolled proliferation occurs. Just like mammals (including humans), fruit flies can develop tumors. Some of the DNA mutations responsible for tumor development were already identified in flies as early as in the 1970s. This has made fruit flies a well-studied model system for uncovering the principle defects that cause tumors to form. Landskron et al. have now studied the neural stem cells found in brain tumors in fruit flies. Additional DNA mutations were not responsible for these cells becoming immortal. Instead, certain RNA molecules – products that are ‘transcribed’ from the DNA – were present in different amounts in tumor cells. The RNA that showed the greatest increase in tumor cells is a so-called long non-coding RNA named cherub. This RNA molecule has no important role in normal fruit flies, but is critical for tumor formation. Landskron et al. found that during cell division cherub segregates from the neural stem cells to the newly formed progenitor cells, where it breaks down over time. Progenitor cells that contain high levels of cherub give rise to tumor-generating neural stem cells. At the molecular level, cherubhelps two proteins to interact with each other: one called Syncrip that makes the neural stem cells take on a older identity, and another one (Staufen) that tethers it to the cell membrane. By restricting Syncrip to a particular location in the cell, cherub alters the timing of stem cell specialization, which contributes to tumor formation. Overall, the results presented by Landskron et al. reveal a new role for long non-coding RNAs: controlling the localization of the proteins that determine the fate of the cell. They also highlight a critical link between the timing of stem cell development and the proliferation of the cells. Further work is now needed to test whether the same control mechanism works in species other than fruit flies.
- Published
- 2018
- Full Text
- View/download PDF
40. Control of Drosophila Type I and Type II central brain neuroblast proliferation by bantam microRNA
- Author
-
Stephen M. Cohen and Ruifen Weng
- Subjects
animal structures ,Prospero ,Nerve Tissue Proteins ,Neuroblast ,Neural Stem Cells ,microRNA ,Animals ,Drosophila Proteins ,Cell Lineage ,Bantam ,Molecular Biology ,Brat ,Tissue homeostasis ,Cell Proliferation ,Neuroblast proliferation ,biology ,fungi ,Brain ,Nuclear Proteins ,MicroRNA ,biology.organism_classification ,Neural stem cell ,Cell biology ,DNA-Binding Proteins ,MicroRNAs ,Larva ,Drosophila ,Stem cell ,Drosophila Protein ,Developmental Biology ,Research Article ,Transcription Factors - Abstract
Post-transcriptional regulation of stem cell self-renewal by microRNAs is emerging as an important mechanism controlling tissue homeostasis. Here, we provide evidence that bantam microRNA controls neuroblast number and proliferation in the Drosophila central brain. Bantam also supports proliferation of transit-amplifying intermediate neural progenitor cells in type II neuroblast lineages. The stem cell factors brat and prospero are identified as bantam targets acting on different aspects of these processes. Thus, bantam appears to act in multiple regulatory steps in the maintenance and proliferation of neuroblasts and their progeny to regulate growth of the central brain., Summary: The Drosophila miRNA bantam regulates the expression of Brat and Prospero – known inhibitors of brain neuroblast proliferation – to modulate growth of the central brain.
- Published
- 2015
41. Coordinate post-transcriptional repression of Dpp-dependent transcription factors attenuates signal range during development
- Author
-
Catherine Sutcliffe, Fay G. Newton, Robin E. Harris, and Hilary L. Ashe
- Subjects
animal structures ,Cellular differentiation ,Medea ,Cell ,Blotting, Western ,Post-transcriptional repression ,Fluorescent Antibody Technique ,Biology ,Cell fate determination ,DNA-binding protein ,03 medical and health sciences ,0302 clinical medicine ,medicine ,BMP ,Animals ,Drosophila Proteins ,Pum ,Molecular Biology ,Psychological repression ,Transcription factor ,Brat ,Research Articles ,In Situ Hybridization ,030304 developmental biology ,Smad4 Protein ,0303 health sciences ,Gene knockdown ,Mad ,Ovary ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Schnurri ,Molecular biology ,Cell biology ,DNA-Binding Proteins ,Adult Stem Cells ,medicine.anatomical_structure ,Differentiation ,Drosophila ,Female ,030217 neurology & neurosurgery ,Developmental Biology ,Adult stem cell ,Transcription Factors - Abstract
Precise control of the range of signalling molecule action is crucial for correct cell fate patterning during development. For example, Drosophila ovarian germline stem cells (GSCs) are maintained by exquisitely short-range BMP signalling from the niche. In the absence of BMP signalling, one GSC daughter differentiates into a cystoblast (CB) and this fate is stabilised by Brain tumour (Brat) and Pumilio (Pum)-mediated post-transcriptional repression of mRNAs, including that encoding the Dpp transducer, Mad. However, the identity of other repressed mRNAs and the mechanism of post-transcriptional repression are currently unknown. Here, we identify the Medea and schnurri mRNAs, which encode transcriptional regulators required for activation and/or repression of Dpp target genes, as additional Pum-Brat targets, suggesting that tripartite repression of the transducers is deployed to desensitise the CB to Dpp. In addition, we show that repression by Pum-Brat requires recruitment of the CCR4 and Pop2 deadenylases, with knockdown of deadenylases in vivo giving rise to ectopic GSCs. Consistent with this, Pum-Brat repression leads to poly(A) tail shortening and mRNA degradation in tissue culture cells, and we detect a reduced number of Mad and shn transcripts in the CB relative to the GSC based on single molecule mRNA quantitation. Finally, we show generality of the mechanism by demonstrating that Brat also attenuates pMad and Dpp signalling range in the early embryo. Together our data serve as a platform for understanding how post-transcriptional repression restricts interpretation of BMPs and other cell signals in order to allow robust cell fate patterning during development., Summary: The translational repressors Brat and Pumilio attenuate Dpp signalling range in the Drosophila female germline and early embryo to ensure precise cell fate patterning.
- Published
- 2015
42. An evaluation of the SAFIRE grading scale as a predictor of long-term outcomes for patients in the Barrow Ruptured Aneurysm Trial.
- Author
-
Catapano JS, Labib MA, Frisoli FA, Cadigan MS, Baranoski JF, Cole TS, Zhou JJ, Nguyen CL, Whiting AC, Ducruet AF, Albuquerque FC, and Lawton MT
- Abstract
Objective: The SAFIRE grading scale is a novel, computable scale that predicts the outcome of aneurysmal subarachnoid hemorrhage (aSAH) patients in acute follow-up. However, this scale also may have prognostic significance in long-term follow-up and help guide further management., Methods: The records of all patients enrolled in the Barrow Ruptured Aneurysm Trial (BRAT) were retrospectively reviewed, and the patients were assigned SAFIRE grades. Outcomes at 1 year and 6 years post-aSAH were analyzed for each SAFIRE grade level, with a poor outcome defined as a modified Rankin Scale score > 2. Univariate analysis was performed for patients with a high SAFIRE grade (IV or V) for odds of poor outcome at the 1- and 6-year follow-ups., Results: A total of 405 patients with confirmed aSAH enrolled in the BRAT were analyzed; 357 patients had 1-year follow-up, and 333 patients had 6-year follow-up data available. Generally, as the SAFIRE grade increased, so did the proportion of patients with poor outcomes. At the 1-year follow-up, 18% (17/93) of grade I patients, 22% (20/92) of grade II patients, 32% (26/80) of grade III patients, 43% (38/88) of grade IV patients, and 75% (3/4) of grade V patients were found to have poor outcomes. At the 6-year follow-up, 29% (23/79) of grade I patients, 24% (21/89) of grade II patients, 38% (29/77) of grade III patients, 60% (50/84) of grade IV patients, and 100% (4/4) of grade V patients were found to have poor outcomes. Univariate analysis showed that a SAFIRE grade of IV or V was associated with a significantly increased risk of a poor outcome at both the 1-year (OR 2.5, 95% CI 1.5-4.2; p < 0.001) and 6-year (OR 3.7, 95% CI 2.2-6.2; p < 0.001) follow-ups., Conclusions: High SAFIRE grades are associated with an increased risk of a poor recovery at late follow-up.
- Published
- 2021
- Full Text
- View/download PDF
43. Biti braća: zadaća i izazov. Varijacije na temu bratstvo u knjizi Postanka
- Author
-
Miljenko Odrljin
- Subjects
Kajin ,Abel ,brat ,bližnji ,sukob ,dijalog ,Cain ,brother ,neighbour ,conflict ,dialogue - Abstract
Biblijsko razmišljanje na temu bratskih odnosa počinje u Sta- rom zavjetu na pragmatičan način pripoviješću o tragičnom slu- čaju Kajina i Abela (Post 4). Kasnije se na različite načine, u više navrata, ponavlja u zgodama i nezgodama patrijarha. Najtipični- ji su slučajevi oni koji se odnose na Abrahamove sinove: Jišma- ela i Izaka (Post 21), na Izakove sinove blizance: Ezava i Jakova (Post 25; 27; 32-33), na Jakovljeve sinove Josipa i njegovu bra- ću (Post 37-50). No kakav se pojam bratskih odnosa promovira u ovim pripovijestima? Mogu li se odgonetnuti tipični motivi za te i takve pripovijesti? Koja je uloga njihova ponavljanja i eventual- nih promjena?, Biblical reflections on the theme of fraternal relations begin in a pragmatic way in the Old Testament with a story of the tragic case of Cain and Abel (Gen 4). Later on it is repeated in different ways, on many occasions, in the fortunes and misfortunes of the Patriarchs. The most typical are the ones related to Abraham’s sons: Ishmael and Isaac (Gen 21), to Isaac’s twin sons: Esau and Jacob (Gen 25; 27; 32-33), to sons of Jacob: Joseph and his brothers (Gen 37-50). But what concept of fraternal relations is promoted in these stories? Can you figure out the typical moti- ves for these and such stories? What is the role of their repetiti- ons and possible changes?
- Published
- 2016
44. Biti braća: zadaća i izazov. Varijacije na temu bratstvo u knjizi Postanka
- Author
-
Odrljin, Miljenko
- Subjects
Kajin ,Abel ,brat ,bližnji ,sukob ,dijalog - Abstract
Biblijsko razmišljanje na temu bratskih odnosa počinje u Sta- rom zavjetu na pragmatičan način pripoviješću o tragičnom slu- čaju Kajina i Abela (Post 4). Kasnije se na različite načine, u više navrata, ponavlja u zgodama i nezgodama patrijarha. Najtipični- ji su slučajevi oni koji se odnose na Abrahamove sinove: Jišma- ela i Izaka (Post 21), na Izakove sinove blizance: Ezava i Jakova (Post 25 ; 27 ; 32-33), na Jakovljeve sinove Josipa i njegovu bra- ću (Post 37-50). No kakav se pojam bratskih odnosa promovira u ovim pripovijestima? Mogu li se odgonetnuti tipični motivi za te i takve pripovijesti? Koja je uloga njihova ponavljanja i eventual- nih promjena?
- Published
- 2016
45. TRIM-NHL proteins in development and disease
- Author
-
Rafal Ciosk and Cristina Tocchini
- Subjects
Ubiquitin-Protein Ligases ,Mei-P26 ,Morphogenesis ,Disease ,Computational biology ,Biology ,medicine.disease_cause ,NHL ,Tripartite Motif Proteins ,TRIM71 ,TRIM ,LIN-41 ,Limb girdle muscular dystrophy 2H ,Bardet-Biedl syndrome ,medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Nuclear protein ,Progenitor cell ,Brat ,Transcription factor ,TRIM32 ,Phylogeny ,Genetics ,Mutation ,Cell growth ,Nuclear Proteins ,Cell Biology ,Sarcotubular myopathy ,Carrier Proteins ,Developmental Biology ,Transcription Factors - Abstract
TRIM-NHL proteins are key regulators of developmental transitions, for example promoting differentiation, while inhibiting cell growth and proliferation, in stem and progenitor cells. Abnormalities in these proteins have been also associated with human diseases, particularly affecting muscular and neuronal functions, making them potential targets for therapeutic intervention. The purpose of this review is to provide a systematic and comprehensive summary on the most studied TRIM-NHL proteins, highlighting examples where connections were established between structural features, molecular functions and biological outcomes.
- Published
- 2015
46. This Quick Roasted Squash Salad Recipe Is Great for Thanksgiving.
- Author
-
Greenwald, Kitty
- Subjects
- *
SQUASHES , *SALADS - Published
- 2021
47. This Steak Sauce Recipe Is Magic on Leaner Cuts.
- Author
-
Greenwald, Kitty
- Subjects
- *
SAUCES , *CONVENIENCE foods - Published
- 2021
48. Duck Is Delicious, and This Two-Step Method Makes It Easy to Get Right.
- Author
-
Greenwald, Kitty
- Subjects
- *
CONVENIENCE foods - Published
- 2021
49. The target specificity of the RNA binding protein Pumilio is determined by distinct co-factors.
- Author
-
Malik S, Jang W, Park SY, Kim JY, Kwon KS, and Kim C
- Subjects
- 3' Untranslated Regions genetics, Animals, Cell Line, DNA-Binding Proteins metabolism, Drosophila Proteins metabolism, Drosophila melanogaster cytology, Drosophila melanogaster metabolism, Protein Binding, RNA Interference, RNA, Messenger genetics, RNA, Messenger metabolism, RNA-Binding Proteins metabolism, Transcription Factors metabolism, DNA-Binding Proteins genetics, Drosophila Proteins genetics, Drosophila melanogaster genetics, Gene Expression Regulation, RNA-Binding Proteins genetics, Transcription Factors genetics
- Abstract
Puf family proteins are translational regulators essential to a wide range of biological processes, including cell fate specification, stem cell self-renewal, and neural function. Yet, despite being associated with hundreds of RNAs, the underlying mechanisms of Puf target specification remain to be fully elucidated. In Drosophila , Pumilio - a sole Puf family protein - is known to collaborate with cofactors Nanos (Nos) and Brain Tumor (Brat); however, their roles in target specification are not clearly defined. Here, we identify Bag-of-marbles (Bam) as a new Pum cofactor in repression of Mothers against dpp ( mad ) mRNAs, for which Nos is known to be dispensable. Notably, our data show that Nos (but not Bam) was required for Pum association with hunchback ( hb ) mRNAs, a well-known target of Pum and Nos. In contrast, Bam (but not Nos) was required for Pum association with mad mRNAs. These findings show for the first time that Pum target specificity is determined not independently but in collaboration with cofactors., (© 2019 The Author(s).)
- Published
- 2019
- Full Text
- View/download PDF
50. Drosophila as a Model for Assessing the Function of RNA-Binding Proteins during Neurogenesis and Neurological Disease.
- Author
-
Olesnicky, Eugenia C. and Wright, Ethan G.
- Subjects
DROSOPHILA ,RNA ,DEVELOPMENTAL neurobiology ,NEURAL stem cells ,NEURONS - Abstract
An outstanding question in developmental neurobiology is how RNA processing events contribute to the regulation of neurogenesis. RNA processing events are increasingly recognized as playing fundamental roles in regulating multiple developmental events during neurogenesis, from the asymmetric divisions of neural stem cells, to the generation of complex and diverse neurite morphologies. Indeed, both asymmetric cell division and neurite morphogenesis are often achieved by mechanisms that generate asymmetric protein distributions, including post-transcriptional gene regulatory mechanisms such as the transport of translationally silent messenger RNAs (mRNAs) and local translation of mRNAs within neurites. Additionally, defects in RNA splicing have emerged as a common theme in many neurodegenerative disorders, highlighting the importance of RNA processing in maintaining neuronal circuitry. RNA-binding proteins (RBPs) play an integral role in splicing and post-transcriptional gene regulation, and mutations in RBPs have been linked with multiple neurological disorders including autism, dementia, amyotrophic lateral sclerosis (ALS), spinal muscular atrophy (SMA), Fragile X syndrome (FXS), and X-linked intellectual disability disorder. Despite their widespread nature and roles in neurological disease, the molecular mechanisms and networks of regulated target RNAs have been defined for only a small number of specific RBPs. This review aims to highlight recent studies in Drosophila that have advanced our knowledge of how RBP dysfunction contributes to neurological disease. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.