Search

The Minas artisanal cheese is a traditional product in its way of producing. Produced in the Minas Gerais state, Brazil, this cheese is made using raw cow's milk with the addition of an endogenous starter culture called "pingo", responsible for inoculating specific microorganisms that could enhance flavor and sensorial aspects. There are seven regions able to produce and commercialize this product - Araxá, Campo das Vertentes, Canastra Cerrado, Serra do Salitre, Serro and Triângulo Mineiro. This study aimed to assess the bacterial community of raw milk, endogenous starter culture and to uncover possible shifts in the bacterial community of the rind and core of cheeses at sixty days of ripening located in the Serra do Salitre region by Illumina MiSeq 16S rRNA gene amplicon sequencing. Raw milk and starter culture are responsible for inoculating specific bacteria into the cheese, with Planococcaceae and Streptococcaceae being prevalent throughout ripening time. The Planococcaceae family seems to develop strong interactions with the Leuconostocaceae family on the surface of these cheeses, and is associated with environmental aspects of the region, probably leading to a microbial signature of these products. Additionally, abiotic factors such as geographical location, moisture and acidity are major drivers in the microbial shift. • The microbial community of Minas artisanal cheese is greatly influenced by abiotic factors and there is a natural adaptation of microbial communities regarding their origin. • Milk and starter cultures contribute different bacteria to the cheese environment. • The Streptococcaceae family is relevant in the Minas artisanal cheese. • Cheese rind bacteria are greatly influenced by environmental aspects of the Serra do Salitre region. • The Planococcaceae family may contribute to a unique microbial signature of the cheese. [ABSTRACT FROM AUTHOR]

The intrauterine environment provides a key interface between the mother and the developing fetus during pregnancy, and is a target for investigating mechanisms of fetal programming. Studies have demonstrated an association between prenatal stress and neurodevelopmental disorders. The role of the intrauterine environment in mediating this effect is still being elucidated. In this review, we discuss emerging preclinical and clinical evidence suggesting the existence of microbial communities in utero. We also outline possible mechanisms of bacterial translocation to the intrauterine environment and immune responses to the presence of microbes or microbial components. Lastly, we overview the effects of intrauterine inflammation on neurodevelopment. We hypothesize that maternal gestational stress leads to disruptions in the maternal oral, gut, and vaginal microbiome that may lead to the translocation of bacteria to the intrauterine environment, eliciting an inflammatory response and resulting in deficits in neurodevelopment. The existence of an intrauterine microbiome in a healthy pregnancy is highly controversial. While several recent experiments have identified bacterial communities within the placenta and uterus, others indicate that such findings could be due to contamination. There is emerging evidence that the microbiota within the intrauterine environment may originate from the oral cavity, gut, or vagina. Maternal gestational stress has been associated with inflammation in utero. Intrauterine inflammation has been linked to detrimental neurodevelopmental outcomes, both structurally and functionally. [ABSTRACT FROM AUTHOR]

Graphical abstract Highlights • ESBL detection in Escherichia coli from European free tailed-bats (Tadarida teniotis). • High prevalence of CTX-M-1 and CTX-M-3 beta-lactamases. • Bats are potential vectors of antimicrobial-resistant bacteria in the environment. • First report on ESBL-producing E. coli from bats in Portugal. Abstract The main aim of this study was to characterize the diversity of extended-spectrum beta-lactamases (ESBLs) in Escherichia coli isolates from European free tailed-bats (Tadarida teniotis) in Portugal. ESBL-producing E. coli isolates were recovered from 14 of 146 faecal samples (9.6%) and a total of 19 isolates were completely characterized. The more prevalent beta-lactamase genes detected were bla CTX-M-1 (57.9%) and bla CTX-M-3 (36.8%), followed by bla SHV (31.6%), bla TEM (21.1%), bla OXA (10.5%) and bla CTX-M-9 (10.5%). Among other associated resistance genes studied, tet (A) and tet (B) were predominant and fimA was the main virulence factor detected. Phylogroups D (47.4%) and A (31.6%) were the more prevalent, followed by group B2 (21.1%). Bats are reservoirs of antimicrobial-resistant bacteria and resistance determinants and is important in further studies to identify the main sources of pollution in the environment, such as water or insects that may contain these multiresistant organisms. [ABSTRACT FROM AUTHOR]

Airborne microorganisms, especially the pathogenic microorganisms, emitted from animal feeding operations (AFOs) may harm the environment and public health and threaten the biosecurity of the farm and surrounding environment. Electrolyzed water (EW), which was considered to be an environmentally friendly disinfectant, may be a potential spraying medium of wet scrubber for airborne microorganism emission reduction. A laboratory test was conducted to investigate the airborne bacteria (CB) removal efficiency of the wet scrubber by EW spray with different designs and operating parameters. Both the available choline (AC) initial loss rate and AC traveling loss rate of acidic electrolyzed water (AEW; pH = 1.35) were much higher than those of slightly acidic electrolyzed water (SAEW; pH = 5.50). Using one spraying stage with 4 m sec−1 air speed in the duct, the no detect lines (NDLs) of SAEW (pH = 5.50) for airborne Escherichia coli, Staphylococcus aureus, and Salmonella enteritidis removal were all 50 mg L−1, whereas the NDLs of AEW (pH = 1.35) for airborne E. coli, S. aureus, and S. enteritidis removal increased to 70, 90, and 90 mg L−1, respectively. The NDLs of SAEW (pH = 5.50) for airborne E. coli, S. aureus, and S. enteritidis were lower than those of AEW (pH = 1.35) at single spraying stage. Increase in the number of stages lowered the NDLs of both SAEW (pH = 5.50) and AEW (pH = 1.35) for airborne E. coli, S. aureus, and S. enteritidis. EW with a higher available chlorine concentration (ACC) was needed at air speed of 6 m sec−1 to reach the same airborne CB removal efficiency as that at air speed of 4 m sec−1. The results of this study demonstrated that EW spray wet scrubbers could be a very effective and feasible airborne CB mitigation technology for AFOs. Implications: It is difficult to effectively reduce airborne bacteria emitted from animal feeding operations (AFOs). Electrolyzed water (EW) with disinfection effect and acidity is a potential absorbent for spray in wet scrubber to remove microorganisms and ammonia. Based on the field test results, a laboratory experiment we conducted this time was to optimize the design and operation parameters to improve the airborne bacteria removal efficiency. A better understanding of the EW application in the wet scrubber can contribute to the mitigation of airborne bacteria from animal houses and improve the atmosphere air quality. [ABSTRACT FROM AUTHOR]

Campylobacter jejuni is a microaerophilic bacterial species which is a major food-borne pathogen worldwide. Attachment and biofilm formation have been suggested to contribute to the survival of this fastidious bacteria in the environment. In this study the attachment of three C. jejuni strains (C. jejuni strains 2868 and 2871 isolated from poultry and ATCC 33291) to different abiotic surfaces (stainless steel, glass and polystyrene) alone or with Pseudomonas aeruginosa biofilms on them, in air at 25°C and under static or flow conditions, were investigated using a modified Robbins Device. Bacteria were enumerated and scanning electron microscopy was carried out. The results indicated that both C. jejuni strains isolated from poultry attached better to Pseudomonas aeruginosa biofilms on abiotic surfaces than to the surfaces alone under the different conditions tested. This suggests that biofilms of other bacterial species may passively protect C. jejuni against shear forces and potentially oxygen stress which then contribute to their persistence in environments which are detrimental to them. By contrast the C. jejuni ATCC 33291 strain did not attach differentially to P. aeruginosa biofilms, suggesting that different C. jejuni strains may have alternative strategies for persistence in the environment. This study supports the hypothesis that C. jejuni do not form biofilms per se under conditions they encounter in the environment but simply attach to surfaces or biofilms of other species. [ABSTRACT FROM AUTHOR]

This paper is concerned with a nonlocal epidemic model arising from the spread of an epidemic by oral-fecal transmission. Comparing with the previous works, here we extend the model in Capasso and Maddalena, Nonlinear Phenom Math Sci. 41:207–217 (1982) by including a spatial convolution term and a discrete delay term corresponding to the dispersal of bacteria in the environment and the latent period of the virus, respectively. Besides existence and asymptotic behavior, the main part of the paper is devoted to the stability of the traveling wavefronts under some monostable assumptions. By using a comparison theorem and the weighted energy method with a suitably selected weight function, we show that all the non-critical traveling waves are exponentially stable. Finally, we apply our results to a specific epidemic model and discuss the effect of time delay on the stability of wavefront. [ABSTRACT FROM AUTHOR]

Few characteristics are more important to a bacterium than the substrates it consumes. It is hard to identify what substrates are consumed by bacteria in natural communities, however, because most bacteria have not been cultured. Here we develop a method that uses fluorescent substrate analogs, cell sorting, and DNA sequencing to identify substrates taken up by bacteria. We deployed this method using 2-NBDG, a fluorescent glucose analog, and bacteria of the bovine rumen. This method revealed over forty different bacteria (amplicon sequence variants; ASVs) from the rumen that take up glucose. Nearly half of these ASVs represent previously uncultured bacteria. We attempted to grow these ASVs on agar media, and we confirmed that nearly two25 thirds resisted culture. In co-culture experiments, the fluorescent label of 2-NBDG was not transferred to non-target bacteria by cross-feeding. Because it is not affected by cross-feeding, our method has an advantage over stable isotope probing. Though we focus on glucose, many substrates can be labeled with the fluorophore NBD. Our method represents a new paradigm for identifying substrates used by uncultured bacteria. It will help delineate the niche of bacteria in their environment. [ABSTRACT FROM AUTHOR]

Multiple species of bacteria oxidize methane in the environment after it is produced by anaerobic ecosystems. These organisms provide reduced carbon substrates for species that cannot oxidize methane themselves, thereby serving a key role in these niches while also sequestering this potent greenhouse gas before it enters the atmosphere. Deciphering the molecular details of how methane-oxidizing bacteria interact in the environment enables us to understand an important aspect that shapes the structure and function of these communities. Here we show that many members of the Methylomonas genus possess a LuxR-type acyl-homoserine lactone (acyl-HSL) receptor/transcription factor highly homologous to MbaR from the quorum sensing (QS) system of Methylobacter tundripaludum, another methane-oxidizer that has been isolated from the same environment. We reconstitute this detection system in Escherichia coli and also use mutant and transcriptomic analysis to show that the receptor/transcription factor from Methylomonas species strain LW13 (LW13) is active and alters LW13 gene expression in response to the acyl-HSL produced by M. tundripaludum. These findings provide a molecular mechanism for how two species of bacteria that may compete for resources in the environment can interact in a specific manner through a chemical signal. [ABSTRACT FROM AUTHOR]

The aim of this study was to investigate the occurrence and diversity of pathogenic bacteria in the environment at a livestock farm in Limpopo Province. Environmental samples were collected from three sampling locations: cattle camp (CC), sheep camp (SHC), and goat camp (GC). Samples were processed and analysed for total bacterial counts in the Biotechnology Laboratory, University of Limpopo, South Africa. Identifications were done with Matrix Assisted Laser Disorption Ionisation Time of Flight Mass Spectometry (MALDI-TOF MS) using the simplified on plate technique. The colony forming unit formula per gram of environmental sample (CFU/g) was used to determine total bacterial counts. High counts were observed in CC and low counts in SHC for both soil and faecal samples. Bacillus species were the most dominant across the sampling locations for soil samples. Bacillus cereus occurred in 36 samples (33%), however, the frequency of isolation dominated in the CC with (44.4%), GC (22.2%) and SHC (13%). Staphylococcus aureus had the least frequency (2.2%) followed by Listeria monocytogenes (4.4%). In faecal samples, the occurrence and level of contamination with bacterial species varied across sampling locations with Escherichia coli dominating in the CC with 20% frequency, and abscent from SHC and GC. [ABSTRACT FROM AUTHOR]

Abstract Manures are important soil nutrient conditioners and source of several pathogenic bacteria that potentially contribute to groundwater and surface water pollution. The best management practices need a solid understanding of manure sources, concentrations, and strategies to limit the number of bacteria in natural soil environment. In this study, a series of soil column experiments were conducted to investigate how bacteria mobility can potentially be influenced by retention mechanisms while moving through undisturbed saturated soil. This was assessed by bacteria retention profiles and mobility indices including the maximum transported (C max-T) and retained (C max-R) concentrations, filtration coefficient (λ f) and the maximum depth of bacteria transport (Z max). Three different soil samples (sandy, loamy and silty clay loam) were enriched with three types of manures (cow, sheep, and poultry), placed on top of three soil columns (16 cm diameter, 30 cm height) with an equivalent of 10 Mg ha−1 (dry basis) summing up to a total of 36 columns. Leaching was performed under saturated steady-state conditions (i.e. , 1.62 cm min−1) for a duration of 4 pore volumes. After percolation, soil columns were sliced into six 5-cm interval layers and slices were characterized for retained bacteria. Results showed irregular exponential or quasi-exponential bacteria retention profiles for cow and sheep manures, whereas uniform-shaped profiles occurred for poultry manure. The latter variant also switched to exponential shape for the sandy soil at the highest and lowest C max-T and C max-R values due to higher pore water velocity. The λ f and the Z max values were also found to be affected by soil texture and manure origin. The λ f was higher for poultry manure due to higher free-cell transport of bacteria most probably induced by higher amount of soluble mobile components. However, the greater amounts of transported wooden materials released from cow and sheep manures acted as harbors for bacteria. Accordingly, the filtration rate decreased and tailing effects for bacteria transport increased. The results also suggest that the practices and strategies for using manures could be optimized according to the respective transport behavior to manage the bacteria retention with respect to soil and manure types to reduce soil and water pollution. Graphical abstract Image 1 Highlights • Fecal coliforms retention mode was investigated for three soil textures. • Soil texture and manure types controlled bacteria deposition. • Poultry manure-released bacteria are more affected by soil texture. • Physical manure properties affected maximum transported and retained bacteria. • Solubility of the manure components is important for manure management strategies. [ABSTRACT FROM AUTHOR]

The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Liviidae), is the vector of the bacterium responsible for huanglongbing, a deadly plant disease affecting citrus worldwide. We investigated the effects of wind direction and speed on flight duration and direction of D. citri, as well as the effects of temperature and barometric pressure on sustained flight duration of D. citri. Experiments were performed with laboratory flight mills and wind tunnels. Flight activity of D. citri increased with increasing temperature. Of the few insects that flew at 18°C, most performed short duration flights (<60 s). When exposed to temperatures between 21 and 28°C, D. citri performed long duration flights (>60 s). In addition, the distance covered increased with temperature. Interestingly, males were more sensitive to cold temperature and flew significantly shorter distances than females at 21 and 25°C. Barometric pressure recorded before and during the flight mill experiment suggested that decreasing pressure reduced distance flown by D. citri. Flight direction was strongly influenced by wind. In wind tunnel experiments where psyllids were challenged to reach citrus leaf flush positioned either downwind or upwind, most D. citri moved downwind when exposed to continuous airflow. In a subsequent experiment, we challenged psyllids to pulsed wind blowing at higher speeds. In this case, most psyllids progressed upwind, suggesting upwind movement by psyllids during pauses within pulsed airflow. Collectively, the results indicate that D. citri are able to modify their flight behavior in response to abiotic factors. [ABSTRACT FROM AUTHOR]

Helicobacter pylori infection is a risk factor for chronic active gastritis, peptic ulcers, gastric carcinoma and lymphoma. Although the infection may be acquired through different transmission routes, the presence and viability of H. pylori in water sources are not well known. Therefore, the aim of our study was to analyse the viability of H. pylori cells in urban surface waters collected at the Vallparadís public park in Terrassa, Barcelona, Spain. The water samples were analysed by viability quantitative polymerase chain reaction (qPCR) using propidium monoazide and specific primers for the H. pylori vacuolating cytotoxin (vacA gene). Viable H. pylori were found in 91.3% of the samples analysed, with an average concentration of 3.46±1.06 log cell 100 mL-1. Our work proves a quick and simple procedure for evaluating viable H. pylori cells in environmental samples by qPCR. Furthermore, the results provide evidence that urban surface waters may contain considerable levels of viable H. pylori cells, thus indicating they are a potential source of infection, which represents a public health concern. [ABSTRACT FROM AUTHOR]

Quantitative polymerase chain reaction (qPCR) is now commonly used to detect fecal indicator bacteria (FIB) as well as pathogens in water samples. However, DNA loss during sample processing can cause underestimation of target genes. In this study, we created a sample process control strain (SPC) by genetically engineering a non-pathogenic, Gram-negative bacterium Pseudogulbenkiania sp. strain NH8B. The SPC strain, named NH8B-1D2, has a kanamycin-resistance gene inserted to one of the 23S rRNA genes. To specifically quantify the SPC strain, a new TaqMan qPCR assay was developed. To obtain the relationship between the DNA recovery efficiencies of various pathogens and those of the SPC strain, known amount of E. coli O157:H7, Salmonella Typhimurium, Campylobacter jejuni , or Listeria monocytogenes cells were co-spiked with the SPC strain to environmental water samples. The DNA recovery efficiencies were calculated by comparing the quantity of bacterial cells inoculated to water samples prior to filtration and DNA extraction, and those measured by qPCR. We then obtained the ratios in the recovery efficiencies between pathogens and SPC strain ( RR PATH/SPC ). The RR PATH/SPC values obtained using Oono pond water collected in Japan were used as a pathogen-specific constant to estimate the accurate concentrations of pathogens in water samples collected from Mississippi River in Minnesota. Estimated pathogen concentrations were not significantly different from the inoculated pathogen concentration, suggesting our normalization approach is useful to estimate the accurate concentrations of pathogens in environmental water samples. The qPCR assay targeting the SPC strains and FIB were incorporated into the microfluidic qPCR chip format (PBQ chip ver. 2); therefore, we can simultaneously quantify multiple pathogens, FIB, and the SPC strain in high throughput from many water samples. This new tool can be useful for water quality monitoring and risk assessment. [ABSTRACT FROM AUTHOR]

Abstract: The density of organisms declines with size, because larger organisms need more energy than smaller ones and energetic losses occur when larger organisms feed on smaller ones. A potential expression of density‐size distributions are Normalized Biomass Size Spectra (NBSS), which plot the logarithm of biomass independent of taxonomy within bins of logarithmic organismal size, divided by the bin width. Theoretically, the NBSS slope of multi‐trophic communities is exactly −1.0 if the trophic transfer efficiency (TTE, ratio of production rates between adjacent trophic levels) is 10% and the predator‐prey mass ratio (PPMR) is fixed at 104. Here we provide evidence from four multi‐trophic lake food webs that empirically estimated TTEs correspond to empirically estimated slopes of the respective community NBSS. Each of the NBSS considered pelagic and benthic organisms spanning size ranges from bacteria to fish, all sampled over three seasons in 1 yr. The four NBSS slopes were significantly steeper than −1.0 (range −1.14 to −1.19, with 95% CIs excluding −1). The corresponding average TTEs were substantially lower than 10% in each of the four food webs (range 1.0% to 3.6%, mean 1.85%). The overall slope merging all biomass‐size data pairs from the four systems (−1.17) was almost identical to the slope predicted from the arithmetic mean TTE of the four food webs (−1.18) assuming a constant PPMR of 104. Accordingly, our empirical data confirm the theoretically predicted quantitative relationship between TTE and the slope of the biomass‐size distribution. Furthermore, we show that benthic and pelagic organisms can be merged into a community NBSS, but future studies have yet to explore potential differences in habitat‐specific TTEs and PPMRs. We suggest that community NBSS may provide valuable information on the structure of food webs and their energetic pathways, and can result in improved accuracy of TTE‐estimates. [ABSTRACT FROM AUTHOR]

Lignin depolymerization is a challenging process in biorefinery due to the recalcitrant and complex structure of lignin. This challenge was herein addressed via elaborating a new strategy of combining the bacterial strain Pandoraea sp. B-6 (hereafter B-6) with a deep eutectic solvent (DES) to pretreat rice straw (RS). In this approach, DES effectively depolymerized lignin yet easily caused sugar loss under severe conditions. B-6 not only overcame the obstacle of lignin droplets, but also significantly improved enzymatic digestibility. After B-6 assisted DES pretreatment, the reducing sugar yield increases by 0.3–1.5 times over DES pretreatment and 0.9–3.1 times over the untreated RS. Furthermore, a “cornhusking” mechanism explaining the improvement of the enzymatic digestibility by B-6 was suggested based on physicochemical characterizations of the untreated and pretreated RS. The findings provided a comprehensive perspective to establish a DES−microbial process for lignocellulose pretreatment. [ABSTRACT FROM AUTHOR]

Bacterial dormancy is a valuable survival strategy upon challenging environmental conditions. Dormant cells tolerate the consequences of high stress levels and may re-populate the environment upon return to favorable conditions. Antibiotic-tolerant bacteria-termed persisters-regularly cause relapsing infections, increase the likelihood of antibiotic resistance, and, therefore, earn increasing attention. Their generation often depends on toxins from chromosomal toxin-antitoxin systems. Here, we review recent insights concerning RNA-based control of toxin synthesis, and discuss possible implications for persister generation. [ABSTRACT FROM AUTHOR]

Increasing efforts have been devoted to exploring the impact of environmental stresses on soil bacterial communities, but the work on the archaeal community is seldom. Here, we constructed microcosm experiments to investigate the responses of archaeal communities to the subsequent dry-rewetting (DW) disturbance in two contrasting soils (fluvo-aquic and red soil) after 6 years of copper pollution. Ten DW cycles were exerted on the two soils with different copper levels, followed by a 6-week recovery period. In both soils, archaeal diversity (Shannon index) in the high copper-level treatments increased over the incubation period, and archaeal community structure changed remarkably as revealed by the non-metric multidimensional scaling ordinations. In both soils, copper pollution altered the response of dominant operational taxonomic units (OTUs) to the DW disturbance. Throughout the incubation and recovery period, the resistance of archaeal abundance to the DW disturbance was higher in the copper-polluted soils than soils without pollution. Taken together, copper pollution altered the response of soil archaeal diversity and community composition to the DW disturbance and increased the resistance of the archaeal abundance. These findings have important implications for understanding soil microbial responses to ongoing environmental change. [ABSTRACT FROM AUTHOR]

Arsenotrophic bacteria contribute to the nutrient cycling in arsenic (As) affected groundwater. This study employed a culture-independent and -dependent investigation of arsenotrophic microbiomes in As affected groundwater samples collected from Madhabpur, Sonatengra, and Union Porishod in Singair Upazila, Manikganj, Bangladesh. Total As contents, detected by Atomic Absorption Spectrophotometry ( AAS) of the samples, were 47 µg/L (Madhabpur, SNGW-1), 53 µg/L (Sonatengra, SNGW-2), and 12 µg/L (Union porishod, SNGW-3), whereas the control well ( SNGW-4; depths >150 m) showed As content of 6 µg/L. Denaturing Gradient Gel Electrophoresis ( DGGE) analysis of the amplified 16S rRNA gene from As-affected groundwater samples revealed the dominance of aerobic bacteria Pseudomonas within heterogeneous bacterial populations. DGGE of heterotrophic enrichments supplemented with arsenite [As ( III)] for 4 weeks showed the dominance of Chryseobacterium, Flavobacterium, and Aquabacterium, whereas the dominant genera in that of autotrophic enrichments were Aeromonas, Acinetobacter, and Pseudomonas. Cultured bacteria retrieved from both autotrophic and heterotrophic enrichments were distinguished into nine genotypes belonging to Chryseobacterium, Acinetobacter, Escherichia, Pseudomonas, Stenotrophomonas, Janibacter, Staphylococcus, and Bacillus. They exhibited varying range of As( III) tolerance from 4 to 27 mM. As( III) transformation potential was confirmed within the isolates with oxidation rate as high as 0.143 mM/h for Pseudomonas sp. Sn 28. The arsenotrophic microbiome specifies their potential role in groundwater As-cycling and their genetic information provide the scientific basis for As-bioremediation. [ABSTRACT FROM AUTHOR]

The influence of precipitation on coliform bacteria detection rates in domestic wells was investigated using data collected through the New Jersey Private Well Testing Act. Measured precipitation data from the National Weather Service ( NWS) monitoring stations was compared to estimated data from the Multisensor Precipitation Estimate ( MPE) in order to determine which source of data to include in the analyses. A strong concordance existed between these two precipitations datasets; therefore, MPE data was utilized as it is geographically more specific to individual wells. Statewide, 10 days of cumulative precipitation prior to testing was found to be an optimal period influencing the likelihood of coliform detections in wells. A logistic regression model was developed to predict the likelihood of coliform occurrence in wells from 10 days of cumulative precipitation data and other predictive variables including geology, season, coliform bacteria analysis method, pH, and nitrate concentration. Total coliform ( TC) and fecal coliform or Escherichia coli ( FC/ EC) were detected more frequently when the preceding 10 days of cumulative precipitation exceeded 34.5 and 54 mm, respectively. Furthermore, the likelihood of coliform detection was highest in wells located in the bedrock region, during summer and autumn, analyzed with the enzyme substrate method, with pH between 5 and 6.99, and (for FC/ EC but not TC) nitrate greater than 10 mg/L. Thus, the likelihood of coliform presence in domestic wells can be predicted from readily available environmental factors including timing and magnitude of precipitation, offering outreach opportunities and potential changes to coliform testing recommendations. [ABSTRACT FROM AUTHOR]

Corals harbor a wide diversity of bacteria associated with their mucus. These bacteria can play an important role in nutrient cycling, degradation of xenobiotics and defense against pathogens by producing antimicrobial compounds. However, the diversity of the cultivable heterotrophic bacteria, especially in the Brazilian coral species, remains poorly understood. The present work compares the diversity of cultivable bacteria isolated from the mucus and surrounding environments of four coral species present along the Brazilian coast, and explores the antibacterial activity of these bacteria. Bacteria belonging to the phyla Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes were isolated. The mucus environment presented a significantly different bacteria composition, compared to the water and sediment environments, with high abundance of Alcanivorax, Acinetobacter, Aurantimonas and Erythrobacter. No difference in the inhibition activity was found between the isolates from mucus and from the surrounding environment. Eighty-three per cent of the bacteria isolated from the mucus presented antimicrobial activity against Serratia marcescens, an opportunistic coral pathogen, suggesting that they might play a role in maintaining the health of the host. Most of the bacteria isolates that presented positive antimicrobial activity belonged to the genus Bacillus. [ABSTRACT FROM AUTHOR]

In this study, we report the effect of the commercial nanoscale zerovalent iron (nZVI) on environmental bacteria, emphasizing the importance of nZVI-bacterial membrane interaction on nZVI toxicity as well as the adaptability of bacteria to nZVI. Exposure of Pseudomonas putida F1 to 0.1, 1.0, and 5.0 g/L of nZVI caused the reduction in colony forming units (CFUs) substantially for almost 3 orders of magnitude. However, a rebound in the cell number was observed after the prolonged exposure except for 5.0 g/L nZVI at which bacterial viability was completely inhibited. Upon exposure, nZVI accumulated on and penetrated into the bacterial cell membrane. Cell membrane composition analysis revealed the conversion of the cis to trans isomer of unsaturated fatty acid upon short-term nZVI exposure, resulting in a more rigid membrane counteracting the membrane-fluidizing effect of nZVI. Several cycles of repetitive exposure of cells to 0.1 g/L nZVI induced a persistent phenotype of P. putida F1 as indicated by smaller colony morphology, a more rigid membrane, and higher tolerance to nZVI. A low interaction between nZVI particles and the surface of the nZVI-persistent phenotypic cells reduced the nZVI-induced membrane damage. This study unveils the significance of nZVI-membrane interaction on toxicity of nZVI toward bacteria. [ABSTRACT FROM AUTHOR]

In most environments, microorganisms evolve in a sessile mode of growth, designated as biofilm, which is characterized by cells embedded in a self-produced extracellular matrix. Although a biofilm is commonly described as a 'cozy house' where resident bacteria are protected from aggression, bacteria are able to break their biofilm bonds and escape to colonize new environments. This regulated process is observed in a wide variety of species; it is referred to as biofilm dispersal, and is triggered in response to various environmental and biological signals. The first part of this review reports the main regulatory mechanisms and effectors involved in biofilm dispersal. There is some evidence that dispersal is a necessary step between the persistence of bacteria inside biofilm and their dissemination. In the second part, an overview of the main methods used so far to study the dispersal process and to harvest dispersed bacteria was provided. Then focus was on the properties of the biofilm-dispersed bacteria and the fundamental role of the dispersal process in pathogen dissemination within a host organism. In light of the current body of knowledge, it was suggested that dispersal acts as a potent means of disseminating bacteria with enhanced colonization properties in the surrounding environment. [ABSTRACT FROM AUTHOR]

Bacteria and fungi are important mediators of biogeochemical processes and play essential roles in the establishment of plant communities, which makes knowledge about their recovery after extreme disturbances valuable for understanding ecosystem development. However, broad ecological differences between bacterial and fungal organisms, such as growth rates, stress tolerance, and substrate utilization, suggest they could follow distinct trajectories and show contrasting dynamics during recovery. In this study, we analyzed both the intra-annual variability and decade-scale recovery of bacterial and fungal communities in a chronosequence of reclaimed mined soils using next-generation sequencing to quantify their abundance, richness, β-diversity, taxonomic composition, and cooccurrence network properties. Bacterial communities shifted gradually, with overlapping β-diversity patterns across chronosequence ages, while shifts in fungal communities were more distinct among different ages. In addition, the magnitude of intra-annual variability in bacterial β-diversity was comparable to the changes across decades of chronosequence age, while fungal communities changed minimally across months. Finally, the complexity of bacterial cooccurrence networks increased with chronosequence age, while fungal networks did not show clear age-related trends. We hypothesize that these contrasting dynamics of bacteria and fungi in the chronosequence result from (i) higher growth rates for bacteria, leading to higher intra-annual variability; (ii) higher tolerance to environmental changes for fungi; and (iii) stronger influence of vegetation on fungal communities. IMPORTANCE Both bacteria and fungi play essential roles in ecosystem functions, and information about their recovery after extreme disturbances is important for understanding whole-ecosystem development. Given their many differences in phenotype, phylogeny, and life history, a comparison of different bacterial and fungal recovery patterns improves the understanding of how different components of the soil microbiota respond to ecosystem recovery. In this study, we highlight key differences between soil bacteria and fungi during the restoration of reclaimed mine soils in the form of long-term diversity patterns, intra-annual variability, and potential interaction networks. Cooccurrence networks revealed increasingly complex bacterial community interactions during recovery, in contrast to much simpler and more isolated fungal network patterns. This study compares bacterial and fungal cooccurrence networks and reveals cooccurrences persisting through successional ages. [ABSTRACT FROM AUTHOR]

Bacteria have been actively regulating cycles of various elements in the environment. To explore the potential bacterial role in gold biogeochemical cycling, this study analyzed the bacterial diversity of mine rock (MR) and surface soil (SS) samples from Linglong gold mine using 16S rRNA gene clone library analysis and cultivation method. From MR, 24 operational taxonomic units (OTUs) were identified from MR, covering 3 phyla and 18 genera. Meanwhile, 24 OTUs were identified from SS, including 4 phyla and 18 genera. Compared with 16S rRNA gene clone library analysis, 28 aerobic and 34 anaerobic isolates were obtained, whereas 26 aerobic and 71 anaerobic strains were isolated from SS. The cultivable bacteria were affiliated with Firmicutes, Proteobacteria and Actinobacteria phyla, and dominated by Firmicutes. These results underscore the high level of bacterial diversity in the gold mine. Our study provides information on the microbial diversity in Linglong gold mine and sheds light on the existence and potential function of bacteria in the gold biogeochemical cycling. [ABSTRACT FROM PUBLISHER]

To survive, Escherichia coli must be able to survive in rapidly changing environmental conditions including changes in temperature and osmolarity. We have studied the role of the inner membrane protein YhiM in changing environmental conditions. Our data indicate that YhiM is required for normal growth at 37 and 41 °C but not 21 °C. YhiM-deficient cells grown at high temperatures spend more time in lag phase and stop growing at lower cell densities in comparison with their wild-type counterparts. They also have growth defects in low NaCl medium at 37 °C and do not grow at all at 41 °C. The effects of low NaCl can be rescued by addition of KCl or sucrose to the low salt medium. Finally, YhiM-deficient cells fail to grow in dilute medium at 41 °C. These data suggest that YhiM may be important in protecting the cells from changes in temperature and osmolarity. [ABSTRACT FROM AUTHOR]

In the Caribbean, gorgonian corals dominate many coral reefs, while scleractinian coral cover has declined. Gorgonian corals deal with stressors such as lesions caused by wave action, predation, or human activities. In June 2012, artificial wounds were inflicted on branches of the gorgonians Eunicea flexuosa and Pseudoplexaura porosa found at 3-5 m depth on a patch reef (20°52′5.23″N, 86°51′58.92″W) near Puerto Morelos, Mexico. Following healing, injured and uninjured branches were collected to determine the effect of lesions on gorgonian biochemistry, symbiosis, microbiome, and immune response. Lesion recovery in E. flexuosa took twice as long as in P. porosa. In both species, tissues at and surrounding the lesions contained significantly higher sclerite content per dry weight but lower protein per surface area. In and around the lesion area, the density of symbiotic dinoflagellates, Symbiodinium spp., was lower than in uninjured branches, although Symbiodinium photochemical efficiency in tissues surrounding the lesion was not affected. The gorgonian species differed in their bacterial microbiome, but the overall bacterial community and dominant bacterial taxa did not differ between injured and uninjured branches, although the prevalence of some less common bacterial groups did vary. The two species exhibited distinct immune responses, whereby different components of the melanization cascade were activated, and exochitinase was mobilized only in E. flexuosa. While the gorgonian species differed in their lesion recovery response, both healed without signs of disease or colonization by fouling organisms. The capacity to recover successfully from injuries may partly explain why gorgonian corals dominate Caribbean coral reefs. [ABSTRACT FROM AUTHOR]

Proteus spp. bacteria were first described in 1885 by Gustav Hauser, who had revealed their feature of intensive swarming growth. Currently, the genus is divided into Proteus mirabilis, Proteus vulgaris, Proteus penneri, Proteus hauseri, and three unnamed genomospecies 4, 5, and 6 and consists of 80 O-antigenic serogroups. The bacteria are known to be human opportunistic pathogens, isolated from urine, wounds, and other clinical sources. It is postulated that intestines are a reservoir of these proteolytic organisms. Many wild and domestic animals may be hosts of Proteus spp. bacteria, which are commonly known to play a role of parasites or commensals. However, interesting examples of their symbiotic relationships with higher organisms have also been described. Proteus spp. bacteria present in soil or water habitats are often regarded as indicators of fecal pollution, posing a threat of poisoning when the contaminated water or seafood is consumed. The health risk may also be connected with drug-resistant strains sourcing from intestines. Positive aspects of the bacteria presence in water and soil are connected with exceptional features displayed by autochthonic Proteus spp. strains detected in these environments. These rods acquire various metabolic abilities allowing their adaptation to different environmental conditions, such as high concentrations of heavy metals or toxic substances, which may be exploited as sources of energy and nutrition by the bacteria. The Proteus spp. abilities to tolerate or utilize polluting compounds as well as promote plant growth provide a possibility of employing these microorganisms in bioremediation and environmental protection. [ABSTRACT FROM AUTHOR]

Slightly acidic electrolyzed water (SAEW) spray has been considered as a novel approach for airborne bacteria reduction in animal housing. This study aimed to optimize the operating parameters of SAEW spray based on the size distribution of sprayed aerosols, the available chlorine travelling loss in sprayed aerosols, and the reduction efficiency of airborne culturable bacteria (CB). The optimized operating parameters were the nozzle orifice diameter and the spray pressure. The size distribution characteristics of sprayed SAEW aerosols under different operating parameters were quantified. The pH and available chlorine concentrations of the original SAEW solution and the SAEW aerosols collected at 0 m, 0.25 m, 0.50 m, 0.75 m, and 1.00 m from the spray nozzle head were analyzed. A bioaerosol nebulizing generator was used to simulate animal housing environment in an environmentally-controlled chamber. Six SAEW spray trials under different operating parameters were conducted at a spray dosage of 80 mL/m2 in the chamber. Airborne CB concentrations before and after spray were measured to investigate the reduction efficiency of airborne CB. Dv(50), the volume-based diameter below which 50% of the particle being present, increased with the nozzle orifice diameter and decreased with the spray pressure. The travelling loss of available chlorine in the sprayed SAEW aerosols was greatly dependent on Dv(50). SAEW spray with medium size sprayed aerosols (Dv(50) = 86.62 μm, 67.94 μm, and 54.53 μm) showed significantly higher airborne CB reduction efficiencies than large (Dv(50)=121.80 μm and 96.00 μm) or small size aerosols (Dv(50) = 42.57 μm). The spray operating parameters that provide medium size sprayed aerosols (Dv(50) ~ 60-90 μm) are recommended for SAEW spray in animal housing. [ABSTRACT FROM AUTHOR]

Droplet microfluidics has rapidly emerged as one of the key technologies opening up new experimental possibilities in microbiology. The ability to generate, manipulate and monitor droplets carrying single cells or small populations of bacteria in a highly parallel and high throughput manner creates new approaches for solving problems in diagnostics and for research on bacterial evolution. This review presents applications of droplet microfluidics in various fields of microbiology: i) detection and identification of pathogens, ii) antibiotic susceptibility testing, iii) studies of microbial physiology and iv) biotechnological selection and improvement of strains. We also list the challenges in the dynamically developing field and new potential uses of droplets in microbiology. [ABSTRACT FROM AUTHOR]

Shooting ranges represent about 10% of polluted sites in Switzerland. This pollution, mainly consisting of lead (Pb) and antimony (Sb), can spread into the local groundwater, wildlife and plants. In this study, shooting range stop butt soils (elevated soil mount behind the target) of three sites (Versoix, Cartigny and Nyon, Western Switzerland) were investigated for metal contamination and culturable lead-resistant bacteria in contaminated soils. The inductively coupled plasma mass spectrometry analysis of surface stop butt soils (0–5 cm) indicated high metal concentrations especially for Pb and Sb, e.g., the Pb concentration ranging from 61,135 to 395,651, 23,821 to 201,268 and 120 to 27,517 mg kg−1in the soil from the sites of Versoix, Cartigny and Nyon, respectively. Molecular analysis of 16S rRNA gene demonstrates the presence of bacteria from diverse classes: Flavobacteriia, α-Proteobacteria, γ-Proteobacteria, Actinobacteria and Bacilli that exhibited high Pb minimum inhibitory concentration value from 1,036 to 2,694 mg kg−1. The isolated strains could be the subject of further studies to evaluate their role in bioremediation of lead-contaminated soil. [ABSTRACT FROM AUTHOR]

Biological treatment of sulphate-rich wastewaters employing dissimilatory sulphate reducing bacteria as remedial agents is an attractive technique and has gained importance in the last few years. Industrial effluents enriched with sulphates are generally deficient in electron donors. And thus cannot be treated biologically without supplementation of carbon through an external source. For scalable operations, however, the carbon source must not be expensive. In this context, present study reports the efficiency of biological sulphate reduction using sugarcane bagasse as a cost-effective carbon source. An average 0.00391 ± 0.001 gL day (3.91 mgL day) sulphate reduction was observed reaching maximally to 0.00466 ± 0.001 gL day (4.66 mgL day) while employing Desulfovibrio fructosovorans-HAQ2 and Desulfovibrio piger-HAQ6 in a 60-day trial of anaerobic incubation using sugarcane bagasse as growth substrate. These findings will be helpful in developing economical bioremediation processes tending to operate for a longer period of time to reduce sulphate contents of contaminated waters. [ABSTRACT FROM AUTHOR]

The study of structures and properties of bacterial spores is important to understanding spore formation and biological responses to environmental stresses. While significant progress has been made over the years in elucidating the multilayer architecture of spores, the mechanical properties of the spore interior are not known. Here, we present a thermal atomic force microscopy (AFM) study of the nanomechanical properties of internal structures of Bacillus anthracis spores. We developed a nanosurgical sectioning method in which a stiff diamond AFM tip was used to cut an individual spore, exposing its internal structure, and a soft AFM tip was used to image and characterize the spore interior on the nanometer scale. We observed that the elastic modulus and adhesion force, including their thermal responses at elevated temperatures, varied significantly in different regions of the spore section. Our AFM images indicated that the peptidoglycan (PG) cortex of Bacillus anthracis spores consisted of rod-like nanometer-sized structures that are oriented in the direction perpendicular to the spore surface. Our findings may shed light on the spore architecture and properties. [ABSTRACT FROM AUTHOR]

The conversion of grassland to oil palm is expected to increase throughout tropical regions where oil palm grows. Given the extent of land use change, there are concerns associated with impacts on ecosystem function and nutrient cycling. For this work, soil samples were collected in Papua New Guinea from 15 sites with oil palm (planted on grassland) and adjacent remnant grassland. Using DNA-based approaches, bacterial and fungal community composition was assessed in each sample, along with abundance of genes involved in key nitrogen cycling steps: nitrification (bacterial and archaeal amoA genes), nitrite reduction ( nirS gene), and nitrous oxide reduction ( nosZ gene). Across all microbial properties measured, variation among sites was greater than variation due to land use change. This was driven by among-site variation in soil physicochemical properties, particularly total soil organic carbon content and δ 13 C, electrical conductivity, exchangeable calcium, potassium and magnesium content, and extractable phosphorus content. The results suggest that in this environment, routinely measured soil properties such as soil pH, organic carbon, and exchangeable cation contents may serve as indicators for the effects of land use and management on soil microbial community composition and functioning. [ABSTRACT FROM AUTHOR]

Nowadays, the problems of rejections constitute an increasingly important danger in the receiving mediums. Indeed, water is increasingly affected by minerals and organic matters and even by the micro-organisms of which some are pathogenic and thus dangerous for the ecosystem. In this context, the present study was conducted to investigate the microbiological pollution of water of the lake Mellah, located in the national park of El Kala, North-eastern Algerian. This lake is a depression which communicates with the sea and flowing the domestic effluents of the neighbouring localities. The physicochemical parameters (Temperature, pH; Eh; Electric conductivity; Salinity, Turbidity, and O) and bacteriological (coliformes total, coliformes thermo tolerant, streptococci) were followed during the year 2011 with a seasonal frequency (February, May, August, November). Seventeen (17) sites of three different habitats were investigated; the waste-water treatment plant (WWTP), Wadis and their upstream to the estuary and the lake. The follow-up of analysis of the physicochemical and biological parameters in the various points of observation was the object of a graphs data processing and statistics (ACP) to determine the bacteriological degree of pollution. Results showed a contamination by the fecal matter with a gradient decreasing from the upstream of the discharge system towards the downstream. Compared to rain waters, microbiological pollution in the lake was selective in time. The CT and the CTT decreased in dry season where the ambient conditions (salinity, pH and temperature) become unfavorable, putting the factor salinity concerned to degrade the water pollution. [ABSTRACT FROM AUTHOR]

We report on our recent efforts towards identifying bacteria in environmental samples by means of Raman spectroscopy. We established a database of Raman spectra from bacteria submitted to various environmental conditions. This dataset was used to verify that Raman typing is possible from measurements performed in non-ideal conditions. Starting from the same dataset, we then varied the phenotype and matrix diversity content included in the reference library used to train the statistical model. The results show that it is possible to obtain models with an extended coverage of spectral variabilities, compared to environment-specific models trained on spectra from a restricted set of conditions. Broad coverage models are desirable for environmental samples since the exact conditions of the bacteria cannot be controlled. [ABSTRACT FROM AUTHOR]

In this study we assess global biogeography and correlation patterns among three components of microbial life: bacteria, microeukaryotes, and T4-like myoviruses. In addition to environmental and biogeographical considerations, we have focused our study on samples from high-latitude pristine lakes from both poles, since these simple island-like ecosystems represent ideal ecological models to probe the relationships among microbial components and with the environment. Bacterial assemblages were dominated by members of the same groups found to dominate freshwater ecosystems elsewhere, and microeukaryotic assemblages were dominated by photosynthetic microalgae. Despite inter-lake variations in community composition, the overall percentages of OTUs shared among sites was remarkable, indicating that many microeukaryotic, bacterial, and viral OTUs are globally-distributed. We observed an intriguing negative correlation between bacterial and microeukaryotic diversity values. Notably, our analyses show significant global correlations between bacterial and microeukaryotic community structures, and between the phylogenetic compositions of bacterial and T4-like virus assemblages. Overall, environmental filtering emerged as the main factor driving community structures. [ABSTRACT FROM AUTHOR]

Understanding the factors that constrain or promote symbiotic microbial communities gives a clearer picture of the niches that can be occupied by a host organism. Many insects harbor symbiotic microbes that can alter various aspects of insect behavior and biology including digestion, sex determination, and pathogen defense. Habitat diversity has a major influence on insect and microbial diversity within an environment. In the current study, we assessed how habitat biodiversity affects the bacterial species richness within the gastrointestinal tract of insects. We measured species abundance of plants and insects present in three replicated habitats (prairie, pasture, and maize fields) that inherently represent a continuum of biological diversities. Gut bacterial symbiont diversity of the crickets Grtjllus Pennsylvaniais Burmeister and Allonernohius sp. (Orthoptera: Gryllidae) were described using terminal restriction fragment length polymorphism analysis of rRNA genes. The resulting data show that gut bacterial diversity of both cricket species is positively correlated with biodiversity according to habitat type. This demonstrates that microbial diversity within insect gastrointestinal tracts, and possibly their functions within these insects, is tied to the biodiversity within the habitats where insects live. These results have important implications as to how reductions in habitat biodiversity may affect the ecological functions and services that the remaining species can perform. [ABSTRACT FROM AUTHOR]

Indoor air in homes contains a variety of organic agents such as bacteria, endotoxin and fungi. Epidemiological studies have shown links between these components and respiratory problems and the development of allergies. Twenty-eight dwellings located in the Greater Copenhagen area in Denmark were investigated in this study. Temperature, relative humidity and air exchange rate were measured. Dwelling characteristics including floor area, volume of the living room, floor material, year of construction of buildings and floor level were collected. The microbial exposure was measured by quantifying fungi, bacteria and endotoxin concentration in airborne dust collected by Electrostatic Dust fall Collectors (EDCs). The Total Inflammatory Potential (TIP) of the dust was also measured. Significantly higher concentrations of fungi were found in dwellings with high relative humidity (p = 0.03), larger room volume (p = 0.03) and in dwellings located on the second floor or higher (p = 0.02). Small floor area per person and low air exchange rate were significantly associated with increased concentrations of bacteria (both p < 0.01). Spring season (p = 0.01), buildings constructed before the 20th century (p = 0.09) and wooden floor (p = 0.03) were associated with high TIP. In conclusion, people living in smaller dwellings or in dwellings on upper floors are at higher risk of microbial exposure. While TIP was affected by some dwelling characteristics, it was mainly influenced by season. [ABSTRACT FROM AUTHOR]

Global warming due to the emission of carbon dioxide (CO2) gas, by the anthropogenic sources is a great threat to the environment. A part of this gas is absorbed by soil bacteria as well as aquatic bacteria and it is converted into insoluble calcium carbonate (CaCO3) or calcite. Increased calcite concentration in water and agricultural land creates many problems to the human. In this investigation, an attempt has been made to carry out some experiments to isolate some bacteria from cow dung, which have both calcite solubilization and urease activities. Isolated bacteria solubilize calcite due to the secretion of citric acid, oxalic acid and sanazine pigment. All bacterial isolates were identified by 16S rRNA gene sequencing and the phylogenetic relationship among them was also studied using MEGA 6 software. [ABSTRACT FROM AUTHOR]

Increasing textile industries in the last few decade has resulted in the discharge of very large quantities of complex chemical dye to the water system. This has affected the ecological and biological balance causing immense destruction to the nature. In this work, azo dye (Orange G 16) degradation studies by Pseudoalteramonas sp. were investigated. From the experiments, Pseudoalteromonas species degraded the Orange G 16 azo dye at a short time span within 3 h. The assay time for azoreductase activity was standardized, and maximum activity was observed at 24th. The protein concentration was estimated at three different stages of dye degradation. First stage is before addition of dye, second stage is 3 h after addition of the dye during which the dye had completely decolourized, and the third stage is 18 h after the addition of dye. From the study, it was observed that protein concentration was higher in the 24-h sample which has been induced with Orange G 16 azo dye having a concentration of 0.92 mg/ml. While comparing the total activity and specific activity of the enzyme for three samples, it was observed that the activity was higher at the 24th s and then subsided gradually. Thus, Pseudoalteromonas sp. is found to be efficient in degrading azo dyes because of its potential to degrade the dyes rapidly which also has a higher azoreductase activity. [ABSTRACT FROM AUTHOR]

Research on how bacteria adapt to changing environments underlies the contemporary biological understanding of signal transduction (ST), and ST provides the foundation of the information-processing approach that is the hallmark of the 'cognitive revolution,' which began in the mid-20th century. Yet cognitive scientists largely remain oblivious to research into microbial behavior that might provide insights into problems in their own domains, while microbiologists seem equally unaware of the potential importance of their work to understanding cognitive capacities in multicellular organisms, including vertebrates. Evidence in bacteria for capacities encompassed by the concept of cognition is reviewed. Parallels exist not only at the heuristic level of functional analogue, but also at the level of molecular mechanism, evolution and ecology, which is where fruitful cross-fertilization among disciplines might be found. [ABSTRACT FROM AUTHOR]

Bacterial activity in the near-field environment of radioactive waste disposal facilities in deep argillaceous rocks is currently under investigation. Bacterial development could be enhanced by the availability of low-molecular-weight organic acids (LMWOA) dissolved in the pore water of clayey rocks. This study firstly aimed at isolating and characterizing the LMWOA of the Toarcian argillite from the Tournemire Underground Research Laboratory (France, Aveyron). It also aimed at assessing the disturbing effects that could be induced by a disposal facility on the type and release of LMWOA (exposure to oxygen, alkaline pH, temperature increase). Under the experimental conditions investigated at 60 °C, the mean dissolved organic carbon (DOC) is about 15 mg L −1 with a LMWOA proportion of 35 %. The main LMWOA are composed of formate, fumarate, propionate, acetate, and lactate. DOC is mainly influenced by both temperature and pH increases, whereas the LMWOA type nature and release are more specifically affected by the exposure to oxygen. [ABSTRACT FROM AUTHOR]

To survive and adapt to environmental changes, bacteria commonly use two-component signaling systems. Minimally, these pathways use histidine kinases (HKs) to detect environmental signals, harnessing these to control phosphorylation levels of receiver (REC) domains of downstream response regulators that convert this signal into physiological responses. Studies of several prototypical REC domains suggest that phosphorylation shifts these proteins between inactive and active structures that are globally similar and well-folded. However, it is unclear how globally these findings hold within REC domains in general, particularly when they are considered within full-length proteins. Here, we present EL_LovR, a full-length REC-only protein that is phosphorylated in response to blue light in the marine α-proteobacterium, Erythrobacter litoralis HTCC2594. Notably, EL_LovR is similar to comparable REC-only proteins used in bacterial general stress responses, where genetic evidence suggests that their potent phosphatase activity is important to shut off such systems. Size exclusion chromatography, light scattering, and solution NMR experiments show that EL_LovR is monomeric and unfolded in solution under conditions routinely used for other REC structure determinations. Addition of Mg2+ and phosphorylation induce progressively greater degrees of tertiary structure stabilization, with the solution structure of the fully activated EL_LovR adopting the canonical receiver domain fold. Parallel functional assays show that EL_LovR has a fast dephosphorylation rate, consistent with its proposed function as a phosphate sink that depletes the HK phosphoryl group, promoting the phosphatase activity of this enzyme. Our findings demonstrate that EL_LovR undergoes substantial ligand-dependent conformational changes that have not been reported for other RRs, expanding the scope of conformational changes and regulation used by REC domains, critical components of bacterial signaling systems. [ABSTRACT FROM AUTHOR]

Background: Members of Comamonas testosteroni are environmental microorganisms that are usually found in polluted environment samples. They utilize steroids and aromatic compounds but rarely sugars, and show resistance to multiple heavy metals and multiple drugs. However, comprehensive genomic analysis among the C. testosteroni strains is lacked. Results: To understand the genome bases of the features of C. testosteroni, we sequenced 10 strains of this species and analyzed them together with other related published genome sequences. The results revealed that: 1) the strains of C. testosteroni have genome sizes ranging from 5.1 to 6.0 Mb and G + C contents ranging from 61.1% to 61.8%. The pan-genome contained 10,165 gene families and the core genome contained 3,599 gene families. Heap's law analysis indicated that the pan-genome of C. testosteroni may be open (a = 0.639); 2) by analyzing 31 phenotypes of 11 available C. testosteroni strains, 99.4% of the genotypes (putative genes) were found to be correlated to the phenotypes, indicating a high correlation between phenotypes and genotypes; 3) gene clusters for nitrate reduction, steroids degradation and metal and multi-drug resistance were found and were highly conserved among all the genomes of this species; 4) the genome similarity of C. testosteroni may be related to the geographical distances. Conclusions: This work provided an overview on the genomes of C. testosteroni and new genome resources that would accelerate the further investigations of this species. Importantly, this work focused on the analysis of potential genetic determinants for the typical characters and found high correlation between the phenotypes and their corresponding genotypes. [ABSTRACT FROM AUTHOR]

An introduction is presented in which the editor discusses various reports within the issue on topics including Combitox project which deals with developing device for surveillance of water networks using biosensors, use of environmental bacterial species, and radioisotopes.

The dominance of cyanobacterial algae in light-limited, shallow freshwater Lake Baringo is a major environmental concern in regard to Kenyan water quality and public health protection agencies. Accordingly, this study focused on determining the effect of different environmental factors on cyanobacteria dynamics in different sediment disturbance zones of the lake and in different seasons. This study also sought to bridge the knowledge gap regarding the influence of water clarity on cyanobacteria dynamics in the lake. Samples were collected from the field, stored in ice and transported to the laboratory for nutrient analyses. Cyanobacteria cultures isolated from the lake were grown under a 12:12 light/dark cycle. The frequency of dividing cells ( FDC) technique, and a fluorescence microscopy technique, was used to count growing cyanobacteria cells. Specific cyanobacteria organic carbon synthesis was significantly negatively correlated with turbidity for the southern ( r = −0.6573; P < 0.05) and central sediment disturbance zones ( r = −0.6847; P < 0.05). This study indicated that water clarity is an environmental phenomenon that facilitates the movement of cyanobacteria into the turbid areas of the lake, where their production levels are significantly high, in contrast to the clear water along the edges of the water-land interface during the wet season (April to August) and dry season (September to March). Water clarity potentially enhances cell division inhibition and multiplication, thereby positively influencing cyanobacteria dynamics in Lake Baringo. Thus, it is concluded that the cyanobacteria growth rate resulting from use of the FDC technique suggests a link with inflowing water clarity that can be used to monitor in-lake water quality, to better manage cyanobacteria blooms in Lake Baringo and in lakes and reservoirs elsewhere. [ABSTRACT FROM AUTHOR]

The sponge Petrosia ficiformis is ubiquitous in the Mediterranean Sea and Eastern Atlantic Ocean, hosting a diverse assemblage of bacteria, including, in illuminated sites, cyanobacteria. Two closely related sponge color morphs have been described, one inside caves and at their entrance (white/pink), and one on the rocky cliffs (violet). The presence of the different morphs and their ubiquity in the Mediterranean (from North-West to South-East) provides an opportunity to examine which factors mostly affect the associated microbial communities in this species: (i) presence of phototrophic symbionts or (ii) biogeography. 16S rRNA gene tag pyrosequencing data of the microbial communities revealed that Chloroflexi, Gammaproteobacteria, and Acidobacteria dominated the bacterial communities of all sponges analyzed. Chlorophyll a content, TEM observations and DNA sequence data confirmed the presence of the cyanobacterium Synechococcus feldmannii in violet and pink morphs of P. ficiformis and their absence in white color morphs. Rather than cyanobacterial symbionts (i.e., color morphs) accounting for variability in microbial symbiont communities, a biogeographic trend was observed between P. ficiformis collected in Israel and Italy. Analyses of partial 18S rRNA and mitochondrial cytochrome c oxidase subunit I (COX1) gene sequences revealed consistent genetic divergence between the violet and pink-white morphotypes of P. ficiformis. Overall, data indicated that microbial symbiont communities were more similar in genetically distinct P. ficiformis from the same location, than genetically similar P. ficiformis from distant locations. [ABSTRACT FROM AUTHOR]