Search

Systematic cold biases exist in the simulation for 2 m air temperature in the Tibetan Plateau (TP) when using regional climate models and global atmospheric general circulation models. We updated the albedo in the Weather Research and Forecasting (WRF) Model lower boundary condition using the Global LAnd Surface Satellite Moderate-Resolution Imaging Spectroradiometer albedo products and demonstrated evident improvement for cold temperature biases in the TP. It is the large overestimation of albedo in winter and spring in the WRF model that resulted in the large cold temperature biases. The overestimated albedo was caused by the simulated precipitation biases and over-parameterization of snow albedo. Furthermore, light-absorbing aerosols can result in a large reduction of albedo in snow and ice cover. The results suggest the necessity of developing snow albedo parameterization using observations in the TP, where snow cover and melting are very different from other low-elevation regions, and the influence of aerosols should be considered as well. In addition to defining snow albedo, our results show an urgent call for improving precipitation simulation in the TP.

Abstract Early cancer detection by cell-free DNA faces multiple challenges: low fraction of tumor cell-free DNA, molecular heterogeneity of cancer, and sample sizes that are not sufficient to reflect diverse patient populations. Here, we develop a cancer detection approach to address these challenges. It consists of an assay, cfMethyl-Seq, for cost-effective sequencing of the cell-free DNA methylome (with > 12-fold enrichment over whole genome bisulfite sequencing in CpG islands), and a computational method to extract methylation information and diagnose patients. Applying our approach to 408 colon, liver, lung, and stomach cancer patients and controls, at 97.9% specificity we achieve 80.7% and 74.5% sensitivity in detecting all-stage and early-stage cancer, and 89.1% and 85.0% accuracy for locating tissue-of-origin of all-stage and early-stage cancer, respectively. Our approach cost-effectively retains methylome profiles of cancer abnormalities, allowing us to learn new features and expand to other cancer types as training cohorts grow.

High concentrations of nitrous acid (HONO) have been observed in the Pearl River Delta (PRD) region of China in recent years, contributing to an elevated atmospheric oxidation capacity due to the production of OH through HONO photolysis. We investigated the budget of HONO at an urban site in Guangzhou from 27 September to 9 November 2018 using data from a comprehensive atmospheric observation campaign. During this period, measured concentrations of HONO were 0.02 to 4.43 ppbv, with an average of 0.74 ± 0.70 ppbv. An emission ratio (HONO/NOx) of 0.9 ± 0.4 % was derived from 11 fresh plumes. The primary emission rate of HONO at night was calculated to be between 0.04 ± 0.02 and 0.30 ± 0.15 ppbv h−1 based on a high-resolution NOx emission inventory. Heterogeneous conversion of NO2 on the ground surface (0.27 ± 0.13 ppbv h−1), primary emissions from vehicle exhaust (between 0.04 ± 0.02 and 0.30 ± 0.15 ppbv h−1, with a middle value of 0.16 ± 0.07 ppbv h−1), and the homogeneous reaction of NO + OH (0.14 ± 0.30 ppbv h−1) were found to be the three largest sources of HONO at night. Heterogeneous NO2 conversion on aerosol surfaces (0.03 ± 0.02 ppbv h−1) and soil emission (0.019 ± 0.009 ppbv h−1) were two other minor sources. Correlation analysis shows that NH3 and the relative humidity (RH) may have participated in the heterogeneous transformation of NO2 to HONO at night. Dry deposition (0.41 ± 0.31 ppbv h−1) was the main removal process of HONO at night, followed by dilution (0.18 ± 0.16 ppbv h−1), while HONO loss at aerosol surfaces was much slower (0.008 ± 0.006 ppbv h−1). In the daytime, the average primary emission Pemis was 0.12 ± 0.02 ppbv h−1, and the homogeneous reaction POH+NO was 0.79 ± 0.61 ppbv h−1, larger than the unknown source PUnknown (0.65 ± 0.46 ppbv h−1). Similar to previous studies, PUnknown appeared to be related to the photo-enhanced conversion of NO2. Our results show that primary emissions and the reaction of NO + OH can significantly affect HONO at a site with intensive emissions during both the daytime and nighttime. Uncertainty in parameter values assumed in the calculation of HONO sources can have a strong impact on the relative importance of HONO sources at night, and could be reduced by improving knowledge of key parameters such as the NO2 uptake coefficient. The uncertainty in the estimated direct emission can be reduced by using emission data with higher resolution and quality. Our study highlights the importance of better constraining both conventional and novel HONO sources by reducing uncertainties in their key parameters for advancing our knowledge of this important source of atmospheric OH.

Single-column sea ice models are used to focus on the thermodynamic evolution of the ice. Generally, these models are forced by atmospheric reanalysis in the absence of atmospheric in situ observations. Here we assess the sea ice thickness simulated by a single-column model (ICEPACK) with in situ observations obtained off Zhongshan Station for the austral winter of 2016. In the reanalysis, the surface air temperature is about 1 ∘C lower, the total precipitation is about 2 mm d−1 greater, and the surface wind speed is about 2 m s−1 higher compared to the in situ observations. We designed sensitivity experiments to evaluate the simulation bias in sea ice thickness due to the uncertainty in the individual atmospheric forcing variables. Our results show that the unrealistic precipitation in the reanalysis leads to a bias of 14.5 cm in sea ice thickness and 17.3 cm in snow depth. In addition, our data show that increasing snow depth works to gradually inhibit the growth of sea ice associated with thermal blanketing by the snow due to changing the vertical heat flux. Conversely, given suitable conditions, the sea ice thickness may grow suddenly when the snow load gives rise to flooding and leads to snow-ice formation. However, there are still uncertainties related to the model results because superimposed ice and snowdrift are not implemented in the version of the ice model used and because snow-ice formation might be overestimated at locations with landfast sea ice.

Abstract Background There is limited and inconsistent literature examining the relationship between food worry and mental health in the context of the COVID-19 pandemic. This study examined the association between food worry and mental health among community dwelling Canadian adults during the COVID-19 pandemic. Methods Adults age 16 years and older completed an anonymous online questionnaire between April 1, 2020 and November 30 2020. Measures of pre-pandemic and current food worry, depression (PHQ-2), anxiety (GAD-2), and sociodemographic variables were included. Multivariable logistic regression models were used to determine the association between food worry and symptoms of depression and anxiety. Results In total, 1605 participants were included in analyses. Worry about affording food was reported by 320 (14.78%) participants. In models adjusting for sociodemographic covariates, compared with people without food worry, participants who had food worry were 2.07 times more likely to report anxiety symptoms (aOR 2.07, 95% CI: 1.43 – 2.98, p

Abstract Background Hepatocellular carcinoma (HCC) is a common primary liver cancer with poor overall survival. We hypothesized that there are HCC-associated cell-types that impact patient survival. Methods We combined liver single nucleus (snRNA-seq), single cell (scRNA-seq), and bulk RNA-sequencing (RNA-seq) data to search for cell-type differences in HCC. To first identify cell-types in HCC, adjacent non-tumor tissue, and normal liver, we integrated single-cell level data from a healthy liver cohort (n = 9 non-HCC samples) collected in the Strasbourg University Hospital; an HCC cohort (n = 1 non-HCC, n = 14 HCC-tumor, and n = 14 adjacent non-tumor samples) collected in the Singapore General Hospital and National University; and another HCC cohort (n = 3 HCC-tumor and n = 3 adjacent non-tumor samples) collected in the Dumont-UCLA Liver Cancer Center. We then leveraged these single cell level data to decompose the cell-types in liver bulk RNA-seq data from HCC patients’ tumor (n = 361) and adjacent non-tumor tissue (n = 49) from the Cancer Genome Atlas (TCGA) multi-center cohort. For replication, we decomposed 221 HCC and 209 adjacent non-tumor liver microarray samples from the Liver Cancer Institute (LCI) cohort collected by the Liver Cancer Institute and Zhongshan Hospital of Fudan University. Results We discovered a tumor-associated proliferative cell-type, Prol (80.4% tumor cells), enriched for cell cycle and mitosis genes. In the liver bulk tissue from the TCGA cohort, the proportion of the Prol cell-type is significantly increased in HCC and associates with a worse overall survival. Independently from our decomposition analysis, we reciprocally show that Prol nuclei/cells significantly over-express both tumor-elevated and survival-decreasing genes obtained from the bulk tissue. Our replication analysis in the LCI cohort confirmed that an increased estimated proportion of the Prol cell-type in HCC is a significant marker for a shorter overall survival. Finally, we show that somatic mutations in the tumor suppressor genes TP53 and RB1 are linked to an increase of the Prol cell-type in HCC. Conclusions By integrating liver single cell, single nucleus, and bulk expression data from multiple cohorts we identified a proliferating cell-type (Prol) enriched in HCC tumors, associated with a decreased overall survival, and linked to TP53 and RB1 somatic mutations.

Excitons in atomically thin crystals couple strongly with light. Here, the authors observe lattice polaritons in a tunable open optical cavity at room temperature, with an imprinted photonic lattice strongly coupled to excitons in a WS2 monolayer.

Extracellular vesicles (EVs) are present in circulation at relatively early stages of disease, providing potential opportunities for early cancer diagnosis. Here, the authors report a covalent chemistry-based hepatocellular carcinoma (HCC)-specific EV purification system for early detection of HCC by performing digital scoring on the purified EVs.

Excitons control the optical properties of transition metal dichalcogenide monolayers. Here, the authors measure the exciton fine structure of MoS2 and MoSe2 monolayers encapsulated in hBN in magnetic fields up to 30 T, and observe a brightening of the spin-forbidden dark excitons in MoS2.

The auroral oval boundary represents an important physical process with implications for the ionosphere and magnetosphere. An automatic auroral oval boundary prediction method based on deep learning in this paper is applied to study the variation of the auroral oval boundary associated with different space physical parameters. We construct an auroral oval boundary dataset to train our proposed model, which consists of 184 416 auroral oval boundary points extracted from 3842 images captured by the Ultraviolet Imager (UVI) of the Polar satellite and its corresponding 18 space physical parameters selected from the OMNI dataset from December 1996 to March 1997. Furthermore, several statistical experiments and correlation analysis experiments are performed based on our dataset to explore the relationship between space physical parameters and the location of the auroral oval boundary. The experiment results show that the prediction model based on the deep learning method can estimate the auroral oval boundary efficiently, and different space physical parameters have different effects on the auroral oval boundary, especially the interplanetary magnetic field (IMF), geomagnetic indexes, and solar wind parameters.

Sea ice volume export through the Fram Strait plays an important role in the Arctic freshwater and energy redistribution. The combined model and satellite sea ice thickness (CMST) data set assimilates CryoSat-2 and soil moisture and ocean salinity (SMOS) thickness products together with satellite sea ice concentration. The CMST data set closes the gap of stand-alone satellite-derived sea ice thickness in summer and therefore allows us to estimate sea ice volume export during the melt season. In this study, we first validate the CMST data set using field observations, and then we estimate the continuous seasonal and interannual variations in Arctic sea ice volume flux through the Fram Strait from September 2010 to December 2016. The results show that seasonal and interannual sea ice volume export vary from about -240(±40) to -970(±60) km3 and -1970(±290) to -2490(±280) km3, respectively. The sea ice volume export reaches its maximum in spring and about one-third of the yearly total volume export occurs in the melt season. The minimum monthly sea ice export is −11 km3 in August 2015, and the maximum (−442 km3) appears in March 2011. The seasonal relative frequencies of sea ice thickness and drift suggest that the Fram Strait outlet in summer is dominated by sea ice that is thicker than 2 m with relatively slow seasonal mean drift of about 3 km d−1.

SUMMARY: Currently, the mass culling of infected poultry as well as those that may have had contact with them is an essential part of prevention and disease control strategy, amidst the growing concerns over the avian influenza virus (AIV) spreading nationwide; however, it is largely dependent on effective biosecurity measures, including disinfection. Although many disinfectants are commercially available for veterinary use, information on the virucidal efficacy of individual active components in disinfectants is limited, since most disinfectants are complex formulations of active substances. This study aimed to evaluate the virucidal efficacy of individual active components in commercial disinfectants. Seven representative active substances in commercial disinfectants used against AIV in South Korea during the year 2020, namely potassium peroxymonosulfate (PPMS), sodium dichloroisocyanurate (NaDCC), malic acid (MA), citric acid (CA), glutaraldehyde (GLT), benzalkonium chloride (BZK), and didecyldimethylammonium chloride (DDAC), were tested to confirm their individual virucidal efficacy against H9N2 low pathogenic avian influenza virus. The specific selection of active substances and their test concentrations was done based on the formulation of 202 disinfectants approved by Animal and Plant Quarantine Agency as being effective against AIV. Minimal virucidal concentrations are as follows: for PPMS, 0.2%; for NaDCC, 0.1%; for MA, 0.5%; for CA, 0.4%; for GLT, 0.01%; for BZK, 0.4%; and for DDAC, 0.2%. The current study not only highlighted the virucidal efficacy of these active substances against AIV but also indicated its impact on the biosecurity measures, particularly for selection of a disinfectant and its proper application in poultry industry.

Nuclear spins in diamond have applications in quantum technologies and NMR methods but their performance can be limited by relaxation processes that are difficult to characterise. Ajoy et al. develop a T 1 noise spectroscopy method to identify the dominant relaxation channel and propose a mitigation strategy.

This work is dedicated to the memory of our friend, colleague and teacher Professor Ming-Li Zhang, a recognized expert in botany in such groups as Fabaceae, Polygonaceae, Tamaricaceae, Nitrariaceae. He made a great contribution to the study of the Flora of China and Central Asia. He used not only the traditional methods of research, but also showed great interest in cladistics, DELTA programs and other methods of systematics throughout his research. Professor Ming-Li Zhang trained many excellent students. In addition, we attach a list of published papers related to his research.

Gaofen-3 is the first C-band fully polarimetric SAR satellite in China, which is widely used in various fields such as ocean monitoring, disaster reduction and so on. In this paper, a new satellite constellation is proposed based on the orbit of Gaofen-3 satellite. The constellation includes Gaofen-3 and other two duplicates. It is able to do repeat-pass interferometry, repeat-pass differential interferometry, along-track interferometry and stereo measurement. With these abilities, it can generate the earth DEM without ground control points and have better performance in moving target identification and monitoring. The performance and the system requirements are analysed, which provides a good reference for the design of spaceborne SAR constellation.

Abstract Background Helicoverpa armigera and Helicoverpa zea are major caterpillar pests of Old and New World agriculture, respectively. Both, particularly H. armigera, are extremely polyphagous, and H. armigera has developed resistance to many insecticides. Here we use comparative genomics, transcriptomics and resequencing to elucidate the genetic basis for their properties as pests. Results We find that, prior to their divergence about 1.5 Mya, the H. armigera/H. zea lineage had accumulated up to more than 100 more members of specific detoxification and digestion gene families and more than 100 extra gustatory receptor genes, compared to other lepidopterans with narrower host ranges. The two genomes remain very similar in gene content and order, but H. armigera is more polymorphic overall, and H. zea has lost several detoxification genes, as well as about 50 gustatory receptor genes. It also lacks certain genes and alleles conferring insecticide resistance found in H. armigera. Non-synonymous sites in the expanded gene families above are rapidly diverging, both between paralogues and between orthologues in the two species. Whole genome transcriptomic analyses of H. armigera larvae show widely divergent responses to different host plants, including responses among many of the duplicated detoxification and digestion genes. Conclusions The extreme polyphagy of the two heliothines is associated with extensive amplification and neofunctionalisation of genes involved in host finding and use, coupled with versatile transcriptional responses on different hosts. H. armigera’s invasion of the Americas in recent years means that hybridisation could generate populations that are both locally adapted and insecticide resistant.

Humans have significantly altered the redistribution of water in intensively managed hydrologic systems, shifting the spatiotemporal patterns of surface water. Evaluating water availability requires integration of hydrologic processes and associated human influences. In this study, we summarize the development and evaluation of an extensible hydrologic model that explicitly integrates water rights to spatially distribute irrigation waters in a semi-arid agricultural region in the western US, using the Envision integrated modeling platform. The model captures both human and biophysical systems, particularly the diversion of water from the Boise River, which is the main water source that supports irrigated agriculture in this region. In agricultural areas, water demand is estimated as a function of crop type and local environmental conditions. Surface water to meet crop demand is diverted from the stream reaches, constrained by the amount of water available in the stream, the water-rights-appropriated amount, and the priority dates associated with particular places of use. Results, measured by flow rates at gaged stream and canal locations within the study area, suggest that the impacts of irrigation activities on the magnitude and timing of flows through this intensively managed system are well captured. The multi-year averaged diverted water from the Boise River matches observations well, reflecting the appropriation of water according to the water rights database. Because of the spatially explicit implementation of surface water diversion, the model can help diagnose places and times where water resources are likely insufficient to meet agricultural water demands, and inform future water management decisions.

Inhibition plays a powerful role in regulating network excitation and plasticity; however, the activity of defined interneuron types during spatial exploration remain poorly understood. Using two-photon calcium imaging, we recorded hippocampal CA1 somatostatin- and parvalbumin-expressing interneurons as mice performed a goal-directed spatial navigation task in new visual virtual reality (VR) contexts. Activity in both interneuron classes was strongly suppressed but recovered as animals learned to adapt the previously learned task to the new spatial context. Surprisingly, although there was a range of activity suppression across the population, individual somatostatin-expressing interneurons showed consistent levels of activity modulation across exposure to multiple novel environments, suggesting context-independent, stable network roles during spatial exploration. This work reveals population-level temporally dynamic interneuron activity in new environments, within which each interneuron shows stable and consistent activity modulation.

Knowledge on the microphysical properties of atmospheric aerosols is essential to better evaluate their radiative forcing. This paper presents an estimate of the real part of the refractive indices (n) and effective densities (ρeff) of chemically segregated atmospheric aerosols in Guangzhou, China. Vacuum aerodynamic diameter, chemical compositions, and light-scattering intensities of individual particles were simultaneously measured by a single-particle aerosol mass spectrometer (SPAMS) during the fall of 2012. On the basis of Mie theory, n at a wavelength of 532 nm and ρeff were estimated for 17 particle types in four categories: organics (OC), elemental carbon (EC), internally mixed EC and OC (ECOC), and Metal-rich. The results indicate the presence of spherical or nearly spherical shapes for the majority of particle types, whose partial scattering cross-section versus sizes were well fitted to Mie theoretical modeling results. While sharing n in a narrow range (1.47–1.53), majority of particle types exhibited a wide range of ρeff (0.87–1.51 g cm−3). The OC group is associated with the lowest ρeff (0.87–1.07 g cm−3), and the Metal-rich group with the highest ones (1.29–1.51 g cm−3). It is noteworthy that a specific EC type exhibits a complex scattering curve versus size due to the presence of both compact and irregularly shaped particles. Overall, the results on the detailed relationship between physical and chemical properties benefits future research on the impact of aerosols on visibility and climate.

Posthemorrhagic shock mesenteric lymph (PHSML) is a key factor in multiple organ injury following hemorrhagic shock. We investigated the role of hydrogen sulfide (H2S) in PHSML drainage in alleviating acute kidney injury (AKI) by administering D,L-propargylglycine (PPG) and sodium hydrosulfide hydrate (NaHS) to 12 specific pathogen-free male Wistar rats with PHSML drainage. A hemorrhagic shock model was established in 4 experimental groups: shock, shock+drainage, shock+drainage+PPG (45 mg/kg, 0.5 h prehemorrhage), and shock+drainage+NaHS (28 µmol/kg, 0.5 h prehemorrhage). Fluid resuscitation was performed after 1 h of hypotension, and PHMSL was drained in the last three groups for 3 h after resuscitation. Renal function and histomorphology were assessed along with levels of H2S, cystathionine-γ-lyase (CSE), Toll-like receptor 4 (TLR4), interleukin (IL)-10, IL-12, and tumor necrosis factor (TNF)-α in renal tissue. Hemorrhagic shock induced AKI with increased urea and creatinine levels in plasma and higher H2S, CSE, TLR4, IL-10, IL-12, and TNF-α levels in renal tissue. PHSML drainage significantly reduced urea, creatinine, H2S, CSE, and TNF-α but not TLR4, IL-10, or IL-12. PPG decreased creatinine, H2S, IL-10, and TNF-α levels, but this effect was reversed by NaHS administration. In conclusion, PHSML drainage alleviated AKI following hemorrhagic shock by preventing increases in H2S and H2S-mediated inflammation.