9 results on '"Aydogan HY"'
Search Results
2. NAssociation of Estrogen Receptor alpha Gene Polymorphism with Bone Mineral Density and Body Mass Index in Turkish Postmenopausal Women
- Author
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Kurt, Ozlem, Hulya Yilmaz Aydogan, Isbir, Turgay, Uyar, Mehmet, Can, Ayse, Kurt, O, Aydogan, HY, İşbir, Turgay, Uyar, M, Can, A, and Yeditepe Üniversitesi
- Abstract
… Int Soc Study Xenobiot
3. Precision Diagnosis of Maturity-Onset Diabetes of the Young with Next-Generation Sequencing: Findings from the MODY-IST Study in Adult Patients.
- Author
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Aydogan HY, Gul N, Demirci DK, Mutlu U, Gulfidan G, Arga KY, Ozder A, Camli AA, Tutuncu Y, Ozturk O, Cacina C, Darendeliler F, Poyrazoglu S, and Satman I
- Subjects
- High-Throughput Nucleotide Sequencing, Humans, Mutation, Mutation, Missense, Diabetes Mellitus, Type 2 diagnosis, Diabetes Mellitus, Type 2 genetics
- Abstract
Maturity-onset diabetes of the young (MODY) is a highly heterogeneous group of monogenic and nonautoimmune diseases. Misdiagnosis of MODY is a widespread problem and about 5% of patients with type 2 diabetes mellitus and nearly 10% with type 1 diabetes mellitus may actually have MODY. Using next-generation DNA sequencing (NGS) to facilitate accurate diagnosis of MODY, this study investigated mutations in 13 MODY genes ( HNF4A , GCK , HNF1A , PDX1 , HNF1B , NEUROD1 , KLF11 , CEL , PAX4 , INS , BLK , ABCC8 , and KCNJ11 ). In addition, we comprehensively investigated the clinical phenotypic effects of the genetic variations identified. Fifty-one adult patients with suspected MODY and 64 healthy controls participated in the study. We identified 7 novel and 10 known missense mutations localized in PDX1 , HNF1B , KLF11 , CEL , BLK , and ABCC8 genes in 29.4% of the patient sample. Importantly, we report several mutations that were classified as "deleterious" as well as those predicted as "benign." Notably, the ABCC8 p.R1103Q, ABCC8 p.V421I, CEL I336T, CEL p.N493H, BLK p.L503P, HNF1B p.S362P, and PDX1 p.E69A mutations were identified for the first time as causative variants for MODY. More aggressive clinical features were observed in three patients with double- and triple-heterozygosity of PDX1 - KLF11 (p.E69A/p.S182R), CEL - ABCC8 - KCNJ11 (p.I336, p.G157R/p.R1103Q/p.A157A), and HNF1B - KLF11 (p.S362P/p.P261L). Interestingly, the clinical effects of the BLK mutations appear to be exacerbated in the presence of obesity. In conclusion, NGS analyses of the adult patients with suspected MODY appear to be informative in a clinical context. These findings warrant further clinical diagnostic research and development in different world populations suffering from diabetes with genetic underpinnings.
- Published
- 2022
- Full Text
- View/download PDF
4. Monogenic Childhood Diabetes: Dissecting Clinical Heterogeneity by Next-Generation Sequencing in Maturity-Onset Diabetes of the Young.
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Demirci DK, Darendeliler F, Poyrazoglu S, Al ADK, Gul N, Tutuncu Y, Gulfidan G, Arga KY, Cacina C, Ozturk O, Aydogan HY, and Satman I
- Subjects
- Child, High-Throughput Nucleotide Sequencing, Humans, Mutation genetics, Mutation, Missense, Diabetes Mellitus, Type 2 genetics
- Abstract
Diabetes is a common disorder with a heterogeneous clinical presentation and an enormous burden on health care worldwide. About 1-6% of patients with diabetes suffer from maturity-onset diabetes of the young (MODY), the most common form of monogenic diabetes with autosomal dominant inheritance. MODY is genetically and clinically heterogeneous and caused by genetic variations in pancreatic β-cell development and insulin secretion. We report here new findings from targeted next-generation sequencing (NGS) of 13 MODY-related genes. A sample of 22 unrelated pediatric patients with MODY and 13 unrelated healthy controls were recruited from a Turkish population. Targeted NGS was performed with Miseq 4000 (Illumina) to identify genetic variations in 13 MODY-related genes: HNF4A , GCK , HNF1A , PDX1 , HNF1B , NEUROD1 , KLF11 , CEL , PAX4 , INS , BLK , ABCC8 , and KCNJ11 . The NGS data were analyzed adhering to the Genome Analysis ToolKit (GATK) best practices pipeline, and variant filtering and annotation were performed. In the patient sample, we identified 43 MODY-specific genetic variations that were not present in the control group, including 11 missense mutations and 4 synonymous mutations. Importantly, and to the best of our knowledge, the missense mutations NEUROD1 p.D202E, KFL11 p.R461Q, BLK p.G248R, and KCNJ11 p.S385F were first associated with MODY in the present study. These findings contribute to the worldwide knowledge base on MODY and molecular correlates of clinical heterogeneity in monogenic childhood diabetes. Further comparative population genetics and functional genomics studies are called for, with an eye to discovery of novel diagnostics and personalized medicine in MODY. Because MODY is often misdiagnosed as type 1 or type 2 diabetes mellitus, advances in MODY diagnostics with NGS stand to benefit diabetes overall clinical care as well.
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- 2021
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- View/download PDF
5. MCP-1 and CCR2 gene variants and the risk for osteoporosis and osteopenia.
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Eraltan H, Cacina C, Kahraman OT, Kurt O, Aydogan HY, Uyar M, Can A, and Cakmakoğlu B
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- Adult, Aged, Female, Gene Frequency, Genetic Predisposition to Disease, Genotype, Haplotypes, Humans, Middle Aged, Polymerase Chain Reaction, Polymorphism, Genetic, Polymorphism, Restriction Fragment Length, Postmenopause, Bone Diseases, Metabolic genetics, Chemokine CCL2 genetics, Genetic Variation, Osteoporosis genetics, Receptors, CCR2 genetics
- Abstract
Aim: In this study, we investigated whether monocyte chemotactic protein 1 (MCP-1) and CC chemokine receptor 2 (CCR2) gene polymorphisms account for an increased risk of osteoporosis or osteopenia., Methods: Three hundred three postmenopausal women, 80 osteoporotic, 123 osteopenic, and 100 unrelated age-matched healthy controls, were included in the study. Genotyping of MCP-1 A2518G and CCR2 V64I gene polymorphisms were detected by PCR-RFLP., Results: We, for the first time, demonstrated the positive association of MCP-1 GG, CCR2 Val/Ile, and CCR2 Val+ genotype with osteoporosis risk. However, CCR2 Ile/Ile genotype frequencies were high in the control group compared with those of the patients with osteoporosis and osteopenia. Haplotype analysis confirmed the association of MCP-1/CCR2 gene variants with osteopenia and revealed that the frequency of MCP-1 A:CCR2 Val haplotype was significantly higher in patients when compared with controls., Conclusions: In conclusion, our findings have suggested that MCP-1 and CCR2 gene variants were risk factors for osteoporosis and osteopenia.
- Published
- 2012
- Full Text
- View/download PDF
6. Association of monocyte chemotactic protein-1 and CC chemokine receptor 2 gene variants with preeclampsia.
- Author
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Agachan B, Attar R, Isbilen E, Aydogan HY, Sozen S, Gurdol F, and Isbir T
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- Adolescent, Adult, Chemokine CCL2 immunology, Female, Genetic Association Studies, Genetic Predisposition to Disease, Haplotypes, Humans, Maternal Exposure, Polymorphism, Genetic, Pre-Eclampsia immunology, Pre-Eclampsia physiopathology, Pregnancy, Receptors, CCR2 immunology, Th1-Th2 Balance, Turkey, Chemokine CCL2 genetics, Pre-Eclampsia genetics, Receptors, CCR2 genetics
- Abstract
Preeclampsia complicates 10% of pregnancies in developing countries. It is one of the leading causes of maternal and fetal/neonatal mortality and morbidity worldwide. It has been suggested that maladaptation of the maternal immune response during pregnancy might be a causal factor for preeclampsia. According to immune maladaptation hypothesis, preeclampsia is due to an inappropriate regulation of normally Th2-deviated maternal immune responses, leading to a shift toward harmful Th1 immunity. Several studies indicate that monocyte chemotactic protein-1 (MCP-1) and CC chemokine receptor 2 (CCR2) are involved in Th1 and Th2 immunity. In this study, we investigated the association between MCP-1 A-2518G and CCR2-V64I polymorphisms and preeclampsia. One hundred eighty preeclamptic pregnant women and 145 healthy controls were included in the study. We observed that in preeclamptic women, MCP-1 G: CCR2 Val haplotype was significantly higher when compared with other haplotypes. In conclusion, we stated that MCP-1 and CCR2 gene variants might be associated with preeclampsia.
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- 2010
- Full Text
- View/download PDF
7. Associations of -374T/A polymorphism of receptor for advanced glycation end products (RAGE) gene in Turkish diabetic and non-diabetic patients with coronary artery disease.
- Author
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Kucukhuseyin O, Aydogan HY, Isbir CS, and Isbir T
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- Comorbidity, Coronary Artery Disease diagnosis, Coronary Artery Disease epidemiology, Diabetes Mellitus diagnosis, Diabetes Mellitus epidemiology, Female, Genotype, Humans, Male, Middle Aged, Polymorphism, Restriction Fragment Length, Receptor for Advanced Glycation End Products metabolism, Turkey epidemiology, Coronary Artery Disease genetics, Diabetes Mellitus genetics, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide, Receptor for Advanced Glycation End Products genetics
- Abstract
Background: In this study we aimed to determine the possible risks for the development of coronary artery disease (CAD) in diabetic (DM(+)) and non-diabetic (DM(-)) patients according to the -374T/A polymorphism of the receptor for advanced glycation end products (RAGE) gene which affects the function of RAGE itself., Materials and Methods: This study was carried out in 52 non-diabetic and 62 diabetic patients with CAD, and 55 CAD-free, healthy volunteers as controls. The A-T transversion polymorphism at position -374 in the promotor region of the RAGE gene was analyzed by polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) techniques., Results: The -374T/A AA genotype frequency was statistically higher in the whole patient group when compared with the control group (p=0.034), and statistically higher in the DM(+) group when compared with the control group (p=0.003). Homozygosity for the -374A allele was found to be higher, but not statistically meaningful, in DM(-) patients (17.3%) when compared with the control group (13.2%). In this study, in contrast with other studies, we found possesion of the A allele to be an independent risk factor in CAD in patients with diabetes mellitus., Conclusion: Possesion of the -374A allele may contribute to the CAD in diabetic patients with triggering macrophages by increased levels of AGEs.
- Published
- 2009
8. Is LOX-1 K167N polymorphism protective for coronary artery disease?
- Author
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Kurnaz O, Aydogan HY, Isbir CS, Tekeli A, and Isbir T
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- Coronary Artery Disease epidemiology, Female, Gene Frequency, Genotype, Humans, Male, Middle Aged, Molecular Epidemiology, Polymorphism, Restriction Fragment Length, Scavenger Receptors, Class E metabolism, Smoking, Turkey epidemiology, Coronary Artery Disease genetics, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide, Scavenger Receptors, Class E genetics
- Abstract
Background: Human lectin-like oxidized low-density lipoprotein receptor 1 (LOX-1, OLR1) has been identified as a cell surface endocytosis receptor for oxidized low-density lipoprotein (oxLDL) on vascular endothelial cells. OxLDLs are avidly ingested by macrophages, resulting in foam cell formation. OxLDLs are also involved in inducing smooth muscle cell migration, proliferation and transformation. A single nucleotide polymorphism K167N (G501C) of the LOX-1 gene results in an amino acid dimorphism (Lys/Asn) at residue 167. Replacement of this Lys residue causes reduced binding and internalization of oxLDL. The purpose of this study was to investigate the effect of the LOX-1 K167N gene polymorphism in Turkish patients with coronary artery disease (CAD)., Materials and Methods: K167N polymorphism were studied in 91 patients with CAD and 72 healthy controls by the PCR-RFLP method., Results: The frequencies of the KK genotype and the K allele were higher in the CAD group than the controls (p<0.05), while the frequency of the NN genotype was higher in the control group than in the CAD group (p<0.05). It was observed that the decreased CAD risk in patients who had the N allele was reversed by male sex (OR: 0.400 -->0.481) and smoking (OR: 0.400 -->0.949). Although male sex and smoking were lower than other cardiovascular risk factors in patients with the N allele they were higher than other cardiovascular risk factors in patients with the K allele., Conclusion: Male sex and smoking decrease the protective effects of the N allele. The adverse effects of the K allele on the CAD risk resulting from the K167N polymorphism appear to be independent of other cardiovascular risk factors.
- Published
- 2009
9. Associations of lipoprotein lipase S447X and apolipoprotein E genotypes with low-density lipoprotein subfractions in Turkish patients with coronary artery disease.
- Author
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Aydogan HY, Isbir S, Kurnaz O, Gormus U, and Isbir T
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- Age Distribution, Apolipoproteins E blood, Coronary Artery Disease blood, Coronary Artery Disease epidemiology, Electrophoresis, Gel, Two-Dimensional, Female, Gene Frequency, Genotype, Humans, Lipoprotein Lipase blood, Lipoproteins, LDL classification, Male, Middle Aged, Sex Distribution, Turkey epidemiology, Apolipoproteins E genetics, Coronary Artery Disease genetics, Genetic Predisposition to Disease, Lipoprotein Lipase genetics, Lipoproteins, LDL blood, Polymorphism, Restriction Fragment Length
- Abstract
Background: This study investigated associations of specific lipoprotein lipase (LPL) S447X and apolipoprotein (Apo)E allelic patterns with low-density lipoprotein (LDL) size and subfraction profiles in patients with coronary artery disease (CAD) and healthy individuals., Patients and Methods: Forty-one cases with CAD and 23 controls were compared regarding the occurrence of the Ser-->Stop codon of the LPL and ApoE polymorphism. Polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) techniques were utilized to perform genotyping, and LDL size and subfractions were assessed by a high-resolution, nongradient polyacrylamide gel electrophoresis technique., Results: The lowest small dense (sd) LDL level was observed for the homozygous LPLX447 genotype (6.00 +/- 4.00 mg/dl) while the highest sdLDL level was observed for LPLX447(+)/ApoE4(+) carriers (14.33 +/- 20.55 mg/dl) in the patient group. No protective effect of LPLX447 allele on the atherogenic LDL profile was observed when it was together with the ApoE4 allele. Furthermore, the detrimental effect of LPLS447 on the atherogenic LDL profile increased when it was present together with the ApoE4 allele., Conclusion: The X447 allele of the LPL gene may protect from atherogenic LDL subfraction, although this effect is small. We suggest that the S447X polymorphism of the LPL gene may modify the risk of atherogenic sdLDL fraction in an ApoE-dependent fashion.
- Published
- 2009
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