24 results on '"Audergon JM"'
Search Results
2. Dare to be resilient: the key to future pesticide-free orchards?
- Author
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Serrie M, Ribeyre F, Brun L, Audergon JM, Quilot B, and Roth M
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- Phenotype, Plant Diseases parasitology, Pesticides, Trees physiology
- Abstract
Considering the urgent need for more sustainable fruit tree production, it is high time to find durable alternatives to the systematic use of phytosanitary products in orchards. To this end, resilience can deliver a number of benefits. Relying on a combination of tolerance, resistance, and recovery traits, disease resilience appears as a cornerstone to cope with the multiple pest and disease challenges over an orchard's lifetime. Here, we describe resilience as the capacity of a tree to be minimally affected by external disturbances or to rapidly bounce back to normal functioning after being exposed to these disturbances. Based on a literature survey largely inspired from research on livestock, we highlight different approaches for dissecting phenotypic and genotypic components of resilience. In particular, multisite experimental designs and longitudinal measures of so-called 'resilience biomarkers' are required. We identified a list of promising biomarkers relying on ecophysiological and digital measurements. Recent advances in high-throughput phenotyping and genomics tools will likely facilitate fine scale temporal monitoring of tree health, allowing identification of resilient genotypes with the calculation of specific resilience indicators. Although resilience could be considered as a 'black box' trait, we demonstrate how it could become a realistic breeding goal., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
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- 2024
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3. The Molecular Characterization of a New Prunus -Infecting Cheravirus and Complete Genome Sequence of Stocky Prune Virus.
- Author
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Khalili M, Candresse T, Brans Y, Faure C, Audergon JM, Decroocq V, Roch G, and Marais A
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- Phylogeny, Genome, Viral, RNA, Viral genetics, Plant Diseases, Prunus, Secoviridae genetics, Viruses genetics
- Abstract
As part of a virome characterization of Prunus species, a novel cheravirus was discovered in two wild species, Prunus brigantina and P. mahaleb , and in an apricot ( P. armeniaca ) accession. The sequence of the two genomic RNAs was completed for two isolates. The Pro-Pol conserved region showed 86% amino acid (aa) identity with the corresponding region of trillium govanianum cheravirus (TgCV), a tentative Cheravirus member, whereas the combined coat proteins (CPs) shared only 40% aa identity with TgCV CPs, well below the species demarcation threshold for the genus. This suggests that the new virus should be considered a new species for which the name alpine wild prunus virus (AWPV) is proposed. In parallel, the complete genome sequence of stocky prune virus (StPV), a poorly known cheravirus for which only partial sequences were available, was determined. A phylogenetic analysis showed that AWPV, TgCV and StPV form a distinct cluster, away from other cheraviruses.
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- 2022
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4. Chloroplastic and nuclear diversity of endemic Prunus armeniaca L. species in the oasis agroecosystems.
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Bourguiba H, Batnini MA, Naccache C, Zitouna N, Trifi-Farah N, Audergon JM, and Krichen L
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- Ecosystem, Endangered Species, Haplotypes, Microsatellite Repeats, Seeds genetics, Genome, Chloroplast, Polymorphism, Genetic, Prunus armeniaca genetics
- Abstract
Tunisia is characterized by the presence of specific seed-propagated apricot (Prunus armeniaca L.) material which is found in the oasis agroecosystems. In order to highlight the genetic diversity, population structure, and demographic history of this germplasm, 33 apricot accessions collected from six different oasis regions in southwestern Tunisia were genotyped using 24 microsatellite markers. A total number of 111 alleles was detected with an average of 4.62 alleles per locus. Bayesian model-based clustering analysis indicated four subdivisions within the collection sampled that corresponded mainly to the geographic origin of the material. The analysis of the 33 accessions using chloroplast markers allowed the identification of 32 haplotypes. Overall, the present study highlighted the high Tunisian apricot's diversity in the traditional oasis agroecosystems with low genetic differentiation. Understanding the structure of seed-propagated apricot collection is crucial for managing collections in regard to adaptive traits for Arid and Saharan climates as well as for identifying interesting genotypes that can be integrated into international coordinated actions of breeding programs., (© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)
- Published
- 2021
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5. Population genomics of apricots unravels domestication history and adaptive events.
- Author
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Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, Istace B, Denis E, Carrère S, Audergon JM, Roch G, Lambert P, Zhebentyayeva T, Liu WS, Bouchez O, Lopez-Roques C, Serre RF, Debuchy R, Tran J, Wincker P, Chen X, Pétriacq P, Barre A, Nikolski M, Aury JM, Abbott AG, Giraud T, and Decroocq V
- Subjects
- Chromosomes, Plant genetics, Disease Resistance genetics, Evolution, Molecular, Fruit classification, Fruit genetics, Fruit growth & development, Gene Flow, Genetic Variation, Life Cycle Stages genetics, Metagenomics, Phenotype, Phylogeny, Prunus armeniaca classification, Prunus armeniaca growth & development, Selection, Genetic, Domestication, Genome, Plant genetics, Prunus armeniaca genetics
- Abstract
Among crop fruit trees, the apricot (Prunus armeniaca) provides an excellent model to study divergence and adaptation processes. Here, we obtain nearly 600 Armeniaca apricot genomes and four high-quality assemblies anchored on genetic maps. Chinese and European apricots form two differentiated gene pools with high genetic diversity, resulting from independent domestication events from distinct wild Central Asian populations, and with subsequent gene flow. A relatively low proportion of the genome is affected by selection. Different genomic regions show footprints of selection in European and Chinese cultivated apricots, despite convergent phenotypic traits, with predicted functions in both groups involved in the perennial life cycle, fruit quality and disease resistance. Selection footprints appear more abundant in European apricots, with a hotspot on chromosome 4, while admixture is more pervasive in Chinese cultivated apricots. Our study provides clues to the biology of selected traits and targets for fruit tree research and breeding.
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- 2021
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6. Changes in cell wall neutral sugar composition related to pectinolytic enzyme activities and intra-flesh textural property during ripening of ten apricot clones.
- Author
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Ayour J, Le Bourvellec C, Gouble B, Audergon JM, Benichou M, and Renard CMGC
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- Carboxylic Ester Hydrolases metabolism, Fruit chemistry, Humans, Pectins metabolism, Plant Proteins metabolism, Prunus armeniaca growth & development, Sugars chemistry, beta-Galactosidase metabolism, Cell Wall chemistry, Fruit cytology, Prunus armeniaca chemistry, Prunus armeniaca cytology, Sugars analysis
- Abstract
The changes of texture and cell wall characteristics of apricot were investigated in ten clones at two maturity stages. Fruit firmness, cell wall composition and enzyme activity of three apricot flesh zones were analysed. The AIS (alcohol-insoluble solids) were characterised by high amounts of uronic acid (179-300 mg g
-1 AIS) and relatively high amounts of cellulosic glucose (118-214 mg g-1 AIS). The methylesterification degree varied significantly among the different clones ranging from 58 to 97 in Ab 5 and Mans 15 respectively. Conversely to zones firmness, enzymatic activity was higher in pistil followed by equatorial and peduncle zones. The ripening effect has been observed in firmness evolution according to enzymatic activity. This correlation allowed a classification of clones depending on softening. Among studied clones, Ab 5, Marouch 16, Mans 15 and Cg 2 were less influenced by softening and have the advantage of a technological valorisation for the processing industry., (Copyright © 2020 Elsevier Ltd. All rights reserved.)- Published
- 2021
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7. Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality.
- Author
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Nsibi M, Gouble B, Bureau S, Flutre T, Sauvage C, Audergon JM, and Regnard JL
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- Animals, Bayes Theorem, Fruit genetics, Genome, Plant, Genomics, Models, Genetic, Plant Breeding, Polymorphism, Single Nucleotide, Selection, Genetic, Prunus armeniaca
- Abstract
Genomic selection (GS) is a breeding approach which exploits genome-wide information and whose unprecedented success has shaped several animal and plant breeding schemes through delivering their genetic progress. This is the first study assessing the potential of GS in apricot ( Prunus armeniaca ) to enhance postharvest fruit quality attributes. Genomic predictions were based on a F1 pseudo-testcross population, comprising 153 individuals with contrasting fruit quality traits. They were phenotyped for physical and biochemical fruit metrics in contrasting climatic conditions over two years. Prediction accuracy (PA) varied from 0.31 for glucose content with the Bayesian LASSO (BL) to 0.78 for ethylene production with RR-BLUP, which yielded the most accurate predictions in comparison to Bayesian models and only 10% out of 61,030 SNPs were sufficient to reach accurate predictions. Useful insights were provided on the genetic architecture of apricot fruit quality whose integration in prediction models improved their performance, notably for traits governed by major QTL. Furthermore, multivariate modeling yielded promising outcomes in terms of PA within training partitions partially phenotyped for target traits. This provides a useful framework for the implementation of indirect selection based on easy-to-measure traits. Thus, we highlighted the main levers to take into account for the implementation of GS for fruit quality in apricot, but also to improve the genetic gain in perennial species., (Copyright © 2020 Nsibi et al.)
- Published
- 2020
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8. Genetic Structure of a Worldwide Germplasm Collection of Prunus armeniaca L. Reveals Three Major Diffusion Routes for Varieties Coming From the Species' Center of Origin.
- Author
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Bourguiba H, Scotti I, Sauvage C, Zhebentyayeva T, Ledbetter C, Krška B, Remay A, D'Onofrio C, Iketani H, Christen D, Krichen L, Trifi-Farah N, Liu W, Roch G, and Audergon JM
- Abstract
The characterization of the largest worldwide representative data set of apricot ( Prunus armeniaca L.) germplasm was performed using molecular markers. Genetic diversity and structure of the cultivated apricot genetic resources were analyzed to decipher the history of diffusion of this species around the world. A common set of 25 microsatellite markers was used for genotyping a total of 890 apricot accessions in different collections from the center of origin to the more recent regions of apricot culture. Using a Bayesian model-based clustering approach, the apricot genotypes can be structured into five different genetic clusters (F
ST = 0.174), correlated with the geographical regions of origin of the accessions. Accessions from China and Central Asia were clustered together and exhibited the highest levels of diversity, confirming an origin in this region. A loss of genetic diversity was observed from the center of origin to both western and eastern zones of recent apricot culture. Altogether, our results revealed that apricot spread from China and Central Asia, defined as the center of origin, following three major diffusion routes with a decreasing gradient of genetic variation in each geographical group. The identification of specific alleles outside the center of origin confirmed the existence of different secondary apricot diversification centers. The present work provides more understanding of the worldwide history of apricot species diffusion as well as the field of conservation of the available genetic resources. Data have been used to define an apricot core collection based on molecular marker diversity which will be useful for further identification of genomic regions associated with commercially important horticultural traits through genome-wide association studies to sustain apricot breeding programs., (Copyright © 2020 Bourguiba, Scotti, Sauvage, Zhebentyayeva, Ledbetter, Krška, Remay, D’Onofrio, Iketani, Christen, Krichen, Trifi-Farah, Liu, Roch and Audergon.)- Published
- 2020
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9. Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach.
- Author
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Yu J, Conrad AO, Decroocq V, Zhebentyayeva T, Williams DE, Bennett D, Roch G, Audergon JM, Dardick C, Liu Z, Abbott AG, and Staton ME
- Abstract
Dormancy is a physiological state that plants enter for winter hardiness. Environmental-induced dormancy onset and release in temperate perennials coordinate growth cessation and resumption, but how the entire process, especially chilling-dependent dormancy release and flowering, is regulated remains largely unclear. We utilized the transcriptome profiles of floral buds from fall to spring in apricot ( Prunus armeniaca ) genotypes with contrasting bloom dates and peach ( Prunus persica ) genotypes with contrasting chilling requirements (CR) to explore the genetic regulation of bud dormancy. We identified distinct gene expression programming patterns in endodormancy and ecodormancy that reproducibly occur between different genotypes and species. During the transition from endo- to eco-dormancy, 1,367 and 2,102 genes changed in expression in apricot and peach, respectively. Over 600 differentially expressed genes were shared in peach and apricot, including three DORMANCY ASSOCIATED MADS-box ( DAM ) genes (DAM4 , DAM5 , and DAM6 ). Of the shared genes, 99 are located within peach CR quantitative trait loci, suggesting these genes as candidates for dormancy regulation. Co-expression and functional analyses revealed that distinctive metabolic processes distinguish dormancy stages, with genes expressed during endodormancy involved in chromatin remodeling and reproduction, while the genes induced at ecodormancy were mainly related to pollen development and cell wall biosynthesis. Gene expression analyses between two Prunus species highlighted the conserved transcriptional control of physiological activities in endodormancy and ecodormancy and revealed genes that may be involved in the transition between the two stages., (Copyright © 2020 Yu, Conrad, Decroocq, Zhebentyayeva, Williams, Bennett, Roch, Audergon, Dardick, Liu, Abbott and Staton.)
- Published
- 2020
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10. Association of the phenylpropanoid pathway with dormancy and adaptive trait variation in apricot (Prunus armeniaca).
- Author
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Conrad AO, Yu J, Staton ME, Audergon JM, Roch G, Decroocq V, Knagge K, Chen H, Zhebentyayeva T, Liu Z, Dardick C, Nelson CD, and Abbott AG
- Subjects
- Flowers, Phenotype, Prunus armeniaca
- Abstract
Trees use many mechanisms to adapt and respond to stressful conditions. The phenylpropanoid pathway in particular is known to be associated with a diverse suite of plant stress responses. In this study, we explored the relationship between the phenylpropanoid pathway metabolite production, gene expression and adaptive trait variation associated with floral bud reactivation during and following dormancy in Prunus armeniaca L. (apricot). Concentrations of eight phenylpropanoid metabolites were measured during chill accumulation and at developmental stages corresponding to the emergence of sepals and petals in floral buds of varieties that differ phenotypically in bloom date (BD). A significant interaction effect of chill hours and BD phenotype on the concentration of each of the compounds was observed (mixed analysis of variance, P < 0.05), with the concentration of most phenylpropanoid metabolites dropping precipitously when sepals and petals emerged. While phenylpropanoid biosynthetic gene expression patterns were more variable in general, expression changed over time and was impacted, although to a lesser degree, by BD phenotype. Furthermore, separation of BD phenotypic groups was most pronounced when early and late BD varieties were at different developmental stages, i.e., 800 chill hours. Taken together, these results suggest that the phenylpropanoid pathway is associated with floral bud reactivation in apricot. Furthermore, we show that the phenylpropanoid pathway is also impacted by phenological trait variation associated with dormancy. A better understanding of how apricot and other perennial tree species respond and adapt to environmental perturbations will be critical for improvement programs aimed at identifying and breeding trees more suitable for rapidly changing environments., (© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2019
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11. Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker.
- Author
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Omrani M, Roth M, Roch G, Blanc A, Morris CE, and Audergon JM
- Subjects
- Disease Resistance, Linkage Disequilibrium genetics, Polymorphism, Single Nucleotide genetics, Pseudomonas syringae pathogenicity, Quantitative Trait Loci genetics, Genome-Wide Association Study methods, Prunus armeniaca microbiology
- Abstract
Background: Diseases caused by Pseudomonas syringae (Ps) are recognized as the most damaging factors in fruit trees with a significant economic and sanitary impact on crops. Among them, bacterial canker of apricot is exceedingly difficult to control due to a lack of efficient prophylactic measures. Several sources of partial resistance have been identified among genetic resources but the underlying genetic pattern has not been elucidated thus far. In this study, we phenotyped bacterial canker susceptibility in an apricot core-collection of 73 accessions over 4 years by measuring canker and superficial browning lengths issued from artificial inoculations in the orchard. In order to investigate the genetic architecture of partial resistance, we performed a genome-wide association study using best linear unbiased predictors on genetic (G) and genetic x year (G × Y) interaction effects extracted from linear mixed models. Using a set of 63,236 single-nucleotide polymorphism markers genotyped in the germplasm over the whole genome, multi-locus and multi-variate mixed models aimed at mapping the resistance while controlling for relatedness between individuals., Results: We detected 11 significant associations over 7 candidate loci linked to disease resistance under the two most severe years. Colocalizations between G and G × Y terms indicated a modulation on allelic effect depending on environmental conditions. Among the candidate loci, two loci on chromosomes 5 and 6 had a high impact on both canker length and superficial browning, explaining 41 and 26% of the total phenotypic variance, respectively. We found unexpected long-range linkage disequilibrium (LD) between these two markers revealing an inter-chromosomal LD block linking the two underlying genes. This result supports the hypothesis of a co-adaptation effect due to selection through population demography. Candidate genes annotations suggest a functional pathway involving abscisic acid, a hormone mainly known for mediating abiotic stress responses but also reported as a potential factor in plant-pathogen interactions., Conclusions: Our study contributed to the first detailed characterization of the genetic determinants of partial resistance to bacterial canker in a Rosaceae species. It provided tools for fruit tree breeding by identifying progenitors with favorable haplotypes and by providing major-effect markers for a marker-assisted selection strategy.
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- 2019
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12. Impact of canning and storage on apricot carotenoids and polyphenols.
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Le Bourvellec C, Gouble B, Bureau S, Reling P, Bott R, Ribas-Agusti A, Audergon JM, and Renard CMGC
- Subjects
- Carotenoids, Flavonoids, Polyphenols, Prunus armeniaca
- Abstract
Apricot polyphenols and carotenoids were monitored after industrial and domestic cooking, and after 2months of storage for industrial processing. The main apricot polyphenols were flavan-3-ols, flavan-3-ol monomers and oligomers, with an average degree of polymerization between 4.7 and 10.7 and caffeoylquinic acids. Flavonols and anthocyanins were minor phenolic compounds. Upon processing procyanidins were retained in apricot tissue. Hydroxycinnamic acids, flavan-3-ol monomers, flavonols and anthocyanins leached in the syrup. Flavonol concentrations on per-can basis were significantly increased after processing. Industrial processing effects were higher than domestic cooking probably due to higher temperature and longer duration. After 2months of storage, among polyphenols only hydroxycinnamic acids, flavan-3-ol monomers and anthocyanins were reduced. Whichever the processing method, no significant reductions of total carotenoids were observed after processing. The cis-β-carotene isomer was significantly increased after processing but with a lower extent in domestic cooking. Significant decreased in total carotenoid compounds occurred during storage., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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13. Genome-wide association links candidate genes to resistance to Plum Pox Virus in apricot (Prunus armeniaca).
- Author
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Mariette S, Wong Jun Tai F, Roch G, Barre A, Chague A, Decroocq S, Groppi A, Laizet Y, Lambert P, Tricon D, Nikolski M, Audergon JM, Abbott AG, and Decroocq V
- Subjects
- Chromosome Mapping, Disease Resistance genetics, Genetics, Population, Genome, Plant, Genome-Wide Association Study, Host-Pathogen Interactions genetics, Linkage Disequilibrium, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Plant Diseases genetics, Plant Diseases virology, Plum Pox Virus pathogenicity, Prunus armeniaca genetics, Prunus armeniaca virology
- Abstract
In fruit tree species, many important traits have been characterized genetically by using single-family descent mapping in progenies segregating for the traits. However, most mapped loci have not been sufficiently resolved to the individual genes due to insufficient progeny sizes for high resolution mapping and the previous lack of whole-genome sequence resources of the study species. To address this problem for Plum Pox Virus (PPV) candidate resistance gene identification in Prunus species, we implemented a genome-wide association (GWA) approach in apricot. This study exploited the broad genetic diversity of the apricot (Prunus armeniaca) germplasm containing resistance to PPV, next-generation sequence-based genotyping, and the high-quality peach (Prunus persica) genome reference sequence for single nucleotide polymorphism (SNP) identification. The results of this GWA study validated previously reported PPV resistance quantitative trait loci (QTL) intervals, highlighted other potential resistance loci, and resolved each to a limited set of candidate genes for further study. This work substantiates the association genetics approach for resolution of QTL to candidate genes in apricot and suggests that this approach could simplify identification of other candidate genes for other marked trait intervals in this germplasm., (© 2015 INRA, UMR 1332 BFP New Phytologist © 2015 New Phytologist Trust.)
- Published
- 2016
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14. Comparison of the genetic determinism of two key phenological traits, flowering and maturity dates, in three Prunus species: peach, apricot and sweet cherry.
- Author
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Dirlewanger E, Quero-García J, Le Dantec L, Lambert P, Ruiz D, Dondini L, Illa E, Quilot-Turion B, Audergon JM, Tartarini S, Letourmy P, and Arús P
- Subjects
- Species Specificity, Acclimatization genetics, Flowering Tops genetics, Genetic Linkage, Genome, Plant physiology, Prunus genetics, Quantitative Trait Loci physiology
- Abstract
The present study investigates the genetic determinism of flowering and maturity dates, two traits highly affected by global climate change. Flowering and maturity dates were evaluated on five progenies from three Prunus species, peach, apricot and sweet cherry, during 3-8 years. Quantitative trait locus (QTL) detection was performed separately for each year and also by integrating data from all years together. High heritability estimates were obtained for flowering and maturity dates. Several QTLs for flowering and maturity dates were highly stable, detected each year of evaluation, suggesting that they were not affected by climatic variations. For flowering date, major QTLs were detected on linkage groups (LG) 4 for apricot and sweet cherry and on LG6 for peach. QTLs were identified on LG2, LG3, LG4 and LG7 for the three species. For maturity date, a major QTL was detected on LG4 in the three species. Using the peach genome sequence data, candidate genes underlying the major QTLs on LG4 and LG6 were investigated and key genes were identified. Our results provide a basis for the identification of genes involved in flowering and maturity dates that could be used to develop cultivar ideotypes adapted to future climatic conditions.
- Published
- 2012
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15. Relative efficiency of morphological characters and molecular markers in the establishment of an apricot core collection.
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Krichen L, Audergon JM, and Trifi-Farah N
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- Algorithms, Amplified Fragment Length Polymorphism Analysis, Crops, Agricultural anatomy & histology, Crops, Agricultural genetics, Fruit anatomy & histology, Fruit genetics, Genetic Markers, Plant Leaves anatomy & histology, Plant Leaves genetics, Quantitative Trait, Heritable, Tunisia, Genetic Variation, Genome, Plant, Phenotype, Prunus anatomy & histology, Prunus genetics
- Abstract
In order to optimize the management of genetic resources, in most cases a representative sample of the germplasm collections needs to be developed. The establishment of a core collection is thus of major importance either to minimize the cost associated with the management of the associated germplasm or to apply analysis onto representative bases. In order to select a representative core collection among the Tunisian apricot germplasm of 110 accessions large, the Maximization strategy algorithm was used. This algorithm was shown to be the most convenient when using both morphological traits and molecular markers. Three core collections based on morphological characters, molecular markers or the combined data were compared. Our data indicate that both the molecular and the morphological markers have to be considered to obtain a core collection that represents the global diversity of the 110 accessions. Using this method, a subset of 34 selected accessions was found to represent accurately the 110 accessions present in the whole collection (75 to 100% for the morphological characters and 97% of the molecular markers). These results show that the combination of molecular and morphological markers is an efficient way to characterize the apricot core collection and provides an exhaustive coverage for the analyzed diversity on morphological and genetic bases., (© 2012 The Authors.)
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- 2012
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16. Loss of genetic diversity as a signature of apricot domestication and diffusion into the Mediterranean Basin.
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Bourguiba H, Audergon JM, Krichen L, Trifi-Farah N, Mamouni A, Trabelsi S, D'Onofrio C, Asma BM, Santoni S, and Khadari B
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- Agriculture, Alleles, Bayes Theorem, Cluster Analysis, Computer Simulation, Ecotype, Gene Pool, Genetic Loci genetics, Geography, Heterozygote, Mediterranean Region, Microsatellite Repeats genetics, Models, Genetic, Polymorphism, Genetic, Crops, Agricultural genetics, Evolution, Molecular, Genetic Variation genetics, Introduced Species, Prunus genetics
- Abstract
Background: Domestication generally implies a loss of diversity in crop species relative to their wild ancestors because of genetic drift through bottleneck effects. Compared to native Mediterranean fruit species like olive and grape, the loss of genetic diversity is expected to be more substantial for fruit species introduced into Mediterranean areas such as apricot (Prunus armeniaca L.), which was probably primarily domesticated in China. By comparing genetic diversity among regional apricot gene pools in several Mediterranean areas, we investigated the loss of genetic diversity associated with apricot selection and diffusion into the Mediterranean Basin., Results: According to the geographic origin of apricots and using Bayesian clustering of genotypes, Mediterranean apricot (207 genotypes) was structured into three main gene pools: 'Irano-Caucasian', 'North Mediterranean Basin' and 'South Mediterranean Basin'. Among the 25 microsatellite markers used, only one displayed deviations from the frequencies expected under neutrality. Similar genetic diversity parameters were obtained within each of the three main clusters using both all SSR loci and only 24 SSR loci based on the assumption of neutrality. A significant loss of genetic diversity, as assessed by the allelic richness and private allelic richness, was revealed from the 'Irano-Caucasian' gene pool, considered as a secondary centre of diversification, to the northern and southwestern Mediterranean Basin. A substantial proportion of shared alleles was specifically detected when comparing gene pools from the 'North Mediterranean Basin' and 'South Mediterranean Basin' to the secondary centre of diversification., Conclusions: A marked domestication bottleneck was detected with microsatellite markers in the Mediterranean apricot material, depicting a global image of two diffusion routes from the 'Irano-Caucasian' gene pool: North Mediterranean and Southwest Mediterranean. This study generated genetic insight that will be useful for management of Mediterranean apricot germplasm as well as genetic selection programs related to adaptive traits.
- Published
- 2012
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17. Grafting versus seed propagated apricot populations: two main gene pools in Tunisia evidenced by SSR markers and model-based Bayesian clustering.
- Author
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Bourguiba H, Khadari B, Krichen L, Trifi-Farah N, Santoni S, and Audergon JM
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- Alleles, Bayes Theorem, China, Cluster Analysis, Europe, Genetic Structures, Genetic Variation, Middle East, Phylogeography, Polymorphism, Genetic, Seeds genetics, Tunisia, Gene Pool, Microsatellite Repeats, Prunus genetics
- Abstract
Apricot was introduced into the Mediterranean Basin from China and Asian mountains through the Middle-East and the Central Europe. Traditionally present in Tunisia, we were interested in accessing the origin of apricot species in the country, and in particular in the number and the location of its introductions. A set of 82 representative apricot accessions including 49 grafted cultivars and 33 seed propagated 'Bargougs' were genotyped using 24 microsatellite loci revealing a total of 135 alleles. The model-based Bayesian clustering analysis using both Structure and InStruct programs as well as the multivariate method revealed five distinct genetic clusters. The genetic differentiation among clusters showed that cluster 1, with only four cultivars, was the most differentiated from the four remaining genetic clusters, which constituted the largest part of the studied germplasm. According to their geographic origin, the five identified groups (north, centre, south, Gafsa oasis and other oases groups) enclosed a similar variation within group, with a low level of differentiation. Overall results highlighted the distinction of two apricot gene pools in Tunisia related to the different mode of propagation of the cultivars: grafted and seed propagated apricot, which enclosed a narrow genetic basis. Our findings support the assumption that grafting and seed propagated apricots shared the same origin.
- Published
- 2010
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18. Pomological and nutraceutical properties in apricot fruit: cultivation systems and cold storage fruit management.
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Leccese A, Bureau S, Reich M, Renard MG, Audergon JM, Mennone C, Bartolini S, and Viti R
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- Analysis of Variance, Cryopreservation, Dietary Supplements, Food Handling methods, Food Technology, Fruit chemistry, Genotype, Nutritive Value, Principal Component Analysis, Antioxidants analysis, Carotenoids analysis, Food Preservation methods, Fruit standards, Phenols analysis, Plant Extracts chemistry, Prunus chemistry, Prunus genetics
- Abstract
We have investigated the effect of cultivation systems and fruit post-harvest management on the antioxidant properties of apricot fruits. Trees of five cultivars 'Tyrinthos', 'Cafona', 'Bella d'Italia', 'Vitillo' and 'Pellecchiella' were cultivated under integrated and organic systems. Fruits were collected at full maturity stage and analyzed either immediately or after storage at 4+/-0.5 degrees C and 85% of relative humidity for seven and 14 days. The main pomological traits (weight, colour, flesh firmness, total soluble sugars, titratable acidity) and antioxidant properties were analyzed. The total antioxidant capacity (TAC by TEAC method), total phenols content (TP by Folin-Ciocalteu method) and carotenoid content by HPLC-DAD were monitored. Cultivar characterization by principal component analysis (PCA) indicated a large variability on pomological and antioxidant properties of apricot fruits. 'Bella d'Italia' showed better TAC and TP values compared to the other cultivars. ANOVA interactions between cultivar and cultivation system (organic/integrated) were found for the antioxidant properties. These interactions may help to select a set of genotypes with better performances under organic system, which in our study might be indicated in 'Cafona' and 'Bella d'Italia'.
- Published
- 2010
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19. Application of reflectance colorimeter measurements and infrared spectroscopy methods to rapid and nondestructive evaluation of carotenoids content in apricot (Prunus armeniaca L.).
- Author
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Ruiz D, Reich M, Bureau S, Renard CM, and Audergon JM
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- Chromatography, High Pressure Liquid, Color, Prunus genetics, Spectroscopy, Near-Infrared, Carotenoids analysis, Fruit chemistry, Prunus chemistry, Spectroscopy, Fourier Transform Infrared methods
- Abstract
The importance of carotenoid content in apricot (Prunus armeniaca L.) is recognized not only because of the color that they impart but also because of their protective activity against human diseases. Current methods to assess carotenoid content are time-consuming, expensive, and destructive. In this work, the application of rapid and nondestructive methods such as colorimeter measurements and infrared spectroscopy has been evaluated for carotenoid determination in apricot. Forty apricot genotypes covering a wide range of peel and flesh colors have been analyzed. Color measurements on the skin and flesh ( L*, a*, b*, hue, chroma, and a*/ b* ratio) as well as Fourier transform near-infrared spectroscopy (FT-NIR) on intact fruits and Fourier transform mid-infrared spectroscopy (FT-MIR) on ground flesh were correlated with the carotenoid content measured by high-performance liquid chromatography. A high variability in color values and carotenoid content was observed. Partial least squares regression analyses between beta-carotene content and provitamin A activity and color measurements showed a high fit in peel, flesh, and edible apricot portion (R(2) ranged from 0.81 to 0.91) and low prediction error. Regression equations were developed for predicting carotenoid content by using color values, which appeared as a simple, rapid, reliable, and nondestructive method. However, FT-NIR and FT-MIR models showed very low R(2) values and very high prediction errors for carotenoid content.
- Published
- 2008
- Full Text
- View/download PDF
20. Ethylene regulation of carotenoid accumulation and carotenogenic gene expression in colour-contrasted apricot varieties (Prunus armeniaca).
- Author
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Marty I, Bureau S, Sarkissian G, Gouble B, Audergon JM, and Albagnac G
- Subjects
- Color, Cyclopropanes pharmacology, Ethylenes pharmacology, Fruit metabolism, Gene Expression Regulation, Plant drug effects, Plant Growth Regulators pharmacology, Prunus drug effects, Carotenoids biosynthesis, Ethylenes metabolism, Gene Expression Regulation, Plant physiology, Plant Growth Regulators metabolism, Plant Growth Regulators physiology, Prunus metabolism
- Abstract
In order to elucidate the regulation mechanisms of carotenoid biosynthesis in apricot fruit (Prunus armeniaca), carotenoid content and carotenogenic gene expression were analysed as a function of ethylene production in two colour-contrasted apricot varieties. Fruits from Goldrich (GO) were orange, while Moniqui (MO) fruits were white. Biochemical analysis showed that GO accumulated precursors of the uncoloured carotenoids, phytoene and phytofluene, and the coloured carotenoid, beta-carotene, while Moniqui (MO) fruits only accumulated phytoene and phytofluene but no beta-carotene. Physiological analysis showed that ethylene production was clearly weaker in GO than in MO. Carotenogenic gene expression (Psy-1, Pds, and Zds) and carotenoid accumulation were measured with respect to ethylene production which is initiated in mature green fruits at the onset of the climacteric stage or following exo-ethylene or ethylene-receptor inhibitor (1-MCP) treatments. Results showed (i) systematically stronger expression of carotenogenic genes in white than in orange fruits, even for the Zds gene involved in beta-carotene synthesis that is undetectable in MO fruits, (ii) ethylene-induction of Psy-1 and Pds gene expression and the corresponding product accumulation, (iii) Zds gene expression and beta-carotene production independent of ethylene. The different results obtained at physiological, biochemical, and molecular levels revealed the complex regulation of carotenoid biosynthesis in apricots and led to suggestions regarding some possible ways to regulate it.
- Published
- 2005
- Full Text
- View/download PDF
21. Genetic linkage maps of two apricot cultivars ( Prunus armeniaca L.) compared with the almond Texas x peach Earlygold reference map for Prunus.
- Author
-
Lambert P, Hagen LS, Arus P, and Audergon JM
- Subjects
- Crosses, Genetic, Minisatellite Repeats genetics, Polymorphism, Restriction Fragment Length, Chromosome Mapping, Prunus genetics
- Abstract
Several genetic linkage maps have been published in recent years on different Prunus species suggesting a high level of resemblance among the genomes of these species. One of these maps (Joobeur et al., Theor Appl Genet 97:1034-1041 [(1998); Aranzana et al., Theor Appl Genet 106:819-825 (2002b)] constructed from interspecific almond Texas x peach Earlygold F(2) progeny (TxE) was considered to be saturated. We selected 142 F(1) apricot hybrids obtained from a cross between P. armeniaca cvs. Polonais and Stark Early Orange for mapping. Eighty-eight RFLP probes and 20 peach SSR primer pairs used for the 'reference map' were selected to cover the eight linkage groups. One P. davidiana and an additional 14 apricot simple sequence repeats (SSRs) were mapped for the F(1) progeny. Eighty-three amplified fragment length polymorphisms were added in order to increase the density of the maps. Separate maps were made for each parent according to the 'double pseudo-testcross' model of analysis. A total of 141 markers were placed on the map of Stark Early Orange, defining a total length of 699 cM, and 110 markers were placed on the map of Polonais, defining a total length of 538 cM. Twenty-one SSRs and 18 restriction placed in the TxE map were heterozygous in both parents (anchor loci), thereby enabling the alignment of the eight homologous linkage groups of each map. Except for 15 markers, most markers present in each linkage group in apricot were aligned with those in TxE map, indicating a high degree of colinearity between the apricot genome and the peach and almond genomes. These results suggest a strong homology of the genomes between these species and probably between Prunophora and Amygdalus sub-genera.
- Published
- 2004
- Full Text
- View/download PDF
22. Genetic diversity in apricot revealed by AFLP markers: species and cultivar comparisons.
- Author
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Hagen S, Khadari B, Lambert P, and Audergon JM
- Abstract
The genetic diversity of apricot ( Prunus armeniaca; 2n = 16) was studied using AFLP markers. Forty seven apricot cultivars were selected from the following geographic regions: Europe, North America, North Africa, Turkey, Iran and China. Five EcoRI- MseI AFLP primer combinations revealed 416 legible bands, of which 379 were polymorphic markers. A similarity matrix was prepared using the simple matching coefficient of similarity. A UPGMA dendrogram demonstrated a gradient of decreasing genetic diversity of varieties from the former USSR to Southern Europe. This is coherent with the historical dissemination of apricot from its center of origin in Asia. The American cultivars were intermediate demonstrating a different genetic base than the European and/or Mediterranean cultivars. Euclidean distances from the first ten Factorial Component Analysis coordinate axes were used to generate a tree using the Ward algorithm. The results of these analyses were evaluated based on the known geographic origins and agronomic characteristics of the cultivars studied. Four cultivar groups were identified: Diversification, Geographically Adaptable, Continental Europe and Mediterranean Basin. To evaluate the relationship of the common apricot with some closely related species, one or two accessions of the following related species or sub-species from within the section Armeniaca were included in the analysis: Prunus armeniaca var. ansu, Prunus mume, Prunus brigantiaca, Prunus dasycarpa, and Prunus holosericea. A Neighbour Joining dendrogram was made using the similarity matrix. The P. holosericea accession fell well within the cultivar group, thus supporting its classification as a variant of P. armeniaca. The P. armeniaca var. ansu accession was sister to the common apricot cluster with a bootstrap value of 96%. P. mume was farther removed. P. brigantiaca was the most-distant from the common apricots. P. dasycarpa was intermediate between P. brigantiaca and P. mume, in accord with its plum-apricot hybrid origin. The results have a direct application for the selection of new breeding progenitors.
- Published
- 2002
- Full Text
- View/download PDF
23. Efficiency of inoculation of peach GF305 seedlings with Plum pox virus by different methods.
- Author
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Martínez-Gómez P, Audergon JM, and Dicenta F
- Subjects
- Animals, Aphids virology, Disease Vectors, Virology methods, Fruit virology, Plant Diseases virology, Plum Pox Virus
- Abstract
Peach GF305 is frequently used as rootstock in experiments to evaluate the resistance of different species of Prunus to Plum pox virus (PPV) because of its extreme susceptibility. However, transmission of PPV in Prunus species is sometimes problematic due to its low concentration or uneven distribution in these species. To determine the most effective way of transmitting the virus, different infection methods (by aphids, grafting, mechanical infection and injection) were tested using Dideron PPV isolates. The most effective method was the grafting of herbaceous material with inoculum derived from similar herbaceous material. Infection by aphids was more laborious and less effective than grafting, showing many disadvantages. Neither mechanical infection nor injection transmitted the virus.
- Published
- 2000
24. Localization of Plum pox virus in stem and petiole tissues of apricot cultivars by immuno-tissue printing.
- Author
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Dicenta F, Martínez-Gómez P, Bellanger I, and Audergon JM
- Subjects
- Immunologic Techniques, Peroxidase, Plant Shoots anatomy & histology, Plant Shoots virology, Staining and Labeling, Plant Diseases virology, Plum Pox Virus isolation & purification, Rosales virology
- Abstract
Localization of Plum pox virus (PPV) in stem and petiole tissues of four susceptible and four resistant apricot cultivars has been studied. Consecutive 1-mm spaced transverse sections were taken from the tissues and were printed onto nitrocellulose membrane in duplicate. For virus-specific detection, one series of prints was probed with an antibody to PPV coat and the density of stains was evaluated by light microscopy. Another series of prints was treated with a substrate but not with the antibody to reveal non-specific staining due to endogenous peroxidases. The virus was currently detected in all inoculated susceptible cultivars but only in one inoculated resistant cultivar (Harcot). In the stem tissues, the virus was localized in the pith and in the xylem. In the petiole tissues, it was localized in the epidermis and in cortical and medullae parenchyma. Non-specific staining was observed only in the stem sclerenchyma and in the petiole phloem.
- Published
- 2000
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