37,265 results on '"Aubry, A."'
Search Results
2. Differential uniformity of polynomials of degree 10
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Aubry, Yves
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Mathematics - Number Theory - Abstract
We prove that polynomials of degree 10 over finite fields of even characteristic with some conditions on theirs coefficients have a differential uniformity greater than or equal to 6 over $\mathbb{F}_{2^n}$ for all $n$ sufficiently large.
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- 2024
3. Renormalisation in maximally symmetric spaces and semiclassical gravity in Anti-de Sitter spacetime
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Juárez-Aubry, Benito A. and Mamani-Leqque, Milton C.
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General Relativity and Quantum Cosmology ,High Energy Physics - Theory - Abstract
We obtain semiclassical gravity solutions in the Poincar\'e fundamental domain of $(3+1)$-dimensional Anti-de Sitter spacetime, PAdS$_4$, with a (massive or massless) Klein-Gordon field (with possibly non-trivial curvature coupling) with Dirichlet or Neumann boundary. Some results are explicitly and graphically presented for special values of the mass and curvature coupling (e.g. minimal or conformal coupling). In order to achieve this, we study in some generality how to perform the Hadamard renormalisation procedure for non-linear observables in maximally symmetric spacetimes in arbitrary dimensions, with emphasis on the stress-energy tensor. We show that, in this maximally symmetric setting, the Hadamard bi-distribution is invariant under the isometries of the spacetime, and can be seen as a `single-argument' distribution depending only on the geodesic distance, which significantly simplifies the Hadamard recursion relations and renormalisation computations., Comment: 16 pages, 2 figures
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- 2024
4. Ultrasound matrix imaging for transcranial in-vivo localization microscopy
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Bureau, Flavien, Denis, Louise, Coudert, Antoine, Fink, Mathias, Couture, Olivier, and Aubry, Alexandre
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Physics - Medical Physics ,Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Applied Physics - Abstract
Transcranial ultrasound imaging is usually limited by skull-induced attenuation and high-order aberrations. By using contrast agents such as microbubbles in combination with ultrafast imaging, not only can the signal-to-noise ratio be improved, but super-resolution images down to the micrometer scale of the brain vessels can be obtained. However, ultrasound localization microscopy (ULM) remains impacted by wave-front distortions that limit the microbubble detection rate and hamper their localization. In this work, we show how matrix imaging, which relies on the prior recording of the reflection matrix, can provide a solution to those fundamental issues. As an experimental proof-of-concept, an in-vivo reconstruction of deep brain microvessels is performed on three anesthetized sheeps. The compensation of wave distortions is shown to drastically enhance the contrast and resolution of ULM. This experimental study thus opens up promising perspectives for a transcranial and non-ionizing observation of human cerebral microvascular pathologies, such as stroke., Comment: 43 pages, 11 figures, 3 tables
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- 2024
5. Optical matrix imaging applied to embryology
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Barolle, Victor, Bureau, Flavien, Guigui, Nicolas, Balondrade, Paul, Brochard, Vincent, Dubois, Olivier, Jouneau, Alice, Bonnet-Garnier, Amélie, and Aubry, Alexandre
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Physics - Optics ,Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Medical Physics - Abstract
High-resolution label-free imaging of oocytes and embryos is essential for in vitro fertilization procedures. Yet conventional microscopy fails in this task because of aberrations and multiple scattering induced by refractive index heterogeneities inside the sample. These detrimental phenomena drastically degrade the images of early embryos particularly in depth. To overcome these fundamental problems without sacrificing the frame rate, optical matrix imaging (OMI) is a suitable tool. Relying on an ultra-fast measurement of the reflection matrix associated with the sample, it can compensate for aberration and forward multiple scattering in post-processing, thereby providing three-dimensional and highly contrasted images of embryos at a confocal resolution. As a first proof-of-concept, bovine oocytes and embryos are imaged at a 300 nm resolution almost in real time. Our system enables visualization of intracellular structures such as lipids and mitochondria in the cytoplasm or the zona pellucida surrounding it. Altogether, we demonstrate that OMI is a promising tool for research in developmental biology and for time-lapse monitoring of oocytes and embryos in assisted reproduction., Comment: 18 pages, 6 figures
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- 2024
6. General Detection-based Text Line Recognition
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Baena, Raphael, Kalleli, Syrine, and Aubry, Mathieu
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Computer Science - Computer Vision and Pattern Recognition - Abstract
We introduce a general detection-based approach to text line recognition, be it printed (OCR) or handwritten (HTR), with Latin, Chinese, or ciphered characters. Detection-based approaches have until now been largely discarded for HTR because reading characters separately is often challenging, and character-level annotation is difficult and expensive. We overcome these challenges thanks to three main insights: (i) synthetic pre-training with sufficiently diverse data enables learning reasonable character localization for any script; (ii) modern transformer-based detectors can jointly detect a large number of instances, and, if trained with an adequate masking strategy, leverage consistency between the different detections; (iii) once a pre-trained detection model with approximate character localization is available, it is possible to fine-tune it with line-level annotation on real data, even with a different alphabet. Our approach, dubbed DTLR, builds on a completely different paradigm than state-of-the-art HTR methods, which rely on autoregressive decoding, predicting character values one by one, while we treat a complete line in parallel. Remarkably, we demonstrate good performance on a large range of scripts, usually tackled with specialized approaches. In particular, we improve state-of-the-art performances for Chinese script recognition on the CASIA v2 dataset, and for cipher recognition on the Borg and Copiale datasets. Our code and models are available at https://github.com/raphael-baena/DTLR.
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- 2024
7. Reflection Matrix Imaging for Wave Velocity Tomography
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Bureau, Flavien, Giraudat, Elsa, Ber, Arthur Le, Lambert, William, Carmier, Louis, Guibal, Aymeric, Fink, Mathias, and Aubry, Alexandre
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Physics - Medical Physics ,Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Applied Physics - Abstract
Besides controlling wave trajectory inside complex media, wave velocity constitutes a relevant bio-marker for medical imaging. In a transmission configuration, wave-front distortions can be unscrambled to provide a map of the wave velocity landscape $c(\mathbf{r})$. However, most in-vivo applications correspond to a reflection configuration for which only back-scattered echoes generated by short-scale fluctuations of $c(\mathbf{r})$ can be harvested. Under a single scattering assumption, this speckle wave-field cannot provide the long-scale variations of $c(\mathbf{r})$. In this paper, we go beyond the first Born approximation and show how a map of $c(\mathbf{r})$ can be retrieved in epi-detection. To that aim, a reflection matrix approach of wave imaging is adopted. While standard reflection imaging methods generally rely on confocal focusing operations, matrix imaging consists in decoupling the location of the incident and received focal spots. Following this principle, a self-portrait of the focusing process can be obtained around each point of the medium. The Gouy phase shift exhibited by each focal spot is leveraged to finely monitor the wave velocity distribution $c(\mathbf{r})$ inside the medium. Experiment in a tissue-mimicking phantom and numerical simulations are first presented to validate our method. Speed-of-sound tomography is then applied to ultrasound data collected on the liver of a difficult-to-image patient. Beyond paving the way towards quantitative ultrasound, our approach can also be extremely rewarding for standard imaging. Indeed, each echo can be assigned to the actual position of a scatterer. It allows an absolute measurement of distance, an observable often used for diagnosis but generally extremely sensitive to wave velocity fluctuations., Comment: 45 pages, 9 figures, 3 tables
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- 2024
8. Detecting Looted Archaeological Sites from Satellite Image Time Series
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Vincent, Elliot, Saroufim, Mehraïl, Chemla, Jonathan, Ubelmann, Yves, Marquis, Philippe, Ponce, Jean, and Aubry, Mathieu
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Archaeological sites are the physical remains of past human activity and one of the main sources of information about past societies and cultures. However, they are also the target of malevolent human actions, especially in countries having experienced inner turmoil and conflicts. Because monitoring these sites from space is a key step towards their preservation, we introduce the DAFA Looted Sites dataset, \datasetname, a labeled multi-temporal remote sensing dataset containing 55,480 images acquired monthly over 8 years across 675 Afghan archaeological sites, including 135 sites looted during the acquisition period. \datasetname~is particularly challenging because of the limited number of training samples, the class imbalance, the weak binary annotations only available at the level of the time series, and the subtlety of relevant changes coupled with important irrelevant ones over a long time period. It is also an interesting playground to assess the performance of satellite image time series (SITS) classification methods on a real and important use case. We evaluate a large set of baselines, outline the substantial benefits of using foundation models and show the additional boost that can be provided by using complete time series instead of using a single image.
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- 2024
9. An Interpretable Deep Learning Approach for Morphological Script Type Analysis
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Vlachou-Efstathiou, Malamatenia, Siglidis, Ioannis, Stutzmann, Dominique, and Aubry, Mathieu
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Defining script types and establishing classification criteria for medieval handwriting is a central aspect of palaeographical analysis. However, existing typologies often encounter methodological challenges, such as descriptive limitations and subjective criteria. We propose an interpretable deep learning-based approach to morphological script type analysis, which enables systematic and objective analysis and contributes to bridging the gap between qualitative observations and quantitative measurements. More precisely, we adapt a deep instance segmentation method to learn comparable character prototypes, representative of letter morphology, and provide qualitative and quantitative tools for their comparison and analysis. We demonstrate our approach by applying it to the Textualis Formata script type and its two subtypes formalized by A. Derolez: Northern and Southern Textualis, Comment: Accepted at ICDAR 2024 Workshop on Computational Paleography (IWCP, 31 August - Athens, Greece)
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- 2024
10. Magazine Supply Optimization: a Case-study
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Nguyen, Duong, Ulianovici, Ana, Achour, Sami, Aubry, Soline, and Chesneau, Nicolas
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Computer Science - Artificial Intelligence ,Mathematics - Optimization and Control - Abstract
Supply optimization is a complex and challenging task in the magazine retail industry because of the fixed inventory assumption, irregular sales patterns, and varying product and point-of-sale characteristics. We introduce AthenIA, an industrialized magazine supply optimization solution that plans the supply for over 20,000 points of sale in France. We modularize the supply planning process into a four-step pipeline: demand sensing, optimization, business rules, and operating. The core of the solution is a novel group conformalized quantile regression method that integrates domain expert insights, coupled with a supply optimization technique that balances the costs of out-of-stock against the costs of over-supply. AthenIA has proven to be a valuable tool for magazine publishers, particularly in the context of evolving economic and ecological challenges.
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- 2024
11. Historical Printed Ornaments: Dataset and Tasks
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Chaki, Sayan Kumar, Baltaci, Zeynep Sonat, Vincent, Elliot, Emonet, Remi, Vial-Bonacci, Fabienne, Bahier-Porte, Christelle, Aubry, Mathieu, and Fournel, Thierry
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Computer Science - Computer Vision and Pattern Recognition - Abstract
This paper aims to develop the study of historical printed ornaments with modern unsupervised computer vision. We highlight three complex tasks that are of critical interest to book historians: clustering, element discovery, and unsupervised change localization. For each of these tasks, we introduce an evaluation benchmark, and we adapt and evaluate state-of-the-art models. Our Rey's Ornaments dataset is designed to be a representative example of a set of ornaments historians would be interested in. It focuses on an XVIIIth century bookseller, Marc-Michel Rey, providing a consistent set of ornaments with a wide diversity and representative challenges. Our results highlight the limitations of state-of-the-art models when faced with real data and show simple baselines such as k-means or congealing can outperform more sophisticated approaches on such data. Our dataset and code can be found at https://printed-ornaments.github.io/.
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- 2024
12. Targeted energy transfer dynamics and chemical reactions
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Almazova, N., Aubry, S., and Tsironis, G. P.
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Physics - Chemical Physics - Abstract
Ultrafast reaction processes take place when resonant features of nonlinear model systems are taken into account. In the targeted energy or electron transfer dimer model this is accomplished through the implementation of nonlinear oscillators with opposing types of nonlinearities, one attractive while the second repulsive. In the present work we show that this resonant behavior survives if we take into account the vibrational degrees of freedom as well. After giving a summary on the basic formalism of chemical reactions we show that resonant electron transfer can be assisted by vibrations. We find the condition for this efficient transfer and show that in the case of additional interaction with noise a distinct non-Arrhenius behavior develops that is markedly different from the usual Kramers-like activated transfer.
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- 2024
13. Diffusion Models as Data Mining Tools
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Siglidis, Ioannis, Holynski, Aleksander, Efros, Alexei A., Aubry, Mathieu, and Ginosar, Shiry
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
This paper demonstrates how to use generative models trained for image synthesis as tools for visual data mining. Our insight is that since contemporary generative models learn an accurate representation of their training data, we can use them to summarize the data by mining for visual patterns. Concretely, we show that after finetuning conditional diffusion models to synthesize images from a specific dataset, we can use these models to define a typicality measure on that dataset. This measure assesses how typical visual elements are for different data labels, such as geographic location, time stamps, semantic labels, or even the presence of a disease. This analysis-by-synthesis approach to data mining has two key advantages. First, it scales much better than traditional correspondence-based approaches since it does not require explicitly comparing all pairs of visual elements. Second, while most previous works on visual data mining focus on a single dataset, our approach works on diverse datasets in terms of content and scale, including a historical car dataset, a historical face dataset, a large worldwide street-view dataset, and an even larger scene dataset. Furthermore, our approach allows for translating visual elements across class labels and analyzing consistent changes., Comment: Project Page: https://diff-mining.github.io/ Accepted in ECCV 2024
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- 2024
14. Transformer Block Coupling and its Correlation with Generalization in LLMs
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Aubry, Murdock, Meng, Haoming, Sugolov, Anton, and Papyan, Vardan
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computation and Language - Abstract
Large Language Models (LLMs) have made significant strides in natural language processing, and a precise understanding of the internal mechanisms driving their success is essential. In this work, we trace the trajectories of individual tokens as they pass through transformer blocks, and linearize the system along these trajectories through their Jacobian matrices. By examining the relationships between these Jacobians, we uncover a $\textbf{transformer block coupling}$ phenomenon in a variety of LLMs, characterized by the coupling of their top singular vectors across tokens and depth. Our findings reveal that coupling $\textit{positively correlates}$ with model performance, and that this relationship is stronger than with other hyperparameters, namely parameter budget, model depth, and embedding dimension. We further investigate the emergence of these properties through training, noting the development of coupling, as well as an increase in linearity and layer-wise exponential growth in the token trajectories. These collective insights provide a novel perspective on the interactions between token embeddings, and prompt further approaches to study training and generalization in LLMs.
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- 2024
15. Satellite Image Time Series Semantic Change Detection: Novel Architecture and Analysis of Domain Shift
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Vincent, Elliot, Ponce, Jean, and Aubry, Mathieu
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Satellite imagery plays a crucial role in monitoring changes happening on Earth's surface and aiding in climate analysis, ecosystem assessment, and disaster response. In this paper, we tackle semantic change detection with satellite image time series (SITS-SCD) which encompasses both change detection and semantic segmentation tasks. We propose a new architecture that improves over the state of the art, scales better with the number of parameters, and leverages long-term temporal information. However, for practical use cases, models need to adapt to spatial and temporal shifts, which remains a challenge. We investigate the impact of temporal and spatial shifts separately on global, multi-year SITS datasets using DynamicEarthNet and MUDS. We show that the spatial domain shift represents the most complex setting and that the impact of temporal shift on performance is more pronounced on change detection than on semantic segmentation, highlighting that it is a specific issue deserving further attention.
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- 2024
16. The Hadamard condition on a Cauchy surface and the renormalized stress-energy tensor
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Juárez-Aubry, Benito A., Kay, Bernard S., Miramontes, Tonatiuh, and Sudarsky, Daniel
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General Relativity and Quantum Cosmology ,High Energy Physics - Theory ,Mathematical Physics - Abstract
Given a Cauchy surface in a curved spacetime and a suitably defined quantum state on the CCR algebra of the Klein-Gordon quantum field on that surface, we show, by expanding the squared spacetime geodesic distance and the `$U$' and `$V$' Hadamard coefficients (and suitable derivatives thereof) in sufficiently accurate covariant Taylor expansions on the surface that the renormalized expectation value of the quantum stress-energy tensor on the surface is determined by the geometry of the surface and the first 4 time derivatives of the metric off the surface, in addition to the Cauchy data for the field's two-point function. This result has been anticipated in and is motivated by a previous investigation by the authors on the initial value problem in semiclassical gravity, for which the geometric initial data corresponds {\it a priori} to the metric on the surface and up to 3 time derivatives off the surface, but where it was argued that the fourth derivative can be obtained with aid of the field equations on the initial surface., Comment: 65 pages, discussion improved
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- 2024
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17. BEAST DB: Grand-Canonical Database of Electrocatalyst Properties
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Tezak, Cooper, Clary, Jacob, Gerits, Sophie, Quinton, Joshua, Rich, Benjamin, Singstock, Nicholas, Alherz, Abdulaziz, Aubry, Taylor, Clark, Struan, Hurst, Rachel, Del Ben, Mauro, Sutton, Christopher, Sundararaman, Ravishankar, Musgrave, Charles, and Vigil-Fowler, Derek
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We present BEAST DB, an open-source database comprised of ab initio electrochemical data computed using grand-canonical density functional theory in implicit solvent at consistent calculation parameters. The database contains over 20,000 surface calculations and covers a broad set of heterogeneous catalyst materials and electrochemical reactions. Calculations were performed at self-consistent fixed potential as well as constant charge to facilitate comparisons to the computational hydrogen electrode. This article presents common use cases of the database to rationalize trends in catalyst activity, screen catalyst material spaces, understand elementary mechanistic steps, analyze electronic structure, and train machine learning models to predict higher fidelity properties. Users can interact graphically with the database by querying for individual calculations to gain granular understanding of reaction steps or by querying for an entire reaction pathway on a given material using an interactive reaction pathway tool. BEAST DB will be periodically updated, with planned future updates to include advanced electronic structure data, surface speciation studies, and greater reaction coverage., Comment: 24 pages, 8 figures
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- 2024
18. The THINICE Field Campaign: Interactions between Arctic Cyclones, Tropopause Polar Vortices, Clouds, and Sea Ice in Summer
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Riviere, Gwendal, Delanoe, Julien, Doyle, James D., Methven, John, Barrell, Chris, Fearon, Matthew, Gray, Suzanne, Johnson, Aaron, Jourdan, Olivier, Lachlan-Cope, Tom, Renfrew, Ian, Torn, Ryan D., Volonte, Ambrogio, Weiss, Alexandra, Wimmer, Meryl, Aubry, Clemantyne, Baudoux, Antoine, Bazile, Eric, Beeden, Daniel, Bennett, Miriam, Biernat, Kevin, Bitz, Cecilia M., Blanchard- Wrigglesworth, Edward, Bounissou, Sophie, Bray, Matthew, Burg, Tomer, Burzdak, Joseph, Businger, Steven, Capute, Peyton, Caudoux, Christophe, Cavallo, Steven, Cossalter, Laure, Cozzolino, Capucine, Croad, Elannah, Douet, Vincent, Elvidge, Andrew, Finocchio, Peter, Gourbeyre, Christophe, Harvey, Ben, Eluet, Kevin, Hutchinson, Todd, Ladkin, Russ, Marshland, Kai, Martinez-Alvarado, Oscar, Mioche, Guillaume, Pantillon, Florian, Paquette, Cameron, Parsons, David B., Persson, Ola, Raillard, Lea, Raut, Jean-Christophe, Seity, Yann, Trules, Jeremie, Vignon, Etienne, and Wang, Xuguang
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Clouds -- Models ,Surface-ice melting -- Environmental aspects ,Sea ice -- Models ,Climatic changes -- Influence ,Ocean-atmosphere interaction -- Models ,Business ,Earth sciences - Abstract
The THINICE field campaign, based in Svalbard in August 2022, provided unique observations of summertime Arctic cyclones, their coupling with cloud cover, and their interactions with tropopause polar vortices and sea ice conditions. THINICE was motivated by the need to advance our understanding of these processes and to improve coupled models used to forecast weather and sea ice, as well as long-term projections of climate change in the Arctic. Two research aircraft were deployed with complementary instrumentation. The Service des Avions Frangais Instruments pour la Recherche en Environnement (Safire) Aerei da Trasporto Regionale 42 (ATR42) aircraft, equipped with the radar-lidar (RALI) remote sensing instrumentation and in situ cloud microphysics probes, flew in the midtroposphere to observe the wind and multiphase cloud structure of Arctic cyclones. The British Antarctic Survey Meteorological Airborne Science Instrumentation (MASIN) aircraft flew at low levels measuring sea ice properties, including surface brightness temperature, albedo and roughness, and the turbulent fluxes that mediate exchange of heat and momentum between the atmosphere and the surface. Long-duration instrumented balloons, operated by WindBorne Systems, sampled meteorological conditions within both cyclones and tropospheric polar vortices across the Arctic. Several novel findings are highlighted. Intense, shallow low-level jets along warm fronts were observed within three Arctic cyclones using the Doppler radar and turbulence probes. A detailed depiction of the interweaving layers of ice crystals and supercooled liquid water in mixed-phase clouds is revealed through the synergistic combination of the Doppler radar, the lidar, and in situ microphysical probes. Measurements of near-surface turbulent fluxes combined with remote sensing measurements of sea ice properties are being used to characterize atmosphere-sea ice interactions in the marginal ice zone. SIGNIFICANCE STATEMENT: Arctic cyclones can span several thousand kilometers and last several weeks, bringing strong winds, clouds, and precipitation across the remote Arctic and affecting the sea ice through wind stress, surface energy budget, and snow cover. Therefore, they play a key role in Arctic weather and climate. Motivated by the need to improve the coupled environmental prediction, the representation of cyclones, and their influence on the rapidly changing Arctic climate, the THINICE field campaign intensively observed several Arctic cyclones in August 2022 by operating two aircraft and launching steerable balloons. Key measurements of fine-scale features within Arctic cyclones are highlighted including low-level jets along fronts, mixed-phase clouds containing multiple layers of supercooled water, boundary layer turbulent fluxes, and sea ice properties beneath the cyclones. The ability of state-of-the-art numerical models, with and without coupling to dynamic sea ice models, in representing these cases and coupled processes is the focus of the ongoing work with an aim to improve prediction capabilities. KEYWORDS: Atmosphere; Arctic; Sea ice; Clouds; Jets; Aircraft observations, 1. Introduction The rapidly changing Arctic climate is one of the most alarming signals of global warming as it is having stark impacts on vulnerable ecological systems and indigenous people, [...]
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- 2024
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19. Diffusion Models as Data Mining Tools
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Siglidis, Ioannis, Holynski, Aleksander, Efros, Alexei A., Aubry, Mathieu, Ginosar, Shiry, Goos, Gerhard, Series Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Leonardis, Aleš, editor, Ricci, Elisa, editor, Roth, Stefan, editor, Russakovsky, Olga, editor, Sattler, Torsten, editor, and Varol, Gül, editor
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- 2025
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20. Trinomials with high differential uniformity
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Aubry, Yves, Herbaut, Fabien, and Issa, Ali
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Mathematics - Number Theory - Abstract
The context of this work is the study of the differential uniformity of polynomials defined over finite fields of even characteristic. We provide infinite families of trinomials with high differential uniformity when the base field is large enough. It means in particular that these trinomials are not exceptional almost perfect nonlinear.
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- 2024
21. Historical Astronomical Diagrams Decomposition in Geometric Primitives
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Kalleli, Syrine, Trigg, Scott, Albouy, Ségolène, Husson, Mathieu, and Aubry, Mathieu
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Automatically extracting the geometric content from the hundreds of thousands of diagrams drawn in historical manuscripts would enable historians to study the diffusion of astronomical knowledge on a global scale. However, state-of-the-art vectorization methods, often designed to tackle modern data, are not adapted to the complexity and diversity of historical astronomical diagrams. Our contribution is thus twofold. First, we introduce a unique dataset of 303 astronomical diagrams from diverse traditions, ranging from the XIIth to the XVIIIth century, annotated with more than 3000 line segments, circles and arcs. Second, we develop a model that builds on DINO-DETR to enable the prediction of multiple geometric primitives. We show that it can be trained solely on synthetic data and accurately predict primitives on our challenging dataset. Our approach widely improves over the LETR baseline, which is restricted to lines, by introducing a meaningful parametrization for multiple primitives, jointly training for detection and parameter refinement, using deformable attention and training on rich synthetic data. Our dataset and code are available on our webpage., Comment: Code and dataset are available in http://imagine.enpc.fr/~kallelis/icdar2024/
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- 2024
22. ITRUSST Consensus on Standardised Reporting for Transcranial Ultrasound Stimulation
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Martin, Eleanor, Aubry, Jean-François, Schafer, Mark, Verhagen, Lennart, Treeby, Bradley, and Pauly, Kim Butts
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Physics - Medical Physics ,Physics - Biological Physics - Abstract
As transcranial ultrasound stimulation (TUS) advances as a precise, non-invasive neuromodulatory method, there is a need for consistent reporting standards to enable comparison and reproducibility across studies. To this end, the International Transcranial Ultrasonic Stimulation Safety and Standards Consortium (ITRUSST) formed a subcommittee of experts across several domains to review and suggest standardised reporting parameters for low intensity TUS, resulting in the guide presented here. The scope of the guide is limited to reporting the ultrasound aspects of a study. The guide and supplementary material provide a simple checklist covering the reporting of: (1) the transducer and drive system, (2) the drive system settings, (3) the free field acoustic parameters, (4) the pulse timing parameters, (5) \emph{in situ} estimates of exposure parameters in the brain, and (6) intensity parameters. Detailed explanations for each of the parameters, including discussions on assumptions, measurements, and calculations, are also provided., Comment: 23 pages, 4 figures, 4 tables, stand alone checklist
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- 2024
23. Maximum number of rational points on hypersurfaces in weighted projective spaces over finite fields
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Aubry, Yves and Perret, Marc
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Mathematics - Algebraic Geometry - Abstract
An upper bound for the maximum number of rational points on an hypersurface in a projective space over a finite field has been conjectured by Tsfasman and proved by Serre in 1989. The analogue question for hypersurfaces on weighted projective spaces has been considered by Castryck, Ghorpade, Lachaud, O'Sullivan, Ram and the first author in 2017. A conjecture has been proposed there and proved in the particular case of the dimension 2. We prove here the conjecture in any dimension provided the second weight is also equal to one.
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- 2024
24. Programmatic and Organizational Barriers and Facilitators to Addressing High-Risk Issues in Supportive Housing and Housing First Programs
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Kerman, Nick, de Pass, Timothy, Kidd, Sean A., Mutschler, Christina, Oudshoorn, Abe, Sylvestre, John, Aubry, Tim, Henwood, Benjamin F., Sirotich, Frank, and Stergiopoulos, Vicky
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- 2024
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25. Multi-spectral reflection matrix for ultrafast 3D label-free microscopy
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Balondrade, Paul, Barolle, Victor, Guigui, Nicolas, Auriant, Emeric, Rougier, Nathan, Boccara, Claude, Fink, Mathias, and Aubry, Alexandre
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- 2024
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26. Effect of competition intensity and neighbor identity on architectural traits of Fagus sylvatica
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Penanhoat, Alice, Guerrero Ramirez, Nathaly, Aubry-Kientz, Mélaine, Diekmann, Lucas, Paligi, Sharath, Audisio, Michela, Mrak, Klara, and Seidel, Dominik
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- 2024
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27. Changes in Sleep of Families After the Arrival of an Autism Service Dog
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Simard, Valérie, Aubry-Guzzi, Marie-Aude, Chapleau, Isabelle, Moënner, Marina, François, Nathe, and Champagne, Noël
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- 2024
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28. Reflection Measurement of the Scattering Mean Free Path at the Onset of Multiple Scattering
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Goïcoechea, Antton, Brütt, Cécile, Ber, Arthur Le, Bureau, Flavien, Lambert, William, Prada, Claire, Derode, Arnaud, and Aubry, Alexandre
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Physics - Medical Physics ,Condensed Matter - Disordered Systems and Neural Networks ,Physics - Applied Physics - Abstract
Multiple scattering of waves presents challenges for imaging complex media but offers potential for their characterization. Its onset is actually governed by the scattering mean free path $\ell_s$ that provides crucial information on the medium micro-architecture. Here, we introduce a reflection matrix method designed to estimate this parameter from the time decay of the single scattering rate. Our method is first validated by an ultrasound experiment on a tissue-mimicking phantom before being applied in-vivo to a human liver. This study opens important perspectives for quantitative imaging of heterogeneous media with waves, whether it be for non-destructive testing, biomedical or geophysical applications., Comment: 29 pages, 7 figures
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- 2024
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29. FocalPose++: Focal Length and Object Pose Estimation via Render and Compare
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Cífka, Martin, Ponimatkin, Georgy, Labbé, Yann, Russell, Bryan, Aubry, Mathieu, Petrik, Vladimir, and Sivic, Josef
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Computer Science - Computer Vision and Pattern Recognition - Abstract
We introduce FocalPose++, a neural render-and-compare method for jointly estimating the camera-object 6D pose and camera focal length given a single RGB input image depicting a known object. The contributions of this work are threefold. First, we derive a focal length update rule that extends an existing state-of-the-art render-and-compare 6D pose estimator to address the joint estimation task. Second, we investigate several different loss functions for jointly estimating the object pose and focal length. We find that a combination of direct focal length regression with a reprojection loss disentangling the contribution of translation, rotation, and focal length leads to improved results. Third, we explore the effect of different synthetic training data on the performance of our method. Specifically, we investigate different distributions used for sampling object's 6D pose and camera's focal length when rendering the synthetic images, and show that parametric distribution fitted on real training data works the best. We show results on three challenging benchmark datasets that depict known 3D models in uncontrolled settings. We demonstrate that our focal length and 6D pose estimates have lower error than the existing state-of-the-art methods., Comment: 25 pages, 22 figures. IEEE TPAMI, 2024. Extended version of the conference paper arXiv:2204.05145
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- 2023
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30. A solver for linear scalar ordinary differential equations whose running time is bounded independent of frequency
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Aubry, Murdock and Bremer, James
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Mathematics - Numerical Analysis - Abstract
When the eigenvalues of the coefficient matrix for a linear scalar ordinary differential equation are of large magnitude, its solutions exhibit complicated behaviour, such as high-frequency oscillations, rapid growth or rapid decay. The cost of representing such solutions using standard techniques grows with the magnitudes of the eigenvalues. As a consequence, the running times of most solvers for ordinary differential equations also grow with these eigenvalues. However, a large class of scalar ordinary differential equations with slowly-varying coefficients admit slowly-varying phase functions that can be represented at a cost which is bounded independent of the magnitudes of the eigenvalues of the corresponding coefficient matrix. Here, we introduce a numerical algorithm for constructing slowly-varying phase functions which represent the solutions of a linear scalar ordinary differential equation. Our method's running time depends on the complexity of the equation's coefficients, but is bounded independent of the magnitudes of the equation's eigenvalues. Once the phase functions have been constructed, essentially any reasonable initial or boundary value problem for the scalar equation can be easily solved. We present the results of numerical experiments showing that, despite its greater generality, our algorithm is competitive with state-of-the-art methods for solving highly-oscillatory second order differential equations. We also compare our method with Magnus-type exponential integrators and find that our approach is orders of magnitude faster in the high-frequency regime., Comment: arXiv admin note: text overlap with arXiv:2308.03288, arXiv:2309.13848
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- 2023
31. ITRUSST Consensus on Biophysical Safety for Transcranial Ultrasonic Stimulation
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Aubry, Jean-Francois, Attali, David, Schafer, Mark, Fouragnan, Elsa, Caskey, Charles, Chen, Robert, Darmani, Ghazaleh, Bubrick, Ellen J., Sallet, Jérôme, Butler, Christopher, Stagg, Charlotte, Klein-Flügge, Miriam, Yoo, Seung-Schik, Treeby, Brad, Verhagen, Lennart, and Pauly, Kim Butts
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Physics - Biological Physics ,Physics - Medical Physics - Abstract
Transcranial ultrasonic stimulation (TUS) is an emerging technology for non-invasive brain stimulation. In a series of meetings, the International Consortium for Transcranial Ultrasonic Stimulation Safety and Standards (ITRUSST) has established expert consensus on considerations for the biophysical safety of TUS, drawing upon the relevant diagnostic ultrasound literature and regulations. This report reflects a consensus expert opinion and can inform but not replace regulatory guidelines or official international standards. Their establishment by international and national commissions will follow expert consensus. Similarly, this consensus will inform but not replace ethical evaluation, which will consider aspects beyond biophysical safety relevant to burden, risk, and benefit, such as physiological effects and disease-specific interactions. Here, we assume the application of TUS to persons who are not at risk for thermal or mechanical damage, and without ultrasound contrast agents. In this context, we present a concise yet comprehensive set of levels for a nonsignificant risk of TUS application. For mechanical effects, it is safe if the mechanical index (MI) or the mechanical index for transcranial application (MItc) does not exceed 1.9. For thermal effects, it is safe if any of the following three levels are met: a temperature rise less than 2 C, a thermal dose less than 0.25 CEM43, or specific values of the thermal index (TI) for a given exposure time. We review literature relevant to our considerations and discuss limitations and future developments of our approach., Comment: ITRUSST consensus, 15 pages, 1 table, 1 figure
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- 2023
32. Unveiling the deep plumbing system of a volcano by a reflection matrix analysis of seismic noise
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Giraudat, Elsa, Burtin, Arnaud, Ber, Arthur Le, Fink, Mathias, Komorowski, Jean-Christophe, and Aubry, Alexandre
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Physics - Geophysics ,Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Applied Physics - Abstract
In geophysics, volcanoes are particularly difficult to image because of the multi-scale heterogeneities of fluids and rocks that compose them and their complex non-linear dynamics. By exploiting seismic noise recorded by a sparse array of geophones, we are able to reveal the magmatic and hydrothermal plumbing system of La Soufri\`ere volcano in Guadeloupe. Spatio-temporal cross-correlation of seismic noise actually provides the impulse responses between virtual geophones located inside the volcano. The resulting reflection matrix can be exploited to numerically perform an auto-focus of seismic waves on any reflector of the underground. An unprecedented view on the volcano's inner structure is obtained at a half-wavelength resolution. This innovative observable provides fundamental information for the conceptual modeling and high-resolution monitoring of volcanoes., Comment: 32 pages, 9 figures
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- 2023
33. Male and female behavioral variability and morphine response in C57BL/6J, DBA/2J, and their BXD progeny following chronic stress exposure
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Morel, Carole, Parise, Lyonna F., Van der Zee, Yentl Y., Issler, Orna, Cai, Min, Browne, Caleb J., Blando, Anthony, LeClair, Katherine B., Aubry, Antonio V., Haynes, Sherod, Williams, Robert W., Mulligan, Megan K., Russo, Scott J., Nestler, Eric J., and Han, Ming-Hu
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- 2024
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34. An HuR mutant, HuR-V225I, identified in adult T-cell Leukemia/Lymphoma, alters the pro-apoptotic function of HuR
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Colalillo, Bianca, Sali, Sujitha, Aldouhki, Ali H., Aubry, Isabelle, Di Marco, Sergio, Tremblay, Michel L., and Gallouzi, Imed E.
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- 2024
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35. CT imaging findings of invasive pulmonary fungal infections in hemato-oncologic children
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Alamo, Leonor, Ceppi, Francesco, Tenisch, Estelle, and Beigelman-Aubry, Catherine
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- 2024
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36. Lung function in adult patients with osteogenesis imperfecta: a cohort study
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Lenoir, Alexandra, Aubry-Rozier, Bérengère, Bregou, Aline, Gonzalez Rodriguez, Elena, Paquier, Célia, Tanniger, Joëlle, Faouzi, Mohamed, and Lazor, Romain
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- 2024
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37. Genetic connectivity of wolverines in western North America
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Day, Casey C., Landguth, Erin L., Sawaya, Michael A., Clevenger, Anthony P, Long, Robert A., Holden, Zachary A., Akins, Jocelyn R., Anderson, Robert B., Aubry, Keith B., Barrueto, Mirjam, Bjornlie, Nichole L., Copeland, Jeffrey P., Fisher, Jason T., Forshner, Anne, Gude, Justin A., Hausleitner, Doris, Heim, Nichole A., Heinemeyer, Kimberly S., Hubbs, Anne, Inman, Robert M., Jackson, Scott, Jokinen, Michael, Kluge, Nathan P., Kortello, Andrea, Lacroix, Deborah L., Lamar, Luke, Larson, Lisa I., Lewis, Jeffrey C., Lockman, Dave, Lucid, Michael K., MacKay, Paula, Magoun, Audrey J., McLellan, Michelle L., Moriarty, Katie M., Mosby, Cory E., Mowat, Garth, Nietvelt, Clifford G., Paetkau, David, Palm, Eric C., Paul, Kylie J.S., Pilgrim, Kristine L., Raley, Catherine M., Schwartz, Michael K., Scrafford, Matthew A., Squires, John R., Walker, Zachary J., Waller, John S., Weir, Richard D., and Zeller, Katherine A.
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- 2024
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38. Estimated frequency and economic burden of incident fragility fractures during 2023 in Mexico
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Carlos-Rivera, Fernando, Guzmán-Caniupan, Jorge Antonio, Camacho-Cordero, Luis Miguel, Aubry de Maraumont, Therese, and Soria-Suárez, Noe
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- 2024
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39. An extended database of annotated skylight polarization images covering a period of two months
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Poughon, Léo, Aubry, Vincent, Monnoyer, Jocelyn, Viollet, Stéphane, and Serres, Julien R
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- 2024
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40. Assessing the need for robotic surgery training in standard medical education: insights from medical students
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Vigran, Hannah J., Diaz, Sarah, Suryadevara, Abhijeet, Blair, Yooni, Aubry, Staci, and Reddy, Rishindra M.
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- 2024
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41. Gut microbiota drives colon cancer risk associated with diet: a comparative analysis of meat-based and pesco-vegetarian diets
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De Filippo, Carlotta, Chioccioli, Sofia, Meriggi, Niccolò, Troise, Antonio Dario, Vitali, Francesco, Mejia Monroy, Mariela, Özsezen, Serdar, Tortora, Katia, Balvay, Aurélie, Maudet, Claire, Naud, Nathalie, Fouché, Edwin, Buisson, Charline, Dupuy, Jacques, Bézirard, Valérie, Chevolleau, Sylvie, Tondereau, Valérie, Theodorou, Vassilia, Maslo, Claire, Aubry, Perrine, Etienne, Camille, Giovannelli, Lisa, Longo, Vincenzo, Scaloni, Andrea, Cavalieri, Duccio, Bouwman, Jildau, Pierre, Fabrice, Gérard, Philippe, Guéraud, Françoise, and Caderni, Giovanna
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- 2024
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42. Matrix imaging as a tool for high-resolution monitoring of deep volcanic plumbing systems with seismic noise
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Giraudat, Elsa, Burtin, Arnaud, Le Ber, Arthur, Fink, Mathias, Komorowski, Jean-Christophe, and Aubry, Alexandre
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- 2024
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43. When the first try fails: re-implementation of SIMPL in a general surgery residency
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Hsu, Phillip J., Wnuk, Gregory, Leininger, Lisa, Peterson, Samantha, Hughes, David T., Sandhu, Gurjit, Zwischenberger, Jay B., George, Brian C., and Aubry, Staci
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- 2024
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44. Harnessing forward multiple scattering for optical imaging deep inside an opaque medium
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Najar, Ulysse, Barolle, Victor, Balondrade, Paul, Fink, Mathias, Boccara, Claude, and Aubry, Alexandre
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- 2024
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45. Experiencing and enduring patient distress: the distress of palliative care patients and its emotional impact on physicians in training
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Tarot, Andréa, Pithon, Maxence, Ridley, Ashley, Guastella, Virginie, Plancon, Morgane, Aubry, Régis, Roussel, Helène Vaillant, and Maneval, Axelle
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- 2024
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46. PTPRS is a novel marker for early Tau pathology and synaptic integrity in Alzheimer’s disease
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Poirier, Alexandre, Picard, Cynthia, Labonté, Anne, Aubry, Isabelle, Auld, Daniel, Zetterberg, Henrik, Blennow, Kaj, Tremblay, Michel L., and Poirier, Judes
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- 2024
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47. Exploring the genetics of lithium response in bipolar disorders
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Herrera-Rivero, Marisol, Adli, Mazda, Akiyama, Kazufumi, Akula, Nirmala, Amare, Azmeraw T., Ardau, Raffaella, Arias, Bárbara, Aubry, Jean-Michel, Backlund, Lena, Bellivier, Frank, Benabarre, Antonio, Bengesser, Susanne, Bhattacharjee, Abesh Kumar, Biernacka, Joanna M., Birner, Armin, Cearns, Micah, Cervantes, Pablo, Chen, Hsi-Chung, Chillotti, Caterina, Cichon, Sven, Clark, Scott R., Colom, Francesc, Cruceanu, Cristiana, Czerski, Piotr M., Dalkner, Nina, Degenhardt, Franziska, Del Zompo, Maria, DePaulo, J. Raymond, Etain, Bruno, Falkai, Peter, Ferensztajn-Rochowiak, Ewa, Forstner, Andreas J., Frank, Josef, Frisén, Louise, Frye, Mark A., Fullerton, Janice M., Gallo, Carla, Gard, Sébastien, Garnham, Julie S., Goes, Fernando S., Grigoroiu-Serbanescu, Maria, Grof, Paul, Hashimoto, Ryota, Hasler, Roland, Hauser, Joanna, Heilbronner, Urs, Herms, Stefan, Hoffmann, Per, Hou, Liping, Hsu, Yi-Hsiang, Jamain, Stephane, Jiménez, Esther, Kahn, Jean-Pierre, Kassem, Layla, Kato, Tadafumi, Kelsoe, John, Kittel-Schneider, Sarah, Kuo, Po-Hsiu, Kusumi, Ichiro, König, Barbara, Laje, Gonzalo, Landén, Mikael, Lavebratt, Catharina, Leboyer, Marion, Leckband, Susan G., Maj, Mario, Manchia, Mirko, Marie-Claire, Cynthia, Martinsson, Lina, McCarthy, Michael J., McElroy, Susan L., Millischer, Vincent, Mitjans, Marina, Mondimore, Francis M., Monteleone, Palmiero, Nievergelt, Caroline M., Novák, Tomas, Nöthen, Markus M., O’Donovan, Claire, Ozaki, Norio, Papiol, Sergi, Pfennig, Andrea, Pisanu, Claudia, Potash, James B., Reif, Andreas, Reininghaus, Eva, Richard-Lepouriel, Hélène, Roberts, Gloria, Rouleau, Guy A., Rybakowski, Janusz K., Schalling, Martin, Schofield, Peter R., Schubert, Klaus Oliver, Schulte, Eva C., Schweizer, Barbara W., Severino, Giovanni, Shekhtman, Tatyana, Shilling, Paul D., Shimoda, Katzutaka, Simhandl, Christian, Slaney, Claire M., Squassina, Alessio, Stamm, Thomas, Stopkova, Pavla, Streit, Fabian, Tekola-Ayele, Fasil, Thalamuthu, Anbupalam, Tortorella, Alfonso, Turecki, Gustavo, Veeh, Julia, Vieta, Eduard, Viswanath, Biju, Witt, Stephanie H., Zandi, Peter P., Alda, Martin, Bauer, Michael, McMahon, Francis J., Mitchell, Philip B., Rietschel, Marcella, Schulze, Thomas G., and Baune, Bernhard T.
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- 2024
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48. Cardiac evaluation in amiodarone-induced thyroid dysfunction with suspected cardiac ischemia?: a case report and review of the literature
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Aubry, Yoann, Dosch, Michel, and Donath, Marc Y.
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- 2024
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49. Lithium response in bipolar disorder is associated with focal adhesion and PI3K-Akt networks: a multi-omics replication study
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Ou, Anna H., Rosenthal, Sara B., Adli, Mazda, Akiyama, Kazufumi, Akula, Nirmala, Alda, Martin, Amare, Azmeraw T., Ardau, Raffaella, Arias, Bárbara, Aubry, Jean-Michel, Backlund, Lena, Bauer, Michael, Baune, Bernhard T., Bellivier, Frank, Benabarre, Antonio, Bengesser, Susanne, Bhattacharjee, Abesh Kumar, Biernacka, Joanna M., Cervantes, Pablo, Chen, Guo-Bo, Chen, Hsi-Chung, Chillotti, Caterina, Cichon, Sven, Clark, Scott R., Colom, Francesc, Cousins, David A., Cruceanu, Cristiana, Czerski, Piotr M., Dantas, Clarissa R., Dayer, Alexandre, Del Zompo, Maria, Degenhardt, Franziska, DePaulo, J. Raymond, Étain, Bruno, Falkai, Peter, Fellendorf, Frederike Tabea, Ferensztajn-Rochowiak, Ewa, Forstner, Andreas J., Frisén, Louise, Frye, Mark A., Fullerton, Janice M., Gard, Sébastien, Garnham, Julie S., Goes, Fernando S., Grigoroiu-Serbanescu, Maria, Grof, Paul, Gruber, Oliver, Hashimoto, Ryota, Hauser, Joanna, Heilbronner, Urs, Herms, Stefan, Hoffmann, Per, Hofmann, Andrea, Hou, Liping, Jamain, Stephane, Jiménez, Esther, Kahn, Jean-Pierre, Kassem, Layla, Kato, Tadafumi, Kittel-Schneider, Sarah, König, Barbara, Kuo, Po-Hsiu, Kusumi, Ichiro, Lackner, Nina, Laje, Gonzalo, Landén, Mikael, Lavebratt, Catharina, Leboyer, Marion, Leckband, Susan G., Jaramillo, Carlos A. López, MacQueen, Glenda, Maj, Mario, Manchia, Mirko, Marie-Claire, Cynthia, Martinsson, Lina, Mattheisen, Manuel, McCarthy, Michael J., McElroy, Susan L., McMahon, Francis J., Mitchell, Philip B., Mitjans, Marina, Mondimore, Francis M., Monteleone, Palmiero, Nievergelt, Caroline M., Nöthen, Markus M., Novák, Tomas, Ösby, Urban, Ozaki, Norio, Papiol, Sergi, Perlis, Roy H., Pisanu, Claudia, Potash, James B., Pfennig, Andrea, Reich-Erkelenz, Daniela, Reif, Andreas, Reininghaus, Eva Z., Rietschel, Marcella, Rouleau, Guy A., Rybakowski, Janusz K., Schalling, Martin, Schofield, Peter R., Schubert, K. Oliver, Schulze, Thomas G., Schweizer, Barbara W., Seemüller, Florian, Severino, Giovanni, Shekhtman, Tatyana, Shilling, Paul D., Shimoda, Kazutaka, Simhandl, Christian, Slaney, Claire M., Squassina, Alessio, Stamm, Thomas, Stopkova, Pavla, Tighe, Sarah K., Tortorella, Alfonso, Turecki, Gustavo, Vieta, Eduard, Volkert, Julia, Witt, Stephanie, Wray, Naomi R., Wright, Adam, Young, L. Trevor, Zandi, Peter P., and Kelsoe, John R.
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- 2024
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50. 3D hierarchical aquaporin-like nanoporous graphene membrane with engineered tripartite nanochannels for efficient oil/water separation
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Hegab, Hanaa M., Elmekawy, Ahmed, Aubry, Cyril, Kallem, Parashuram, Wadi, Vijay S., Banat, Fawzi, and Hasan, Shadi W.
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- 2024
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