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1. Cell-free DNA for the detection of kidney allograft rejection

Author

Aubert, Olivier, Ursule-Dufait, Cindy, Brousse, Romain, Gueguen, Juliette, Racapé, Maud, Raynaud, Marc, Van Loon, Elisabet, Pagliazzi, Angelica, Huang, Edmund, Jordan, Stanley C., Chavin, Kenneth D., Gupta, Gaurav, Kumar, Dhiren, Alhamad, Tarek, Anand, Sanjiv, Sanchez-Garcia, Jorge, Abdalla, Basmah A., Hogan, Julien, Garro, Rouba, Dadhania, Darshana M., Jain, Pranjal, Mandelbrot, Didier A., Naesens, Maarten, Dandamudi, Raja, Dharnidharka, Vikas R., Anglicheau, Dany, Lefaucheur, Carmen, and Loupy, Alexandre

Published
2024
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2. A Machine Learning-Driven Virtual Biopsy System For Kidney Transplant Patients

Author

Yoo, Daniel, Divard, Gillian, Raynaud, Marc, Cohen, Aaron, Mone, Tom D., Rosenthal, John Thomas, Bentall, Andrew J., Stegall, Mark D., Naesens, Maarten, Zhang, Huanxi, Wang, Changxi, Gueguen, Juliette, Kamar, Nassim, Bouquegneau, Antoine, Batal, Ibrahim, Coley, Shana M., Gill, John S., Oppenheimer, Federico, De Sousa-Amorim, Erika, Kuypers, Dirk R. J., Durrbach, Antoine, Seron, Daniel, Rabant, Marion, Van Huyen, Jean-Paul Duong, Campbell, Patricia, Shojai, Soroush, Mengel, Michael, Bestard, Oriol, Basic-Jukic, Nikolina, Jurić, Ivana, Boor, Peter, Cornell, Lynn D., Alexander, Mariam P., Toby Coates, P., Legendre, Christophe, Reese, Peter P., Lefaucheur, Carmen, Aubert, Olivier, and Loupy, Alexandre

Published
2024
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3. Design, cohort profile and comparison of the KTD-Innov study: a prospective multidimensional biomarker validation study in kidney allograft rejection

Author

Goutaudier, Valentin, Sablik, Marta, Racapé, Maud, Rousseau, Olivia, Audry, Benoit, Kamar, Nassim, Raynaud, Marc, Aubert, Olivier, Charreau, Béatrice, Papuchon, Emmanuelle, Danger, Richard, Letertre, Laurence, Couzi, Lionel, Morelon, Emmanuel, Le Quintrec, Moglie, Taupin, Jean-Luc, Vicaut, Eric, Legendre, Christophe, Le Mai, Hoa, Potluri, Vishnu, Nguyen, Thi-Van-Ha, Azoury, Marie-Eliane, Pinheiro, Alice, Nouadje, Georges, Sonigo, Pierre, Anglicheau, Dany, Tieken, Ineke, Vogelaar, Serge, Jacquelinet, Christian, Reese, Peter, Gourraud, Pierre-Antoine, Brouard, Sophie, Lefaucheur, Carmen, and Loupy, Alexandre

Published
2024
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4. Decision Support to Crowdsourcing for Annotation and Transcription of Ancient Documents: The RECITAL Workshop

Author

Aubert, Olivier, Hervy, Benjamin, Raschia, Guillaume, and Rubellin, Françoise

Subjects
Computer Science - Computers and Society
Abstract

In the 18th century in Paris, only two public theatres could officially perform comedies: the Com{\'e}die-Fran{\c c}aise, and the Com{\'e}die-Italienne. The latter was much less well known. By studying a century of accounting registers, we aim to learn more about its successful plays, its actors, musicians, set designers, and all the small trades necessary for its operation, its administration, logistics and finances. To this end, we employ a mass of untapped and unpublished resources, the 27,544 pages of 63 daily registers available at the Biblioth{\`e}que Nationale de France (BnF). And we take a decidedly fresh look at emerging forms of creation and changes in the entertainmenteconomy. We developed the crowdsourcing platform RECITAL to collect and index the data from theregisters, following an emerging trend in Digital Humanities. RECITAL is built upon the ScribeAPI framework and it offers a fully-fledged web application to classify the pages, annotate with marks and tags, transcribe the indexed marks and even to verify the previous transcripts. We also describe a multi-level data model and to develop a series of monitoring anddecision tools to support crowdsourced data management up to their definitive form.

Published
2023

5. Instrumental genesis through interdisciplinary collaboration -- reflections on the emergence of a visualisation framework for video annotation data

Author

Aubert, Olivier, Scherer, Thomas, and Stratil, Jasper

Subjects
Computer Science - Computers and Society
Abstract

Instrumental genesis through interdisciplinary collaboration-reflections on the emergence of a visualisation framework for video annotation data XML This paper presents, discusses and reflects on the development of a visualization framework for the analysis of the temporal dynamics of audiovisual expressivity. The main focus lies on the instrumental genesis process (Rabardel 1995; Longchamp 2012)-a concept trying to express and analyze the co-evolution of instruments and the practices they make possible-underlying this development. It is described through the collaboration and communication processes between computer science scholars and humanities scholars in finding new ways of visualizing complex datasets for exploration and presentation in the realm of film-studies research. It draws on the outcome and concrete usage of the visualizations in publications and presentations of a research group, the AdAproject, that investigates the audiovisual rhetorics of affect in audiovisual media on the financial crisis (2007-). These film analyses are based on theoretical assumptions on the process of film-viewing, the relation of the viewer's perception and the temporally unfolding audiovisual images, and a methodical approach that draws on 'steps' in the research process such as segmentation, description and qualification, called eMAEX (Kappelhoff et al. 2011-2016) to reconstruct these experiential figurations (Bakels et al. 2020a, 2020b). The main focus of this paper is the process of iterative development of visualizations as interactive interfaces generated with the open-source software Advene, that were an integral part of the research process. In this regard, the timeline visualization is not only of interest for visual argumentation in (digital) humanities publications, but also for the creation of annotations as well as the exploration of this data. In the first part of the paper we describe this interdisciplinary collaboration as instrumental genesis on a general level-as an evolving and iterative process. In the second part we focus on the specific challenge of designing a visualization framework for the temporal dynamics of audiovisual aesthetics. Lastly we zoom out by reflecting on experiences and insights that might be of interest for the wider digital humanities community.

Published
2023

6. Banff 2022 Kidney Commentary: Reflections and Future Directions

Author

Rabant, Marion, Adam, Benjamin A., Aubert, Olivier, Böhmig, Georg A., Clahsen Van-Groningen, Marian, Cornell, Lynn D., de Vries, Aiko P.J., Huang, Edmund, Kozakowski, Nicolas, Perkowska-Ptasinska, Agnieszka, Riella, Leonardo V., Rosales, Ivy A., Schinstock, Carrie, Simmonds, Naomi, Thaunat, Olivier, and Willicombe, Michelle

Published
2024
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7. Evaluation of non-invasive biomarkers of kidney allograft rejection in a prospective multicenter unselected cohort study (EU-TRAIN)

Author

Goutaudier, Valentin, Danger, Richard, Catar, Rusan Ali, Racapé, Maud, Philippe, Aurélie, Elias, Michelle, Raynaud, Marc, Aubert, Olivier, Bouton, Didier, Girardin, François, Vicaut, Éric, Yaiche, Sarhan, Demotes, Jacques, Heidecke, Harald, Taupin, Jean-Luc, Randoux-Lebrun, Christine, Zaidan, Mohamad, Papuchon, Emmanuelle, Le Mai, Hoa, Nguyen, Thi-Van-Ha, Moreso, Francesc, Berney, Thierry, Villard, Jean, Legendre, Christophe, Dragun, Duska, Papalois, Vassilios, Potena, Luciano, Giral, Magali, Gourraud, Pierre-Antoine, Brouard, Sophie, Crespo, Elena, Halleck, Fabian, Budde, Klemens, Bestard, Oriol, Loupy, Alexandre, and Lefaucheur, Carmen

Published
2024
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10. Identification of liver transplant biopsy phenotypes associated with distinct liver biological markers and allograft survival

Author

Demir, Zeynep, Raynaud, Marc, Aubert, Olivier, Debray, Dominique, Sebagh, Mylène, Duong Van Huyen, Jean-Paul, Del Bello, Arnaud, Jolivet, Nicolas Congy, Paradis, Valérie, Durand, François, Muratot, Sophie, Lozach, Cécile, Chardot, Christophe, Francoz, Claire, Kamar, Nassim, Sarnacki, Sabine, Coilly, Audrey, Samuel, Didier, Vibert, Eric, Féray, Cyrille, Lefaucheur, Carmen, and Loupy, Alexandre

Published
2024
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11. The Banff 2022 Kidney Meeting Work Plan: Data-driven refinement of the Banff Classification for renal allografts

Author

Roufosse, Candice, Naesens, Maarten, Haas, Mark, Lefaucheur, Carmen, Mannon, Roslyn B., Afrouzian, Marjan, Alachkar, Nada, Aubert, Olivier, Bagnasco, Serena M., Batal, Ibrahim, Bellamy, Chris O.C., Broecker, Verena, Budde, Klemens, Clahsen-Van Groningen, Marian, Coley, Shana M., Cornell, Lynn D., Dadhania, Darshana, Demetris, Anthony J., Einecke, Gunilla, Farris, Alton B., Fogo, Agnes B., Friedewald, John, Gibson, Ian W., Horsfield, Catherine, Huang, Edmund, Husain, Syed A., Jackson, Annette M., Kers, Jesper, Kikić, Željko, Klein, Amanda, Kozakowski, Nicolas, Liapis, Helen, Mangiola, Massima, Montgomery, Robert A., Nankinvell, Brian, Neil, Desley A.H., Nickerson, Peter, Rabant, Marion, Randhawa, Parmjeet, Riella, Leonardo V., Rosales, Ivy, Royal, Virginie, Sapir-Pichhadze, Ruth, Sarder, Pinaki, Sarwal, Minnie, Schinstock, Carrie, Stegall, Mark, Solez, Kim, van der Laak, Jeroen, Wiebe, Chris, Colvin, Robert B., Loupy, Alexandre, and Mengel, Michael

Published
2024
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12. The Banff 2022 Kidney Meeting Report: Reappraisal of microvascular inflammation and the role of biopsy-based transcript diagnostics

Author

Naesens, Maarten, Roufosse, Candice, Haas, Mark, Lefaucheur, Carmen, Mannon, Roslyn B., Adam, Benjamin A., Aubert, Olivier, Böhmig, Georg A., Callemeyn, Jasper, Clahsen-van Groningen, Marian, Cornell, Lynn D., Demetris, Anthony J., Drachenberg, Cinthia B., Einecke, Gunilla, Fogo, Agnes B., Gibson, Ian W., Halloran, Philip, Hidalgo, Luis G., Horsfield, Catherine, Huang, Edmund, Kikić, Željko, Kozakowski, Nicolas, Nankivell, Brian, Rabant, Marion, Randhawa, Parmjeet, Riella, Leonardo V., Sapir-Pichhadze, Ruth, Schinstock, Carrie, Solez, Kim, Tambur, Anat R., Thaunat, Olivier, Wiebe, Chris, Zielinski, Dina, Colvin, Robert, Loupy, Alexandre, and Mengel, Michael

Published
2024
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14. Success Prediction in MOOCs: A Case Study

Author

Pigeau, Antoine, Aubert, Olivier, and Prié, Yannick

Abstract

Success prediction in Massive Open Online Courses (MOOCs) is now tackled in numerous works, but still needs new case studies to compare the solutions proposed. We study here a specific dataset from a French MOOC provided by the OpenClassrooms company, featuring 12 courses. We exploit various features present in the literature and test several classification models. [For the full proceedings, see ED599096.]

Published
2019

15. An automated histological classification system for precision diagnostics of kidney allografts

Author

Yoo, Daniel, Goutaudier, Valentin, Divard, Gillian, Gueguen, Juliette, Astor, Brad C., Aubert, Olivier, Raynaud, Marc, Demir, Zeynep, Hogan, Julien, Weng, Patricia, Smith, Jodi, Garro, Rouba, Warady, Bradley A., Zahr, Rima S., Sablik, Marta, Twombley, Katherine, Couzi, Lionel, Berney, Thierry, Boyer, Olivia, Duong-Van-Huyen, Jean-Paul, Giral, Magali, Alsadi, Alaa, Gourraud, Pierre A., Morelon, Emmanuel, Le Quintrec, Moglie, Brouard, Sophie, Legendre, Christophe, Anglicheau, Dany, Villard, Jean, Zhong, Weixiong, Kamar, Nassim, Bestard, Oriol, Djamali, Arjang, Budde, Klemens, Haas, Mark, Lefaucheur, Carmen, Rabant, Marion, and Loupy, Alexandre

Published
2023
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16. Prognostic Biomarkers in Kidney Transplantation: A Systematic Review and Critical Appraisal

Author

Raynaud, Marc, Al-Awadhi, Solaf, Louis, Kevin, Zhang, Huanxi, Su, Xiaojun, Goutaudier, Valentin, Wang, Jiali, Demir, Zeynep, Wei, Yongcheng, Truchot, Agathe, Bouquegneau, Antoine, Del Bello, Arnaud, Bailly, Élodie, Lombardi, Yannis, Maanaoui, Mehdi, Giarraputo, Alessia, Naser, Sofia, Divard, Gillian, Aubert, Olivier, Murad, Mohammad Hassan, Wang, Changxi, Liu, Longshan, Bestard, Oriol, Naesens, Maarten, Friedewald, John J., Lefaucheur, Carmen, Riella, Leonardo, Collins, Gary, Ioannidis, John P.A., and Loupy, Alexandre

Published
2024
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17. Subclinical rejection-free diagnostic after kidney transplantation using blood gene expression

Author

Badet, Lionel, Brunet, Maria, Buron, Fanny, Cahen, Rémi, Codas, Ricardo, Daoud, Sameh, Dubois, Valérie, Fournie, Coralie, Gaillard, François, Grégoire, Arnaud, Koenig, Alice, Lévi, Charlène, Morelon, Emmanuel, Pouteil-Noble, Claire, Rabeyrin, Maud, Rimmelé, Thomas, Thaunat, Olivier, Blancho, Gilles, Branchereau, Julien, Cantarovich, Diego, Chapelet, Agnès, Dantal, Jacques, Deltombe, Clément, Figueres, Lucile, Gaisne, Raphael, Garandeau, Claire, Giral, Magali, Gourraud-Vercel, Caroline, Hourmant, Maryvonne, Karam, Georges, Kerleau, Clarisse, Kervella, Delphine, Masset, Christophe, Meurette, Aurélie, Ville, Simon, Kandell, Christine, Moreau, Anne, Renaudin, Karine, Delbos, Florent, Walencik, Alexandre, Devis, Anne, Amrouche, Lucile, Anglicheau, Dany, Aubert, Olivier, Bererhi, Lynda, Legendre, Christophe, Loupy, Alexandre, Martinez, Frank, Méjean, Arnaud, Sberro-Soussan, Rébecca, Scemla, Anne, Timsit, Marc-Olivier, Zuber, Julien, Danger, Richard, Le Berre, Ludmilla, Cadoux, Marion, Papuchon, Emmanuelle, Mai, Hoa Le, Nguyen, Thi-Van-Ha, Guérif, Pierrick, Lefaucheur, Carmen, Couzi, Lionel, Del Bello, Arnaud, Kamar, Nassim, Le Quintrec, Moglie, Goutaudier, Valentin, and Brouard, Sophie

Published
2023
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18. Machine learning does not outperform traditional statistical modelling for kidney allograft failure prediction

Author

Truchot, Agathe, Raynaud, Marc, Kamar, Nassim, Naesens, Maarten, Legendre, Christophe, Delahousse, Michel, Thaunat, Olivier, Buchler, Matthias, Crespo, Marta, Linhares, Kamilla, Orandi, Babak J., Akalin, Enver, Pujol, Gervacio Soler, Silva, Helio Tedesco, Jr., Gupta, Gaurav, Segev, Dorry L., Jouven, Xavier, Bentall, Andrew J., Stegall, Mark D., Lefaucheur, Carmen, Aubert, Olivier, and Loupy, Alexandre

Published
2023
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19. Designing LADs That Promote Sensemaking: A Participatory Tool

Author

Sadallah, Madjid, Gilliot, Jean-Marie, Iksal, Sébastien, Quelennec, Katia, Vermeulen, Mathieu, Neyssensas, Laurent, Aubert, Olivier, Venant, Rémi, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Hilliger, Isabel, editor, Muñoz-Merino, Pedro J., editor, De Laet, Tinne, editor, Ortega-Arranz, Alejandro, editor, and Farrell, Tracie, editor

Published
2022
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21. Comparison of artificial intelligence and human-based prediction and stratification of the risk of long-term kidney allograft failure

Author

Divard, Gillian, Raynaud, Marc, Tatapudi, Vasishta S., Abdalla, Basmah, Bailly, Elodie, Assayag, Maureen, Binois, Yannick, Cohen, Raphael, Zhang, Huanxi, Ulloa, Camillo, Linhares, Kamila, Tedesco, Helio S., Legendre, Christophe, Jouven, Xavier, Montgomery, Robert A., Lefaucheur, Carmen, Aubert, Olivier, and Loupy, Alexandre

Published
2022
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22. Complement-activating donor-specific anti-HLA antibodies and solid organ transplant survival: A systematic review and meta-analysis.

Author

Bouquegneau, Antoine, Loheac, Charlotte, Aubert, Olivier, Bouatou, Yassine, Viglietti, Denis, Empana, Jean-Philippe, Ulloa, Camilo, Murad, Mohammad Hassan, Legendre, Christophe, Glotz, Denis, Jackson, Annette M, Zeevi, Adriana, Schaub, Stephan, Taupin, Jean-Luc, Reed, Elaine F, Friedewald, John J, Tyan, Dolly B, Süsal, Caner, Shapiro, Ron, Woodle, E Steve, Hidalgo, Luis G, O'Leary, Jacqueline, Montgomery, Robert A, Kobashigawa, Jon, Jouven, Xavier, Jabre, Patricia, Lefaucheur, Carmen, and Loupy, Alexandre

Subjects
Humans, Antibodies, HLA Antigens, Complement Activation, Transplantation Immunology, Graft Rejection, Graft Survival, General & Internal Medicine, Medical and Health Sciences
Abstract

BACKGROUND:Anti-human leukocyte antigen donor-specific antibodies (anti-HLA DSAs) are recognized as a major barrier to patients' access to organ transplantation and the major cause of graft failure. The capacity of circulating anti-HLA DSAs to activate complement has been suggested as a potential biomarker for optimizing graft allocation and improving the rate of successful transplantations. METHODS AND FINDINGS:To address the clinical relevance of complement-activating anti-HLA DSAs across all solid organ transplant patients, we performed a meta-analysis of their association with transplant outcome through a systematic review, from inception to January 31, 2018. The primary outcome was allograft loss, and the secondary outcome was allograft rejection. A comprehensive search strategy was conducted through several databases (Medline, Embase, Cochrane, and Scopus). A total of 5,861 eligible citations were identified. A total of 37 studies were included in the meta-analysis. Studies reported on 7,936 patients, including kidney (n = 5,991), liver (n = 1,459), heart (n = 370), and lung recipients (n = 116). Solid organ transplant recipients with circulating complement-activating anti-HLA DSAs experienced an increased risk of allograft loss (pooled HR 3.09; 95% CI 2.55-3.74, P = 0.001; I2 = 29.3%), and allograft rejection (pooled HR 3.75; 95% CI: 2.05-6.87, P = 0.001; I2 = 69.8%) compared to patients without complement-activating anti-HLA DSAs. The association between circulating complement-activating anti-HLA DSAs and allograft failure was consistent across all subgroups and sensitivity analyses. Limitations of the study are the observational and retrospective design of almost all included studies, the higher proportion of kidney recipients compared to other solid organ transplant recipients, and the inclusion of fewer studies investigating allograft rejection. CONCLUSIONS:In this study, we found that circulating complement-activating anti-HLA DSAs had a significant deleterious impact on solid organ transplant survival and risk of rejection. The detection of complement-activating anti-HLA DSAs may add value at an individual patient level for noninvasive biomarker-guided risk stratification. TRIAL REGISTRATION:National Clinical Trial protocol ID: NCT03438058.

Published
2018

23. Dynamic prediction of renal survival among deeply phenotyped kidney transplant recipients using artificial intelligence: an observational, international, multicohort study

Author

Raynaud, Marc, Aubert, Olivier, Divard, Gillian, Reese, Peter P, Kamar, Nassim, Yoo, Daniel, Chin, Chen-Shan, Bailly, Élodie, Buchler, Matthias, Ladrière, Marc, Le Quintrec, Moglie, Delahousse, Michel, Juric, Ivana, Basic-Jukic, Nikolina, Crespo, Marta, Silva, Helio Tedesco, Jr, Linhares, Kamilla, Ribeiro de Castro, Maria Cristina, Soler Pujol, Gervasio, Empana, Jean-Philippe, Ulloa, Camilo, Akalin, Enver, Böhmig, Georg, Huang, Edmund, Stegall, Mark D, Bentall, Andrew J, Montgomery, Robert A, Jordan, Stanley C, Oberbauer, Rainer, Segev, Dorry L, Friedewald, John J, Jouven, Xavier, Legendre, Christophe, Lefaucheur, Carmen, and Loupy, Alexandre

Published
2021
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24. The impact of competing risks in kidney allograft failure prediction

Author

Truchot, Agathe, primary, Raynaud, Marc, additional, Helantera, Ilkka, additional, Aubert, Olivier, additional, Kamar, Nassim, additional, Legendre, Christophe, additional, Hertig, Alexandre, additional, Buchler, Matthias, additional, Crespo, Marta, additional, Akalin, Enver, additional, Soler Pujol, Gervasio, additional, Ribeiro de Castro, Maria Cristina, additional, Matas, Arthur J., additional, Ulloa, Camilo, additional, Jordan, Stanley C., additional, Huang, Edmund, additional, Juric, Ivana, additional, Basic-Jukic, Nikolina, additional, Coemans, Maarten, additional, Naesens, Maarten, additional, Friedewald, John J., additional, Tedesco Silva, Helio, additional, Lefaucheur, Carmen, additional, Segev, Dorry L., additional, Collins, Gary S., additional, and Loupy, Alexandre, additional

Published
2024
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25. COVID-19 pandemic and worldwide organ transplantation: a population-based study

Author

Aubert, Olivier, Yoo, Daniel, Zielinski, Dina, Cozzi, Emanuele, Cardillo, Massimo, Dürr, Michael, Domínguez-Gil, Beatriz, Coll, Elisabeth, Da Silva, Margarida Ivo, Sallinen, Ville, Lemström, Karl, Midtvedt, Karsten, Ulloa, Camilo, Immer, Franz, Weissenbacher, Annemarie, Vallant, Natalie, Basic-Jukic, Nikolina, Tanabe, Kazunari, Papatheodoridis, Georgios, Menoudakou, Georgia, Torres, Martin, Soratti, Carlos, Hansen Krogh, Daniela, Lefaucheur, Carmen, Ferreira, Gustavo, Silva, Helio Tedesco, Jr, Hartell, David, Forsythe, John, Mumford, Lisa, Reese, Peter P, Kerbaul, François, Jacquelinet, Christian, Vogelaar, Serge, Papalois, Vassilios, and Loupy, Alexandre

Published
2021
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27. Time-dependent lymphocyte count after transplantation is associated with higher risk of graft failure and death

Author

Blancho, Gilles, Branchereau, Julien, Cantarovich, Diego, Chapelet, Agnès, Dantal, Jacques, Deltombe, Clément, Figueres, Lucile, Garandeau, Claire, Giral, Magali, Gourraud-Vercel, Caroline, Hourmant, Maryvonne, Karam, Georges, Kerleau, Clarisse, Meurette, Aurélie, Ville, Simon, Kandell, Christine, Moreau, Anne, Renaudin, Karine, Cesbron, Anne, Delbos, Florent, Walencik, Alexandre, Devis, Anne, Amrouche, Lucile, Anglicheau, Dany, Aubert, Olivier, Bererhi, Lynda, Legendre, Christophe, Loupy, Alexandre, Martinez, Frank, Sberro-Soussan, Rébecca, Scemla, Anne, Tinel, Claire, Zuber, Julien, Dujardin, Amaury, Lorent, Marine, Foucher, Yohann, and Brouard, Sophie

Published
2021
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28. Trajectories of glomerular filtration rate and progression to end stage kidney disease after kidney transplantation

Author

Raynaud, Marc, Aubert, Olivier, Reese, Peter P., Bouatou, Yassine, Naesens, Maarten, Kamar, Nassim, Bailly, Élodie, Giral, Magali, Ladrière, Marc, Le Quintrec, Moglie, Delahousse, Michel, Juric, Ivana, Basic-Jukic, Nikolina, Gupta, Gaurav, Akalin, Enver, Yoo, Daniel, Chin, Chen-Shan, Proust-Lima, Cécile, Böhmig, Georg, Oberbauer, Rainer, Stegall, Mark D., Bentall, Andrew J., Jordan, Stanley C., Huang, Edmund, Glotz, Denis, Legendre, Christophe, Montgomery, Robert A., Segev, Dorry L., Empana, Jean-Philippe, Grams, Morgan E., Coresh, Josef, Jouven, Xavier, Lefaucheur, Carmen, and Loupy, Alexandre

Published
2021
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29. The Banff 2022 Kidney Meeting Work Plan:Data-driven refinement of the Banff Classification for renal allografts

Author

Roufosse, Candice, Naesens, Maarten, Haas, Mark, Lefaucheur, Carmen, Mannon, Roslyn B., Afrouzian, Marjan, Alachkar, Nada, Aubert, Olivier, Bagnasco, Serena M., Batal, Ibrahim, Bellamy, Chris O.C., Broecker, Verena, Budde, Klemens, Clahsen-Van Groningen, Marian, Coley, Shana M., Cornell, Lynn D., Dadhania, Darshana, Demetris, Anthony J., Einecke, Gunilla, Farris, Alton B., Fogo, Agnes B., Friedewald, John, Gibson, Ian W., Horsfield, Catherine, Huang, Edmund, Husain, Syed A., Jackson, Annette M., Kers, Jesper, Kikić, Željko, Klein, Amanda, Kozakowski, Nicolas, Liapis, Helen, Mangiola, Massima, Montgomery, Robert A., Nankinvell, Brian, Neil, Desley A.H., Nickerson, Peter, Rabant, Marion, Randhawa, Parmjeet, Riella, Leonardo V., Rosales, Ivy, Royal, Virginie, Sapir-Pichhadze, Ruth, Sarder, Pinaki, Sarwal, Minnie, Schinstock, Carrie, Stegall, Mark, Solez, Kim, van der Laak, Jeroen, Wiebe, Chris, Colvin, Robert B., Loupy, Alexandre, Mengel, Michael, Roufosse, Candice, Naesens, Maarten, Haas, Mark, Lefaucheur, Carmen, Mannon, Roslyn B., Afrouzian, Marjan, Alachkar, Nada, Aubert, Olivier, Bagnasco, Serena M., Batal, Ibrahim, Bellamy, Chris O.C., Broecker, Verena, Budde, Klemens, Clahsen-Van Groningen, Marian, Coley, Shana M., Cornell, Lynn D., Dadhania, Darshana, Demetris, Anthony J., Einecke, Gunilla, Farris, Alton B., Fogo, Agnes B., Friedewald, John, Gibson, Ian W., Horsfield, Catherine, Huang, Edmund, Husain, Syed A., Jackson, Annette M., Kers, Jesper, Kikić, Željko, Klein, Amanda, Kozakowski, Nicolas, Liapis, Helen, Mangiola, Massima, Montgomery, Robert A., Nankinvell, Brian, Neil, Desley A.H., Nickerson, Peter, Rabant, Marion, Randhawa, Parmjeet, Riella, Leonardo V., Rosales, Ivy, Royal, Virginie, Sapir-Pichhadze, Ruth, Sarder, Pinaki, Sarwal, Minnie, Schinstock, Carrie, Stegall, Mark, Solez, Kim, van der Laak, Jeroen, Wiebe, Chris, Colvin, Robert B., Loupy, Alexandre, and Mengel, Michael

Abstract

The XVIth Banff Meeting for Allograft Pathology was held in Banff, Alberta, Canada, from September 19 to 23, 2022, as a joint meeting with the Canadian Society of Transplantation. In addition to a key focus on the impact of microvascular inflammation and biopsy-based transcript analysis on the Banff Classification, further sessions were devoted to other aspects of kidney transplant pathology, in particular T cell–mediated rejection, activity and chronicity indices, digital pathology, xenotransplantation, clinical trials, and surrogate endpoints. Although the output of these sessions has not led to any changes in the classification, the key role of Banff Working Groups in phrasing unanswered questions, and coordinating and disseminating results of investigations addressing these unanswered questions was emphasized. This paper summarizes the key Banff Meeting 2022 sessions not covered in the Banff Kidney Meeting 2022 Report paper and also provides an update on other Banff Working Group activities relevant to kidney allografts.

Published
2024

31. Annotating Video with Open Educational Resources in a Flipped Classroom Scenario

Author

Aubert, Olivier and Jaeger, Joscha

Subjects
Computer Science - Computers and Society, Computer Science - Multimedia
Abstract

A wealth of Open Educational Resources is now available, and beyond the first and evident problem of finding them, the issue of articulating a set of resources is arising. When using audiovisual resources, among different possibilities, annotating a video resource with additional resources linked to specific fragments can constitute one of the articulation modalities. Annotating a video is a complex task, and in a pedagogical context, intermediary activities should be proposed in order to mitigate this complexity. In this paper, we describe a tool dedicated to supporting video annotation activities. It aims at improving learner engagement, by having students be more active when watching videos by offering a progressive annotation process, first guided by providing predefined resources, then more freely, to accompany users in the practice of annotating videos., Comment: OCWC Global Conference, Apr 2014, Llubljana, Slovenia

Published
2014

32. Reassessment of the clinical impact of preformed donor-specific anti-HLA-Cw antibodies in kidney transplantation

Author

Visentin, Jonathan, Bachelet, Thomas, Aubert, Olivier, Del Bello, Arnaud, Martinez, Charlie, Jambon, Frédéric, Guidicelli, Gwendaline, Ralazamahaleo, Mamy, Bouthemy, Charlène, Cargou, Marine, Congy-Jolivet, Nicolas, Nong, Thoa, Lee, Jar-How, Sberro-Soussan, Rebecca, Couzi, Lionel, Kamar, Nassim, Legendre, Christophe, Merville, Pierre, and Taupin, Jean-Luc

Published
2020
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33. Prognostic Biomarkers in Kidney Transplantation: A Systematic Review and Critical Appraisal

Author

Raynaud, Marc, primary, Al-Awadhi, Solaf, additional, Louis, Kevin, additional, Zhang, Huanxi, additional, Su, Xiaojun, additional, Goutaudier, Valentin, additional, Wang, Jiali, additional, Demir, Zeynep, additional, Wei, Yongcheng, additional, Truchot, Agathe, additional, Bouquegneau, Antoine, additional, Del Bello, Arnaud, additional, Bailly, Élodie, additional, Lombardi, Yannis, additional, Maanaoui, Mehdi, additional, Giarraputo, Alessia, additional, Naser, Sofia, additional, Divard, Gillian, additional, Aubert, Olivier, additional, Murad, Mohammad Hassan, additional, Wang, Changxi, additional, Liu, Longshan, additional, Bestard, Oriol, additional, Naesens, Maarten, additional, Friedewald, John J., additional, Lefaucheur, Carmen, additional, Riella, Leonardo, additional, Collins, Gary, additional, Ioannidis, John P.A., additional, and Loupy, Alexandre, additional

Published
2023
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34. Identification of liver transplant biopsy phenotypes associated with distinct liver biological markers and allograft survival

Author

Demir, Zeynep, primary, Raynaud, Marc, additional, Aubert, Olivier, additional, Debray, Dominique, additional, Sebagh, Mylène, additional, Van Huyen, Jean-Paul Duong, additional, Del Bello, Arnaud, additional, Congy Jolivet, Nicolas, additional, Paradis, Valérie, additional, Durand, François, additional, Muratot, Sophie, additional, Lozach, Cécile, additional, Chardot, Christophe, additional, Francoz, Claire, additional, Sarnacki, Sabine, additional, Coilly, Audrey, additional, Samuel, Didier, additional, Vibert, Eric, additional, Féray, Cyrille, additional, Lefaucheur, Carmen, additional, and Loupy, Alexandre, additional

Published
2023
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35. Leveraging video annotations in video-based e-learning

Author

Aubert, Olivier, Prié, Yannick, and Canellas, Camila

Subjects
Computer Science - Computers and Society, Computer Science - Human-Computer Interaction, Computer Science - Multimedia
Abstract

The e-learning community has been producing and using video content for a long time, and in the last years, the advent of MOOCs greatly relied on video recordings of teacher courses. Video annotations are information pieces that can be anchored in the temporality of the video so as to sustain various processes ranging from active reading to rich media editing. In this position paper we study how video annotations can be used in an e-learning context - especially MOOCs - from the triple point of view of pedagogical processes, current technical platforms functionalities, and current challenges. Our analysis is that there is still plenty of room for leveraging video annotations in MOOCs beyond simple active reading, namely live annotation, performance annotation and annotation for assignment; and that new developments are needed to accompany this evolution., Comment: 7th International Conference on Computer Supported Education (CSEDU), Barcelone : Spain (2014)

Published
2014

36. Prediction system for risk of allograft loss in patients receiving kidney transplants : international derivation and validation study

Author

Loupy, Alexandre, Aubert, Olivier, Orandi, Babak J, Naesens, Maarten, Bouatou, Yassine, Raynaud, Marc, Divard, Gillian, Jackson, Annette M, Viglietti, Denis, Giral, Magali, Kamar, Nassim, Thaunat, Olivier, Morelon, Emmanuel, Delahousse, Michel, Kuypers, Dirk, Hertig, Alexandre, Rondeau, Eric, Bailly, Elodie, Eskandary, Farsad, Böhmig, Georg, Gupta, Gaurav, Glotz, Denis, Legendre, Christophe, Montgomery, Robert A, Stegall, Mark D, Empana, Jean-Philippe, Jouven, Xavier, Segev, Dorry L, and Lefaucheur, Carmen

Published
2019

37. COVID-19-related medical research: a meta-research and critical appraisal

Author

Raynaud, Marc, Zhang, Huanxi, Louis, Kevin, Goutaudier, Valentin, Wang, Jiali, Dubourg, Quentin, Wei, Yongcheng, Demir, Zeynep, Debiais, Charlotte, Aubert, Olivier, Bouatou, Yassine, Lefaucheur, Carmen, Jabre, Patricia, Liu, Longshan, Wang, Changxi, Jouven, Xavier, Reese, Peter, Empana, Jean-Philippe, and Loupy, Alexandre

Published
2021
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40. The Banff 2022 Kidney Meeting Work Plan: Data-driven refinement of the Banff Classification for renal allografts

Author

Roufosse, Candice, primary, Naesens, Maarten, additional, Haas, Mark, additional, Lefaucheur, Carmen, additional, Mannon, Roslyn B., additional, Afrouzian, Marjan, additional, Alachkar, Nada, additional, Aubert, Olivier, additional, Bagnasco, Serena M., additional, Batal, Ibrahim, additional, Bellamy, Chris O.C., additional, Broecker, Verena, additional, Budde, Klemens, additional, Clahsen-Van Groningen, Marian, additional, Coley, Shana M., additional, Cornell, Lynn D., additional, Dadhania, Darshana, additional, Demetris, Anthony J., additional, Einecke, Gunilla, additional, Farris, Alton B., additional, Fogo, Agnes B., additional, Friedewald, John, additional, Gibson, Ian W., additional, Horsfield, Catherine, additional, Huang, Edmund, additional, Husain, Syed A., additional, Jackson, Annette M., additional, Kers, Jesper, additional, Kikić, Željko, additional, Klein, Amanda, additional, Kozakowski, Nicolas, additional, Liapis, Helen, additional, Mangiola, Massima, additional, Montgomery, Robert A., additional, Nankinvell, Brian, additional, Neil, Desley A.H., additional, Nickerson, Peter, additional, Rabant, Marion, additional, Randhawa, Parmjeet, additional, Riella, Leonardo V., additional, Rosales, Ivy, additional, Royal, Virginie, additional, Sapir-Pichhadze, Ruth, additional, Sarder, Pinaki, additional, Sarwal, Minnie, additional, Schinstock, Carrie, additional, Stegall, Mark, additional, Solez, Kim, additional, van der Laak, Jeroen, additional, Wiebe, Chris, additional, Colvin, Robert B., additional, Loupy, Alexandre, additional, and Mengel, Michael, additional

Published
2023
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42. The Banff 2022 Kidney Meeting Report: Re-Appraisal of Microvascular Inflammation and the Role of Biopsy-Based Transcript Diagnostics

Author

Naesens, Maarten, primary, Roufosse, Candice, additional, Haas, Mark, additional, Lefaucheur, Carmen, additional, Mannon, Roslyn B., additional, Adam, Benjamin A., additional, Aubert, Olivier, additional, Böhmig, Georg A., additional, Callemeyn, Jasper, additional, Groningen, Marian Clahsen-van, additional, Cornell, Lynn D., additional, Demetris, Anthony J., additional, Drachenberg, Cinthia B., additional, Einecke, Gunilla, additional, Fogo, Agnes B., additional, Gibson, Ian W., additional, Halloran, Philip, additional, Hidalgo, Luis G., additional, Horsfield, Catherine, additional, Huang, Edmund, additional, Kikić, Željko, additional, Kozakowski, Nicolas, additional, Nankivell, Brian, additional, Rabant, Marion, additional, Randhawa, Parmjeet, additional, Riella, Leonardo V., additional, Sapir-Pichhadze, Ruth, additional, Schinstock, Carrie, additional, Solez, Kim, additional, Tambur, Anat R., additional, Thaunat, Olivier, additional, Wiebe, Chris, additional, Zielinski, Dina, additional, Colvin, Robert, additional, Loupy, Alexandre, additional, and Mengel, Michael, additional

Published
2023
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43. Validation of a prediction system for risk of kidney allograft failure in pediatric kidney transplant recipients: An international observational study

Author

Hogan, Julien, primary, Divard, Gillian, additional, Aubert, Olivier, additional, Garro, Rouba, additional, Boyer, Olivia, additional, Donald Cooper, Lee Alex, additional, Farris, Alton Brad, additional, Fila, Marc, additional, Seifert, Michael, additional, Sellier-Leclerc, Anne-Laure, additional, Smith, Jody, additional, Fichtner, Alexander, additional, Tönshoff, Burkhard, additional, Twombley, Katherine, additional, Warady, Bradley, additional, Pearl, Meghan, additional, Zahr, Rima S., additional, Lefaucheur, Carmen, additional, Patzer, Rachel, additional, and Loupy, Alexandre, additional

Published
2023
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44. Qualifying a Novel Clinical Trial Endpoint (iBOX) Predictive of Long-Term Kidney Transplant Outcomes

Author

Klein, Amanda, primary, Loupy, Alexandre, additional, Stegall, Mark, additional, Helanterä, Ilkka, additional, Kosinski, Luke, additional, Frey, Eric, additional, Aubert, Olivier, additional, Divard, Gillian, additional, Newell, Kenneth, additional, Meier-Kriesche, Herwig-Ulf, additional, Mannon, Roslyn, additional, Dumortier, Thomas, additional, Aggarwal, Varun, additional, Podichetty, Jagdeep T., additional, O’Doherty, Inish, additional, Gaber, Ahmed Osama, additional, and Fitzsimmons, William E., additional

Published
2023
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45. Banff Human Organ Transplant Consensus Gene Panel for the Detection of Antibody Mediated Rejection in Heart Allograft Biopsies

Author

Giarraputo, Alessia, primary, Coutance, Guillaume, additional, Aubert, Olivier, additional, Fedrigo, Marny, additional, Mezine, Fariza, additional, Zielinski, Dina, additional, Mengel, Michael, additional, Bruneval, Patrick, additional, Duong van Huyen, Jean-Paul, additional, Angelini, Annalisa, additional, and Loupy, Alexandre, additional

Published
2023
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