129 results on '"Atkinson RA"'
Search Results
2. 15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism
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Abis, G, Charles, RL, Kopec, J, Yue, WW, Atkinson, RA, Bui, TTT, Lynham, S, Popova, S, Sun, Y-B, Fraternali, F, Eaton, P, Conte, MR, King‘s College London, and University of Oxford [Oxford]
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[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,lcsh:Biology (General) ,lcsh:QH301-705.5 ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] - Abstract
Human soluble epoxide hydrolase (hsEH) is an enzyme responsible for the inactivation of bioactive epoxy fatty acids, and its inhibition is emerging as a promising therapeutical strategy to target hypertension, cardiovascular disease, pain and insulin sensitivity. Here, we uncover the molecular bases of hsEH inhibition mediated by the endogenous 15-deoxy-Δ 12,14-Prostaglandin J 2 (15d-PGJ 2). Our data reveal a dual inhibitory mechanism, whereby hsEH can be inhibited by reversible docking of 15d-PGJ 2 in the catalytic pocket, as well as by covalent locking of the same compound onto cysteine residues C423 and C522, remote to the active site. Biophysical characterisations allied with in silico investigations indicate that the covalent modification of the reactive cysteines may be part of a hitherto undiscovered allosteric regulatory mechanism of the enzyme. This study provides insights into the molecular modes of inhibition of hsEH epoxy-hydrolytic activity and paves the way for the development of new allosteric inhibitors.
- Published
- 2019
3. P02 Potential benefit of singing for people with parkinson’s disease: a systematic review updated to 2017
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Barnish, MS, primary, Atkinson, RA, additional, Barran, SM, additional, and Barnish, J, additional
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- 2017
- Full Text
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4. [Untitled]
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Annalisa Pastore, Geoff Kelly, Atkinson Ra, Frederick W. Muskett, Thomas A. Frenkiel, Catherine Joseph, and Daniel Nietlispach
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Myosin light-chain kinase ,biology ,EF hand ,macromolecular substances ,Actinin ,musculoskeletal system ,Biochemistry ,Sarcomere ,Actinin, alpha 1 ,Crystallography ,Protein structure ,Structural Biology ,Genetics ,Biophysics ,biology.protein ,Titin ,Binding site - Abstract
The interaction between α-actinin and titin, two modular muscle proteins, is essential for sarcomere assembly. We have solved the solution structure of a complex between the calcium-insensitive C-terminal EF-hand domain of α-actinin-2 and the seventh Z-repeat of titin. The structure of the complex is in a semi-open conformation and closely resembles that of myosin light chains in their complexes with heavy chain IQ motifs. However, no IQ motif is present in the Z-repeat, suggesting that the semi-open conformation is a general structural solution for calcium-independent recognition of EF-hand domains.
- Published
- 2001
5. Letter to the Editor: Assignment of the H-1, C-13 and N-15 resonances of the C-terminal EF-hands of alpha-actinin in a 14 kDa complex with Z-repeat 7 of titin
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Atkinson RA, Joseph C, Kelly G, Muskett FW, Frenkiel TA, Pastore A, Atkinson, Ra, Joseph, C, Kelly, G, Muskett, Fw, Frenkiel, Ta, and Pastore, A
- Published
- 2000
6. Binding of alpha-actinin to titin: implications for Z-disk assembly
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Atkinson RA, Joseph C, Dal Piaz F, Birolo L, Stier G, Pucci P, Pastore A, RI Dal Piaz Fabrizio/D-1843-2010, Atkinson, Ra, Joseph, C, Dal Piaz, F, Birolo, L, Stier, G, Pucci, P, Pastore, A, RI Dal Piaz, Fabrizio/D-1843-2010, Atkinson, R. A., Joseph, J., DAL PIAZ, Fabrizio, Birolo, Leila, Pucci, Pietro, and Pastore, A.
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Protein Conformation ,Molecular Sequence Data ,Muscle Proteins ,macromolecular substances ,Biochemistry ,Sarcomere ,Mass Spectrometry ,Protein Structure, Secondary ,Actinin ,Connectin ,Amino Acid Sequence ,Nitrogen Isotopes ,biology ,Chemistry ,musculoskeletal system ,Peptide Fragments ,Actinin, alpha 1 ,biology.protein ,Biophysics ,Titin ,Protein Kinases ,Sequence Alignment ,Protein Binding - Abstract
Titin is an exceptionally large protein (M.Wt. approximately 3 MDa) that spans half the sarcomere in muscle, from the Z-disk to the M-line. In the Z-disk, it interacts with alpha-actinin homodimers that are a principal component of the Z-filaments linking actin filaments. The interaction between titin and alpha-actinin involves repeating approximately 45 amino acid sequences (Z-repeats) near the N-terminus of titin and the C-lobe of the C-terminal calmodulin-like domain of alpha-actinin. The conformation of Z-repeat 7 (ZR7) of titin when complexed with the 73-amino acid C-terminal portion of alpha-actinin (EF34) was studied by heteronuclear NMR spectroscopy using (15)N-labeling of ZR7 and found to be helical over a stretch of 18 residues. Complex formation resulted in the protection of one site of preferential cleavage of EF34 at Phe14-Leu17, as determined by limited proteolysis experiments coupled to mass spectrometry measurements. Intermolecular NOEs show Val16 of ZR7 to be positioned close in space to the backbone of EF34 around Phe14. These observations suggest that the mode of binding of ZR7 to EF34 is similar to that of troponin I to troponin C and of peptide C20W to calmodulin. These complexes would appear to represent a general alternative binding mode of calmodulin-like domains to target peptides.
- Published
- 2000
7. Isolation of Neospora caninum genes detected during a chronic murine infection
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Atkinson, RA, Ryce, C, Miller, CMD, Balu, S, Harper, PAW, and Ellis, JT
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Mice, Inbred BALB C ,DNA, Complementary ,Sequence Homology, Amino Acid ,Coccidiosis ,fungi ,Molecular Sequence Data ,Neospora ,Mycology & Parasitology ,Antigens, Protozoan ,DNA, Protozoan ,Rodent Diseases ,Mice ,Open Reading Frames ,parasitic diseases ,Animals ,Electrophoresis, Polyacrylamide Gel ,Amino Acid Sequence ,Toxoplasma ,Sequence Alignment - Abstract
In order to isolate genes coding for antigens of Neospora caninum which are recognised by the host immune system during a chronic murine infection, a cDNA library was immunoscreened with pooled sera from mice which survived three independent infections by N. caninum. Two new genes from N. caninum were isolated and expressed in Escherichia coli. The genes identified include one homologous to GRA1 of Toxoplasma gondii, plus another (NCP20) previously unknown in any taxon. Both genes encode small polypeptides which induced an IgG response in the mouse and were also recognised by IgG from a cow chronically infected with N. caninum. These results are consistent with the hypothesis that the polypeptides encoded by these genes are a target for the host immune system during chronic infections of N. caninum. © 2001 Published by Elsevier Science Ltd.
- Published
- 2001
8. [Untitled]
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Geoff Kelly, Thomas A. Frenkiel, Atkinson Ra, Catherine Joseph, Pastor A, and Frederick W. Muskett
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Actinin, alpha 1 ,Nuclear magnetic resonance ,biology ,Terminal (electronics) ,EF hand ,Chemistry ,biology.protein ,α actinin ,Titin ,Biochemistry ,Spectroscopy - Published
- 2000
9. Seroprevalence ofNeospora caninuminfection following an abortion outbreak in a dairy cattle herd
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ATKINSON, RA, primary, COOK, RW, additional, REDDACLIFF, LA, additional, ROTHWELL, J, additional, BROADY, KW, additional, HARPER, PAW, additional, and ELLIS, JT, additional
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- 2000
- Full Text
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10. Interleukin-12p70-dependent interferon-y production is crucial for resistance in African trypanosomiasis.
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Barkhuizen M, Magez S, Atkinson RA, and Brombacher F
- Abstract
African trypanosomiasis encompasses diseases caused by pathogenic trypanosomes, infecting both humans and animals. In the present article, we dissected the possible role of members of the interleukin (IL)-12 family during infection with Trypanosoma brucei brucei and Trypanosoma evansi in mice. IL-12p35(-/-), IL-12p40(-/-), and IL-12p35(-/-)/p40(-/-) mice were susceptible to both pathogens, as was demonstrated by the increased mortality among these mice, compared with wild-type C57BL/6 mice. The different IL-12p70(-/-) mouse strains showed similar mortality kinetics, suggesting that IL-12p70--but not the IL-12p80 homodimer or IL-23--plays a crucial role in survival. Although there were similar plasma levels of immunoglobulin (Ig) M and IgG2a in IL-12-deficient mice and wild-type mice, interferon (IFN)- gamma production, especially during early infection, was severely impaired in all IL-12p70(-/-) mouse strains, demonstrating an IL-12p70-dependent mechanism for IFN- gamma production. Because IFN- gamma receptor-deficient mice (IFN- gamma R(-/-)) were also highly susceptible to both Trypanosoma species, IL-12p70-dependent IFN- gamma production seems to be the important mechanism involved in resistance against both pathogens. Copyright © 2007 Infectious Diseases Society of America [ABSTRACT FROM AUTHOR]
- Published
- 2007
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11. Seroprevalence of Neospora caninum infection following an abortion outbreak in a dairy cattle herd.
- Author
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ATKINSON, RA, COOK, RW, REDDACLIFF, LA, ROTHWELL, J, BROADY, KW, HARPER, PAW, and ELLIS, JT
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- 2000
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12. 'Deer Woman'
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Appenzeller O and Atkinson Ra
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Pediatrics ,medicine.medical_specialty ,Neurology ,business.industry ,medicine ,Physical therapy ,Neurology (clinical) ,Migraine Disorders ,business - Published
- 1978
13. Seroprevalence of Neospora caninuminfection following an abortion outbreak in a dairy cattle herd
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ATKINSON, RA, COOK, RW, REDDACLIFF, LA, ROTHWELL, J, BROADY, KW, HARPER, PAW, and ELLIS, JT
- Published
- 2000
- Full Text
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14. P02 Potential benefit of singing for people with parkinson’s disease: a systematic review updated to 2017
- Author
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Barnish, MS, Atkinson, RA, Barran, SM, and Barnish, J
- Abstract
BackgroundThere is evidence that participation in performing arts brings psychosocial benefits in the general population. In recent years, there has been substantial interest in the potential therapeutic benefits of performing arts for people with chronic neurological conditions. A lack of effective evidence synthesis, however, made it difficult to evaluate the evidence base and future research directions. We conducted the first systematic review of the potential benefit of singing for people with Parkinson’s disease (PD) on speech, communication, cognition, motor function and quality of life outcomes. Here, we present an updated version of this systematic review up to January 2017.MethodsSeven standard academic health bibliographic databases, including MEDLINE and EMBASE, were searched up to January 2017 using MeSH terms and keywords corresponding to (Parkinson’s disease AND (Singing OR Music OR Music therapy). Supplementary searches were also conducted in Google Scholar and bibliographies of relevant articles. We considered full-text original articles assessing the potential benefit of singing for human participants with clinically diagnosed PD on speech impairment, functional communication, cognitive status, motor function or quality of life using any appropriate quantitative design. Narrative synthesis was conducted using standard forms. Proportionate second review was conducted. Study quality was assessed using the Threats to Validity tool.ResultsA total of 490 unique records were identified, 30 full-text publications were screened and eight studies included in the review. All eight studies assessed the impact of singing on speech, of which six found evidence of benefit. Two studies assessed quality of life, one finding evidence of benefit. One study assessed functional communication and found no evidence of benefit. No studies assessed cognitive or motor function. One study was assessed at low risk of bias, one at medium risk of bias and six at high risk of bias.ConclusionIncluded studies provide evidence that singing benefits the speech of people with PD. However, evidence is limited with regard to wider benefits, especially those of a psychosocial nature such as functional communication and quality of life, which are areas of high important to people with PD. A key limitation of our review is that most studies were at high risk of bias. Groups such as Parkinson’s UK run choirs for people with PD – this seems a good idea and has some evidence base, but further more rigorous studies are required to provide a stronger evidence base to support greater healthcare provider-community organisation partnerships.
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- 2017
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15. Ca2+-independent binding of an EF-hand domain to a novel motif in the alpha-actinin-titin complex
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R A, Atkinson, C, Joseph, G, Kelly, F W, Muskett, T A, Frenkiel, D, Nietlispach, A, Pastore, Atkinson, Ra, Joseph, C, Kelly, G, Muskett, Fw, Frenkiel, Ta, Nietlispach, D, and Pastore, A
- Subjects
Models, Molecular ,Binding Sites ,Sequence Homology, Amino Acid ,Protein Conformation ,Amino Acid Motifs ,Calcium-Binding Proteins ,Molecular Sequence Data ,Muscle Proteins ,macromolecular substances ,musculoskeletal system ,Actinin ,Calcium ,Connectin ,Amino Acid Sequence ,Nuclear Magnetic Resonance, Biomolecular ,Protein Kinases - Abstract
The interaction between alpha-actinin and titin, two modular muscle proteins, is essential for sarcomere assembly. We have solved the solution structure of a complex between the calcium-insensitive C-terminal EF-hand domain of alpha-actinin-2 and the seventh Z-repeat of titin. The structure of the complex is in a semi-open conformation and closely resembles that of myosin light chains in their complexes with heavy chain IQ motifs. However, no IQ motif is present in the Z-repeat, suggesting that the semi-open conformation is a general structural solution for calcium-independent recognition of EF-hand domains.
- Published
- 2001
16. The assembly of immunoglobulin-like modules in titin: Implications for muscle elasticity
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R A Atkinson, M Gautel, A. Pastore, J F Lefèvre, Jill Trewhella, Sabina Improta, Joanna K. Krueger, S Moulton, Improta, S, Krueger, Jk, Gautel, M, Atkinson, Ra, Lefevre, Jf, Moulton, S, Trewhella, J, Pastore, A, and RI Krueger, Joanna/A-3110-2011
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Physics ,Magnetic Resonance Spectroscopy ,biology ,Tandem ,Protein Conformation ,Small-angle X-ray scattering ,Scattering ,Muscles ,Hinge ,Immunoglobulins ,Muscle Proteins ,Geometry ,Sarcomere ,Elasticity ,Recombinant Proteins ,Crystallography ,Protein structure ,Structural Biology ,biology.protein ,Scattering, Radiation ,Connectin ,Titin ,Elasticity (economics) ,Protein Kinases ,Molecular Biology - Abstract
Titin, a giant muscle protein, forms filaments that span half of the sarcomere and cover, along their length, quite diversified functions. The region of titin located in the sarcomere I-band is believed to play a major rôle in extensibility and passive elasticity of muscle. In the I-band, the titin sequence contains tandem immunoglobulin-like (Ig) modules intercalated by a potentially non-globular region. By a combined approach making use of small angle X-ray scattering and nuclear magnetic resonance techniques, we have addressed the questions of what are the average mutual orientation of poly-Igs and the degree of flexibility around the domain interfaces. Various recombinant fragments containing one, two and four titin I-band tandem domains were analysed. The small-angle scattering data provide a picture of the domains in a mostly extended configuration with their long axes aligned head-to-tail. There is a small degree of bending and twisting of the modules with respect to each other that results in an overall shortening in their maximum linear dimension compared with that expected for the fully extended, linear configurations. This shortening is greatest for the four module construct ( approximately 15%). 15N NMR relaxation studies of one and two-domain constructs show that the motions around the interdomain connecting regions are restricted, suggesting that titin behaves as a row of beads connected by rigid hinges. The length of the residues in the interface seems to be the major determinant of the degree of flexibility. Possible implications of our results for the structure and function of titin in muscles are discussed.
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- 1998
17. Solution Structure of ZASP PDZ Domain Implications for Sarcomere Ultrastructure and Enigma Family Redundancy
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Yunghan, Au, R Andrew, Atkinson, Remo, Guerrini, Geoff, Kelly, Catherine, Joseph, Steven R, Martin, Frederick W, Muskett, Alberto, Pallavicini, Georgine, Faulkner, Annalisa, Pastore, Au, Yh, Atkinson, Ra, Guerrini, R, Kelly, G, Joseph, C, Martin, Sr, Muskett, Fw, Pallavicini, A, Faulkner, G, Pastore, A, Au, Y, Pallavicini, Alberto, and Pastore, A.
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Models, Molecular ,Sarcomeres ,Homeodomain Proteins ,Magnetic Resonance Spectroscopy ,Signal Transducing ,alpha actinin ,Muscle Proteins ,macromolecular substances ,LIM Domain Proteins ,Muscle Protein ,musculoskeletal system ,Protein Structure, Tertiary ,Humans ,Actinin ,Connectin ,Carrier Proteins ,Protein Kinases ,Adaptor Proteins, Signal Transducing - Abstract
Z band alternately spliced PDZ-containing protein (ZASP) is a sarcomere Z disk protein expressed in human cardiac and skeletal muscle that is thought to be involved in a dominant familial dilated cardiomyopathy. The N-terminal PDZ domain of ZASP interacts with the C terminus of alpha-actinin-2, the major component of the Z disk, probably by forming a ternary complex with titin Z repeats. We have determined the structure of ZASP PDZ by NMR and showed that it is a classical class 1 PDZ domain that recognizes the carboxy-terminal sequence of an alpha-actinin-2 calmodulin-like domain with micromolar affinity. We also characterized the role of each component in the ternary complex ZASP/alpha-actinin-2/titin, showing that the alpha-actinin-2/ZASP PDZ interaction involves a binding surface distinct from that recognized by the titin Z repeats. ZASP PDZ structure was used to model other members of the enigma family by homology and to predict their abilities to bind alpha-actinin-2.
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18. Coarse-Graining the Recognition of a Glycolipid by the C-Type Lectin Mincle Receptor.
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Noriega M, Corey RA, Haanappel E, Demange P, Czaplicki G, Atkinson RA, and Chavent M
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- Calcium metabolism, Calcium chemistry, Molecular Dynamics Simulation, Thermodynamics, Humans, Ligands, Mycobacterium tuberculosis chemistry, Receptors, Immunologic, Glycolipids chemistry, Glycolipids metabolism, Lectins, C-Type chemistry, Lectins, C-Type metabolism
- Abstract
Macrophage inducible Ca
2+ -dependent lectin (Mincle) receptor recognizes Mycobacterium tuberculosis glycolipids to trigger an immune response. This host membrane receptor is thus a key player in the modulation of the immune response to infection by M. tuberculosis and has emerged as a promising target for the development of new vaccines against tuberculosis. The recent development of the Martini 3 force field for coarse-grained (CG) molecular modeling allows the study of interactions of soluble proteins with small ligands which was not typically modeled well with the previous Martini 2 model. Here, we present a refined approach detailing a protocol for modeling interactions between a glycolipid and its receptor at a CG level using the Martini 3 force field. Using this approach, we studied Mincle and identified critical parameters governing ligand recognition, such as loop flexibility and the regulation of hydrophobic groove formation by calcium ions. In addition, we assessed ligand affinity using free energy perturbation calculations. Our results offer mechanistic insight into the interactions between Mincle and glycolipids, providing a basis for the rational design of molecules targeting this type of membrane receptors.- Published
- 2024
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19. HDAC6 inhibition as a mechanism to prevent neurodegeneration in the mSOD1 G93A mouse model of ALS.
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Phipps AJ, Dwyer S, Collins JM, Kabir F, Atkinson RA, Chowdhury MA, Matthews L, Dixit D, Terry RS, Smith J, Gueven N, Bennett W, Cook AL, King AE, and Perry S
- Abstract
The loss of upper and lower motor neurons, and their axons is central to the loss of motor function and death in amyotrophic lateral sclerosis (ALS). Due to the diverse range of genetic and environmental factors that contribute to the pathogenesis of ALS, there have been difficulties in developing effective therapies for ALS. One emerging dichotomy is that protection of the neuronal cell soma does not prevent axonal vulnerability and degeneration, suggesting the need for targeted therapeutics to prevent axon degeneration. Post-translational modifications of protein acetylation can alter the function, stability and half-life of individual proteins, and can be enzymatically modified by histone acetyltransferases (HATs) and histone deacetyltransferases (HDACs), which add, or remove acetyl groups, respectively. Maintenance of post-translational microtubule acetylation has been suggested as a mechanism to stabilize axons, prevent axonal loss and neurodegeneration in ALS. This study used an orally dosed potent HDAC6 inhibitor, ACY-738, prevent deacetylation and stabilize microtubules in the mSOD1
G93A mouse model of ALS. Co-treatment with riluzole was performed to determine any effects or drug interactions and potentially enhance preclinical research translation. This study shows ACY-738 treatment increased acetylation of microtubules in the spinal cord of mSOD1G93A mice, reduced lower motor neuron degeneration in female mice, ameliorated reduction in peripheral nerve axon puncta size, but did not prevent overt motor function decline. The current study also shows peripheral nerve axon puncta size to be partially restored after treatment with riluzole and highlights the importance of co-treatment to measure the potential effects of therapeutics in ALS., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)- Published
- 2024
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20. What are the perspectives of adults aged 18-40 living with type 2 diabetes in urban settings towards barriers and opportunities for better health and well-being: a mixed-methods study.
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Croke S, Volkmann AM, Perry C, Atkinson RA, Pruneddu A, Morris L, and Bower P
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- Adult, Female, Humans, Adolescent, Young Adult, Adaptation, Psychological, Data Accuracy, Exercise, Exercise Therapy, Diabetes Mellitus, Type 2 therapy
- Abstract
Objectives: Delivered as part of the global assessment of diabetes in urban settings, this study explores different aspects of living with type 2 diabetes, for adults aged 18-40. Primary questions were as follows: (1) can we identify subgroups of adults under 40 years old sharing specific perspectives towards health, well-being and living with type 2 diabetes and (2) do these perspectives reveal specific barriers to and opportunities for better type 2 diabetes prevention and management and improved well-being?, Design: The study employed a mixed-method design with data collected through demographic questionnaires, Q-sort statement sorting exercises, focus groups discussions and individual interviews., Setting: Primary care across Greater Manchester, UK., Participants: Those aged between 18 and 40, with a confirmed type 2 diabetes diagnosis, and living in Greater Manchester were eligible to participate. A total of 46 people completed the Q-sort exercise and 43 were included in the final analysis. Of those, 29 (67%) identified as female and 32 (75%) as white. Most common time since diagnosis was between 5 and 10 years., Results: The Q-sort analysis categorised 35 of the 43 participants (81%) into five subgroups. Based on average statement sorts for each subgroup, perspectives were characterised as: (1) stressed and calamity coping (n=13), (2) financially disadvantaged and poorly supported (n=12), (3) well-intentioned but not succeeding (n=5), (4) withdrawn and worried (n=2) and (5) young and stigmatised (n=3). Holistic analysis of our qualitative data also identified some common issues across these subgroups., Conclusions: Adults under 40 with type 2 diabetes are not a homogeneous group, but fall into five identifiable subgroups. They also experience issues specific to this age group that make it particularly difficult for them to focus on their own health. More tailored support could help them to make the necessary lifestyle changes and manage their type 2 diabetes better., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2023
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21. Revisiting specific force loss in human permeabilized single skeletal muscle fibers obtained from older individuals.
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Kalakoutis M, Pollock RD, Lazarus NR, Atkinson RA, George M, Berber O, Woledge RC, Ochala J, and Harridge SDR
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- Young Adult, Humans, Aged, Myosin Heavy Chains, Aging, Quadriceps Muscle, Muscle, Skeletal physiology, Muscle Fibers, Skeletal, Muscle Contraction physiology
- Abstract
Specific force (SF) has been shown to be reduced in some but not all studies of human aging using chemically skinned single muscle fibers. This may be due, in part, not only to the health status/physical activity levels of different older cohorts, but also from methodological differences in studying skinned fibers. The aim of the present study was to compare SF in fibers from older hip fracture patients (HFP), healthy master cyclists (MC), and healthy nontrained young adults (YA) using two different activating solutions. Quadriceps muscle samples and 316 fibers were obtained from HFPs (74.6 ± 4 years, n = 5), MCs (74.8 ± 1, n = 5), and YA (25.5 ± 2, n = 6). Fibers were activated (pCa 4.5, 15°C) in solutions containing either 60 mM N-tris(hydroxymethyl)methyl-2-aminoethanesulfonic acid pH buffer (TES) or 20 mM imidazole. SF was determined by normalizing force to fiber cross-sectional area (CSA) assuming either an elliptical or circular shape and to fiber myosin heavy chain content. Activation in TES resulted in significantly higher MHC-I SF in all groups and YA MHC-IIA fibers, irrespective of normalization method. Although there were no differences in SF between the participant groups, the ratio of SF between the TES and imidazole solutions was lower in HFPs compared with YAs (MHC-I P < 0.05; MHC-IIA P = 0.055). Activating solution composition, as opposed to donor characteristics, had a more notable effect on single fiber SF. However, this two-solution approach revealed an age-related difference in sensitivity in HFPs, which was not shown in MCs. This suggests further novel approaches may be required to probe age/activity-related differences in muscle contractile quality. NEW & NOTEWORTHY Whether specific force (SF) decreases with advancing age in human single skeletal muscle fibers is uncertain. Equivocal published findings may be due to the different physical activity levels of the elderly cohorts studied and/or different chemical solutions used to measure force. We compared single fiber SF between young adults, elderly cyclists, and hip fracture patients (HFP) using two solutions. The solution used significantly affected force and revealed a difference in sensitivity of HFP muscle fibers.
- Published
- 2023
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22. Barriers and facilitators to use of compression therapy by people with venous leg ulcers: A qualitative exploration.
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Perry C, Atkinson RA, Griffiths J, Wilson PM, Lavallée JF, Cullum N, and Dumville JC
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- Humans, Wound Healing, Treatment Outcome, Health Care Costs, Qualitative Research, Varicose Ulcer therapy, Leg Ulcer
- Abstract
Aims: To explore barriers to, and facilitators of, adherence to compression therapy, from the perspective of people with venous leg ulcers., Design: An interpretive, qualitative, descriptive study involving interviews with patients., Methods: Participants were purposively sampled from respondents to a survey exploring attitudes to compression therapy in people with venous leg ulcers. Sampling continued until data saturation: 25 interviews between December 2019 and July 2020. Inductive thematic analysis of interview transcripts was undertaken to create a framework for the data, followed by deductive analysis informed by the Common-Sense Model of Self-Regulation., Results: A range of knowledge and understanding about the cause of venous leg ulcers and the mechanisms of compression therapy was demonstrated, which was not particularly related to adherence. Participants talked about their experience with different compression methods and their concerns about the length of time healing could take. They also spoke about aspects of the organization of services which affected their care., Conclusion: Identifying specific, individual barriers/facilitators to compression therapy is not simple, rather factors combine to make adherence more or less likely or possible. There was no clear relationship between an understanding of the cause of VLUs or the mechanism of compression therapy and adherence; different compression therapies presented different challenges for patients; unintentional non-adherence was frequently mentioned; and the organization of services could impact on adherence. Ways in which people could be supported to adhere to compression therapy are indicated. Implications for practice include issues relating to communication with patients; taking into account patients' lifestyles and ensuring that they know about useful 'aids'; providing services that are accessible and provide continuity of appropriately trained staff; minimizing unintentional non-adherence; and acknowledging that healthcare professionals will always need to support/advise those who cannot tolerate compression., Impact: Compression therapy is a cost-effective, evidence-based treatment for venous leg ulcers. However, there is evidence that patients do not always adhere to this therapy and there is limited research investigating reasons why patients do not wear compression. The study found no clear relationship between an understanding of the cause of VLUs or the mechanism of compression therapy and adherence; that different compression therapies presented different challenges for patients; that unintentional non-adherence was frequently mentioned and that the organization of services could impact on adherence. Attending to these findings offers the opportunity to increase the proportion of people undergoing appropriate compression therapy and achieving complete wound healing, the main outcome desired by this group., Patient/public Contribution: A patient representative sits on the Study Steering Group, contributing to the work from developing the study protocol and interview schedule to interpretation and discussion of findings. Members of a Wounds Research Patient and Public Involvement Forum were consulted about interview questions., (© 2023 The Authors. Journal of Advanced Nursing published by John Wiley & Sons Ltd.)
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- 2023
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23. AMPK is a mechano-metabolic sensor linking cell adhesion and mitochondrial dynamics to Myosin-dependent cell migration.
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Crosas-Molist E, Graziani V, Maiques O, Pandya P, Monger J, Samain R, George SL, Malik S, Salise J, Morales V, Le Guennec A, Atkinson RA, Marti RM, Matias-Guiu X, Charras G, Conte MR, Elosegui-Artola A, Holt M, and Sanz-Moreno V
- Subjects
- Humans, Adenosine Triphosphate metabolism, Cell Adhesion, Cell Movement physiology, Myosin Type II metabolism, Oxidative Phosphorylation, Phosphorylation, AMP-Activated Protein Kinases metabolism, Mitochondrial Dynamics, Neoplasms
- Abstract
Cell migration is crucial for cancer dissemination. We find that AMP-activated protein kinase (AMPK) controls cell migration by acting as an adhesion sensing molecular hub. In 3-dimensional matrices, fast-migrating amoeboid cancer cells exert low adhesion/low traction linked to low ATP/AMP, leading to AMPK activation. In turn, AMPK plays a dual role controlling mitochondrial dynamics and cytoskeletal remodelling. High AMPK activity in low adhering migratory cells, induces mitochondrial fission, resulting in lower oxidative phosphorylation and lower mitochondrial ATP. Concurrently, AMPK inactivates Myosin Phosphatase, increasing Myosin II-dependent amoeboid migration. Reducing adhesion or mitochondrial fusion or activating AMPK induces efficient rounded-amoeboid migration. AMPK inhibition suppresses metastatic potential of amoeboid cancer cells in vivo, while a mitochondrial/AMPK-driven switch is observed in regions of human tumours where amoeboid cells are disseminating. We unveil how mitochondrial dynamics control cell migration and suggest that AMPK is a mechano-metabolic sensor linking energetics and the cytoskeleton., (© 2023. The Author(s).)
- Published
- 2023
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24. Water for wound cleansing.
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Fernandez R, Green HL, Griffiths R, Atkinson RA, and Ellwood LJ
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- Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Humans, Middle Aged, Pain drug therapy, Saline Solution, Sodium Chloride therapeutic use, Therapeutic Irrigation methods, Young Adult, Drinking Water, Fractures, Open, Wound Infection prevention & control
- Abstract
Background: Although various solutions have been recommended for cleansing wounds, normal saline is favoured as it is an isotonic solution and is not thought to interfere with the normal healing process. Tap water is commonly used in community settings for cleansing wounds because it is easily accessible, efficient and cost-effective; however, there is an unresolved debate about its use., Objectives: To assess the effects of water for wound cleansing., Search Methods: For this fifth update, in May 2021 we searched the Cochrane Wounds Specialised Register; the Cochrane Central Register of Controlled Trials (CENTRAL); Ovid MEDLINE; Ovid Embase and EBSCO CINAHL Plus. We also searched clinical trials registries for ongoing and unpublished studies, and scanned reference lists of relevant included studies as well as reviews, meta-analyses and health technology reports to identify additional studies. There were no restrictions with respect to language, date of publication or study setting., Selection Criteria: We included all randomised controlled trials (RCTs) that assessed wound cleansing using different types of water (e.g. tap water, distilled, boiled) compared with no cleansing or with other solutions (e.g. normal saline). For this update, we excluded quasi-RCTs, thereby removing some studies which had been included in the previous version of the review., Data Collection and Analysis: Two review authors independently carried out trial selection, data extraction and GRADE assessment of the certainty of evidence., Main Results: We included 13 trials in this update including a total of 2504 participants ranging in age from two to 95 years. Participants in the trials experienced open fractures, surgical wounds, traumatic wounds, anal fissures and chronic wounds. The trials were conducted in six different countries with the majority conducted in India and the USA. Three trials involving 148 participants compared cleansing with tap water with no cleansing. Eight trials involving 2204 participants assessed cleansing with tap water compared with cleansing with normal saline. Two trials involving 152 participants assessed cleansing with distilled water compared with cleansing with normal saline. One trial involving 51 participants also assessed cleansing with cooled boiled water compared with cleansing with normal saline, and cleansing with distilled water compared with cleansing with cooled boiled water. Wound infection: no trials reported on wound infection for the comparison cleansing with tap water versus no cleansing. For all wounds, eight trials found the effect of cleansing with tap water compared with normal saline is uncertain (risk ratio (RR) 0.84, 95% confidence interval (CI) 0.59 to 1.19); very low-certainty evidence. Two trials comparing the use of distilled water with normal saline for cleansing open fractures found that the effect on the number of fractures that were infected is uncertain (RR 0.70, 95% CI 0.45 to 1.09); very low-certainty evidence. One trial compared the use of cooled boiled water with normal saline for cleansing open fractures and found that the effect on the number of fractures infected is uncertain (RR 0.83, 95% CI 0.37 to 1.87); very low-certainty evidence. This trial also compared the use of distilled water with cooled boiled water and found that the effect on the number of fractures infected is uncertain (RR 0.59, 95% CI 0.24 to 1.47); very low-certainty evidence. Wound healing: results from three trials comparing the use of tap water with no wound cleansing demonstrated there may be little or no difference in the number of wounds that did not heal between the groups (RR 1.04, 95% CI 0.95 to 1.14); low-certainty evidence. The effect of tap water compared with normal saline is uncertain; two trials were pooled (RR 0.57, 95% CI 0.30 to 1.07) but the certainty of the evidence is very low. Results from one study comparing the use of distilled water with normal saline for cleansing open fractures found that there may be little or no difference in the number of fractures that healed (RR could not be estimated, all wounds healed); the certainty of the evidence is low. Reduction in wound size: the effect of cleansing with tap water compared with normal saline on wound size reduction is uncertain (RR 0.97, 95% CI 0.56 to 1.68); the certainty of the evidence is very low. Rate of wound healing: the effect of cleansing with tap water compared with normal saline on wound healing rate is uncertain (mean difference (MD) -3.06, 95% CI -6.70 to 0.58); the certainty of the evidence is very low., Costs: two trials reported cost analyses but the cost-effectiveness of tap water compared with the use of normal saline is uncertain; the certainty of the evidence is very low. Pain: results from one study comparing the use of tap water with no cleansing for acute and chronic wounds showed that there may be little or no difference in pain scores. The certainty of the evidence is low. Patient satisfaction: results from one study comparing the use of tap water with no cleansing for acute and chronic wounds showed that there may be little or no difference in patient satisfaction. The certainty of evidence is low. The effect of cleansing with tap water compared with normal saline is uncertain as the certainty of the evidence is very low., Authors' Conclusions: All the evidence identified in the review was low or very low certainty. Cleansing with tap water may make little or no difference to wound healing compared with no cleansing; there are no data relating to the impact on wound infection. The effects of cleansing with tap water, cooled boiled water or distilled water compared with cleansing with saline are uncertain, as is the effect of distilled water compared with cooled boiled water. Data for other outcomes are limited across all the comparisons considered and are either uncertain or suggest that there may be little or no difference in the outcome., (Copyright © 2022 The Cochrane Collaboration. Published by John Wiley & Sons, Ltd.)
- Published
- 2022
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25. What promotes or prevents greater use of appropriate compression in people with venous leg ulcers? A qualitative interview study with nurses in the north of England using the Theoretical Domains Framework.
- Author
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Perry C, Atkinson RA, Griffiths J, Wilson PM, Lavallée JF, Mullings J, Cullum N, and Dumville JC
- Subjects
- England, Humans, Qualitative Research, State Medicine, Leg Ulcer therapy, Varicose Ulcer therapy
- Abstract
Objectives: To investigate factors that promote and prevent the use of compression therapy in people with venous leg ulcers., Design: Qualitative interview study with nurses using the Theoretical Domains Framework (TDF)., Setting: Three National Health Service Trusts in England., Participants: Purposive sample of 15 nurses delivering wound care., Results: Nurses described factors which made provision of compression therapy challenging. Organisational barriers (TDF domains environmental context and resources/knowledge, skills/behavioural regulation) included heavy/increasing caseloads; lack of knowledge/skills and the provision of training; and prescribing issues (variations in bandaging systems/whether nurses could prescribe). Absence of specialist leg ulcer services to refer patients into was perceived as a barrier to providing optimal care by some community-based nurses. Compression use was perceived to be facilitated by clinics for timely initial assessment; continuity of staff and good liaison between vascular/leg ulcer clinics and community teams; clear local policies and care pathways; and opportunities for training such as 'shadowing' in vascular/leg ulcer clinics. Patient engagement barriers (TDF domains goals/beliefs about consequences) focused on getting patients 'on board' with compression, and supporting them in using it. Clear explanations were seen as key in promoting compression use., Conclusions: Rising workload pressures present significant challenges to enhancing leg ulcer services. There may be opportunities to develop facilitated approaches to enable community nursing teams to make changes to practice, enhancing quality of patient care. The majority of venous leg ulcers could be managed in the community without referral to specialist community services if issues relating to workloads/skills/training are addressed. Barriers to promoting compression use could also be targeted, for example, through the development of clear patient information leaflets. While the patient engagement barriers may be easier/quicker to address than organisational barriers, unless organisational barriers are addressed it seems unlikely that all people who would benefit from compression therapy will receive it., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2022. Re-use permitted under CC BY. Published by BMJ.)
- Published
- 2022
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26. One-step, kit-based radiopharmaceuticals for molecular SPECT imaging: a versatile diphosphine chelator for 99m Tc radiolabelling of peptides.
- Author
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Hungnes IN, Al-Salemee F, Gawne PJ, Eykyn T, Atkinson RA, Terry SYA, Clarke F, Blower PJ, Pringle PG, and Ma MT
- Subjects
- Animals, Arthritis, Rheumatoid diagnostic imaging, Arthritis, Rheumatoid metabolism, Female, Humans, Integrin alphaVbeta3 chemistry, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Transgenic, Tomography, Emission-Computed, Single-Photon, Mice, Chelating Agents administration & dosage, Chelating Agents chemistry, Chelating Agents pharmacokinetics, Peptides, Cyclic administration & dosage, Peptides, Cyclic chemistry, Peptides, Cyclic pharmacokinetics, Phosphines administration & dosage, Phosphines chemistry, Phosphines pharmacokinetics, Radiopharmaceuticals administration & dosage, Radiopharmaceuticals chemistry, Radiopharmaceuticals pharmacokinetics, Technetium administration & dosage, Technetium chemistry, Technetium pharmacokinetics
- Abstract
Radiotracers labelled with technetium-99m (
99m Tc) enable accessible diagnostic imaging of disease, provided that radiotracer preparation is simple. Whilst99m Tc radiopharmaceuticals for imaging perfusion are routinely prepared from kits, and regularly used in healthcare, there are no99m Tc-labelled receptor-targeted radiopharmaceuticals in widespread clinical use. This is in part due to the multistep radiosyntheses required for the latter. We demonstrate that the diphosphine, 2,3-bis(diphenylphosphino)maleic anhydride (BMA), is an excellent platform for preparation of kit-based, receptor-targeted99m Tc-labelled radiotracers: its conjugates are simple to prepare and can be easily labelled with99m Tc using one-step, kit-based protocols. Here, reaction of BMA with the αv β3 -integrin receptor targeted cyclic peptide, Arg-Gly-Asp-DPhe-Lys (RGD), provided the first diphosphine-peptide conjugate, DP-RGD. DP-RGD was incorporated into a "kit", and addition of a saline solution containing99m TcO4 - to this kit, followed by heating, furnished the radiotracer [99m TcO2 (DP-RGD)2 ]+ in consistently high radiochemical yields (>90%). The analogous [ReO2 (DP-RGD)2 ]+ compound was prepared and characterised, revealing that both [99m TcO2 (DP-RGD)2 ]+ and [ReO2 (DP-RGD)2 ]+ consist of a mixture of cis and trans geometric isomers. Finally, [99m TcO2 (DP-RGD)2 ]+ exhibited high metabolic stability, and selectively targeted αv β3 -integrin receptors, enabling in vivo SPECT imaging of αv β3 -integrin receptor expression in mice.- Published
- 2021
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27. Dipeptide inhibitors of the prostate specific membrane antigen (PSMA): A comparison of urea and thiourea derivatives.
- Author
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Young JD, Ma MT, Eykyn TR, Atkinson RA, Abbate V, Cilibrizzi A, Hider RC, and Blower PJ
- Subjects
- Antigens, Surface metabolism, Dipeptides chemical synthesis, Dipeptides chemistry, Dose-Response Relationship, Drug, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors chemistry, Glutamate Carboxypeptidase II metabolism, Humans, Molecular Structure, Structure-Activity Relationship, Urea analogs & derivatives, Urea chemistry, Dipeptides pharmacology, Enzyme Inhibitors pharmacology, Glutamate Carboxypeptidase II antagonists & inhibitors, Urea pharmacology
- Abstract
Glutamate carboxypeptidase II (GCP(II)), also known as the prostate-specific membrane antigen (PSMA), is a transmembrane zinc(II) metalloenzyme overexpressed in prostate cancer. Inhibitors of this receptor are used to target molecular imaging agents and molecular radiotherapy agents to prostate cancer and if the affinity of inhibitors for GCP(II)/PSMA could be improved, targeting might also improve. Compounds containing the dipeptide OH-Lys-C(O)-Glu-OH (compound 3), incorporating a urea motif, have high affinity for GCP(II)/PSMA. We hypothesized that substituting the zinc-coordinating urea group for a thiourea group, thus incorporating a sulfur atom, could facilitate stronger binding to zinc(II) within the active site, and thus improve affinity for GCP(II)/PSMA. A structurally analogous urea and thiourea pair (HO-Glu-C(O)-Glu-OH - compound 5 and HO-Glu-C(S)-Glu-OH - compound 6) were synthesized and the inhibitory concentration (IC
50 ) of each compound measured with a cell-based assay, allowing us to refute the hypothesis: the thiourea analogue showed 100-fold weaker binding to PSMA than the urea analogue., (Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.)- Published
- 2021
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28. A pleurocidin analogue with greater conformational flexibility, enhanced antimicrobial potency and in vivo therapeutic efficacy.
- Author
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Manzo G, Hind CK, Ferguson PM, Amison RT, Hodgson-Casson AC, Ciazynska KA, Weller BJ, Clarke M, Lam C, Man RCH, Shaughnessy BGO, Clifford M, Bui TT, Drake AF, Atkinson RA, Lam JKW, Pitchford SC, Page CP, Phoenix DA, Lorenz CD, Sutton JM, and Mason AJ
- Subjects
- Animals, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents therapeutic use, Disease Models, Animal, Fish Proteins chemistry, Fish Proteins therapeutic use, HEK293 Cells, HeLa Cells, Humans, Hydrogen Bonding, Lung Diseases microbiology, Male, Membranes, Artificial, Mice, Mice, Inbred C57BL, Microbial Sensitivity Tests, Pore Forming Cytotoxic Proteins chemistry, Pore Forming Cytotoxic Proteins therapeutic use, Protein Conformation, Anti-Bacterial Agents pharmacology, Fish Proteins pharmacology, Lung Diseases drug therapy, Pore Forming Cytotoxic Proteins pharmacology
- Abstract
Antimicrobial peptides (AMPs) are a potential alternative to classical antibiotics that are yet to achieve a therapeutic breakthrough for treatment of systemic infections. The antibacterial potency of pleurocidin, an AMP from Winter Flounder, is linked to its ability to cross bacterial plasma membranes and seek intracellular targets while also causing membrane damage. Here we describe modification strategies that generate pleurocidin analogues with substantially improved, broad spectrum, antibacterial properties, which are effective in murine models of bacterial lung infection. Increasing peptide-lipid intermolecular hydrogen bonding capabilities enhances conformational flexibility, associated with membrane translocation, but also membrane damage and potency, most notably against Gram-positive bacteria. This negates their ability to metabolically adapt to the AMP threat. An analogue comprising D-amino acids was well tolerated at an intravenous dose of 15 mg/kg and similarly effective as vancomycin in reducing EMRSA-15 lung CFU. This highlights the therapeutic potential of systemically delivered, bactericidal AMPs.
- Published
- 2020
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29. Organocatalytic Access to a cis -Cyclopentyl-γ-amino Acid: An Intriguing Model of Selectivity and Formation of a Stable 10/12-Helix from the Corresponding γ/α-Peptide.
- Author
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Fanelli R, Berta D, Földes T, Rosta E, Atkinson RA, Hofmann HJ, Shankland K, and Cobb AJA
- Subjects
- Catalysis, Crystallography, X-Ray, Stereoisomerism, Amino Acids chemistry, Organic Chemicals chemistry, Peptides chemistry
- Abstract
In this study, we have developed a highly enantioselective organocatalytic route to the (1 S ,2 R )-2-(aminomethyl)cyclopentane-1-carboxylic acid monomer precursor, which has a cis -configuration between the C- and N-termini around the cyclopentane core. Kinetic measurements show that the product distribution changes over time due to epimerization of the C1 center. Computations suggest the cis -selectivity is a result of selective C-C bond formation, while subsequent steps appear to influence the selectivity at higher temperature. The resulting γ-amino acid residue was incorporated into a novel γ/α-peptide, which forms a well-ordered 10/12-helix with alternate H-bond directionality in spite of the smallest value of the ζ-angle yet observed for a helix of this type. This highly defined structure is also a result of the narrow range of potential ζ-angles in our monomer. In contrast, the larger range of potential ζ-values observed for the corresponding trans -system can be fulfilled by several competing helical structures.
- Published
- 2020
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30. Microbial functional change is linked with clinical outcomes after capsular fecal transplant in cirrhosis.
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Bajaj JS, Salzman N, Acharya C, Takei H, Kakiyama G, Fagan A, White MB, Gavis EA, Holtz ML, Hayward M, Nittono H, Hylemon PB, Cox IJ, Williams R, Taylor-Robinson SD, Sterling RK, Matherly SC, Fuchs M, Lee H, Puri P, Stravitz RT, Sanyal AJ, Ajayi L, Le Guennec A, Atkinson RA, Siddiqui MS, Luketic V, Pandak WM, Sikaroodi M, and Gillevet PM
- Subjects
- Adult, Aged, Capsules, Feces microbiology, Female, Hepatic Encephalopathy etiology, Hepatic Encephalopathy microbiology, Hepatic Encephalopathy physiopathology, Humans, Liver Cirrhosis complications, Liver Cirrhosis microbiology, Liver Cirrhosis physiopathology, Male, Middle Aged, Placebos administration & dosage, Treatment Outcome, United Kingdom, Young Adult, Cognition physiology, Fecal Microbiota Transplantation methods, Gastrointestinal Microbiome physiology, Hepatic Encephalopathy therapy, Liver Cirrhosis therapy
- Abstract
BACKGROUNDHepatic encephalopathy (HE) is associated with poor outcomes. A prior randomized, pilot trial demonstrated safety after oral capsular fecal microbial transplant (FMT) in HE, with favorable changes in microbial composition and cognition. However, microbial functional changes are unclear. The aim of this study was to determine the effect of FMT on the gut-brain axis compared with placebo, using microbial function based on bile acids (BAs), inflammation (serum IL-6, LPS-binding protein [LBP]), and their association with EncephalApp.METHODSTwenty cirrhotic patients were randomized 1:1 into groups that received 1-time FMT capsules from a donor enriched in Lachnospiraceae and Ruminococcaceae or placebo capsules, with 5-month follow-up for safety outcomes. Stool microbiota and BA; serum IL-6, BA, and LBP; and EncephalApp were analyzed at baseline and 4 weeks after FMT/placebo. Correlation networks among microbiota, BAs, EncephalApp, IL-6, and LBP were performed before/after FMT.RESULTSFMT-assigned participants had 1 HE recurrence and 2 unrelated infections. Six placebo-assigned participants developed negative outcomes. FMT, but not placebo, was associated with reduced serum IL-6 and LBP and improved EncephalApp. FMT-assigned participants demonstrated higher deconjugation and secondary BA formation in feces and serum compared with baseline. No change was seen in placebo. Correlation networks showed greater complexity after FMT compared with baseline. Beneficial taxa, such as Ruminococcaceae, Verrucomicrobiaceae, and Lachnospiraceae, were correlated with cognitive improvement and decrease in inflammation after FMT. Fecal/serum secondary/primary ratios and PiCRUST secondary BA pathways did not increase in participants who developed poor outcomes.CONCLUSIONGut microbial function in cirrhosis is beneficially affected by capsular FMT, with improved inflammation and cognition. Lower secondary BAs in FMT recipients could select for participants who develop negative outcomes.TRIAL REGISTRATIONClinicaltrials.gov NCT03152188.FUNDINGNational Center for Advancing Translational Sciences NIH grant R21TR002024, VA Merit Review grant 2I0CX001076, the United Kingdom National Institute for Health Research Biomedical Facility at Imperial College London, the British Heart Foundation, Wellcome Trust, and King's College London.
- Published
- 2019
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31. Temporin L and aurein 2.5 have identical conformations but subtly distinct membrane and antibacterial activities.
- Author
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Manzo G, Ferguson PM, Hind CK, Clifford M, Gustilo VB, Ali H, Bansal SS, Bui TT, Drake AF, Atkinson RA, Sutton JM, Lorenz CD, Phoenix DA, and Mason AJ
- Subjects
- Anti-Bacterial Agents pharmacology, Antimicrobial Cationic Peptides pharmacology, Ion Transport, Molecular Dynamics Simulation, Protein Conformation, alpha-Helical, Unilamellar Liposomes chemistry, Anti-Bacterial Agents chemistry, Antimicrobial Cationic Peptides chemistry, Cell Membrane drug effects
- Abstract
Frogs such as Rana temporaria and Litoria aurea secrete numerous closely related antimicrobial peptides (AMPs) as an effective chemical dermal defence. Damage or penetration of the bacterial plasma membrane is considered essential for AMP activity and such properties are commonly ascribed to their ability to form secondary amphipathic, α-helix conformations in membrane mimicking milieu. Nevertheless, despite the high similarity in physical properties and preference for adopting such conformations, the spectrum of activity and potency of AMPs often varies considerably. Hence distinguishing apparently similar AMPs according to their behaviour in, and effects on, model membranes will inform understanding of primary-sequence-specific antimicrobial mechanisms. Here we use a combination of molecular dynamics simulations, circular dichroism and patch-clamp to investigate the basis for differing anti-bacterial activities in representative AMPs from each species; temporin L and aurein 2.5. Despite adopting near identical, α-helix conformations in the steady-state in a variety of membrane models, these two AMPs can be distinguished both in vitro and in silico based on their dynamic interactions with model membranes, notably their differing conformational flexibility at the N-terminus, ability to form higher order aggregates and the characteristics of induced ion conductance. Taken together, these differences provide an explanation of the greater potency and broader antibacterial spectrum of activity of temporin L over aurein 2.5. Consequently, while the secondary amphipathic, α-helix conformation is a key determinant of the ability of a cationic AMP to penetrate and disrupt the bacterial plasma membrane, the exact mechanism, potency and spectrum of activity is determined by precise structural and dynamic contributions from specific residues in each AMP sequence.
- Published
- 2019
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32. 15-deoxy-Δ 12,14 -Prostaglandin J 2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism.
- Author
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Abis G, Charles RL, Kopec J, Yue WW, Atkinson RA, Bui TTT, Lynham S, Popova S, Sun YB, Fraternali F, Eaton P, and Conte MR
- Subjects
- Allosteric Regulation, Amino Acid Sequence, Amino Acid Substitution, Catalytic Domain genetics, Crystallography, X-Ray, Cysteine chemistry, Enzyme Inhibitors pharmacology, Enzyme Stability drug effects, Epoxide Hydrolases chemistry, Epoxide Hydrolases genetics, Humans, Magnetic Resonance Spectroscopy, Models, Molecular, Mutagenesis, Site-Directed, Prostaglandin D2 pharmacology, Protein Domains, Sequence Alignment, Solubility, Epoxide Hydrolases antagonists & inhibitors, Prostaglandin D2 analogs & derivatives
- Abstract
Human soluble epoxide hydrolase (hsEH) is an enzyme responsible for the inactivation of bioactive epoxy fatty acids, and its inhibition is emerging as a promising therapeutical strategy to target hypertension, cardiovascular disease, pain and insulin sensitivity. Here, we uncover the molecular bases of hsEH inhibition mediated by the endogenous 15-deoxy-Δ
12,14 -Prostaglandin J2 (15d-PGJ2 ). Our data reveal a dual inhibitory mechanism, whereby hsEH can be inhibited by reversible docking of 15d-PGJ2 in the catalytic pocket, as well as by covalent locking of the same compound onto cysteine residues C423 and C522, remote to the active site. Biophysical characterisations allied with in silico investigations indicate that the covalent modification of the reactive cysteines may be part of a hitherto undiscovered allosteric regulatory mechanism of the enzyme. This study provides insights into the molecular modes of inhibition of hsEH epoxy-hydrolytic activity and paves the way for the development of new allosteric inhibitors., Competing Interests: Competing interestsThe authors declare no competing interests.- Published
- 2019
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33. LARP4A recognizes polyA RNA via a novel binding mechanism mediated by disordered regions and involving the PAM2w motif, revealing interplay between PABP, LARP4A and mRNA.
- Author
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Cruz-Gallardo I, Martino L, Kelly G, Atkinson RA, Trotta R, De Tito S, Coleman P, Ahdash Z, Gu Y, Bui TTT, and Conte MR
- Subjects
- Amino Acid Motifs, Autoantigens genetics, Autoantigens metabolism, Binding Sites, Cloning, Molecular, Escherichia coli genetics, Escherichia coli metabolism, Gene Expression, Genetic Vectors chemistry, Genetic Vectors metabolism, Humans, Kinetics, Models, Molecular, Poly A genetics, Poly A metabolism, Poly(A)-Binding Proteins genetics, Poly(A)-Binding Proteins metabolism, Protein Binding, Protein Conformation, alpha-Helical, Protein Conformation, beta-Strand, Protein Interaction Domains and Motifs, RNA, Messenger genetics, RNA, Messenger metabolism, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Ribonucleoproteins genetics, Ribonucleoproteins metabolism, Substrate Specificity, Thermodynamics, SS-B Antigen, Autoantigens chemistry, Poly A chemistry, Poly(A)-Binding Proteins chemistry, RNA, Messenger chemistry, RNA-Binding Proteins chemistry, Ribonucleoproteins chemistry
- Abstract
LARP4A belongs to the ancient RNA-binding protein superfamily of La-related proteins (LARPs). In humans, it acts mainly by stabilizing mRNAs, enhancing translation and controlling polyA lengths of heterologous mRNAs. These activities are known to implicate its association with mRNA, protein partners and translating ribosomes, albeit molecular details are missing. Here, we characterize the direct interaction between LARP4A, oligoA RNA and the MLLE domain of the PolyA-binding protein (PABP). Our study shows that LARP4A-oligoA association entails novel RNA recognition features involving the N-terminal region of the protein that exists in a semi-disordered state and lacks any recognizable RNA-binding motif. Against expectations, we show that the La module, the conserved RNA-binding unit across LARPs, is not the principal determinant for oligoA interaction, only contributing to binding to a limited degree. Furthermore, the variant PABP-interacting motif 2 (PAM2w) featured in the N-terminal region of LARP4A was found to be important for both RNA and PABP recognition, revealing a new role for this protein-protein binding motif. Our analysis demonstrates the mutual exclusive nature of the PAM2w-mediated interactions, thereby unveiling a tantalizing interplay between LARP4A, polyA and PABP., (© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2019
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34. Resonance assignment of human LARP4A La module.
- Author
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Cruz-Gallardo I, Martino L, Trotta R, De Tito S, Kelly G, Atkinson RA, Randazzo A, and Conte MR
- Subjects
- Humans, Protein Structure, Secondary, SS-B Antigen, Autoantigens chemistry, Nuclear Magnetic Resonance, Biomolecular, Ribonucleoproteins chemistry
- Abstract
Human LARP4A belongs to a superfamily of RNA binding proteins called La-related proteins (LARPs). Whilst being a positive regulator of protein synthesis and a promoter of mRNA stability, LARP4A also controls cell morphology and motility in human breast and prostate cancer cells. All LARPs share a characteristic RNA binding unit named the La-module, which despite a high level of primary structure conservation exhibits a great versatility in RNA target selection. Human LARP4A La-module is the most divergent compared with other LARPs and its RNA recognition properties have only recently started to be revealed. Given the key role of LARP4A protein in cancer cell biology, we have initiated a complete NMR characterisation of its La-module and here we report the assignment of
1 H,15 N and13 C resonances resulting from our studies.- Published
- 2019
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35. Metabolomic and lipidomic plasma profile changes in human participants ascending to Everest Base Camp.
- Author
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O'Brien KA, Atkinson RA, Richardson L, Koulman A, Murray AJ, Harridge SDR, Martin DS, Levett DZH, Mitchell K, Mythen MG, Montgomery HE, Grocott MPW, Griffin JL, and Edwards LM
- Subjects
- Adult, Bayes Theorem, Body Weight physiology, Female, Humans, Lipid Metabolism physiology, Male, Middle Aged, Oxygen metabolism, Triglycerides blood, Lipidomics methods, Metabolomics methods
- Abstract
At high altitude oxygen delivery to the tissues is impaired leading to oxygen insufficiency (hypoxia). Acclimatisation requires adjustment to tissue metabolism, the details of which remain incompletely understood. Here, metabolic responses to progressive environmental hypoxia were assessed through metabolomic and lipidomic profiling of human plasma taken from 198 human participants before and during an ascent to Everest Base Camp (5,300 m). Aqueous and lipid fractions of plasma were separated and analysed using proton (
1 H)-nuclear magnetic resonance spectroscopy and direct infusion mass spectrometry, respectively. Bayesian robust hierarchical regression revealed decreasing isoleucine with ascent alongside increasing lactate and decreasing glucose, which may point towards increased glycolytic rate. Changes in the lipid profile with ascent included a decrease in triglycerides (48-50 carbons) associated with de novo lipogenesis, alongside increases in circulating levels of the most abundant free fatty acids (palmitic, linoleic and oleic acids). Together, this may be indicative of fat store mobilisation. This study provides the first broad metabolomic account of progressive exposure to environmental hypobaric hypoxia in healthy humans. Decreased isoleucine is of particular interest as a potential contributor to muscle catabolism observed with exposure to hypoxia at altitude. Substantial changes in lipid metabolism may represent important metabolic responses to sub-acute exposure to environmental hypoxia.- Published
- 2019
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36. Minor sequence modifications in temporin B cause drastic changes in antibacterial potency and selectivity by fundamentally altering membrane activity.
- Author
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Manzo G, Ferguson PM, Gustilo VB, Hind CK, Clifford M, Bui TT, Drake AF, Atkinson RA, Sutton JM, Batoni G, Lorenz CD, Phoenix DA, and Mason AJ
- Subjects
- Amino Acid Sequence, Cell Membrane drug effects, Electric Conductivity, Lipid Bilayers chemistry, Micelles, Microbial Sensitivity Tests, Molecular Dynamics Simulation, Protein Conformation, Sodium Dodecyl Sulfate, Structure-Activity Relationship, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents pharmacology, Antimicrobial Cationic Peptides chemistry, Antimicrobial Cationic Peptides pharmacology, Cell Membrane metabolism
- Abstract
Antimicrobial peptides (AMPs) are a potential source of new molecules to counter the increase in antimicrobial resistant infections but a better understanding of their properties is required to understand their native function and for effective translation as therapeutics. Details of the mechanism of their interaction with the bacterial plasma membrane are desired since damage or penetration of this structure is considered essential for AMPs activity. Relatively modest modifications to AMPs primary sequence can induce substantial changes in potency and/or spectrum of activity but, hitherto, have not been predicted to substantially alter the mechanism of interaction with the bacterial plasma membrane. Here we use a combination of molecular dynamics simulations, circular dichroism, solid-state NMR and patch clamp to investigate the extent to which temporin B and its analogues can be distinguished both in vitro and in silico on the basis of their interactions with model membranes. Enhancing the hydrophobicity of the N-terminus and cationicity of the C-terminus in temporin B improves its membrane activity and potency against both Gram-negative and Gram-positive bacteria. In contrast, enhancing the cationicity of the N-terminus abrogates its ability to trigger channel conductance and renders it ineffective against Gram-positive bacteria while nevertheless enhancing its potency against Escherichia coli. Our findings suggest even closely related AMPs may target the same bacterium with fundamentally differing mechanisms of action.
- Published
- 2019
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37. Controlling the dynamics of the Nek2 leucine zipper by engineering of "kinetic" disulphide bonds.
- Author
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Gutmans DS, Whittaker SB, Asiani K, Atkinson RA, Oregioni A, and Pfuhl M
- Subjects
- Crystallography, X-Ray, Humans, NIMA-Related Kinases genetics, Nuclear Magnetic Resonance, Biomolecular, Amino Acid Substitution, Disulfides chemistry, Leucine Zippers, NIMA-Related Kinases chemistry
- Abstract
Nek2 is a dimeric serine/ threonine protein kinase that belongs to the family of NIMA-related kinases (Neks). Its N-terminal catalytic domain and its C-terminal regulatory region are bridged by a leucine zipper, which plays an important role in the activation of Nek2's catalytic activity. Unusual conformational dynamics on the intermediary/slow timescale has thwarted all attempts so far to determine the structure of the Nek2 leucine zipper by means of X-ray crystallography and Nuclear Magnetic Resonance (NMR). Disulfide engineering, the strategic placement of non-native disulfide bonds into flexible regions flanking the coiled coil, was used to modulate the conformational exchange dynamics of this important dimerization domain. The resulting reduction in exchange rate leads to substantial improvements of important features in NMR spectra, such as line width, coherence transfer leakage and relaxation. These effects were comprehensively analyzed for the wild type protein, two single disulfide bond-bearing mutants and another double disulfide bonds-carrying mutant. Furthermore, exchange kinetics were measured across a wide temperature range, allowing for a detailed analysis of activation energy (ΔG‡) and maximal rate constant (k'ex). For one mutant carrying a disulfide bond at its C-terminus, a full backbone NMR assignment could be obtained for both conformers, demonstrating the benefits of the disulfide engineering. Our study demonstrates the first successful application of 'kinetic' disulfide bonds for the purpose of controlling the adverse effects of protein dynamics. Firstly, this provides a promising, robust platform for the full structural and functional investigation of the Nek2 leucine zipper in the future. Secondly, this work broadens the toolbox of protein engineering by disulfide bonds through the addition of a kinetic option in addition to the well-established thermodynamic uses of disulfide bonds., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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38. Structural and Functional Insights into Bacillus subtilis Sigma Factor Inhibitor, CsfB.
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Martínez-Lumbreras S, Alfano C, Evans NJ, Collins KM, Flanagan KA, Atkinson RA, Krysztofinska EM, Vydyanath A, Jackter J, Fixon-Owoo S, Camp AH, and Isaacson RL
- Subjects
- Amino Acid Sequence, Bacillus subtilis genetics, Bacillus subtilis metabolism, Binding Sites, Cations, Divalent, Cloning, Molecular, Crystallography, X-Ray, Escherichia coli genetics, Escherichia coli metabolism, Genetic Vectors chemistry, Genetic Vectors metabolism, Models, Molecular, Mutation, Protein Binding, Protein Conformation, alpha-Helical, Protein Conformation, beta-Strand, Protein Interaction Domains and Motifs, Protein Isoforms antagonists & inhibitors, Protein Isoforms chemistry, Protein Isoforms genetics, Protein Isoforms metabolism, Protein Multimerization, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Repressor Proteins genetics, Repressor Proteins metabolism, Sequence Alignment, Sequence Homology, Amino Acid, Sigma Factor antagonists & inhibitors, Sigma Factor genetics, Sigma Factor metabolism, Spores, Bacterial genetics, Spores, Bacterial metabolism, Zinc metabolism, Bacillus subtilis chemistry, Gene Expression Regulation, Bacterial, Repressor Proteins chemistry, Sigma Factor chemistry, Spores, Bacterial chemistry, Zinc chemistry
- Abstract
Global changes in bacterial gene expression can be orchestrated by the coordinated activation/deactivation of alternative sigma (σ) factor subunits of RNA polymerase. Sigma factors themselves are regulated in myriad ways, including via anti-sigma factors. Here, we have determined the solution structure of anti-sigma factor CsfB, responsible for inhibition of two alternative sigma factors, σ
G and σE , during spore formation by Bacillus subtilis. CsfB assembles into a symmetrical homodimer, with each monomer bound to a single Zn2+ ion via a treble-clef zinc finger fold. Directed mutagenesis indicates that dimer formation is critical for CsfB-mediated inhibition of both σG and σE , and we have characterized these interactions in vitro. This work represents an advance in our understanding of how CsfB mediates inhibition of two alternative sigma factors to drive developmental gene expression in a bacterium., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2018
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39. Opportunities for better value wound care: a multiservice, cross-sectional survey of complex wounds and their care in a UK community population.
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Gray TA, Rhodes S, Atkinson RA, Rothwell K, Wilson P, Dumville JC, and Cullum NA
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents therapeutic use, Bandages statistics & numerical data, Beds statistics & numerical data, Child, Child, Preschool, Cross-Sectional Studies, England epidemiology, Female, Humans, Infant, Male, Middle Aged, Surveys and Questionnaires, Wound Healing, Wounds and Injuries complications, Young Adult, Pressure Ulcer epidemiology, Pressure Ulcer therapy, Varicose Ulcer epidemiology, Varicose Ulcer therapy, Wounds and Injuries epidemiology, Wounds and Injuries therapy
- Abstract
Background: Complex wounds impose a substantial health economic burden worldwide. As wound care is managed across multiple settings by a range of healthcare professionals with varying levels of expertise, the actual care delivered can vary considerably and result in the underuse of evidence-based interventions, the overuse of interventions supported by limited evidence and low value healthcare., Objectives: To quantify the number, type and management of complex wounds being treated over a two-week period and to explore variations in care by comparing current practices in wound assessment, prevention and treatment., Design: A multiservice cross-sectional survey., Setting: This survey spanned eight community services within five Northern England NHS Trusts., Results: The point prevalence of complex wounds in this community-based population was 16.4 per 10 000 (95% CI 15.9 to 17.0). Based on data from 3179 patients, antimicrobial dressings were being used as the primary dressing for 36% of patients with complex wounds. Forty per cent of people with leg ulcers either had not received the recommended Doppler-aided Ankle Brachial Pressure Index assessment or it was unclear whether a recording had been taken. Thirty-one per cent of patients whose most severe wound was a venous leg ulcer were not receiving compression therapy, and there was limited use of two-layer compression hosiery. Of patients with a pressure ulcer, 39% were not using a pressure-relieving cushion or mattress., Conclusions: Marked variations were found in care, underuse of evidence-based practices and overuse of practices that are not supported by robust research evidence. Significant opportunities for delivering better value wound care therefore exist. Efforts should now focus on developing strategies to identify, assess and disinvest from products and practices supported by little or no evidence and enhance the uptake of those that are., Competing Interests: Competing interests: None declared., (© Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.)
- Published
- 2018
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40. Interventions for pressure ulcers: a summary of evidence for prevention and treatment.
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Atkinson RA and Cullum NA
- Subjects
- Global Health, Humans, PubMed, Randomized Controlled Trials as Topic, Pressure Ulcer etiology, Pressure Ulcer therapy, Spinal Cord Injuries complications
- Abstract
Study Design: Narrative review., Objectives: Pressure ulcers are a common complication in people with reduced sensation and limited mobility, occurring frequently in those who have sustained spinal cord injury. This narrative review summarises the evidence relating to interventions for the prevention and treatment of pressure ulcers, in particular from Cochrane systematic reviews. It also aims to highlight the degree to which people with spinal cord injury have been included as participants in randomised controlled trials included in Cochrane reviews of such interventions., Setting: Global., Methods: The Cochrane library (up to July 2017) was searched for systematic reviews of any type of intervention for the prevention or treatment of pressure ulcers. A search of PubMed (up to July 2017) was undertaken to identify other systematic reviews and additional published trial reports of interventions for pressure ulcer prevention and treatment., Results: The searches revealed 38 published systematic reviews (27 Cochrane and 11 others) and 6 additional published trial reports. An array of interventions is available for clinical use, but few have been evaluated adequately in people with SCI., Conclusions: The effects of most interventions for preventing and treating pressure ulcers in people with spinal cord injury are highly uncertain. Existing evaluations of pressure ulcer interventions include very few participants with spinal cord injury. Subsequently, there is still a need for high-quality randomised trials of such interventions in this patient population.
- Published
- 2018
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41. Human physiological and metabolic responses to an attempted winter crossing of Antarctica: the effects of prolonged hypobaric hypoxia.
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O'Brien KA, Pollock RD, Stroud M, Lambert RJ, Kumar A, Atkinson RA, Green DA, Anton-Solanas A, Edwards LM, and Harridge SDR
- Subjects
- Adiposity, Adult, Altitude Sickness metabolism, Antarctic Regions, Blood Glucose metabolism, Exercise, Extreme Environments, Fatty Acids blood, Humans, Male, Middle Aged, Oxygen Consumption, Pulmonary Gas Exchange, Acclimatization, Altitude Sickness physiopathology, Cold Temperature, Expeditions
- Abstract
An insufficient supply of oxygen to the tissues (hypoxia), as is experienced upon high-altitude exposure, elicits physiological acclimatization mechanisms alongside metabolic remodeling. Details of the integrative adaptive processes in response to chronic hypobaric hypoxic exposure remain to be sufficiently investigated. In this small applied field study, subjects (n = 5, male, age 28-54 years) undertook a 40 week Antarctica expedition in the winter months, which included 24 weeks residing above 2500 m. Measurements taken pre- and postexpedition revealed alterations to glucose and fatty acid resonances within the serum metabolic profile, a 7.8 (±3.6)% increase in respiratory exchange ratio measured during incremental exercise (area under curve, P > 0.01, mean ± SD) and a 2.1(±0.8) % decrease in fat tissue (P < 0.05) postexpedition. This was accompanied by an 11.6 (±1.9) % increase (P > 0.001) in VO
2 max corrected to % lean mass postexpedition. In addition, spine bone mineral density and lung function measures were identified as novel parameters of interest. This study provides, an in-depth characterization of the responses to chronic hypobaric hypoxic exposure in one of the most hostile environments on Earth., (© 2018 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of The Physiological Society and the American Physiological Society.)- Published
- 2018
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42. Intracavity lavage and wound irrigation for prevention of surgical site infection.
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Norman G, Atkinson RA, Smith TA, Rowlands C, Rithalia AD, Crosbie EJ, and Dumville JC
- Subjects
- Abscess epidemiology, Anti-Bacterial Agents administration & dosage, Anti-Infective Agents, Local administration & dosage, Drug Combinations, Humans, Hypochlorous Acid administration & dosage, Incidence, Povidone-Iodine administration & dosage, Randomized Controlled Trials as Topic, Sodium Hypochlorite administration & dosage, Surgical Wound Dehiscence epidemiology, Surgical Wound Infection epidemiology, Therapeutic Irrigation methods, Surgical Wound Infection prevention & control
- Abstract
Background: Surgical site infections (SSIs) are wound infections that occur after an operative procedure. A preventable complication, they are costly and associated with poorer patient outcomes, increased mortality, morbidity and reoperation rates. Surgical wound irrigation is an intraoperative technique, which may reduce the rate of SSIs through removal of dead or damaged tissue, metabolic waste, and wound exudate. Irrigation can be undertaken prior to wound closure or postoperatively. Intracavity lavage is a similar technique used in operations that expose a bodily cavity; such as procedures on the abdominal cavity and during joint replacement surgery., Objectives: To assess the effects of wound irrigation and intracavity lavage on the prevention of surgical site infection (SSI)., Search Methods: In February 2017 we searched the Cochrane Wounds Specialised Register; the Cochrane Central Register of Controlled Trials (CENTRAL); Ovid MEDLINE; Ovid Embase and EBSCO CINAHL Plus. We also searched three clinical trials registries and references of included studies and relevant systematic reviews. There were no restrictions on language, date of publication or study setting., Selection Criteria: We included all randomised controlled trials (RCTs) of participants undergoing surgical procedures in which the use of a particular type of intraoperative washout (irrigation or lavage) was the only systematic difference between groups, and in which wounds underwent primary closure. The primary outcomes were SSI and wound dehiscence. Secondary outcomes were mortality, use of systemic antibiotics, antibiotic resistance, adverse events, re-intervention, length of hospital stay, and readmissions., Data Collection and Analysis: Two review authors independently assessed studies for inclusion at each stage. Two review authors also undertook data extraction, assessment of risk of bias and GRADE assessment. We calculated risk ratios or differences in means with 95% confidence intervals where possible., Main Results: We included 59 RCTs with 14,738 participants. Studies assessed comparisons between irrigation and no irrigation, between antibacterial and non-antibacterial irrigation, between different antibiotics, different antiseptics or different non-antibacterial agents, or between different methods of irrigation delivery. No studies compared antiseptic with antibiotic irrigation. Surgical site infectionIrrigation compared with no irrigation (20 studies; 7192 participants): there is no clear difference in risk of SSI between irrigation and no irrigation (RR 0.87, 95% CI 0.68 to 1.11; I
2 = 28%; 14 studies, 6106 participants). This would represent an absolute difference of 13 fewer SSIs per 1000 people treated with irrigation compared with no irrigation; the 95% CI spanned from 31 fewer to 10 more SSIs. This was low-certainty evidence downgraded for risk of bias and imprecision.Antibacterial irrigation compared with non-antibacterial irrigation (36 studies, 6163 participants): there may be a lower incidence of SSI in participants treated with antibacterial irrigation compared with non-antibacterial irrigation (RR 0.57, 95% CI 0.44 to 0.75; I2 = 53%; 30 studies, 5141 participants). This would represent an absolute difference of 60 fewer SSIs per 1000 people treated with antibacterial irrigation than with non-antibacterial (95% CI 35 fewer to 78 fewer). This was low-certainty evidence downgraded for risk of bias and suspected publication bias.Comparison of irrigation of two agents of the same class (10 studies; 2118 participants): there may be a higher incidence of SSI in participants treated with povidone iodine compared with superoxidised water (Dermacyn) (RR 2.80, 95% CI 1.05 to 7.47; low-certainty evidence from one study, 190 participants). This would represent an absolute difference of 95 more SSIs per 1000 people treated with povidone iodine than with superoxidised water (95% CI 3 more to 341 more). All other comparisons found low- or very low-certainty evidence of no clear difference between groups.Comparison of two irrigation techniques: two studies compared standard (non-pulsed) methods with pulsatile methods. There may, on average, be fewer SSIs in participants treated with pulsatile methods compared with standard methods (RR 0.34, 95% CI 0.19 to 0.62; I2 = 0%; two studies, 484 participants). This would represent an absolute difference of 109 fewer SSIs occurring per 1000 with pulsatile irrigation compared with standard (95% CI 62 fewer to 134 fewer). This was low-certainty evidence downgraded twice for risks of bias across multiple domains. Wound dehiscenceFew studies reported wound dehiscence. No comparison had evidence for a difference between intervention groups. This included comparisons between irrigation and no irrigation (one study, low-certainty evidence); antibacterial and non-antibacterial irrigation (three studies, very low-certainty evidence) and pulsatile and standard irrigation (one study, low-certainty evidence). Secondary outcomesFew studies reported outcomes such as use of systemic antibiotics and antibiotic resistance and they were poorly and incompletely reported. There was limited reporting of mortality; this may have been partially due to failure to specify zero events in participants at low risk of death. Adverse event reporting was variable and often limited to individual event types. The evidence for the impact of interventions on length of hospital stay was low or moderate certainty; where differences were seen they were too small to be clinically important., Authors' Conclusions: The evidence base for intracavity lavage and wound irrigation is generally of low certainty. Therefore where we identified a possible difference in the incidence of SSI (in comparisons of antibacterial and non-antibacterial interventions, and pulsatile versus standard methods) these should be considered in the context of uncertainty, particularly given the possibility of publication bias for the comparison of antibacterial and non-antibacterial interventions. Clinicians should also consider whether the evidence is relevant to the surgical populations under consideration, the varying reporting of other prophylactic antibiotics, and concerns about antibiotic resistance.We did not identify any trials that compared an antibiotic with an antiseptic. This gap in the direct evidence base may merit further investigation, potentially using network meta-analysis; to inform the direction of new primary research. Any new trial should be adequately powered to detect a difference in SSIs in eligible participants, should use robust research methodology to reduce the risks of bias and internationally recognised criteria for diagnosis of SSI, and should have adequate duration and follow-up.- Published
- 2017
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43. Speech and communication in Parkinson's disease: a cross-sectional exploratory study in the UK.
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Barnish MS, Horton SMC, Butterfint ZR, Clark AB, Atkinson RA, and Deane KHO
- Subjects
- Aged, Cognition, Cross-Sectional Studies, England, Female, Humans, Language, Language Therapy, Linear Models, Male, Middle Aged, Psychiatric Status Rating Scales, Speech Intelligibility, Speech Therapy, Surveys and Questionnaires, Parkinson Disease complications, Parkinson Disease psychology, Speech Disorders etiology, Speech Disorders psychology
- Abstract
Objective: To assess associations between cognitive status, intelligibility, acoustics and functional communication in PD., Design: Cross-sectional exploratory study of functional communication, including a within-participants experimental design for listener assessment., Setting: A major academic medical centre in the East of England, UK., Participants: Questionnaire data were assessed for 45 people with Parkinson's disease (PD), who had self-reported speech or communication difficulties and did not have clinical dementia. Acoustic and listener analyses were conducted on read and conversational speech for 20 people with PD and 20 familiar conversation partner controls without speech, language or cognitive difficulties., Main Outcome Measures: Functional communication assessed by the Communicative Participation Item Bank (CPIB) and Communicative Effectiveness Survey (CES)., Results: People with PD had lower intelligibility than controls for both the read (mean difference 13.7%, p=0.009) and conversational (mean difference 16.2%, p=0.04) sentences. Intensity and pause were statistically significant predictors of intelligibility in read sentences. Listeners were less accurate identifying the intended emotion in the speech of people with PD (14.8% point difference across conditions, p=0.02) and this was associated with worse speaker cognitive status (16.7% point difference, p=0.04). Cognitive status was a significant predictor of functional communication using CPIB (F=8.99, p=0.005, η
2 = 0.15) but not CES. Intelligibility in conversation sentences was a statistically significant predictor of CPIB (F=4.96, p=0.04, η2 = 0.19) and CES (F=13.65, p=0.002, η2 = 0.43). Read sentence intelligibility was not a significant predictor of either outcome., Conclusions: Cognitive status was an important predictor of functional communication-the role of intelligibility was modest and limited to conversational and not read speech. Our results highlight the importance of focusing on functional communication as well as physical speech impairment in speech and language therapy (SLT) for PD. Our results could inform future trials of SLT techniques for PD., Competing Interests: Competing interests: None declared., (© Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.)- Published
- 2017
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44. Notochordal and nucleus pulposus marker expression is maintained by sub-populations of adult human nucleus pulposus cells through aging and degeneration.
- Author
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Richardson SM, Ludwinski FE, Gnanalingham KK, Atkinson RA, Freemont AJ, and Hoyland JA
- Subjects
- Adolescent, Adult, Humans, Intervertebral Disc metabolism, Intervertebral Disc pathology, Middle Aged, Young Adult, Aging metabolism, Biomarkers metabolism, Intervertebral Disc Degeneration metabolism, Intervertebral Disc Degeneration pathology, Notochord metabolism, Nucleus Pulposus metabolism
- Abstract
The nucleus pulposus (NP) of the intervertebral disc (IVD) demonstrates substantial changes in cell and matrix composition with both ageing and degeneration. While recent transcriptomic profiling studies have helped define human NP cell phenotype, it remains unclear how expression of these markers is influenced by ageing or degeneration. Furthermore, cells of the NP are thought to derive from the notochord, although adult NP lacks identifiable notochordal (NC) cells. This study aimed to confirm expression of previously identified NP and NC marker genes in adult human NP cells from a range of ages and degenerate states. Importantly, using gene expression analysis (N = 60) and immunohistochemistry (N = 56) the study demonstrates expression of NP markers FoxF1, Pax-1, keratin-8/18, carbonic anhydrase-12, and NC markers brachyury, galectin-3 and CD24 in cells of the NP irrespective of age or degeneration. Our immunohistochemical data, combined with flow cytometry (N = 5) which identified a small number of CA12
+ Gal3+ T+ CD24+ cells, suggests the possible presence of a sub-population of cells with an NC-like phenotype in adult NP tissue. These findings suggest that the NP contains a heterogeneous population of cells, which may possess varied phenotypic and functional profiles and thus warrant further investigation to improve our understanding of IVD homeostasis and repair.- Published
- 2017
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45. Management and cost of surgical site infection in patients undergoing surgery for spinal metastasis.
- Author
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Atkinson RA, Jones A, Ousey K, and Stephenson J
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Female, Humans, Length of Stay, Male, Middle Aged, Young Adult, Health Care Costs, Spinal Neoplasms secondary, Spinal Neoplasms surgery, Surgical Wound Infection drug therapy, Surgical Wound Infection economics
- Abstract
Background: Surgical site infection (SSI) is a serious potential complication of spinal surgery. SSI may impact significantly on inpatient hospitalization and the costs associated with extra care., Aim: To investigate the management of patients experiencing SSI following surgery for spinal metastatic tumours, and to estimate the costs associated with SSI in this context., Methods: Patients experiencing SSI following spinal tumour surgery at a large spinal surgery centre between January 2009 and December 2012 were identified. Existing case notes were reviewed and patient and procedural data, details of the infection, and treatment interventions were recorded. A bottom-up approach to calculating costs associated with infection was used for patients experiencing SSI and compared with a quasi-random sample of similar patients without SSI., Findings: The mean cost of treating patients with SSI was significantly greater than costs associated with those without SSI (P=0.019). Mean cost of inpatient hospital stay was 60% higher in patients with SSI compared to those without SSI (P=0.004). Inpatient hospital stay alone accounted for 59% of total costs. Return to theatre was the second most costly intervention overall, accounting for 38% of costs, and was the most expensive single intervention involved in the treatment of SSI., Conclusion: SSI significantly increases healthcare costs for patients undergoing surgery for spinal metastasis, with prolonged inpatient hospitalization and return to theatre for wound management being major contributors. The actual total cost to society derived from SSI in this patient group is likely to be far beyond just the direct costs to healthcare providers., (Copyright © 2016 The Healthcare Infection Society. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2017
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46. Flutriciclamide (18F-GE180) PET: First-in-Human PET Study of Novel Third-Generation In Vivo Marker of Human Translocator Protein.
- Author
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Fan Z, Calsolaro V, Atkinson RA, Femminella GD, Waldman A, Buckley C, Trigg W, Brooks DJ, Hinz R, and Edison P
- Subjects
- Aged, Aged, 80 and over, Biomarkers metabolism, Carbazoles blood, Female, Humans, Male, Middle Aged, Organ Specificity, Pilot Projects, Radiopharmaceuticals blood, Radiopharmaceuticals pharmacokinetics, Reference Values, Reproducibility of Results, Sensitivity and Specificity, Tissue Distribution, Brain diagnostic imaging, Brain metabolism, Carbazoles pharmacokinetics, Molecular Imaging methods, Positron-Emission Tomography methods, Receptors, GABA metabolism
- Abstract
Neuroinflammation is associated with neurodegenerative disease. PET radioligands targeting the 18-kDa translocator protein (TSPO) have been used as in vivo markers of neuroinflammation, but there is an urgent need for novel probes with improved signal-to-noise ratio. Flutriciclamide (
18 F-GE180) is a recently developed third-generation TSPO ligand. In this first study, we evaluated the optimum scan duration and kinetic modeling strategies for18 F-GE180 PET in (older) healthy controls., Methods: Ten healthy controls, 6 TSPO high-affinity binders, and 4 mixed-affinity binders were recruited. All subjects underwent detailed neuropsychologic tests, MRI, and a 210-min18 F-GE180 dynamic PET/CT scan using metabolite-corrected arterial plasma input function. We evaluated 5 different kinetic models: irreversible and reversible 2-tissue-compartment models, a reversible 1-tissue model, and 2 models with an extra irreversible vascular compartment. The minimal scan duration was established using 210-min scan data. The feasibility of generating parametric maps was also investigated using graphical analysis., Results:18 F-GE180 concentration was higher in plasma than in whole blood during the entire scan duration. The volume of distribution (VT ) was 0.17 in high-affinity binders and 0.12 in mixed-affinity binders using the kinetic model. The model that best represented brain18 F-GE180 kinetics across regions was the reversible 2-tissue-compartment model (2TCM4k), and 90 min resulted as the optimum scan length required to obtain stable estimates. Logan graphical analysis with arterial input function gave a VT highly consistent with VT in the kinetic model, which could be used for voxelwise analysis., Conclusion: We report for the first time, to our knowledge, the kinetic properties of the novel third-generation TSPO PET ligand18 F-GE180 in humans: 2TCM4k is the optimal method to quantify the brain uptake, 90 min is the optimal scan length, and the Logan approach could be used to generate parametric maps. Although these control subjects have shown relatively low VT , the methodology presented here forms the basis for quantification for future PET studies using18 F-GE180 in different pathologies., (© 2016 by the Society of Nuclear Medicine and Molecular Imaging, Inc.)- Published
- 2016
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47. An assessment of key risk factors for surgical site infection in patients undergoing surgery for spinal metastases.
- Author
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Atkinson RA, Stephenson J, Jones A, and Ousey KJ
- Subjects
- Humans, Incidence, Retrospective Studies, Risk Factors, Spinal Neoplasms secondary, Postoperative Complications epidemiology, Spinal Neoplasms surgery, Surgical Wound Infection epidemiology
- Abstract
Objective: This study aimed to determine the rate of surgical site infection (SSI) in patients undergoing surgery for spinal metastases, and identify key risk factors for SSI among this patient group., Method: A retrospective case note review was undertaken in adult patients being treated at a single specialist centre for spinal surgery., Results: There were 152 patients identified for inclusion. Overall SSI rate was 11.2 per 100 patients (9.7 per 100 procedures). An increase in the risk of SSI was observed when surgery involved a greater number of vertebral levels (odds ratio 1.26, p=0.019) when controlling for primary spinal region. Controlling for the number of spinal levels, the odds of SSI increased by a factor of 5.6 (p=0.103) when the primary surgical region was thoracic, as opposed to cervical or lumbar., Conclusion: In conclusion, surgery associated with multiple vertebral levels for treatment of spinal metastases, particularly of the thoracic spine, is associated with increased risk of SSI.
- Published
- 2016
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48. Survival of patients undergoing surgery for metastatic spinal tumours and the impact of surgical site infection.
- Author
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Atkinson RA, Davies B, Jones A, van Popta D, Ousey K, and Stephenson J
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Survival Analysis, Tertiary Care Centers, United Kingdom epidemiology, Young Adult, Spinal Neoplasms secondary, Spinal Neoplasms surgery, Surgical Wound Infection epidemiology, Surgical Wound Infection mortality
- Abstract
Background: Patients with metastatic spinal tumours have a limited prognosis. Surgical complications that may result in prolonged hospitalization or readmission are highly undesirable. Surgical site infection (SSI) is one such complication, which can, in extreme cases, lead to death., Aim: To assess the impact of SSI on patient survival after surgery for spinal metastases., Methods: Demographic, operative, and survival data were collected on 152 patients undergoing surgery for spinal metastasis at a large UK tertiary referral centre. American Society of Anesthesiologists (ASA) grade and the Revised Tokuhashi Score (RTS) were determined as measures of health status and prognosis, respectively, at baseline. A semi-parametric Cox proportional hazards survival analysis was used to assess the relationships between covariates and survival., Findings: Seventeen patients (11.2%) experienced SSI. Overall, median survival time from operation was 262 days (95% confidence interval: 190-334 days) and 12-month survival was 42.1%. RTS (hazard ratio: 0.82; 95% confidence interval: 0.76-0.89; P < 0.001) and ASA grade (1.37; 1.03-1.82; P=0.028) were significantly associated with survival, with better survival found in patients with higher RTS and lower ASA scores. Infection status was of substantive importance, with better survival in those without SSI (P=0.075)., Conclusion: Twelve-month survival in patients undergoing surgery for spinal metastasis is ∼42%. RTS and ASA scores may be used as indicators of patient survival either in combination or individually. Whereas SSI has some negative impact on survival, a larger study sample would be needed to confirm whether this is statistically significant., (Copyright © 2016 The Healthcare Infection Society. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2016
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49. Proteomic and metabolomic changes driven by elevating myocardial creatine suggest novel metabolic feedback mechanisms.
- Author
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Zervou S, Yin X, Nabeebaccus AA, O'Brien BA, Cross RL, McAndrew DJ, Atkinson RA, Eykyn TR, Mayr M, Neubauer S, and Lygate CA
- Subjects
- Animals, Male, Membrane Transport Proteins biosynthesis, Membrane Transport Proteins genetics, Metabolomics, Mice, Mice, Transgenic, Muscle Proteins genetics, Myocardial Reperfusion Injury genetics, Myocardial Reperfusion Injury physiopathology, Myocardium, Proteomics, Rabbits, Creatine metabolism, Energy Metabolism, Gene Expression Regulation, Muscle Proteins biosynthesis, Myocardial Contraction, Myocardial Reperfusion Injury metabolism
- Abstract
Mice over-expressing the creatine transporter have elevated myocardial creatine levels [Cr] and are protected against ischaemia/reperfusion injury via improved energy reserve. However, mice with very high [Cr] develop cardiac hypertrophy and dysfunction. To investigate these contrasting effects, we applied a non-biased hypothesis-generating approach to quantify global protein and metabolite changes in the LV of mice stratified for [Cr] levels: wildtype, moderately elevated, and high [Cr] (65-85; 100-135; 160-250 nmol/mg protein, respectively). Male mice received an echocardiogram at 7 weeks of age with tissue harvested at 8 weeks. RV was used for [Cr] quantification by HPLC to select LV tissue for subsequent analysis. Two-dimensional difference in-gel electrophoresis identified differentially expressed proteins, which were manually picked and trypsin digested for nano-LC-MS/MS. Principal component analysis (PCA) showed efficient group separation (ANOVA P ≤ 0.05) and peptide sequences were identified by mouse database (UniProt 201203) using Mascot. A total of 27 unique proteins were found to be differentially expressed between normal and high [Cr], with proteins showing [Cr]-dependent differential expression, chosen for confirmation, e.g. α-crystallin B, a heat shock protein implicated in cardio-protection and myozenin-2, which could contribute to the hypertrophic phenotype. Nuclear magnetic resonance (¹H-NMR at 700 MHz) identified multiple strong correlations between [Cr] and key cardiac metabolites. For example, positive correlations with α-glucose (r² = 0.45; P = 0.002), acetyl-carnitine (r² = 0.50; P = 0.001), glutamine (r² = 0.59; P = 0.0002); and negative correlations with taurine (r² = 0.74; P < 0.0001), fumarate (r² = 0.45; P = 0.003), aspartate (r² = 0.59; P = 0.0002), alanine (r² = 0.66; P < 0.0001) and phosphocholine (r² = 0.60; P = 0.0002). These findings suggest wide-ranging and hitherto unexpected adaptations in substrate utilisation and energy metabolism with a general pattern of impaired energy generating pathways in mice with very high creatine levels.
- Published
- 2016
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50. Qualitative grading of disc degeneration by magnetic resonance in the lumbar and cervical spine: lack of correlation with histology in surgical cases.
- Author
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Davies BM, Atkinson RA, Ludwinski F, Freemont AJ, Hoyland JA, and Gnanalingham KK
- Subjects
- Adult, Aged, Aged, 80 and over, Diskectomy methods, Female, Humans, Intervertebral Disc Displacement diagnosis, Intervertebral Disc Displacement pathology, Lumbosacral Region pathology, Male, Middle Aged, Young Adult, Cervical Vertebrae pathology, Intervertebral Disc Degeneration diagnosis, Intervertebral Disc Degeneration pathology, Lumbar Vertebrae pathology, Magnetic Resonance Imaging methods
- Abstract
Background: Clinically, magnetic resonance (MR) imaging is the most effective non-invasive tool for assessing IVD degeneration. Histological examination of the IVD provides a more detailed assessment of the pathological changes at a tissue level. However, very few reports have studied the relationship between these techniques. Identifying a relationship may allow more detailed staging of IVD degeneration, of importance in targeting future regenerative therapies., Objectives: To investigate the relationship between MR and histological grading of IVD degeneration in the cervical and lumbar spine in patients undergoing discectomy., Methods: Lumbar (N = 99) and cervical (N = 106) IVD samples were obtained from adult patients undergoing discectomy surgery for symptomatic IVD herniation and graded to ascertain a histological grade of degeneration. The pre-operative MR images from these patients were graded for the degree of IVD (MR grade) and vertebral end-plate degeneration (Modic Changes, MC). The relationship between histological and MR grades of degeneration were studied., Results: In lumbar and cervical IVD the majority of samples (93%) exhibited moderate levels of degeneration (ie MR grades 3-4) on pre-operative MR scans. Histologically, most specimens displayed moderate to severe grades of degeneration in lumbar (99%) and cervical spine (93%). MR grade was weakly correlated with patient age in lumbar and cervical study groups. MR and histological grades of IVD degeneration did not correlate in lumbar or cervical study groups. MC were more common in the lumbar than cervical spine (e.g. 39 versus 20% grade 2 changes; p < 0.05), but failed to correlate with MR or histological grades for degeneration., Conclusions: In this surgical series, the resected IVD tissue displayed moderate to severe degeneration, but there is no correlation between MR and histological grades using a qualitative classification system. There remains a need for a quantitative, non-invasive, pre-clinical measure of IVD degeneration that correlates with histological changes seen in the IVD.
- Published
- 2016
- Full Text
- View/download PDF
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