477 results on '"Aschrafi, A."'
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2. Cortical control of aggression: GABA signalling in the anterior cingulate cortex
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Jager, Amanda, Amiri, Houshang, Bielczyk, Natalia, van Heukelum, Sabrina, Heerschap, Arend, Aschrafi, Armaz, Poelmans, Geert, Buitelaar, Jan K., Kozicz, Tamas, and Glennon, Jeffrey C.
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- 2020
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3. Cognitive behavioural therapy with optional graded exercise therapy in patients with severe fatigue with myotonic dystrophy type 1: a multicentre, single-blind, randomised trial
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Kierkegaard, Marie, Okkersen, Kees, Jimenez-Moreno, Cecilia, Wenninger, Stephan, Daidj, Ferroudja, Glennon, Jeffrey, Cumming, Sarah, Littleford, Roberta, Monckton, Darren, Lochmüller, Hanns, Catt, Michael, Faber, Catharina, Hapca, Adrian, Donnan, Peter, Gorman, Gráinne, Bassez, Guillaume, Schoser, Benedikt, Knoop, Hans, Treweek, Shaun, van Engelen, Baziel, Maas, Daphne, Nikolaus, Stephanie, Cornelissen, Yvonne, van Nimwegen, Marlies, Klerks, Ellen, Bouman, Sacha, Heskamp, Linda, Heerschap, Arend, Rahmadi, Ridho, Groot, Perry, Heskes, Tom, Kapusta, Katarzyna, Abghari, Shaghayegh, Aschrafi, Armaz, Poelmans, Geert, Raaphorst, Joost, Trenell, Michael, van Laar, Sandra, Wood, Libby, Cassidy, Sophie, Newman, Jane, Charman, Sarah, Steffaneti, Renae, Taylor, Louise, Brownrigg, Allan, Day, Sharon, Atalaya, Antonio, Hogarth, Fiona, Schüller, Angela, Stahl, Kristina, Künzel, Heike, Wolf, Martin, Jelinek, Anna, Lignier, Baptiste, Couppey, Florence, Delmas, Stéphanie, Deux, Jean-François, Hankiewicz, Karolina, Dogan, Celine, Minier, Lisa, Chevalier, Pascale, Hamadouche, Amira, Adam, Berit, Hannah, Michael, McKenzie, Emma, Rauchhaus, Petra, Van Hees, Vincent, Catt, Sharon, Schwalber, Ameli, Merkies, Ingemar, Dittrich, Juliane, Monckton, Darren G, Faber, Catharina G, Donnan, Peter T, and van Engelen, Baziel G M
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- 2018
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4. Cold Stress-Induced Protein Rbm3 Binds 60S Ribosomal Subunits, Alters MicroRNA Levels, and Enhances Global Protein Synthesis
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Dresios, John, Aschrafi, Armaz, Owens, Geoffrey C., Vanderklish, Peter W., Edelman, Gerald M., and Mauro, Vincent P.
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- 2005
5. The Fragile X Mental Retardation Protein and Group I Metabotropic Glutamate Receptors Regulate Levels of mRNA Granules in Brain
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Aschrafi, Armaz, Cunningham, Bruce A., Edelman, Gerald M., and Vanderklish, Peter W.
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- 2005
6. Altered expression of circadian rhythm and extracellular matrix genes in the medial prefrontal cortex of a valproic acid rat model of autism
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Olde Loohuis, Nikkie F.M., Martens, Gerard J.M., van Bokhoven, Hans, Kaplan, Barry B., Homberg, Judith R., and Aschrafi, Armaz
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- 2017
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7. The schizophrenia risk gene MIR137 acts as a hippocampal gene network node orchestrating the expression of genes relevant to nervous system development and function
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Olde Loohuis, Nikkie F.M., Nadif Kasri, Nael, Glennon, Jeffrey C., van Bokhoven, Hans, Hébert, Sébastien S., Kaplan, Barry B., Martens, Gerard J.M., and Aschrafi, Armaz
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- 2017
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8. Surface-Localized Glycine Transporters 1 and 2 Function as Monomeric Proteins in Xenopus Oocytes
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Horiuchi, Masahisa, Nicke, Annette, Gomeza, Jesus, Aschrafi, Armaz, Schmalzing, Günther, and Betz, Heinrich
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- 2001
9. Numerical Investigations on Track-substructure System Considering the Effect of Different Train Speeds
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Moormann, Christian, Lehn, Julian, Aschrafi, Johannes, and Sarkar, Debdeep
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- 2016
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10. Numerical Investigations on the Load Distribution over the Geogrid of a Basal Reinforced Piled Embankment under Cyclic Loading
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Lehn, Julian, Moormann, Christian, and Aschrafi, Johannes
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- 2016
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11. Enhanced protein production by microRNA-30 family in CHO cells is mediated by the modulation of the ubiquitin pathway
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Fischer, Simon, Mathias, Sven, Schaz, Simone, Emmerling, Verena Vanessa, Buck, Theresa, Kleemann, Michael, Hackl, Matthias, Grillari, Johannes, Aschrafi, Armaz, Handrick, René, and Otte, Kerstin
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- 2015
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12. MicroRNA-338 Attenuates Cortical Neuronal Outgrowth by Modulating the Expression of Axon Guidance Genes
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Kos, Aron, Klein-Gunnewiek, Teun, Meinhardt, Julia, Loohuis, Nikkie F. M. Olde, van Bokhoven, Hans, Kaplan, Barry B., Martens, Gerard J., Kolk, Sharon M., and Aschrafi, Armaz
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- 2017
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13. Elevated microRNA-181c and microRNA-30d levels in the enlarged amygdala of the valproic acid rat model of autism
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N.F.M. Olde Loohuis, K. Kole, J.C. Glennon, P. Karel, G. Van der Borg, Y. Van Gemert, D. Van den Bosch, J. Meinhardt, A. Kos, F. Shahabipour, P. Tiesinga, H. van Bokhoven, G.J.M. Martens, B.B. Kaplan, J.R. Homberg, and A. Aschrafi
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Autism spectrum disorder ,Valproic acid ,Amygdala ,MicroRNA ,Gene networks ,Neurodevelopmental disorder ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Autism spectrum disorders are severe neurodevelopmental disorders, marked by impairments in reciprocal social interaction, delays in early language and communication, and the presence of restrictive, repetitive and stereotyped behaviors. Accumulating evidence suggests that dysfunction of the amygdala may be partially responsible for the impairment of social behavior that is a hallmark feature of ASD. Our studies suggest that a valproic acid (VPA) rat model of ASD exhibits an enlargement of the amygdala as compared to controls rats, similar to that observed in adolescent ASD individuals. Since recent research suggests that altered neuronal development and morphology, as seen in ASD, may result from a common post-transcriptional process that is under tight regulation by microRNAs (miRs), we examined genome-wide transcriptomics expression in the amygdala of rats prenatally exposed to VPA, and detected elevated miR-181c and miR-30d expression levels as well as dysregulated expression of their cognate mRNA targets encoding proteins involved in neuronal system development. Furthermore, selective suppression of miR-181c function attenuates neurite outgrowth and branching, and results in reduced synaptic density in primary amygdalar neurons in vitro. Collectively, these results implicate the small non-coding miR-181c in neuronal morphology, and provide a framework of understanding how dysregulation of a neurodevelopmentally relevant miR in the amygdala may contribute to the pathophysiology of ASD.
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- 2015
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14. MicroRNA-137 Controls AMPA-Receptor-Mediated Transmission and mGluR-Dependent LTD
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Nikkie F.M. Olde Loohuis, Wei Ba, Peter H. Stoerchel, Aron Kos, Amanda Jager, Gerhard Schratt, Gerard J.M. Martens, Hans van Bokhoven, Nael Nadif Kasri, and Armaz Aschrafi
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Biology (General) ,QH301-705.5 - Abstract
Mutations affecting the levels of microRNA miR-137 are associated with intellectual disability and schizophrenia. However, the pathophysiological role of miR-137 remains poorly understood. Here, we describe a highly conserved miR-137-binding site within the mRNA encoding the GluA1 subunit of AMPA-type glutamate receptors (AMPARs) and confirm that GluA1 is a direct target of miR-137. Postsynaptic downregulation of miR-137 at the CA3-CA1 hippocampal synapse selectively enhances AMPAR-mediated synaptic transmission and converts silent synapses to active synapses. Conversely, miR-137 overexpression selectively reduces AMPAR-mediated synaptic transmission and silences active synapses. In addition, we find that miR-137 is transiently upregulated in response to metabotropic glutamate receptor 5 (mGluR5), but not mGluR1 activation. Consequently, acute interference with miR-137 function impedes mGluR-LTD expression. Our findings suggest that miR-137 is a key factor in the control of synaptic efficacy and mGluR-dependent synaptic plasticity, supporting the notion that glutamatergic dysfunction contributes to the pathogenesis of miR-137-linked cognitive impairments.
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- 2015
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15. Intellektuelles Exil: Zur Gründungsgeschichte der Zeitschrift Babylon
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Zarin Aschrafi
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- 2022
16. Axonal Protein Synthesis and the Regulation of Local Mitochondrial Function
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Kaplan, Barry B., Gioio, Anthony E., Hillefors, Mi, Aschrafi, Armaz, and Koenig, Edward, editor
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- 2009
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17. Differential microRNA expression in cultured palatal fibroblasts from infants with cleft palate and controls
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Schoen, Christian, Glennon, Jeffrey C, Abghari, Shaghayegh, Bloemen, Marjon, Aschrafi, Armaz, Carels, Carine E L, and Von den Hoff, Johannes W
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- 2018
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18. MicroRNA-326 acts as a molecular switch in the regulation of midbrain urocortin 1 expression
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Aschrafi, Armaz, Verheijen, Jan M., Gordebeke, Peter M., Loohuis, Nikkie F. Olde, Menting, Kelly, Jager, Amanda, Palkovits, Miklos, Geenen, Bram, Kos, Aron, Martens, Gerard J.M., Glennon, Jeffrey C., Kaplan, Barry B., Gaszner, Balazs, and Kozicz, Tamas
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MicroRNA -- Health aspects ,Neuropeptides -- Health aspects -- Genetic aspects ,Suicidal behavior -- Genetic aspects ,Health ,Psychology and mental health - Abstract
Background: Altered levels of urocortin 1 (Ucn1) in the centrally projecting Edinger-Westphal nucleus (EWcp) of depressed suicide attempters or completers mediate the brain's response to stress, while the mechanism regulating Ucn1 expression is unknown. We tested the hypothesis that microRNAs (miRNAs), which are vital fine-tuners of gene expression during the brain's response to stress, have the capacity to modulate Ucn1 expression. Methods: Computational analysis revealed that the Ucn1 3' untranslated region contained a conserved binding site for miR-326. We examined miR-326 and Ucn1 levels in the EWcp of depressed suicide completers. In addition, we evaluated miR-326 and Ucn1 levels in the serum and the EWcp of a chronic variable mild stress (CVMS) rat model of behavioural despair and after recovery from CVMS, respectively. Gain and loss of miR-326 function experiments examined the regulation of Ucn1 by this miRNA in cultured midbrain neurons. Results: We found reduced miR-326 levels concomitant with elevated Ucn1 levels in the EWcp of depressed suicide completers as well as in the EWcp of CVMS rats. In CVMS rats fully recovered from stress, both serum and EWcp miR-326 levels rebounded to nonstressed levels. While downregulation of miR-326 levels in primary midbrain neurons enhanced Ucn1 expression levels, miR-326 overexpression selectively reduced the levels of this neuropeptide. Limitations: This study lacked experiments showing that in vivo alteration of miR-326 levels alleviate depression-like behaviours. We show only correlative data for miR-325 and cocaine- and amphetamine-regulated transcript levels in the EWcp. Conclusion: We identified miR-326 dysregulation in depressed suicide completers and characterized this miRNA as an upstream regulator of the Ucn1 neuropeptide expression in midbrain neurons., Introduction Suicide ranks among the leading causes of death globally and takes a heavy emotional and public health toll on most societies. (1,2) The current understanding of suicidal behaviour is [...]
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- 2016
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19. An integrated molecular landscape implicates the regulation of dendritic spine formation through insulin-related signalling in obsessive-compulsive disorder
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van de Vondervoort, Ilse, Poelmans, Geert, Aschrafi, Armaz, Pauls, David L., Buitelaar, Jan K., Glennon, Jeffrey C., and Franke, Barbara
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Obsessive-compulsive disorder -- Physiological aspects ,Insulin -- Health aspects ,Dendritic cells -- Health aspects ,Cellular signal transduction -- Observations ,Health ,Psychology and mental health - Abstract
Background: Obsessive-compulsive disorder (OCD) is a neuropsychiatric disorder with onset in childhood and is characterized by obsessions (recurrent, intrusive, persistent thoughts, impulses and/or ideas that often cause anxiety or distress) and compulsions (ritualized and stereotypic behaviours or mental acts that are often performed to relieve anxiety or distress associated with obsessions). Although OCD is a heritable disorder, its complex molecular etiology is poorly understood. Methods: We combined enrichment analyses and an elaborate literature review of the top-ranked genes emerging from the 2 published genome-wide association studies of OCD and candidate genes implicated through other evidence in order to identify biological processes that, when dysregulated, increase the risk for OCD. Results: The resulting molecular protein landscape was enriched for proteins involved in regulating postsynaptic dendritic spine formation-- and hence synaptic plasticity--through insulin-dependent molecular signalling cascades. Limitations: This study is a first attempt to integrate molecuar information from different sources in order to identify biological mechanisms underlying OCD etiology. Our findings are constrained by the limited information from hypothesis-free studies and the incompleteness and existing limitations of the OCD literature and the gene function annotations of gene enrichment tools. As this study was solely based on in silico analyses, experimental validation of the provided hypotheses is warranted. Conclusion: Our work suggests a key role for insulin and insulin-related signalling in OCD etiology and--if confirmed by independent studies--could eventually pave the way for the development of novel OCD treatments., Introduction Obsessive-compulsive disorder (OCD) is a neuropsychiatric disorder that affects an estimated 2.5% of the world's population (1,2) and is characterized by obsessive and/or compulsive behaviours. (3) Obsessive behaviours include [...]
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- 2016
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20. Impact of Building Database Accuracy on Predictions with Wave Propagation Models in Urban Scenarios.
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Alexander Aschrafi, Philipp Wertz, Michael Layh, Friedrich M. Landstorfer, Gerd Wölfle, and René Wahl
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- 2006
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21. Breaking limitations of complex culture media: Functional non-viral miRNA delivery into pharmaceutical production cell lines
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Fischer, Simon, Wagner, Andreas, Kos, Aron, Aschrafi, Armaz, Handrick, René, Hannemann, Juergen, and Otte, Kerstin
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- 2013
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22. Axonal localization and mitochondrial association of precursor microRNA 338
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Vargas, Jose Norberto S., Kar, Amar N., Kowalak, Jeffrey A., Gale, Jenna R., Aschrafi, Armaz, Chen, Cai-Yun, Gioio, Anthony E., and Kaplan, Barry B.
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- 2016
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23. MicroRNA-181 promotes synaptogenesis and attenuates axonal outgrowth in cortical neurons
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Kos, Aron, Olde Loohuis, Nikkie, Meinhardt, Julia, van Bokhoven, Hans, Kaplan, Barry B., Martens, Gerard J, and Aschrafi, Armaz
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- 2016
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24. Antimicrobial and Cytotoxic Properties of Extracts from Plants Traditionally Used in North-East Brazil
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Luisa Zupin, Alessandro Tossi, Ricardo Salas Roldan Filho, Cláudia Sampaio de Andrade Lima, Airin Aschrafi, Ana Maria Benko-Iseppon, Lidiane Lindinalva Barbosa Amorim, Lívia Maria Batista Vilela, Sergio Crovella, Carlos André dos Santos Silva, Vincenzo Petix, and Lucas Matos de Lima
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010404 medicinal & biomolecular chemistry ,0303 health sciences ,03 medical and health sciences ,Traditional medicine ,Cytotoxic T cell ,North east ,Biology ,Antimicrobial ,01 natural sciences ,030304 developmental biology ,0104 chemical sciences - Abstract
The north-eastern region of Brazil is home to communities of diverse ethnic origins that still depend significantly on folk medicine, with emphasis on plant extracts. The present work aims at investigating medicinal plants used in the traditional medicine of north-eastern Brazil with an assessment of the antimicrobial profile of their extracts. The antimicrobial activity of 12 extracts from 11 plant species from eight higher plant families traditionally used was evaluated against three human pathogens (Staphylococcus aureus, Escherichia coli, Streptococcus pneumoniae) using the Agar Disk Diffusion and Broth Microdilution assays. The cytotoxic effects were evaluated on human keratinocytes. A hydroalcoholic extract from Anadenanthera colubrina presented the most promising in vitro antimicrobial activity against S.aureus associated with low cytotoxicity towards human keratinocytes. The information gathered in the present study represents a starting point for further research aiming at providing scientific evidence to the empirical usage of medicinal plants in traditional practices.
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- 2021
25. Connecting Synaptic Activity with Plasticity-Related Gene Expression: From Molecular Mechanisms to Neurological Disorders
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Pablo Muñoz, Armaz Aschrafi, and Pablo R. Moya
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2016
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26. MicroRNA-137 regulates a glucocorticoid receptor-dependent signalling network: implications for the etiology of schizophrenia
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Valles, Astrid, Martens, Gerard J.M., De Weerd, Peter, Poelmans, Geert, and Aschrafi, Armaz
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Corticosteroids -- Health aspects ,RNA sequencing -- Research ,Genetic research ,Schizophrenia -- Genetic aspects ,MicroRNA -- Health aspects ,Neurological research ,Health ,Psychology and mental health - Abstract
Background: Schizophrenia is a highly heritable neurodevelopmental disorder. A genetic variant of microRNA-137 (miR137) has yielded significant genome-wide association with schizophrenia, suggesting that this miRNA plays a key role in its etiology. Therefore, a molecular network of interacting miR-137 targets may provide insights into the biological processes underlying schizophrenia. Methods: We first used bioinformatics tools to obtain and analyze predicted human and mouse miR-137 targets. We then determined miR-137 levels in rat barrel cortex after environmental enrichment (EE), a neuronal plasticity model that induces upregulation of several predicted miR-137 targets. Subsequently, expression changes of these predicted targets were examined through loss of miR-137 function experiments in rat cortical neurons. Finally, we conducted bioinformatics and literature analyses to examine the targets that were upregulated upon miR-137 downregulation. Results: Predicted human and mouse miR-137 targets were enriched in neuronal processes, such as axon guidance, neuritogenesis and neurotransmission. The miR-137 levels were significantly downregulated after EE, and we identified 5 novel miR-137 targets through loss of miR-137 function experiments. These targets fit into a glucocorticoid receptor-dependent signalling network that also includes 3 known miR-137 targets with genome-wide significant association with schizophrenia. Limitations: The bioinformatics analyses involved predicted human and mouse miR137 targets owing to lack of information on predicted rat miR-137 targets, whereas follow-up experiments were performed with rats. Furthermore, indirect effects in the loss of miR-137 function experiments cannot be excluded. Conclusion: We have identified a miR-137-regulated protein network that contributes to our understanding of the molecular basis of schizophrenia and provides clues for future research into psychopharmacological treatments for schizophrenia., Introduction Schizophrenia is a serious psychiatric condition with a lifetime prevalence of approximately 1%. (1) Although its etiology is still largely unknown, schizophrenia is thought to result from a complex [...]
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- 2014
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27. Angiotensin II mediates the axonal trafficking of tyrosine hydroxylase and dopamine β‐hydroxylase mRNAs and enhances norepinephrine synthesis in primary sympathetic neurons
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Jeffrey A. Kowalak, Barry B. Kaplan, Adama Berndt, Jenna R. Gale, Anthony E. Gioio, and Armaz Aschrafi
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0301 basic medicine ,Tyrosine 3-Monooxygenase ,Dopamine beta-Hydroxylase ,Superior Cervical Ganglion ,Axonal Transport ,Biochemistry ,Article ,Rats, Sprague-Dawley ,Norepinephrine ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Dopamine ,medicine ,Animals ,RNA, Messenger ,Axon ,Cells, Cultured ,Neurons ,Messenger RNA ,Tyrosine hydroxylase ,Chemistry ,Angiotensin II ,Axons ,Rats ,Cell biology ,Protein Transport ,030104 developmental biology ,medicine.anatomical_structure ,Catecholamine ,Axoplasmic transport ,Adrenergic Fibers ,030217 neurology & neurosurgery ,medicine.drug - Abstract
In the sympatho-adrenal system, angiotensin II (Ang II) acts as a key neuromodulatory component. At sympathetic nerve terminals, Ang II influences sympathetic transmission by enhancing norepinephrine (NE) synthesis, facilitating NE release and inhibiting NE uptake. Previously, it was demonstrated that tyrosine hydroxylase (TH) mRNA is trafficked to the distal axons of primary superior cervical ganglia (SCG) neurons, directed by a cis-acting regulatory element (i.e. zipcode) located in the 3’UTR of the transcript. Results of metabolic labeling studies established that the mRNA is locally translated. It was further shown that the axonal trafficking of the mRNA encoding the enzyme plays an important role in mediating dopamine (DA) and NE synthesis and may facilitate the maintenance of axonal catecholamine levels. In the present study, the hypothesis was tested that Ang II induces NE synthesis in rat primary SCG neurons via the modulation of the trafficking of the mRNAs encoding the catecholamine synthesizing enzymes TH and Dopamine β-Hydroxylase (DBH). Treatment of SCG neurons with the Ang II receptor type 1 (AT1R) agonist, L-162,313, increases the axonal levels of TH and DBH mRNA and protein and results in elevated NE levels. Conversely, treatment of rat SCG neurons with the AT1R antagonist, Eprosartan, abolished the L-162,313-mediated increase in axonal levels of TH and DBH mRNA and protein. In a first attempt to identify the proteins involved in the Ang II-mediated axonal transport of TH mRNA, we used a biotinylated 50-nucleotide TH RNA zipcode as bait in the affinity purification of TH zipcode-associated proteins. Mass spectrometric analysis of the TH zipcode ribonucleoprotein (RNP) complex immune-purified from SCG neurons led to the identification of 163 somal and 127 axonal proteins functionally involved in binding nucleic acids, the translational machinery or acting as subunits of cytoskeletal and motor proteins. Surprisingly, immune-purification of the TH axonal trafficking complex, results in the acquisition of DBH mRNA, suggesting that these mRNAs maybe transported to the axon together, possibly in the same RNP complex. Taken together, our results point to a novel mechanism by which Ang II participates in the regulation of axonal synthesis of NE by modulating the local trafficking and expression of TH and DBH, two key enzymes involved in the catecholamine biosynthetic pathway.
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- 2019
28. MSH3 modifies somatic instability and disease severity in Huntington’s and myotonic dystrophy type 1
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Flower, Michael, Lomeilkaite, Vilila, Ciosi, Marc, Cumming, Sarah, Morales, Fernando, Lo, Kitty, Hensman Moss, Davina, Jones, Lesley, Holmans, Peter, Monckton, Darren G., Tabrizi, Sarah J., Kraus, Peter, Hoffman, Rainer, Tobin, Alan, Borowsky, Beth, Keenan, S., Whitlock, Kathryn B., Queller, Sarah, Campbell, Colin, Wang, Chiachi, Langbehn, Doug, Axelson, Eric, Johnson, Hans, Acharya, Tanka, Cash, Dave M., Frost, Chris, Jones, Rebecca, Jurgens, Caroline, ‘t Hart, Ellen P., van der Grond, Jeroen, Witjes- Ane, Marie-Noelle N., Roos, Raymund A. C., Dumas, Eve M., van den Bogaard, Simon J. A., Stopford, Cheryl, Craufurd, David, Callaghan, Jenny, Arran, Natalie, Rosas, Diana D., Lee, S., Monaco, W., O’Regan, Alison, Milchman, Cassie, Frajman, E., Labuschagne, Izelle, Stout, Julie, Campbell, Melissa, Andrews, Sophie C., Bechtel, Natalie, Reilmann, Ralf, Bohlen, Stefan, Kennard, Chris, Berna, Claire, Hicks, Stephen, Durr, Alexandra, Pourchot, C., Bardinet, Eric, Nigaud, Kevin, Valabre`gue, Romain, Lehericy, Stephane, Marelli, Cecilia, Jauffret, Celine, Justo, Damian, Leavitt, Blair, Decolongon, Joji, Sturrock, Aaron, Coleman, Alison, Dar Santos, Rachelle, Patel, A., Gibbard, Claire, Whitehead, Daisy, Wild, Ed, Owen, Gail, Crawford, Helen, Malone, Ian, Lahiri, Nayana, Fox, Nick C., Hobbs, Nicola Z., Scahill, Rachael I., Ordidge, Roger, Pepple, Tracey, Read, Joy, Say, Miranda J., Landwehrmeyer, Bernhard, Daidj, Ferroudja, Bassez, Guillaume, Lignier, Baptiste, Couppey, Florence, Delmas, Stéphanie, Deux, Jean-François, Hankiewicz, Karolina, Dogan, Celine, Minier, Lisa, Chevalier, Pascale, Hamadouche, Amira, Catt, Michael, van Hees, Vincent, Catt, Sharon, Schwalber, Ameli, Dittrich, Juliane, Kierkegaard, Marie, Wenninger, Stephan, Schoser, Benedikt, Schüller, Angela, Stahl, Kristina, Künzel, Heike, Wolff, Martin, Jellinek, Anna, Moreno, Cecilia Jimenez, Gorman, Grainne, Lochmüller, Hanns, Trenell, Michael, van Laar, Sandra, Wood, Libby, Cassidy, Sophie, Newman, Jane, Charman, Sarah, Steffaneti, Renae, Taylor, Louise, Brownrigg, Allan, Day, Sharon, Atalaia, Antonio, Raaphorst, Joost, Okkersen, Kees, Engelen, Baziel van, Nikolaus, Stephanie, Cornelissen, Yvonne, van Nimwegen, Marlies, Maas, Daphne, Klerks, Ellen, Bouman, Sacha, Knoop, Hans, Heskamp, Linda, Heerschap, Arend, Rahmadi, Ridho, Groot, Perry, Heskes, Tom, Kapusta, Katarzyna, Glennon, Jeffrey, Abghari, Shaghayegh, Aschrafi, Armaz, Poelmans, Geert, Treweek, Shaun, Hogarth, Fiona, Littleford, Roberta, Donnan, Peter, Hapca, Adrian, Hannah, Michael, McKenzie, Emma, Rauchhaus, Petra, Cumming, Sarah A., Adam, Berit, Faber, Catharina, Merkies, Ingemar, TRACK-HD Investigators, OPTIMISTIC Consortium, Neurology, ANS - Neurodegeneration, APH - Mental Health, and Medical Psychology
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0301 basic medicine ,congenital, hereditary, and neonatal diseases and abnormalities ,Single-nucleotide polymorphism ,Biology ,association study ,Myotonic dystrophy ,transcriptomics ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Huntington's disease ,mental disorders ,medicine ,Allele ,Genetics ,myotonic dystrophy ,medicine.disease ,nervous system diseases ,Minor allele frequency ,030104 developmental biology ,MSH3 ,movement disorders ,Neurology (clinical) ,Trinucleotide repeat expansion ,030217 neurology & neurosurgery ,Reports ,Huntington’s disease - Abstract
A genome-wide association study recently identified an MSH3/DHFR locus associated with Huntington’s disease progression. Flower, Lomeikaite et al. identify tandem repeat variants at this locus, and show that a three-repeat allele is associated with reduced somatic expansion, delayed onset and slower progression in Huntington’s disease and myotonic dystrophy type 1., The mismatch repair gene MSH3 has been implicated as a genetic modifier of the CAG·CTG repeat expansion disorders Huntington’s disease and myotonic dystrophy type 1. A recent Huntington’s disease genome-wide association study found rs557874766, an imputed single nucleotide polymorphism located within a polymorphic 9 bp tandem repeat in MSH3/DHFR, as the variant most significantly associated with progression in Huntington’s disease. Using Illumina sequencing in Huntington’s disease and myotonic dystrophy type 1 subjects, we show that rs557874766 is an alignment artefact, the minor allele for which corresponds to a three-repeat allele in MSH3 exon 1 that is associated with a reduced rate of somatic CAG·CTG expansion (P = 0.004) and delayed disease onset (P = 0.003) in both Huntington’s disease and myotonic dystrophy type 1, and slower progression (P = 3.86 × 10−7) in Huntington’s disease. RNA-Seq of whole blood in the Huntington’s disease subjects found that repeat variants are associated with MSH3 and DHFR expression. A transcriptome-wide association study in the Huntington’s disease cohort found increased MSH3 and DHFR expression are associated with disease progression. These results suggest that variation in the MSH3 exon 1 repeat region influences somatic expansion and disease phenotype in Huntington’s disease and myotonic dystrophy type 1, and suggests a common DNA repair mechanism operates in both repeat expansion diseases.
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- 2019
29. Recent Developments in Optical Neuromodulation Technologies
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Kos, Aron, Loohuis, Nikkie F. Olde, Glennon, Jeffrey C., Celikel, Tansu, Martens, Gerard J. M., Tiesinga, Paul H., and Aschrafi, Armaz
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- 2013
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30. Passive load estimation on single piles and pile groups from visco-plastic mud-flow
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Aschrafi, J, primary, Moormann, C, additional, and Stolle, D, additional
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- 2014
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31. MicroRNA-338 regulates the axonal expression of multiple nuclear-encoded mitochondrial mRNAs encoding subunits of the oxidative phosphorylation machinery
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Aschrafi, Armaz, Kar, Amar N., Natera-Naranjo, Orlangie, MacGibeny, Margaret A., Gioio, Anthony E., and Kaplan, Barry B.
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- 2012
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32. Der Nahe Osten im Frankfurter Westend: Politische Akteure im Deutungskonflikt (1967-1972)
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Aschrafi, Zarin and Aschrafi, Zarin
- Abstract
1967 rückte der Palästinakonflikt in den Fokus der politischen Arbeit des Sozialistischen Deutschen Studentenbundes (SDS), der diesen Konflikt im Zusammenhang mit den Befreiungsbewegungen der sogenannten Dritten Welt deutete. Politischen Zuspruch erhielt der SDS von palästinensischen wie auch israelischen Studentengruppen, die in Frankfurt am Main ihr Wirkungszentrum hatten. Diese sich als antizionistisch verstehenden Akteure fanden in dem ebenfalls in Frankfurt sitzenden Bundesverband Jüdischer Studenten in Deutschland (BJSD) einen Kontrahenten. Die Präsenz dieser zentralen Protagonisten transformierte das studentische Milieu im Frankfurter Westend zum bundesrepublikanischen Nukleus eines Deutungskampfes um die Geschehnisse im Nahen Osten. Eine sabotierte Veranstaltung mit dem israelischen Botschafter Asher Ben-Natan im Frankfurter Hörsaal VI am 9. Juni 1969 dient dem Aufsatz als Beispiel, um diesen Konflikt zu historisieren. Neben schriftlichen Quellen stützt sich der Beitrag auf Bildmaterial des Frankfurter Fotografen Kurt Weiner., In 1967, the Palestine conflict became a focal topic for the Socialist German Student Union (SDS), which interpreted the conflict within the frame of liberation movements of the so-called Third World. The SDS received political support from Palestinian and Israeli student groups that had also established centres of activities in Frankfurt. These groups, which considered themselves anti-Zionist, faced opposition from the Frankfurt-based Federal Association of Jewish Students in Germany (BJSD). This specific mixture of political actors transformed the student milieu in Frankfurt’s Westend district into a West German nucleus of the conflict of interpretation about the events in the Middle East. For this article, a sabotaged discussion with Israeli Ambassador Asher Ben-Natan at the University of Frankfurt’s Lecture Hall No. VI on 9 June 1969 serves as an exemplary case for historicising this conflict. In addition to written sources, the article draws on photographic material by the Frankfurt photojournalist Kurt Weiner.
- Published
- 2021
33. Roles of individual N-glycans for ATP potency and expression of the rat P2X1 receptor
- Author
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Rettinger, Jürgen, Aschrafi, Armaz, Schmalzing, Günther, Rettinger, Jürgen, Aschrafi, Armaz, and Schmalzing, Günther
- Abstract
P2X1 receptor subunits assemble in the ER of Xenopus oocytes to homotrimers that appear as ATP-gated cation channels at the cell surface. Here we address the extent to which N-glycosylation contributes to assembly, surface appearance, and ligand recognition of P2X1receptors. SDS-polyacrylamide gel electrophoresis (PAGE) analysis of glycan minus mutants carrying Gln instead of Asn at five individual NXT/S sequons reveals that Asn284 remains unused because of a proline in the +4 position. The four other sites (Asn153, Asn184, Asn210, and Asn300) carryN-glycans, but solely Asn300 located only eight residues upstream of the predicted reentry loop of P2X1acquires complex-type carbohydrates. Like parent P2X1, glycan minus mutants migrate as homotrimers when resolved by blue native PAGE. Recording of ATP-gated currents reveals that elimination of Asn153 or Asn210 diminishes or increases functional expression levels, respectively. In addition, elimination of Asn210 causes a 3-fold reduction of the potency for ATP. If three or all four N-glycosylation sites are simultaneously eliminated, formation of P2X1 receptors is severely impaired or abolished, respectively. We conclude that at least oneN-glycan per subunit of either position is absolutely required for the formation of P2X1 receptors and that individual N-glycans possess marked positional effects on expression levels (Asn154, Asn210) and ATP potency (Asn210).
- Published
- 2021
34. MicroRNA networks direct neuronal development and plasticity
- Author
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Olde Loohuis, N. F. M., Kos, A., Martens, G. J. M., Van Bokhoven, H., Nadif Kasri, N., and Aschrafi, A.
- Published
- 2012
- Full Text
- View/download PDF
35. Cortical control of aggression: GABA signalling in the anterior cingulate cortex
- Author
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Armaz Aschrafi, Tamas Kozicz, Natalia Z. Bielczyk, Arend Heerschap, Amanda Jager, Geert Poelmans, Jan K. Buitelaar, Houshang Amiri, Jeffrey C. Glennon, and Sabrina van Heukelum
- Subjects
0301 basic medicine ,Male ,Synaptogenesis ,Social Interaction ,Stress-related disorders Donders Center for Medical Neuroscience [Radboudumc 13] ,Poison control ,Biology ,Inhibitory postsynaptic potential ,Gyrus Cinguli ,03 medical and health sciences ,Mice ,0302 clinical medicine ,All institutes and research themes of the Radboud University Medical Center ,Species Specificity ,Urological cancers Radboud Institute for Molecular Life Sciences [Radboudumc 15] ,medicine ,Animals ,Pharmacology (medical) ,Pathological ,Biological Psychiatry ,Anterior cingulate cortex ,gamma-Aminobutyric Acid ,Pharmacology ,Mice, Inbred BALB C ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Aggression ,Microarray analysis techniques ,Molecular Animal Physiology ,Receptors, GABA-A ,Mice, Inbred C57BL ,Psychiatry and Mental health ,030104 developmental biology ,medicine.anatomical_structure ,Neurology ,Excitatory postsynaptic potential ,Neurology (clinical) ,medicine.symptom ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Reduced top-down control by cortical areas is assumed to underlie pathological forms of aggression. While the precise underlying molecular mechanisms are still elusive, it seems that balancing the excitatory and inhibitory tones of cortical brain areas has a role in aggression control. The molecular mechanisms underpinning aggression control were examined in the BALB/cJ mouse model. First, these mice were extensively phenotyped for aggression and anxiety in comparison to BALB/cByJ controls. Microarray data was then used to construct a molecular landscape, based on the mRNAs that were differentially expressed in the brains of BALB/cJ mice. Subsequently, we provided corroborating evidence for the key findings from the landscape through 1H-magnetic resonance imaging and quantitative polymerase chain reactions, specifically in the anterior cingulate cortex (ACC). The molecular landscape predicted that altered GABA signalling may underlie the observed increased aggression and anxiety in BALB/cJ mice. This was supported by a 40% reduction of 1H-MRS GABA levels and a 20-fold increase of the GABA-degrading enzyme Abat in the ventral ACC. As a possible compensation, Kcc2, a potassium-chloride channel involved in GABA-A receptor signalling, was found increased. Moreover, we observed aggressive behaviour that could be linked to altered expression of neuroligin-2, a membrane-bound cell adhesion protein that mediates synaptogenesis of mainly inhibitory synapses. In conclusion, Abat and Kcc2 seem to be involved in modulating aggressive and anxious behaviours observed in BALB/cJ mice through affecting GABA signalling in the ACC.
- Published
- 2020
36. Der Nahe Osten im Frankfurter Westend. Politische Akteure im Deutungskonflikt (1967–1972)
- Author
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Aschrafi, Zarin
- Subjects
palästinensisch-israelischer Konflikt ,allgemeine Geschichte ,History ,Studentenbewegung ,General History ,Geschichte ,Middle East conflict ,Palestinian-Israeli conflict ,Protest ,Nahost-Konflikt ,student movement ,SDS ,ddc:900 - Abstract
1967 rückte der Palästinakonflikt in den Fokus der politischen Arbeit des Sozialistischen Deutschen Studentenbundes (SDS), der diesen Konflikt im Zusammenhang mit den Befreiungsbewegungen der sogenannten Dritten Welt deutete. Politischen Zuspruch erhielt der SDS von palästinensischen wie auch israelischen Studentengruppen, die in Frankfurt am Main ihr Wirkungszentrum hatten. Diese sich als antizionistisch verstehenden Akteure fanden in dem ebenfalls in Frankfurt sitzenden Bundesverband Jüdischer Studenten in Deutschland (BJSD) einen Kontrahenten. Die Präsenz dieser zentralen Protagonisten transformierte das studentische Milieu im Frankfurter Westend zum bundesrepublikanischen Nukleus eines Deutungskampfes um die Geschehnisse im Nahen Osten. Eine sabotierte Veranstaltung mit dem israelischen Botschafter Asher Ben-Natan im Frankfurter Hörsaal VI am 9. Juni 1969 dient dem Aufsatz als Beispiel, um diesen Konflikt zu historisieren. Neben schriftlichen Quellen stützt sich der Beitrag auf Bildmaterial des Frankfurter Fotografen Kurt Weiner., In 1967, the Palestine conflict became a focal topic for the Socialist German Student Union (SDS), which interpreted the conflict within the frame of liberation movements of the so-called Third World. The SDS received political support from Palestinian and Israeli student groups that had also established centres of activities in Frankfurt. These groups, which considered themselves anti-Zionist, faced opposition from the Frankfurt-based Federal Association of Jewish Students in Germany (BJSD). This specific mixture of political actors transformed the student milieu in Frankfurt’s Westend district into a West German nucleus of the conflict of interpretation about the events in the Middle East. For this article, a sabotaged discussion with Israeli Ambassador Asher Ben-Natan at the University of Frankfurt’s Lecture Hall No. VI on 9 June 1969 serves as an exemplary case for historicising this conflict. In addition to written sources, the article draws on photographic material by the Frankfurt photojournalist Kurt Weiner.
- Published
- 2020
- Full Text
- View/download PDF
37. A potential regulatory role for intronic microRNA-338-3p for its host gene encoding apoptosis-associated tyrosine kinase.
- Author
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Aron Kos, Nikkie F M Olde Loohuis, Martha L Wieczorek, Jeffrey C Glennon, Gerard J M Martens, Sharon M Kolk, and Armaz Aschrafi
- Subjects
Medicine ,Science - Abstract
MicroRNAs (miRNAs) are important gene regulators that are abundantly expressed in both the developing and adult mammalian brain. These non-coding gene transcripts are involved in post-transcriptional regulatory processes by binding to specific target mRNAs. Approximately one third of known miRNA genes are located within intronic regions of protein coding and non-coding regions, and previous studies have suggested a role for intronic miRNAs as negative feedback regulators of their host genes. In the present study, we monitored the dynamic gene expression changes of the intronic miR-338-3p and miR-338-5p and their host gene Apoptosis-associated Tyrosine Kinase (AATK) during the maturation of rat hippocampal neurons. This revealed an uncorrelated expression pattern of mature miR-338 strands with their host gene. Sequence analysis of the 3' untranslated region (UTR) of rat AATK mRNA revealed the presence of two putative binding sites for miR-338-3p. Thus, miR-338-3p may have the capacity to modulate AATK mRNA levels in neurons. Transfection of miR-338-3p mimics into rat B35 neuroblastoma cells resulted in a significant decrease of AATK mRNA levels, while the transfection of synthetic miR-338-5p mimics did not alter AATK levels. Our results point to a possible molecular mechanism by which miR-338-3p participates in the regulation of its host gene by modulating the levels of AATK mRNA, a kinase which plays a role during differentiation, apoptosis and possibly in neuronal degeneration.
- Published
- 2012
- Full Text
- View/download PDF
38. Cortical control of aggression: GABA signalling in the anterior cingulate cortex
- Author
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Jager, A., Amiri, H., Bielczyk, N.Z., Heukelum, S. van, Heerschap, A., Aschrafi, A., Poelmans, G.J.V., Buitelaar, J.K., Kozicz, T., Glennon, J.C., Jager, A., Amiri, H., Bielczyk, N.Z., Heukelum, S. van, Heerschap, A., Aschrafi, A., Poelmans, G.J.V., Buitelaar, J.K., Kozicz, T., and Glennon, J.C.
- Abstract
Contains fulltext : 216077.pdf (postprint version ) (Open Access)
- Published
- 2020
39. Antimicrobial and Cytotoxic Properties of Extracts from Plants Traditionally Used in North-East Brazil
- Author
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Aschrafi, Airin, primary, Zupin, Luisa, additional, Vilela, Lívia Maria Batista, additional, Silva, Carlos André dos Santos, additional, Filho, Ricardo Salas Roldan, additional, de Lima, Lucas Matos, additional, Lima, Cláudia Sampaio de Andrade, additional, Petix, Vincenzo, additional, Tossi, Alessandro, additional, Amorim, Lidiane Lindinalva Barbosa, additional, Benko-Iseppon, Ana Maria, additional, and Crovella, Sergio, additional
- Published
- 2021
- Full Text
- View/download PDF
40. Local translation of ATP synthase subunit 9 mRNA alters ATP levels and the production of ROS in the axon
- Author
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Natera-Naranjo, Orlangie, Kar, Amar N., Aschrafi, Armaz, Gervasi, Noreen M., Macgibeny, Margaret A., Gioio, Anthony E., and Kaplan, Barry B.
- Published
- 2012
- Full Text
- View/download PDF
41. Chromosome 1p21.3 microdeletions comprising DPYD and MIR137 are associated with intellectual disability
- Author
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Willemsen, Marjolein H, Vallès, Astrid, Kirkels, Laurens A M H, Mastebroek, Mathilde, Olde Loohuis, Nikkie, Kos, Aron, Wissink-Lindhout, Willemijn M, de Brouwer, Arjan P M, Nillesen, Willy M, Pfundt, Rolph, Holder-Espinasse, Muriel, Vallée, Louis, Andrieux, Joris, Coppens-Hofman, Marjolein C, Rensen, Hanneke, Hamel, Ben C J, van Bokhoven, Hans, Aschrafi, Armaz, and Kleefstra, Tjitske
- Published
- 2011
- Full Text
- View/download PDF
42. Regulation of axonal trafficking of cytochrome c oxidase IV mRNA
- Author
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Aschrafi, Armaz, Natera-Naranjo, Orlangie, Gioio, Anthony E., and Kaplan, Barry B.
- Published
- 2010
- Full Text
- View/download PDF
43. Nuclear-Encoded Mitochondrial mRNAs: A Powerful Force in Axonal Growth and Development
- Author
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Armaz Aschrafi, Jenna R. Gale, Barry B. Kaplan, and Anthony E. Gioio
- Subjects
0301 basic medicine ,RNA, Mitochondrial ,Mitochondrion ,Biology ,03 medical and health sciences ,Translational regulation ,medicine ,Protein biosynthesis ,Animals ,Humans ,ATP5G1 ,RNA, Messenger ,Growth cone ,Cell Nucleus ,General Neuroscience ,Translation (biology) ,Axons ,Cell biology ,Heterogeneous population ,Cell nucleus ,030104 developmental biology ,medicine.anatomical_structure ,nervous system ,Neurodevelopmental Disorders ,Protein Biosynthesis ,Neurology (clinical) - Abstract
Axons, their growth cones, and synaptic nerve terminals are neuronal subcompartments that have high energetic needs. As such, they are enriched in mitochondria, which supply the ATP necessary to meet these demands. To date, a heterogeneous population of nuclear-encoded mitochondrial mRNAs has been identified in distal axons and growth cones. Accumulating evidence suggests that the local translation of these mRNAs is required for mitochondrial maintenance and axonal viability. Here, we review evidence that suggests a critical role for axonal translation of nuclear-encoded mitochondrial mRNAs in axonal growth and development. Additionally, we explore the role that site-specific translation at the mitochondria itself may play in this process. Finally, we briefly review the clinical implications of dysregulation of local translation of mitochondrial-related mRNAs in neurodevelopmental disorders.
- Published
- 2017
44. Differential microRNA expression in cultured palatal fibroblasts from infants with cleft palate and controls
- Author
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Marjon Bloemen, Christian Schoen, Johannes W. Von den Hoff, Jeffrey C. Glennon, Armaz Aschrafi, Carine Carels, and Shaghayegh Abghari
- Subjects
Male ,Palate, Hard ,0301 basic medicine ,Small RNA ,Orthodontics ,Biology ,Real-Time Polymerase Chain Reaction ,Andrology ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,microRNA ,Biopsy ,medicine ,Humans ,Cells, Cultured ,Regulation of gene expression ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,medicine.diagnostic_test ,Gene Expression Profiling ,Infant ,Articles ,Anatomy ,Fibroblasts ,Fold change ,Cleft Palate ,body regions ,Gene expression profiling ,MicroRNAs ,Reconstructive and regenerative medicine Radboud Institute for Molecular Life Sciences [Radboudumc 10] ,030104 developmental biology ,Real-time polymerase chain reaction ,Gene Expression Regulation ,Case-Control Studies ,Child, Preschool ,embryonic structures ,biology.protein ,Female ,Dicer - Abstract
Background The role of microRNAs (miRNAs) in animal models of palatogenesis has been shown, but only limited research has been carried out in humans. To date, no miRNA expression study on tissues or cells from cleft palate patients has been published. We compared miRNA expression in palatal fibroblasts from cleft palate patients and age-matched controls. Material and methods Cultured palatal fibroblasts from 10 non-syndromic cleft lip and palate patients (nsCLP; mean age: 18 ± 2 months), 5 non-syndromic cleft palate only patients (nsCPO; mean age: 17 ± 2 months), and 10 controls (mean age: 24 ± 5 months) were analysed with next-generation small RNA sequencing. All subjects are from Western European descent. Sequence reads were bioinformatically processed and the differentially expressed miRNAs were technically validated using quantitative reverse-transcription polymerase chain reaction (RT-qPCR). Results Using RNA sequencing, three miRNAs (hsa-miR-93-5p, hsa-miR-18a-5p, and hsa-miR-92a-3p) were up-regulated and six (hsa-miR-29c-5p, hsa-miR-549a, hsa-miR-3182, hsa-miR-181a-5p, hsa-miR-451a, and hsa-miR-92b-5p) were down-regulated in nsCPO fibroblasts. One miRNA (hsa-miR-505-3p) was down-regulated in nsCLP fibroblasts. Of these, hsa-miR-505-3p, hsa-miR-92a, hsa-miR-181a, and hsa-miR-451a were also differentially expressed using RT-PCR with a higher fold change than in RNAseq. Limitations The small sample size may limit the value of the data. In addition, interpretation of the data is complicated by the fact that biopsy samples are taken after birth, while the origin of the cleft lies in the embryonic period. This, together with possible effects of the culture medium, implies that only cell-autonomous genetic and epigenetic differences might be detected. Conclusions For the first time, we have shown that several miRNAs appear to be dysregulated in palatal fibroblasts from patients with nsCLP and nsCPO. Furthermore, large-scale genomic and expression studies are needed to validate these findings.
- Published
- 2017
45. MicroRNAs in Palatogenesis and Cleft Palate
- Author
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Geert Poelmans, Michelle Thonissen, Carine Carels, Johannes W. Von den Hoff, Christian Schoen, and Armaz Aschrafi
- Subjects
0301 basic medicine ,DGCR8 ,Physiology ,Gene regulatory network ,Review ,030105 genetics & heredity ,03 medical and health sciences ,Physiology (medical) ,microRNA ,Gene expression ,genetics ,Post-transcriptional regulation ,Transcription factor ,Zebrafish ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,miRNA ,Genetics ,Regulation of gene expression ,cleft palate ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,biology ,biology.organism_classification ,palatogenesis ,030104 developmental biology ,Reconstructive and regenerative medicine Radboud Institute for Molecular Life Sciences [Radboudumc 10] ,biology.protein ,post-transcriptional regulation - Abstract
Palatogenesis requires a precise spatiotemporal regulation of gene expression, which is controlled by an intricate network of transcription factors and their corresponding DNA motifs. Even minor perturbations of this network may cause cleft palate, the most common congenital craniofacial defect in humans. MicroRNAs (miRNAs), a class of small regulatory non-coding RNAs, have elicited strong interest as key regulators of embryological development, and as etiological factors in disease. MiRNAs function as post-transcriptional repressors of gene expression and are therefore able to fine-tune gene regulatory networks. Several miRNAs are already identified to be involved in congenital diseases. Recent evidence from research in zebrafish and mice indicates that miRNAs are key factors in both normal palatogenesis and cleft palate formation. Here, we provide an overview of recently identified molecular mechanisms underlying palatogenesis involving specific miRNAs, and discuss how dysregulation of these miRNAs may result in cleft palate.
- Published
- 2017
46. MicroRNA-338 modulates cortical neuronal placement and polarity
- Author
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Aron Kos, Barry B. Kaplan, Armaz Aschrafi, Annetrude Johanne de Mooij-Malsen, Sharon M. Kolk, Hans van Bokhoven, and Gerard J.M. Martens
- Subjects
0301 basic medicine ,Brain development ,Polarity (physics) ,Biology ,Brief Communication ,03 medical and health sciences ,microRNA ,Cell polarity ,medicine ,Animals ,Rats, Wistar ,Molecular Biology ,Cell Shape ,Regulation of gene expression ,Cerebral Cortex ,Neurons ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Base Sequence ,Molecular Animal Physiology ,RNA ,Cell Polarity ,Cortical plate ,Cell Biology ,Anatomy ,Mice, Inbred C57BL ,MicroRNAs ,030104 developmental biology ,medicine.anatomical_structure ,Cerebral cortex ,Neuroscience - Abstract
The precise spatial and temporal regulation of gene expression orchestrates the many intricate processes during brain development. In the present study we examined the role of the brain-enriched microRNA-338 (miR-338) during mouse cortical development. Reduction of miR-338 levels in the developing mouse cortex, using a sequence-specific miR-sponge, resulted in a loss of neuronal polarity in the cortical plate and significantly reduced the number of neurons within this cortical layer. Conversely, miR-338 overexpression in developing mouse cortex increased the number of neurons, which exhibited a multipolar morphology. All together, our results raise the possibility for a direct role for this non-coding RNA, which was recently associated with schizophrenia, in the regulation of cortical neuronal polarity and layer placement.
- Published
- 2017
47. Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev–RRE complexes
- Author
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EDGCOMB, STEPHEN P., ASCHRAFI, ANGELIQUE, KOMPFNER, ELIZABETH, WILLIAMSON, JAMES R., GERACE, LARRY, and HENNIG, MIRKO
- Published
- 2008
48. Structural white matter networks in myotonic dystrophy type 1
- Author
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van Dorst, Maud, Okkersen, Kees, Kessels, Roy P. C., Meijer, Frederick J. A., Monckton, Darren G., van Engelen, Baziel G. M., Tuladhar, Anil M., Raaphorst, Joost, Nikolaus, Stephanie, Cornelissen, Yvonne, van Nimwegen, Marlies, Maas, Daphne, Klerks, Ellen, Bouman, Sacha, Knoop, Hans, Heskamp, Linda, Heerschap, Arend, Rahmadi, Ridho, Groot, Perry, Heskes, Tom, Kapusta, Katarzyna, Glennon, Jeffrey, Abghari, Shaghayegh, Aschrafi, Armaz, Poelmans, Geert, Lochmueller, Hanns, Gorman, Grainne, Moreno, Aura Cecilia Jimenez, Trenell, Michael, van Laar, Sandra, Wood, Libby, Cassidy, Sophie, Newman, Jane, Charman, Sarah, Steffaneti, Renae, Taylor, Louise, Brownrigg, Allan, Day, Sharon, Atalaia, Antonio, Schoser, Benedikt, Wenninger, Stephan, Schueller, Angela, Stahl, Kristina, Kuenzel, Heike, Wolf, Martin, Jelinek, Anna, Bassez, Guillaume, Daidj, Ferroudja, Faber, Catharina, Merkies, Ingemar, Neurology, Amsterdam Neuroscience - Neuroinfection & -inflammation, Klinische Neurowetenschappen, MUMC+: MA Med Staf Spec Neurologie (9), and RS: MHeNs - R1 - Cognitive Neuropsychiatry and Clinical Neuroscience
- Subjects
Male ,Alzheimer`s disease Donders Center for Medical Neuroscience [Radboudumc 1] ,CTG REPEATS ,Neuropsychological Tests ,Audiology ,lcsh:RC346-429 ,RICH-CLUB ,0302 clinical medicine ,QUALITY-OF-LIFE ,Neural Pathways ,Image Processing, Computer-Assisted ,Myotonic Dystrophy ,Medicine ,Purdue Pegboard Test ,Apathy ,Neuropsychological assessment ,SCALE ,PERSONALITY ,medicine.diagnostic_test ,Myotonic dystrophy type 1 ,ABNORMALITIES ,White matter ,05 social sciences ,Neuropsychology ,Brain ,EXPANSION ,Middle Aged ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Diffusion tensor imaging ,medicine.anatomical_structure ,Neurology ,lcsh:R858-859.7 ,Female ,medicine.symptom ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] ,MRI ,Tractography ,Adult ,medicine.medical_specialty ,Cognitive Neuroscience ,lcsh:Computer applications to medicine. Medical informatics ,Myotonic dystrophy ,Article ,050105 experimental psychology ,03 medical and health sciences ,Humans ,0501 psychology and cognitive sciences ,Radiology, Nuclear Medicine and imaging ,BRAIN CONNECTIVITY ,lcsh:Neurology. Diseases of the nervous system ,Neuro- en revalidatiepsychologie ,business.industry ,Neuropsychology and rehabilitation psychology ,SPATIAL STATISTICS ,COGNITIVE IMPAIRMENT ,medicine.disease ,Cross-Sectional Studies ,Neurology (clinical) ,Networks ,business ,030217 neurology & neurosurgery ,Diffusion MRI - Abstract
The myriad of neuropsychiatric manifestations reported in myotonic dystrophy type 1 may have its origin in alterations of complex brain network interactions at the structural level. In this study, we tested the hypothesis that altered white matter microstructural integrity and network organisation were present in a cohort of individuals with DM1 compared to unaffected controls, which was expected to be associated with CNS related disease manifestations of DM1. We performed a cross-sectional neuropsychological assessment and brain MRI in 25 myotonic dystrophy type 1 (DM1) patients and 26 age, sex and educational level matched unaffected controls. Patients were recruited from the Dutch cohort of the OPTIMISTIC study, a concluded trial which had included ambulant, genetically confirmed DM1 patients who were severely fatigued. We applied graph theoretical analysis on structural networks derived from diffusion tensor imaging (DTI) data and deterministic tractography to determine global and local network properties and performed group-wise comparisons. Furthermore, we analysed the following variables from structural MRI imaging: semi-quantitative white matter hyperintensity load andwhite matter tract integrity using tract-based spatial statistics (TBSS). Structural white matter networks in DM1 were characterised by reduced global efficiency, local efficiency and strength, while the network density was compatible to controls. Other findings included increased white matter hyperintensity load, and diffuse alterations of white matter microstructure in projection, association and commissural fibres. DTI and network measures were associated (partial correlations coefficients ranging from 0.46 to 0.55) with attention (d2 Test), motor skill (Purdue Pegboard test) and visual-constructional ability and memory (copy subtest of the Rey-Osterrieth Complex Figure Test). DTI and network measures were not associated with clinical measures of fatigue (checklist individual strength, fatigue subscale) or apathy (apathy evaluation scale – clinician version). In conclusion, our study supports the view of brain involvement in DM1 as a complex network disorder, characterised by white matter network alterations that may have relevant neuropsychological correlations. This work was supported by the European Community's Seventh Framework Programme (FP7/2007–2013; grant agreement n° 305,697) and the Marigold Foundation., Highlights • Structural white matter networks in DM1 display diffuse alterations in connectivity in comparison with unaffected controls • Networks are characterised by decreased strenght, local and global efficiency, at a comparable density • In this study, network parameters were slightly associated with measures of neuropsychological performance
- Published
- 2019
49. Two isoforms of the cold-inducible mRNA-binding protein RBM3 localize to dendrites and promote translation
- Author
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Smart, Fiona, Aschrafi, Armaz, Atkins, Annette, Owens, Geoffrey C., Pilotte, Julie, Cunningham, Bruce A., and Vanderklish, Peter W.
- Published
- 2007
50. MSH3 modifies somatic instability and disease severity in Huntington's and myotonic dystrophy type 1
- Author
-
Flower, M, Lomeikaite, V, Ciosi, M, Cumming, S, Morales, F, Lo, K, Moss, DH, Jones, L, Holmans, P, Monckton, DG, Tabrizi, SJ, Kraus, P, Hoffman, R, Tobin, A, Borowsky, B, Keenan, S, Whitlock, KB, Quelle, S, Campbell, C, Wang, C, Langbehn, D, Axelson, E, Johnson, H, Acharya, T, Cash, DM, Frost, C, Jones, R, Jurgen, C, t Hart, EP, van Der Grond, J, Witjes-Ane, M-NN, Roos, RAC, Dumas, EM, van den Bogaard, SJA, Stopford, C, Craufurd, D, Callaghan, J, Arran, N, Rosas, DD, Lee, S, Monaco, W, ORegan, A, Milchman, C, Frajman, E, Labuschagne, I, Stout, J, Campbell, M, Andrews, SC, Bechtel, N, Reilmann, R, Bohlen, S, Kennard, C, Berna, C, Hicks, S, Durr, A, Pourchot, C, Bardinet, E, Nigaud, K, Valabregue, R, Lehericy, S, Marelli, C, Jauffret, C, Justo, D, Leavitt, B, Decolongon, J, Sturrock, A, Coleman, A, Santos, RD, Patel, A, Gibbard, C, Whitehead, D, Wild, E, Owen, G, Crawford, H, Malone, I, Lahiri, N, Fox, NC, Hobbs, NZ, Scahill, R, Ordidge, R, Pepple, T, Read, J, Say, MJ, Landwehrmeyer, B, Daidj, FOA, Bassez, G, Lignier, B, Couppey, F, Delmas, S, Deux, J-F, Hankiewicz, K, Dogan, C, Minier, L, Chevalier, P, Hamadouche, A, Catt, M, van Hees, V, Catt, S, Schwalber, A, Dittrich, J, Kierkegaard, M, Wenninger, S, Schoser, B, Schuller, A, Stahl, K, Kiinzel, H, Wolff, M, Jellinek, A, Moreno, CJ, Gorman, G, Lochmuller, H, Trenell, M, van Laar, S, Wood, L, Cassidy, S, Newman, J, Charman, S, Steffaneti, R, Taylor, L, Brownrigg, A, Day, S, Atalaia, A, Raaphorst, J, Okkersen, K, van Engelen, B, Nikolaus, S, Cornelissen, Y, van Nimwegen, M, Maas, D, Klerks, E, Bouman, S, Knoop, H, Heskamp, L, Heerschap, A, Rahmadi, R, Groot, P, Heskes, T, Kapusta, K, Glennon, J, Abghari, S, Aschrafi, A, Poelmans, G, Treweek, S, Hogarth, F, Littleford, R, Donnan, P, Hapca, A, Hannah, M, McKenzie, E, Rauchhaus, P, Cumming, SA, Adam, B, Faber, C, Merkies, I, Flower, M, Lomeikaite, V, Ciosi, M, Cumming, S, Morales, F, Lo, K, Moss, DH, Jones, L, Holmans, P, Monckton, DG, Tabrizi, SJ, Kraus, P, Hoffman, R, Tobin, A, Borowsky, B, Keenan, S, Whitlock, KB, Quelle, S, Campbell, C, Wang, C, Langbehn, D, Axelson, E, Johnson, H, Acharya, T, Cash, DM, Frost, C, Jones, R, Jurgen, C, t Hart, EP, van Der Grond, J, Witjes-Ane, M-NN, Roos, RAC, Dumas, EM, van den Bogaard, SJA, Stopford, C, Craufurd, D, Callaghan, J, Arran, N, Rosas, DD, Lee, S, Monaco, W, ORegan, A, Milchman, C, Frajman, E, Labuschagne, I, Stout, J, Campbell, M, Andrews, SC, Bechtel, N, Reilmann, R, Bohlen, S, Kennard, C, Berna, C, Hicks, S, Durr, A, Pourchot, C, Bardinet, E, Nigaud, K, Valabregue, R, Lehericy, S, Marelli, C, Jauffret, C, Justo, D, Leavitt, B, Decolongon, J, Sturrock, A, Coleman, A, Santos, RD, Patel, A, Gibbard, C, Whitehead, D, Wild, E, Owen, G, Crawford, H, Malone, I, Lahiri, N, Fox, NC, Hobbs, NZ, Scahill, R, Ordidge, R, Pepple, T, Read, J, Say, MJ, Landwehrmeyer, B, Daidj, FOA, Bassez, G, Lignier, B, Couppey, F, Delmas, S, Deux, J-F, Hankiewicz, K, Dogan, C, Minier, L, Chevalier, P, Hamadouche, A, Catt, M, van Hees, V, Catt, S, Schwalber, A, Dittrich, J, Kierkegaard, M, Wenninger, S, Schoser, B, Schuller, A, Stahl, K, Kiinzel, H, Wolff, M, Jellinek, A, Moreno, CJ, Gorman, G, Lochmuller, H, Trenell, M, van Laar, S, Wood, L, Cassidy, S, Newman, J, Charman, S, Steffaneti, R, Taylor, L, Brownrigg, A, Day, S, Atalaia, A, Raaphorst, J, Okkersen, K, van Engelen, B, Nikolaus, S, Cornelissen, Y, van Nimwegen, M, Maas, D, Klerks, E, Bouman, S, Knoop, H, Heskamp, L, Heerschap, A, Rahmadi, R, Groot, P, Heskes, T, Kapusta, K, Glennon, J, Abghari, S, Aschrafi, A, Poelmans, G, Treweek, S, Hogarth, F, Littleford, R, Donnan, P, Hapca, A, Hannah, M, McKenzie, E, Rauchhaus, P, Cumming, SA, Adam, B, Faber, C, and Merkies, I
- Abstract
The mismatch repair gene MSH3 has been implicated as a genetic modifier of the CAG·CTG repeat expansion disorders Huntington's disease and myotonic dystrophy type 1. A recent Huntington's disease genome-wide association study found rs557874766, an imputed single nucleotide polymorphism located within a polymorphic 9 bp tandem repeat in MSH3/DHFR, as the variant most significantly associated with progression in Huntington's disease. Using Illumina sequencing in Huntington's disease and myotonic dystrophy type 1 subjects, we show that rs557874766 is an alignment artefact, the minor allele for which corresponds to a three-repeat allele in MSH3 exon 1 that is associated with a reduced rate of somatic CAG·CTG expansion (P = 0.004) and delayed disease onset (P = 0.003) in both Huntington's disease and myotonic dystrophy type 1, and slower progression (P = 3.86 × 10-7) in Huntington's disease. RNA-Seq of whole blood in the Huntington's disease subjects found that repeat variants are associated with MSH3 and DHFR expression. A transcriptome-wide association study in the Huntington's disease cohort found increased MSH3 and DHFR expression are associated with disease progression. These results suggest that variation in the MSH3 exon 1 repeat region influences somatic expansion and disease phenotype in Huntington's disease and myotonic dystrophy type 1, and suggests a common DNA repair mechanism operates in both repeat expansion diseases.
- Published
- 2019
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