901 results on '"Ari, E"'
Search Results
2. Human Learning of Hierarchical Graphs
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Xia, Xiaohuan, Klishin, Andrei A., Stiso, Jennifer, Lynn, Christopher W., Kahn, Ari E., Caciagli, Lorenzo, and Bassett, Dani S.
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Quantitative Biology - Neurons and Cognition ,Condensed Matter - Statistical Mechanics ,Physics - Biological Physics ,Physics - Physics and Society - Abstract
Humans are constantly exposed to sequences of events in the environment. Those sequences frequently evince statistical regularities, such as the probabilities with which one event transitions to another. Collectively, inter-event transition probabilities can be modeled as a graph or network. Many real-world networks are organized hierarchically and understanding how humans learn these networks is an ongoing aim of current investigations. While much is known about how humans learn basic transition graph topology, whether and to what degree humans can learn hierarchical structures in such graphs remains unknown. We investigate how humans learn hierarchical graphs of the Sierpi\'nski family using computer simulations and behavioral laboratory experiments. We probe the mental estimates of transition probabilities via the surprisal effect: a phenomenon in which humans react more slowly to less expected transitions, such as those between communities or modules in the network. Using mean-field predictions and numerical simulations, we show that surprisal effects are stronger for finer-level than coarser-level hierarchical transitions. Surprisal effects at coarser levels of the hierarchy are difficult to detect for limited learning times or in small samples. Using a serial response experiment with human participants (n=$100$), we replicate our predictions by detecting a surprisal effect at the finer-level of the hierarchy but not at the coarser-level of the hierarchy. To further explain our findings, we evaluate the presence of a trade-off in learning, whereby humans who learned the finer-level of the hierarchy better tended to learn the coarser-level worse, and vice versa. Our study elucidates the processes by which humans learn hierarchical sequential events. Our work charts a road map for future investigation of the neural underpinnings and behavioral manifestations of graph learning., Comment: 22 pages, 10 figures, 1 table
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- 2023
3. Mercury in Neotropical birds: a synthesis and prospectus on 13 years of exposure data
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Sayers, II, Christopher J., Evers, David C., Ruiz-Gutierrez, Viviana, Adams, Evan, Vega, Claudia M., Pisconte, Jessica N., Tejeda, Vania, Regan, Kevin, Lane, Oksana P., Ash, Abidas A., Cal, Reynold, Reneau, Stevan, Martínez, Wilber, Welch, Gilroy, Hartwell, Kayla, Teul, Mario, Tzul, David, Arendt, Wayne J., Tórrez, Marvin A., Watsa, Mrinalini, Erkenswick, Gideon, Moore, Caroline E., Gerson, Jacqueline, Sánchez, Victor, Purizaca, Raúl Pérez, Yurek, Helen, Burton, Mark E. H., Shrum, Peggy L., Tabares-Segovia, Sebastian, Vargas, Korik, Fogarty, Finola F., Charette, Mathieu R., Martínez, Ari E., Bernhardt, Emily S., Taylor, Robert J., Tear, Timothy H., and Fernandez, Luis E.
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- 2023
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4. Alprazolam modulates persistence energy during emotion processing in first-degree relatives of individuals with schizophrenia: a network control study
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Mahadevan, Arun S., Cornblath, Eli J., Lydon-Staley, David M., Zhou, Dale, Parkes, Linden, Larsen, Bart, Adebimpe, Azeez, Kahn, Ari E., Gur, Ruben C., Gur, Raquel E., Satterthwaite, Theodore D., Wolf, Daniel H., and Bassett, Dani S.
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- 2023
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5. Measuring neuronal avalanches to inform brain-computer interfaces
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Corsi, Marie-Constance, Sorrentino, Pierpaolo, Schwartz, Denis, George, Nathalie, Gollo, Leonardo L., Chevallier, Sylvain, Hugueville, Laurent, Kahn, Ari E., Dupont, Sophie, Bassett, Danielle S., Jirsa, Viktor, and De Vico Fallani, Fabrizio
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- 2024
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6. A multitiered analysis platform for genome sequencing: Design and initial findings of the Australian Genomics Cardiovascular Disorders Flagship
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Ades, Lesley, Enriquez, Annabel, McLean, Alison, Smyth, Renee, Alankarage, Dimithu, Fatkin, Diane, McNamara, James, Soka, Magdalena, Morgan almog, Fear, Vanessa, Medi, Caroline, Stark, Zornitza, Al-Shinnag, Mohammad, Fine, Miriam, Metke, Alejandro, Sy, Raymond, Atherton, John J., Finlay, Keri, Milnes, Di, Tang, Dotti, Austin, Rachel, Garza, Denisse, Milward, Michael, Taylor, Jessica, Bagnall, Richard D., Giannoulatou, Eleni, Morrish, Ansley, Taylor, Shelby, Barnett, Chris, Gongolidis, Laura, Morwood, Jim, Tchan, Michel, Blue, Gillian M., Gray, Belinda, Mountain, Helen, Thompson, Tina, Bodek, Simon, Greer, Cassie, Mowat, David, Thorpe, Jordan, Boggs, Kirsten, Haan, Eric, Ng, Chai-Ann, Trainer, Alison, Bogwitz, Michael, Haas, Mathilda, Nowak, Natalie, Trivedi, Gunjan, Boughtwood, Tiffany, Hanna, Bernadette, Martinez, Noelia Nunez, Valente, Giulia, Bray, Alessandra, Harvey, Richard, Ohanian, Monique, van Spaendonck-Zwarts, Karin, Brion, Marie-Jo, Hayward, Janette, O’Sullivan, Sinead, Vandenberg, Jamie, Brown, Jaye, Herrera, Carmen, Overkov, Angela, Verma, Kunal, Richardson, Rob Bryson, Hill, Adam, Pachter, Nicholas, Vidgen, Miranda, Burnett, Leslie, Hollingsworth, Georgie, Patel, Chirag, Vohra, Jitendra, Burns, Charlotte, Hollway, Georgina, Perrin, Mark, Waddel-Smith, Kathryn, Cao, Michelle, Horton, Ari E., Perry, Matthew, Wallis, Mathew, Carr, Will, Howting, Denise, Pflaumer, Andreas, Weintraub, Robert G., Casauria, Sarah, Ingles, Jodie, Phillips, Peta, Wilson, Meredith, Chalinor, Heather, Isbister, Joanne, Phuong, Thuan, Winlaw, David, Chang, Yuchen, Jackson, Matilda, Pope-Couston, Rachel, Worgan, Lisa, Chapman, Gavin, James, Paul, Poplawski, Nicola K., Wornham, Linda, Charitou, Theosodia, Jane-Pantaleo, Sarah, Punni, Preeti, Wu, Kathy, Chong, Belinda, Johnson, Renee, Quinn, Michael C.J., Yeates, Laura, Collins, Felicity, Kelly, Andrew, Quinn, Michael, Zentner, Dominica, Correnti, Gemma, King-Smith, Sarah, Rajagopalan, Sulekha, Cox, Kathy, Kirk, Edwin, Raju, Hariharan, Cunningham, Fiona, Kummerfeld, Sarah, Rath, Emma M., Das, Debjani, Lassman, Timo, Regan, Matthew, Davis, Jason, Lipton, Jonathon, Rogers, Jonathan, Davis, Andrew, Lunke, Sebastian, Ryan, Mark, De Fazio, Paul, Macciocca, Ivan, Sandaradura, Sarah, de Silva, Michelle, MacIntyre, Paul, Schonrock, Nicole, Den Elzen, Nicola, Madelli, Evanthia O., Scuffham, Paul, Devery, Sophie, Mallawaarachchi, Amali, Semsarian, Chris, Dobbins, Julia, Mansour, Julia, Sherburn, Isabella, Dunwoodie, Sally L., Martin, Ellenore, Sherlock, Mary-Clare, Dwyer, Nathan, Mathew, Jacob, Singer, Emma, Elbracht-Leong, Stefanie, Mattiske, Tessa, Smerdon, Carla, Elliott, David, McGaughran, Julie, Smith, Janine, Brown, Jaye S., Haas, Matilda, and Pantaleo, Sarah-Jane
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- 2024
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7. Echocardiogram screening in pediatric dialysis and transplantation
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Le Page, Amelia K., Nagasundaram, Naganandini, Horton, Ari E., and Johnstone, Lilian M.
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Chronic kidney failure -- Complications and side effects -- Demographic aspects -- Care and treatment ,Echocardiography -- Usage ,Cardiovascular diseases -- Risk factors -- Demographic aspects ,Health - Abstract
Transthoracic echocardiography is commonly used to identify structural and functional cardiac abnormalities that can be prevalent in childhood chronic kidney failure (KF). Left ventricular mass (LVM) increase is most frequently reported and may persist post-kidney transplant especially with hypertension and obesity. While systolic dysfunction is infrequently seen in childhood chronic KF, systolic strain identified by speckle tracking echocardiography has been frequently identified in dialysis and it can also persist post-transplant. Echocardiogram association with long-term outcomes has not been studied in childhood KF but there are many adult studies demonstrating associations between increased LVM, systolic dysfunction, strain, diastolic dysfunction, and cardiovascular events and mortality. There has been limited study of interventions to improve echocardiogram status. In childhood, improved blood pressure has been associated with better LVM, and conversion from hemodialysis to hemodiafiltration has been associated with better diastolic and systolic function. Whether long-term cardiac outcomes are also improved with these interventions is unclear. Echocardiography is a well-established technique, and regular use in childhood chronic KF seems justified. A case can be made to extend screening to include speckle tracking echocardiography and intradialytic studies in high-risk populations. Further longitudinal studies including these newer echocardiogram modalities, interventions, and long-term outcomes would help clarify recommendations for optimal use as a screening tool., Author(s): Amelia K. Le Page [sup.1] [sup.2] , Naganandini Nagasundaram [sup.1] , Ari E. Horton [sup.2] [sup.3] [sup.4] , Lilian M. Johnstone [sup.1] [sup.2] Author Affiliations: (1) grid.460788.5, Department of [...]
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- 2023
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8. Elusive variants in autosomal recessive disease: how can we improve timely diagnosis?
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Horton, Ari E., Lunke, Sebastian, Sadedin, Simon, Fennell, Andrew P., and Stark, Zornitza
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- 2023
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9. Measuring neuronal avalanches to inform brain-computer interfaces
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Marie-Constance Corsi, Pierpaolo Sorrentino, Denis Schwartz, Nathalie George, Leonardo L. Gollo, Sylvain Chevallier, Laurent Hugueville, Ari E. Kahn, Sophie Dupont, Danielle S. Bassett, Viktor Jirsa, and Fabrizio De Vico Fallani
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Neuroscience ,Computer science ,Science - Abstract
Summary: Large-scale interactions among multiple brain regions manifest as bursts of activations called neuronal avalanches, which reconfigure according to the task at hand and, hence, might constitute natural candidates to design brain-computer interfaces (BCIs). To test this hypothesis, we used source-reconstructed magneto/electroencephalography during resting state and a motor imagery task performed within a BCI protocol. To track the probability that an avalanche would spread across any two regions, we built an avalanche transition matrix (ATM) and demonstrated that the edges whose transition probabilities significantly differed between conditions hinged selectively on premotor regions in all subjects. Furthermore, we showed that the topology of the ATMs allows task-decoding above the current gold standard. Hence, our results suggest that neuronal avalanches might capture interpretable differences between tasks that can be used to inform brain-computer interfaces.
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- 2024
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10. A multitiered analysis platform for genome sequencing: Design and initial findings of the Australian Genomics Cardiovascular Disorders Flagship
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Rachel Austin, Jaye S. Brown, Sarah Casauria, Evanthia O. Madelli, Tessa Mattiske, Tiffany Boughtwood, Alejandro Metke, Andrew Davis, Ari E. Horton, David Winlaw, Debjani Das, Magdalena Soka, Eleni Giannoulatou, Emma M. Rath, Eric Haan, Gillian M. Blue, Jitendra Vohra, John J. Atherton, Karin van Spaendonck-Zwarts, Kathy Cox, Leslie Burnett, Mathew Wallis, Matilda Haas, Michael C.J. Quinn, Nicholas Pachter, Nicola K. Poplawski, Zornitza Stark, Richard D. Bagnall, Robert G. Weintraub, Sarah-Jane Pantaleo, Sebastian Lunke, Paul De Fazio, Tina Thompson, Paul James, Yuchen Chang, Diane Fatkin, Ivan Macciocca, Jodie Ingles, Sally L. Dunwoodie, Chris Semsarian, Julie McGaughran, Lesley Ades, Annabel Enriquez, Alison McLean, Renee Smyth, Dimithu Alankarage, James McNamara, Morgan almog, Vanessa Fear, Caroline Medi, Mohammad Al-Shinnag, Miriam Fine, Raymond Sy, Keri Finlay, Di Milnes, Dotti Tang, Denisse Garza, Michael Milward, Jessica Taylor, Ansley Morrish, Shelby Taylor, Chris Barnett, Laura Gongolidis, Jim Morwood, Michel Tchan, Belinda Gray, Helen Mountain, Simon Bodek, Cassie Greer, David Mowat, Jordan Thorpe, Kirsten Boggs, Chai-Ann Ng, Alison Trainer, Michael Bogwitz, Mathilda Haas, Natalie Nowak, Gunjan Trivedi, Bernadette Hanna, Noelia Nunez Martinez, Giulia Valente, Alessandra Bray, Richard Harvey, Monique Ohanian, Marie-Jo Brion, Janette Hayward, Sinead O’Sullivan, Jamie Vandenberg, Jaye Brown, Carmen Herrera, Angela Overkov, Kunal Verma, Rob Bryson Richardson, Adam Hill, Miranda Vidgen, Georgie Hollingsworth, Chirag Patel, Charlotte Burns, Georgina Hollway, Mark Perrin, Kathryn Waddel-Smith, Michelle Cao, Matthew Perry, Will Carr, Denise Howting, Andreas Pflaumer, Peta Phillips, Meredith Wilson, Heather Chalinor, Joanne Isbister, Thuan Phuong, Matilda Jackson, Rachel Pope-Couston, Lisa Worgan, Gavin Chapman, Linda Wornham, Theosodia Charitou, Sarah Jane-Pantaleo, Preeti Punni, Kathy Wu, Belinda Chong, Renee Johnson, Laura Yeates, Felicity Collins, Andrew Kelly, Michael Quinn, Dominica Zentner, Gemma Correnti, Sarah King-Smith, Sulekha Rajagopalan, Edwin Kirk, Hariharan Raju, Fiona Cunningham, Sarah Kummerfeld, Timo Lassman, Matthew Regan, Jason Davis, Jonathon Lipton, Jonathan Rogers, Mark Ryan, Sarah Sandaradura, Michelle de Silva, Paul MacIntyre, Nicole Schonrock, Nicola Den Elzen, Paul Scuffham, Sophie Devery, Amali Mallawaarachchi, Julia Dobbins, Julia Mansour, Isabella Sherburn, Ellenore Martin, Mary-Clare Sherlock, Nathan Dwyer, Jacob Mathew, Emma Singer, Stefanie Elbracht-Leong, Carla Smerdon, David Elliott, and Janine Smith
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Australian Genomics ,Cardiovascular genetic disorders ,Genome sequencing ,Specialized multidisciplinary care ,Genetics ,QH426-470 ,Medicine - Abstract
Purpose: The Australian Genomics Cardiovascular Disorders Flagship was a national multidisciplinary collaboration. It aimed to investigate the feasibility of genome sequencing (GS) and functional genomics to resolve variants of uncertain significance (VUS) in the clinical management of patients and families with cardiomyopathies, primary arrhythmias, and congenital heart disease (CHD). Methods: Between April 2019 and December 2021, 600 probands meeting cardiovascular disorder criteria from 17 cardiology and genetics clinics across Australia were enrolled in the Flagship and underwent GS. The Flagship adopted a tiered approach to GS analysis. Tier 1 analysis assessed genes with established clinical validity for each cardiovascular condition. Tier 2 analysis assessed lesser-evidenced research-based genes. Tier 3 analysis assessed the functional impact of VUS that remained after tier 1 and tier 2 analysis. Results: Overall, a pathogenic or likely pathogenic variant was identified in 41% of participants with a cardiomyopathy, 40% with an arrhythmia syndrome, and 15% with a familial CHD/CHD+Extra Cardiac Anomalies. A VUS outcome ranged from 13% for arrhythmias to 34% for CHD/CHD+Extra Cardiac Anomalies participants. Tier 2 research analysis identified a likely pathogenic/pathogenic variant for a further 15 participants and a VUS for an additional 15 participants. Conclusion: The Flagship successfully facilitated a model of care that harnesses clinical GS and functional genomics for the resolution of VUS in the clinical setting. This valuable data set can be used to inform clinical practice and facilitate research into the future.
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- 2024
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11. BCI learning induces core-periphery reorganization in M/EEG multiplex brain networks
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Corsi, Marie-Constance, Chavez, Mario, Schwartz, Denis, George, Nathalie, Hugueville, Laurent, Kahn, Ari E., Dupont, Sophie, Bassett, Danielle S., and Fallani, Fabrizio De Vico
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Quantitative Biology - Neurons and Cognition - Abstract
Brain-computer interfaces (BCIs) constitute a promising tool for communication and control. However, mastering non-invasive closed-loop systems remains a learned skill that is difficult to develop for a non-negligible proportion of users. The involved learning process induces neural changes associated with a brain network reorganization that remains poorly understood. To address this inter-subject variability, we adopted a multilayer approach to integrate brain network properties from electroencephalographic (EEG) and magnetoencephalographic (MEG) data resulting from a four-session BCI training program followed by a group of healthy subjects. Our method gives access to the contribution of each layer to multilayer network that tends to be equal with time. We show that regardless the chosen modality, a progressive increase in the integration of somatosensory areas in the alpha band was paralleled by a decrease of the integration of visual processing and working memory areas in the beta band. Notably, only brain network properties in multilayer network correlated with future BCI scores in the alpha2 band: positively in somatosensory and decision-making related areas and negatively in associative areas. Our findings cast new light on neural processes underlying BCI training. Integrating multimodal brain network properties provides new information that correlates with behavioral performance and could be considered as a potential marker of BCI learning., Comment: This is the version of the article before editing, as submitted by an author to the Journal of Neural Engineering. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The Version of Record is available online athttp://iopscience.iop.org/article/10.1088/1741-2552/abef39
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- 2020
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12. Dual credit assignment processes underlie dopamine signals in a complex spatial environment
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Krausz, Timothy A., Comrie, Alison E., Kahn, Ari E., Frank, Loren M., Daw, Nathaniel D., and Berke, Joshua D.
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- 2023
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13. A practical guide to methodological considerations in the controllability of structural brain networks
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Karrer, Teresa M., Kim, Jason Z., Stiso, Jennifer, Kahn, Ari E., Pasqualetti, Fabio, Habel, Ute, and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition ,Quantitative Biology - Quantitative Methods - Abstract
Predicting how the brain can be driven to specific states by means of internal or external control requires a fundamental understanding of the relationship between neural connectivity and activity. Network control theory is a powerful tool from the physical and engineering sciences that can provide insights regarding that relationship; it formalizes the study of how the dynamics of a complex system can arise from its underlying structure of interconnected units. Given the recent use of network control theory in neuroscience, it is now timely to offer a practical guide to methodological considerations in the controllability of structural brain networks. Here we provide a systematic overview of the framework, examine the impact of modeling choices on frequently studied control metrics, and suggest potentially useful theoretical extensions. We ground our discussions, numerical demonstrations, and theoretical advances in a dataset of high-resolution diffusion imaging with 730 diffusion directions acquired over approximately 1 hour of scanning from ten healthy young adults. Following a didactic introduction of the theory, we probe how a selection of modeling choices affects four common statistics: average controllability, modal controllability, minimum control energy, and optimal control energy. Next, we extend the current state of the art in two ways: first, by developing an alternative measure of structural connectivity that accounts for radial propagation of activity through abutting tissue, and second, by defining a complementary metric quantifying the complexity of the energy landscape of a system. We close with specific modeling recommendations and a discussion of methodological constraints.
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- 2019
14. Human information processing in complex networks
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Lynn, Christopher W., Papadopoulos, Lia, Kahn, Ari E., and Bassett, Danielle S.
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Physics - Physics and Society ,Physics - Biological Physics ,Quantitative Biology - Neurons and Cognition - Abstract
Humans communicate using systems of interconnected stimuli or concepts -- from language and music to literature and science -- yet it remains unclear how, if at all, the structure of these networks supports the communication of information. Although information theory provides tools to quantify the information produced by a system, traditional metrics do not account for the inefficient ways that humans process this information. Here we develop an analytical framework to study the information generated by a system as perceived by a human observer. We demonstrate experimentally that this perceived information depends critically on a system's network topology. Applying our framework to several real networks, we find that they communicate a large amount of information (having high entropy) and do so efficiently (maintaining low divergence from human expectations). Moreover, we show that such efficient communication arises in networks that are simultaneously heterogeneous, with high-degree hubs, and clustered, with tightly-connected modules -- the two defining features of hierarchical organization. Together, these results suggest that many communication networks are constrained by the pressures of information transmission, and that these pressures select for specific structural features., Comment: 87 pages, 26 figures, 13 tables
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- 2019
15. Functional brain network architecture supporting the learning of social networks in humans
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Tompson, Steven H., Kahn, Ari E., Falk, Emily B., Vettel, Jean M., and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition - Abstract
Most humans have the good fortune to live their lives embedded in richly structured social groups. Yet, it remains unclear how humans acquire knowledge about these social structures to successfully navigate social relationships. Here we address this knowledge gap with an interdisciplinary neuroimaging study drawing on recent advances in network science and statistical learning. Specifically, we collected BOLD MRI data while participants learned the community structure of both social and non-social networks, in order to examine whether the learning of these two types of networks was differentially associated with functional brain network topology. From the behavioral data in both tasks, we found that learners were sensitive to the community structure of the networks, as evidenced by a slower reaction time on trials transitioning between clusters than on trials transitioning within a cluster. From the neuroimaging data collected during the social network learning task, we observed that the functional connectivity of the hippocampus and temporoparietal junction was significantly greater when transitioning between clusters than when transitioning within a cluster. Furthermore, temporoparietal regions of the default mode were more strongly connected to hippocampus, somatomotor, and visual regions during the social task than during the non-social task. Collectively, our results identify neurophysiological underpinnings of social versus non-social network learning, extending our knowledge about the impact of social context on learning processes. More broadly, this work offers an empirical approach to study the learning of social network structures, which could be fruitfully extended to other participant populations, various graph architectures, and a diversity of social contexts in future studies.
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- 2019
16. Abstract representations of events arise from mental errors in learning and memory
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Lynn, Christopher W., Kahn, Ari E., Nyema, Nathaniel, and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition ,Physics - Biological Physics ,Physics - Physics and Society - Abstract
Humans are adept at uncovering abstract associations in the world around them, yet the underlying mechanisms remain poorly understood. Intuitively, learning the higher-order structure of statistical relationships should involve complex mental processes. Here we propose an alternative perspective: that higher-order associations instead arise from natural errors in learning and memory. Combining ideas from information theory and reinforcement learning, we derive a maximum entropy (or minimum complexity) model of people's internal representations of the transitions between stimuli. Importantly, our model (i) affords a concise analytic form, (ii) qualitatively explains the effects of transition network structure on human expectations, and (iii) quantitatively predicts human reaction times in probabilistic sequential motor tasks. Together, these results suggest that mental errors influence our abstract representations of the world in significant and predictable ways, with direct implications for the study and design of optimally learnable information sources., Comment: 73 pages, 11 figures, 11 tables
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- 2018
17. White Matter Network Architecture Guides Direct Electrical Stimulation Through Optimal State Transitions
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Stiso, Jennifer, Khambhati, Ankit N., Menara, Tommaso, Kahn, Ari E., Stein, Joel M., Das, Sandihitsu R., Gorniak, Richard, Tracy, Joseph, Litt, Brian, Davis, Kathryn A., Pasqualetti, Fabio, Lucas, Timothy, and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition - Abstract
Electrical brain stimulation is currently being investigated as a therapy for neurological disease. However, opportunities to optimize such therapies are challenged by the fact that the beneficial impact of focal stimulation on both neighboring and distant regions is not well understood. Here, we use network control theory to build a model of brain network function that makes predictions about how stimulation spreads through the brain's white matter network and influences large-scale dynamics. We test these predictions using combined electrocorticography (ECoG) and diffusion weighted imaging (DWI) data who volunteered to participate in an extensive stimulation regimen. We posit a specific model-based manner in which white matter tracts constrain stimulation, defining its capacity to drive the brain to new states, including states associated with successful memory encoding. In a first validation of our model, we find that the true pattern of white matter tracts can be used to more accurately predict the state transitions induced by direct electrical stimulation than the artificial patterns of null models. We then use a targeted optimal control framework to solve for the optimal energy required to drive the brain to a given state. We show that, intuitively, our model predicts larger energy requirements when starting from states that are farther away from a target memory state. We then suggest testable hypotheses about which structural properties will lead to efficient stimulation for improving memory based on energy requirements. Our work demonstrates that individual white matter architecture plays a vital role in guiding the dynamics of direct electrical stimulation, more generally offering empirical support for the utility of network control theoretic models of brain response to stimulation.
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- 2018
18. White Matter Network Architecture Guides Direct Electrical Stimulation through Optimal State Transitions
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Stiso, Jennifer, Khambhati, Ankit N, Menara, Tommaso, Kahn, Ari E, Stein, Joel M, Das, Sandihitsu R, Gorniak, Richard, Tracy, Joseph, Litt, Brian, Davis, Kathryn A, Pasqualetti, Fabio, Lucas, Timothy H, and Bassett, Danielle S
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Biological Sciences ,Clinical Research ,Biomedical Imaging ,Epilepsy ,Neurodegenerative ,Brain Disorders ,Neurosciences ,Bioengineering ,1.1 Normal biological development and functioning ,Underpinning research ,Neurological ,Adult ,Electric Stimulation ,Female ,Humans ,Male ,Models ,Neurological ,Neural Pathways ,White Matter ,brain network ,brain stimulation ,network control theory ,q-bio.NC ,Biochemistry and Cell Biology ,Medical Physiology ,Biological sciences - Abstract
Optimizing direct electrical stimulation for the treatment of neurological disease remains difficult due to an incomplete understanding of its physical propagation through brain tissue. Here, we use network control theory to predict how stimulation spreads through white matter to influence spatially distributed dynamics. We test the theory's predictions using a unique dataset comprising diffusion weighted imaging and electrocorticography in epilepsy patients undergoing grid stimulation. We find statistically significant shared variance between the predicted activity state transitions and the observed activity state transitions. We then use an optimal control framework to posit testable hypotheses regarding which brain states and structural properties will efficiently improve memory encoding when stimulated. Our work quantifies the role that white matter architecture plays in guiding the dynamics of direct electrical stimulation and offers empirical support for the utility of network control theory in explaining the brain's response to stimulation.
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- 2019
19. Functional control of electrophysiological network architecture using direct neurostimulation in humans
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Khambhati, Ankit N, Kahn, Ari E, Costantini, Julia, Ezzyat, Youssef, Solomon, Ethan A, Gross, Robert E, Jobst, Barbara C, Sheth, Sameer A, Zaghloul, Kareem A, Worrell, Gregory, Seger, Sarah, Lega, Bradley C, Weiss, Shennan, Sperling, Michael R, Gorniak, Richard, Das, Sandhitsu R, Stein, Joel M, Rizzuto, Daniel S, Kahana, Michael J, Lucas, Timothy H, Davis, Kathryn A, Tracy, Joseph I, and Bassett, Danielle S
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Biological Psychology ,Psychology ,Neurosciences ,Brain Disorders ,Assistive Technology ,Bioengineering ,Neurological ,Neurostimulation ,Electrocorticography ,Structural controllability ,Reconfiguration ,Biological psychology - Abstract
Chronically implantable neurostimulation devices are becoming a clinically viable option for treating patients with neurological disease and psychiatric disorders. Neurostimulation offers the ability to probe and manipulate distributed networks of interacting brain areas in dysfunctional circuits. Here, we use tools from network control theory to examine the dynamic reconfiguration of functionally interacting neuronal ensembles during targeted neurostimulation of cortical and subcortical brain structures. By integrating multimodal intracranial recordings and diffusion-weighted imaging from patients with drug-resistant epilepsy, we test hypothesized structural and functional rules that predict altered patterns of synchronized local field potentials. We demonstrate the ability to predictably reconfigure functional interactions depending on stimulation strength and location. Stimulation of areas with structurally weak connections largely modulates the functional hubness of downstream areas and concurrently propels the brain towards more difficult-to-reach dynamical states. By using focal perturbations to bridge large-scale structure, function, and markers of behavior, our findings suggest that stimulation may be tuned to influence different scales of network interactions driving cognition.
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- 2019
20. Network constraints on learnability of probabilistic motor sequences
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Kahn, Ari E., Karuza, Elisabeth A., Vettel, Jean M., and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition - Abstract
Human learners are adept at grasping the complex relationships underlying incoming sequential input. In the present work, we formalize complex relationships as graph structures derived from temporal associations in motor sequences. Next, we explore the extent to which learners are sensitive to key variations in the topological properties inherent to those graph structures. Participants performed a probabilistic motor sequence task in which the order of button presses was determined by the traversal of graphs with modular, lattice-like, or random organization. Graph nodes each represented a unique button press and edges represented a transition between button presses. Results indicate that learning, indexed here by participants' response times, was strongly mediated by the graph's meso-scale organization, with modular graphs being associated with shorter response times than random and lattice graphs. Moreover, variations in a node's number of connections (degree) and a node's role in mediating long-distance communication (betweenness centrality) impacted graph learning, even after accounting for level of practice on that node. These results demonstrate that the graph architecture underlying temporal sequences of stimuli fundamentally constrains learning, and moreover that tools from network science provide a valuable framework for assessing how learners encode complex, temporally structured information., Comment: 29 pages, 4 figures
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- 2017
21. Individual Differences in Learning Social and Non-Social Network Structures
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Tompson, Steven H., Kahn, Ari E., Falk, Emily B., Vettel, Jean M., and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition - Abstract
Learning about complex associations between pieces of information enables individuals to quickly adjust their expectations and develop mental models. Yet, the degree to which humans can learn higher-order information about complex associations is not well understood; nor is it known whether the learning process differs for social and non-social information. Here, we employ a paradigm in which the order of stimulus presentation forms temporal associations between the stimuli, collectively constituting a complex network structure. We examined individual differences in the ability to learn network topology for which stimuli were social versus non-social. Although participants were able to learn both social and non-social networks, their performance in social network learning was uncorrelated with their performance in non-social network learning. Importantly, social traits, including social orientation and perspective-taking, uniquely predicted the learning of social networks but not the learning of non-social networks. Taken together, our results suggest that the process of learning higher-order structure in social networks is independent from the process of learning higher-order structure in non-social networks. Our study design provides a promising approach to identify neurophysiological drivers of social network versus non-social network learning, extending our knowledge about the impact of individual differences on these learning processes. Implications for how people learn and adapt to new social contexts that require integration into a new social network are discussed.
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- 2017
22. Inter-regional ECoG correlations predicted by communication dynamics, geometry, and correlated gene expression
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Betzel, Richard F., Medaglia, John D., Kahn, Ari E., Soffer, Jonathan, Schonhaut, Daniel R., and Bassett, Danielle S.
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Quantitative Biology - Neurons and Cognition - Abstract
Electrocorticography (ECoG) provides direct measurements of synchronized postsynaptic potentials at the exposed cortical surface. Patterns of signal covariance across ECoG sensors have been associated with diverse cognitive functions and remain a critical marker of seizure onset, progression, and termination. Yet, a systems level understanding of these patterns (or networks) has remained elusive, in part due to variable electrode placement and sparse cortical coverage. Here, we address these challenges by constructing inter-regional ECoG networks from multi-subject recordings, demonstrate similarities between these networks and those constructed from blood-oxygen-level-dependent signal in functional magnetic resonance imaging, and predict network topology from anatomical connectivity, interregional distance, and correlated gene expression patterns. Our models accurately predict out-of-sample ECoG networks and perform well even when fit to data from individual subjects, suggesting shared organizing principles across persons. In addition, we identify a set of genes whose brain-wide co-expression is highly correlated with ECoG network organization. Using gene ontology analysis, we show that these same genes are enriched for membrane and ion channel maintenance and function, suggesting a molecular underpinning of ECoG connectivity. Our findings provide fundamental understanding of the factors that influence interregional ECoG networks, and open the possibility for predictive modeling of surgical outcomes in disease., Comment: 36 pages, 4 figures + 2 tables (main text), 14 figures + 7 tables (supplementary materials)
- Published
- 2017
23. Topological Principles of Control in Dynamical Network Systems
- Author
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Kim, Jason, Soffer, Jonathan M., Kahn, Ari E., Vettel, Jean M., Pasqualetti, Fabio, and Bassett, Danielle S.
- Subjects
Quantitative Biology - Neurons and Cognition - Abstract
Networked systems display complex patterns of interactions between a large number of components. In physical networks, these interactions often occur along structural connections that link components in a hard-wired connection topology, supporting a variety of system-wide dynamical behaviors such as synchronization. While descriptions of these behaviors are important, they are only a first step towards understanding the relationship between network topology and system behavior, and harnessing that relationship to optimally control the system's function. Here, we use linear network control theory to analytically relate the topology of a subset of structural connections (those linking driver nodes to non-driver nodes) to the minimum energy required to control networked systems. As opposed to the numerical computations of control energy, our accurate closed-form expressions yield general structural features in networks that require significantly more or less energy to control, providing topological principles for the design and modification of network behavior. To illustrate the utility of the mathematics, we apply this approach to high-resolution connectomes recently reconstructed from drosophila, mouse, and human brains. We use these principles to show that connectomes of increasingly complex species are wired to reduce control energy. We then use the analytical expressions we derive to perform targeted manipulation of the brain's control profile by removing single edges in the network, a manipulation that is accessible to current clinical techniques in patients with neurological disorders. Cross-species comparisons suggest an advantage of the human brain in supporting diverse network dynamics with small energetic costs, while remaining unexpectedly robust to perturbations. Our results ground the expectation of a system's dynamical behavior in its network architecture., Comment: 7 figures, Supplement
- Published
- 2017
- Full Text
- View/download PDF
24. Process reveals structure: How a network is traversed mediates expectations about its architecture
- Author
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Karuza, Elisabeth A., Kahn, Ari E., Thompson-Schill, Sharon L., and Bassett, Danielle S.
- Subjects
Quantitative Biology - Neurons and Cognition - Abstract
Network science has emerged as a powerful tool through which we can study the higher-order architectural properties of the world around us. How human learners exploit this information remains an essential question. Here, we focus on the temporal constraints that govern such a process. Participants viewed a continuous sequence of images generated by three distinct walks on a modular network. Walks varied along two critical dimensions: their predictability and the density with which they sampled from communities of images. Learners exposed to walks that richly sampled from each community exhibited a sharp increase in processing time upon entry into a new community. This effect was eliminated in a highly regular walk that sampled exhaustively from images in short, successive cycles (i.e., that increasingly minimized uncertainty about the nature of upcoming stimuli). These results demonstrate that temporal organization plays an essential role in how robustly knowledge of network architecture is acquired., Comment: 22 pages, 2 figures, 1 table, plus supplement
- Published
- 2017
25. Publisher Correction: Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells
- Author
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Tycko, Josh, Barrera, Luis A, Huston, Nicholas C, Friedland, Ari E, Wu, Xuebing, Gootenberg, Jonathan S, Abudayyeh, Omar O, Myer, Vic E, Wilson, Christopher J, and Hsu, Patrick D
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Research ,Good Health and Well Being - Abstract
The original HTML version of this Article incorrectly listed an affiliation of Josh Tycko as 'Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA', instead of the correct 'Present address: Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA'. It also incorrectly listed an affiliation of this author as 'Present address: Arrakis Therapeutics, 35 Gatehouse Dr., Waltham, MA, 02451, USA'.The original HTML version incorrectly listed an affiliation of Luis A. Barrera as 'Present address: Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06511, USA', instead of the correct 'Present address: Arrakis Therapeutics, 35 Gatehouse Dr., Waltham, MA 02451, USA'.Finally, the original HTML version incorrectly omitted an affiliation of Nicholas C. Huston: 'Present address: Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA'.This has been corrected in the HTML version of the Article. The PDF version was correct from the time of publication.
- Published
- 2018
26. Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells
- Author
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Tycko, Josh, Barrera, Luis A, Huston, Nicholas C, Friedland, Ari E, Wu, Xuebing, Gootenberg, Jonathan S, Abudayyeh, Omar O, Myer, Vic E, Wilson, Christopher J, and Hsu, Patrick D
- Subjects
Microbiology ,Biological Sciences ,Genetics ,Human Genome ,Biotechnology ,Bacterial Proteins ,Base Sequence ,CRISPR-Associated Protein 9 ,CRISPR-Cas Systems ,Cloning ,Molecular ,Clustered Regularly Interspaced Short Palindromic Repeats ,Gene Editing ,Gene Library ,Genes ,Bacterial ,HEK293 Cells ,Humans ,RNA ,Guide ,Kinetoplastida ,Staphylococcus aureus - Abstract
Therapeutic genome editing with Staphylococcus aureus Cas9 (SaCas9) requires a rigorous understanding of its potential off-target activity in the human genome. Here we report a high-throughput screening approach to measure SaCas9 genome editing variation in human cells across a large repertoire of 88,692 single guide RNAs (sgRNAs) paired with matched or mismatched target sites in a synthetic cassette. We incorporate randomized barcodes that enable whitelisting of correctly synthesized molecules for further downstream analysis, in order to circumvent the limitation of oligonucleotide synthesis errors. We find SaCas9 sgRNAs with 21-mer or 22-mer spacer sequences are generally more active, although high efficiency 20-mer spacers are markedly less tolerant of mismatches. Using this dataset, we developed an SaCas9 specificity model that performs robustly in ranking off-target sites. The barcoded pairwise library screen enabled high-fidelity recovery of guide-target relationships, providing a scalable framework for the investigation of CRISPR enzyme properties and general nucleic acid interactions.
- Published
- 2018
27. Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth
- Author
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Baum, Graham L., Ciric, Rastko, Roalf, David R., Betzel, Richard F., Moore, Tyler M., Shinohara, Russel T., Kahn, Ari E., Quarmley, Megan, Cook, Philip A., Elliot, Mark A., Ruparel, Kosha, Gur, Raquel E., Gur, Ruben C., Bassett, Danielle S., and Satterthwaite, Theodore D.
- Subjects
Quantitative Biology - Neurons and Cognition - Abstract
The human brain is organized into large-scale functional modules that have been shown to evolve in childhood and adolescence. However, it remains unknown whether structural brain networks are similarly refined during development, potentially allowing for improvements in executive function. In a sample of 882 participants (ages 8-22) who underwent diffusion imaging as part of the Philadelphia Neurodevelopmental Cohort, we demonstrate that structural network modules become more segregated with age, with weaker connections between modules and stronger connections within modules. Evolving modular topology facilitated network integration, driven by age-related strengthening of hub edges that were present both within and between modules. Critically, both modular segregation and network integration were associated with enhanced executive performance, and mediated the improvement of executive functioning with age. Together, results delineate a process of structural network maturation that supports executive function in youth.
- Published
- 2016
28. Developmental increases in white matter network controllability support a growing diversity of brain dynamics
- Author
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Tang, Evelyn, Giusti, Chad, Baum, Graham, Gu, Shi, Pollock, Eli, Kahn, Ari E., Roalf, David, Moore, Tyler M., Ruparel, Kosha, Gur, Ruben C., Gur, Raquel E., Satterthwaite, Theodore D., and Bassett, Danielle S.
- Subjects
Quantitative Biology - Neurons and Cognition ,Condensed Matter - Disordered Systems and Neural Networks ,Nonlinear Sciences - Chaotic Dynamics ,Quantitative Biology - Quantitative Methods - Abstract
As the human brain develops, it increasingly supports coordinated control of neural activity. The mechanism by which white matter evolves to support this coordination is not well understood. We use a network representation of diffusion imaging data from 882 youth ages 8 to 22 to show that white matter connectivity becomes increasingly optimized for a diverse range of predicted dynamics in development. Notably, stable controllers in subcortical areas are negatively related to cognitive performance. Investigating structural mechanisms supporting these changes, we simulate network evolution with a set of growth rules. We find that all brain networks are structured in a manner highly optimized for network control, with distinct control mechanisms predicted in child versus older youth. We demonstrate that our results cannot be simply explained by changes in network modularity. This work reveals a possible mechanism of human brain development that preferentially optimizes dynamic network control over static network architecture., Comment: In press at Nature Communications
- Published
- 2016
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29. Structural Pathways Supporting Swift Acquisition of New Visuo-Motor Skills
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Kahn, Ari E., Mattar, Marcelo G., Vettel, Jean M., Wymbs, Nicholas F., Grafton, Scott T., and Bassett, Danielle S.
- Subjects
Quantitative Biology - Neurons and Cognition - Abstract
Human skill learning requires fine-scale coordination of distributed networks of brain regions that are directly linked to one another by white matter tracts to allow for effective information transmission. Yet how individual differences in these anatomical pathways may impact individual differences in learning remains far from understood. Here, we test the hypothesis that individual differences in the organization of structural networks supporting task performance predict individual differences in the rate at which humans learn a visuo-motor skill. Over the course of 6 weeks, twenty-two healthy adult subjects practiced a discrete sequence production task, where they learned a sequence of finger movements based on discrete visual cues. We collected structural imaging data during four MRI scanning sessions spaced approximately two weeks apart, and using deterministic tractography, structural networks were generated for each participant to identify streamlines that connect cortical and sub-cortical brain regions. We observed that increased white matter connectivity linking early visual (but not motor) regions was associated with a faster learning rate. Moreover, we observed that the strength of multi-edge paths between motor and visual modules was also correlated with learning rate, supporting the role of polysynaptic connections in successful skill acquisition. Our results demonstrate that the combination of diffusion imaging and tractography-based connectivity can be used to predict future individual differences in learning capacity, particularly when combined with methods from network science and graph theory., Comment: 11 pages, 6 figures
- Published
- 2016
30. Synopsis of an integrated guidance for enhancing the care of familial hypercholesterolaemia: an Australian perspective
- Author
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Ademi, Zanfina, Ardill, Justin J, Barnett, Wendy, Bates, Timothy R, Beilin, Lawrence J, Bishop, Warrick, Black, J Andrew, Brown, Alex, Burnett, John R, Bursill, Christina A, Colley, Alison, Clifton, Peter M, Ekinci, Elif I, Figtree, Gemma A, Forge, Brett H, Garton-Smith, Jacquie, Graham, Dorothy F, Hamilton-Craig, Ian, Hamilton-Craig, Christian R, Heal, Clare, Hespe, Charlotte M, Hooper, Amanda J, Howes, Laurence G, Ingles, Jodie, Janus, Edward D, Kangaharan, Nadarajah, Keech, Anthony C, Kirke, Andrew B, Kritharides, Leonard, Kyle, Campbell V, Lacaze, Paul, Li, Stephen CH, Maticevic, Stjepana, McQuillan, Brendan M, Mirzaee, Sam, Mori, Trevor A, Morton, Allison C, Colquhoun, David M, Moullin, Joanna C, Nestel, Paul J, Nowak, Kristen J, O'Brien, Richard C, Pachter, Nicholas, Page, Michael M, Psaltis, Peter J, Radford, Jan, Reid, Nicola J, Robertson, Elizabeth N, Ryan, Jacqueline DM, Sarkies, Mitchell N, Schultz, Carl J, Scott, Russell S, Semsarian, Christopher, Simons, Leon A, Spinks, Catherine, Tonkin, Andrew M, van Bockxmeer, Frank, Waddell-Smith, Kathryn E, Ward, Natalie C, White, Harvey D, Wilson, Andrew M, Winship, Ingrid, Woodward, Ann Marie, Nicholls, Stephen J, Brett, Peter, Elias, Luke, Malan, Wynand, Irvin, John, Lambert, Kirsten, Pedrotti, Annette, Watts, Gerald F., Sullivan, David R., Hare, David L., Kostner, Karam M., Horton, Ari E., Bell, Damon A., Brett, Tom, Trent, Ronald J., Poplawski, Nicola K., Martin, Andrew C., Srinivasan, Shubha, Justo, Robert N., Chow, Clara K., and Pang, Jing
- Published
- 2021
- Full Text
- View/download PDF
31. Integrated Guidance for Enhancing the Care of Familial Hypercholesterolaemia in Australia
- Author
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Ademi, Zanfina, Ardill, Justin J., Barnett, Wendy, Bates, Timothy R., Beilin, Lawrence J., Bishop, Warrick, Black, J. Andrew, Brett, Peter, Brown, Alex, Burnett, John R., Bursill, Christina A., Colley, Alison, Clifton, Peter M., Ekinci, Elif I., Elias, Luke, Figtree, Gemma A., Forge, Brett H., Garton-Smith, Jacquie, Graham, Dorothy F., Hamilton-Craig, Ian, Hamilton-Craig, Christian R., Heal, Clare, Hespe, Charlotte M., Hooper, Amanda J., Howes, Laurence G., Ingles, Jodie, Irvin, John, Janus, Edward D., Kangaharan, Nadarajah, Keech, Anthony C., Kirke, Andrew B., Kritharides, Leonard, Kyle, Campbell V., Lacaze, Paul, Lambert, Kirsten, Li, Stephen C.H., Malan, Wynand, Maticevic, Stjepana, McQuillan, Brendan M., Mirzaee, Sam, Mori, Trevor A., Morton, Allison C., Colquhoun, David M., Moullin, Joanna C., Nestel, Paul J., Nowak, Kristen J., O'Brien, Richard C., Pachter, Nicholas, Page, Michael M., Pedrotti, Annette, Psaltis, Peter J., Radford, Jan, Reid, Nicola J., Robertson, Elizabeth N., Ryan, Jacqueline D.M., Sarkies, Mitchell N., Schultz, Carl J., Scott, Russell S., Semsarian, Christopher, Simons, Leon A., Spinks, Catherine, Tonkin, Andrew M., van Bockxmeer, Frank, Waddell-Smith, Kathryn E., Ward, Natalie C., White, Harvey D., Wilson, Andrew M., Winship, Ingrid, Woodward, Ann Marie, Nicholls, Stephen J., Watts, Gerald F., Sullivan, David R., Hare, David L., Kostner, Karam M., Horton, Ari E., Bell, Damon A., Brett, Tom, Trent, Ronald J., Poplawski, Nicola K., Martin, Andrew C., Srinivasan, Shubha, Justo, Robert N., Chow, Clara K., and Pang, Jing
- Published
- 2021
- Full Text
- View/download PDF
32. Individual Differences in Learning Social and Nonsocial Network Structures
- Author
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Tompson, Steven H., Kahn, Ari E., Falk, Emily B., Vettel, Jean M., and Bassett, Danielle S.
- Abstract
How do people acquire knowledge about which individuals belong to different cliques or communities? And to what extent does this learning process differ from the process of learning higher-order information about complex associations between nonsocial bits of information? Here, the authors use a paradigm in which the order of stimulus presentation forms temporal associations between the stimuli, collectively constituting a complex network. They examined individual differences in the ability to learn community structure of networks composed of social versus nonsocial stimuli. Although participants were able to learn community structure of both social and nonsocial networks, their performance in social network learning was uncorrelated with their performance in nonsocial network learning. In addition, social traits, including social orientation and perspective-taking, uniquely predicted the learning of social community structure but not the learning of nonsocial community structure. Taken together, the results suggest that the process of learning higher-order community structure in social networks is partially distinct from the process of learning higher-order community structure in nonsocial networks. The study design provides a promising approach to identify neurophysiological drivers of social network versus nonsocial network learning, extending knowledge about the impact of individual differences on these learning processes.
- Published
- 2019
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- View/download PDF
33. Corrigendum to Synopsis of an integrated guidance for enhancing the care of familial hypercholesterolaemia: An Australian perspective [American Journal of Preventive Cardiology 6 (2021) 100151]
- Author
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Gerald F. Watts, David R. Sullivan, David L. Hare, Karam M. Kostner, Ari E. Horton, Damon A. Bell, Tom Brett, Ronald J. Trent, Nicola K. Poplawski, Andrew C. Martin, Shubha Srinivasan, Robert N. Justo, Clara K. Chow, and Jing Pang
- Subjects
Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Public aspects of medicine ,RA1-1270 - Published
- 2022
- Full Text
- View/download PDF
34. Functional brain network architecture supporting the learning of social networks in humans
- Author
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Tompson, Steven H., Kahn, Ari E., Falk, Emily B., Vettel, Jean M., and Bassett, Danielle S.
- Published
- 2020
- Full Text
- View/download PDF
35. Functional disconnection of associative cortical areas predicts performance during BCI training
- Author
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Corsi, Marie-Constance, Chavez, Mario, Schwartz, Denis, George, Nathalie, Hugueville, Laurent, Kahn, Ari E., Dupont, Sophie, Bassett, Danielle S., and De Vico Fallani, Fabrizio
- Published
- 2020
- Full Text
- View/download PDF
36. Gene selection for genomic newborn screening: moving towards consensus?
- Author
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Downie, Lilian, primary, Bouffler, Sophie E., additional, Amor, David J., additional, Christodoulou, John, additional, Yeung, Alison, additional, Horton, Ari E., additional, Macciocca, Ivan, additional, Archibald, Alison D., additional, Wall, Meghan, additional, Caruana, Jade, additional, Lunke, Sebastian, additional, and Stark, Zornitza, additional
- Published
- 2024
- Full Text
- View/download PDF
37. Abstract representations of events arise from mental errors in learning and memory
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Christopher W. Lynn, Ari E. Kahn, Nathaniel Nyema, and Danielle S. Bassett
- Subjects
Science - Abstract
Humans can easily uncover abstract associations. Here, the authors propose that higher-order associations arise from natural errors in learning and memory. They suggest that mental errors influence the humans’ representation of the world in significant and predictable ways.
- Published
- 2020
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- View/download PDF
38. Human information processing in complex networks
- Author
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Lynn, Christopher W., Papadopoulos, Lia, Kahn, Ari E., and Bassett, Danielle S.
- Published
- 2020
- Full Text
- View/download PDF
39. Controllability of structural brain networks.
- Author
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Gu, Shi, Pasqualetti, Fabio, Cieslak, Matthew, Telesford, Qawi K, Yu, Alfred B, Kahn, Ari E, Medaglia, John D, Vettel, Jean M, Miller, Michael B, Grafton, Scott T, and Bassett, Danielle S
- Subjects
Brain ,Nerve Net ,Humans ,Cognition ,Adult ,Female ,Male ,Young Adult ,q-bio.NC ,cs.SY - Abstract
Cognitive function is driven by dynamic interactions between large-scale neural circuits or networks, enabling behaviour. However, fundamental principles constraining these dynamic network processes have remained elusive. Here we use tools from control and network theories to offer a mechanistic explanation for how the brain moves between cognitive states drawn from the network organization of white matter microstructure. Our results suggest that densely connected areas, particularly in the default mode system, facilitate the movement of the brain to many easily reachable states. Weakly connected areas, particularly in cognitive control systems, facilitate the movement of the brain to difficult-to-reach states. Areas located on the boundary between network communities, particularly in attentional control systems, facilitate the integration or segregation of diverse cognitive systems. Our results suggest that structural network differences between cognitive circuits dictate their distinct roles in controlling trajectories of brain network function.
- Published
- 2015
40. Synopsis of an integrated guidance for enhancing the care of familial hypercholesterolaemia: an Australian perspective
- Author
-
Gerald F. Watts, David R. Sullivan, David L. Hare, Karam M. Kostner, Ari E. Horton, Damon A. Bell, Tom Brett, Ronald J. Trent, Nicola K. Poplawski, Andrew C. Martin, Shubha Srinivasan, Robert N. Justo, Clara K. Chow, Jing Pang, Zanfina Ademi, Justin J Ardill, Wendy Barnett, Timothy R Bates, Lawrence J Beilin, Warrick Bishop, J Andrew Black, Alex Brown, John R Burnett, Christina A Bursill, Alison Colley, Peter M Clifton, Elif I Ekinci, Gemma A Figtree, Brett H Forge, Jacquie Garton-Smith, Dorothy F Graham, Ian Hamilton-Craig, Christian R Hamilton-Craig, Clare Heal, Charlotte M Hespe, Amanda J Hooper, Laurence G Howes, Jodie Ingles, Edward D Janus, Nadarajah Kangaharan, Anthony C Keech, Andrew B Kirke, Leonard Kritharides, Campbell V Kyle, Paul Lacaze, Stephen CH Li, Stjepana Maticevic, Brendan M McQuillan, Sam Mirzaee, Trevor A Mori, Allison C Morton, David M Colquhoun, Joanna C Moullin, Paul J Nestel, Kristen J Nowak, Richard C O'Brien, Nicholas Pachter, Michael M Page, Peter J Psaltis, Jan Radford, Nicola J Reid, Elizabeth N Robertson, Jacqueline DM Ryan, Mitchell N Sarkies, Carl J Schultz, Russell S Scott, Christopher Semsarian, Leon A Simons, Catherine Spinks, Andrew M Tonkin, Frank van Bockxmeer, Kathryn E Waddell-Smith, Natalie C Ward, Harvey D White, Andrew M Wilson, Ingrid Winship, Ann Marie Woodward, Stephen J Nicholls, Peter Brett, Luke Elias, Wynand Malan, John Irvin, Kirsten Lambert, and Annette Pedrotti
- Subjects
Familial hypercholesterolaemia ,Guidance ,Care ,Management ,Adults ,Children ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Introduction: Familial hypercholesterolaemia (FH) is a common, heritable and preventable cause of premature coronary artery disease, with significant potential for positive impact on public health and healthcare savings. New clinical practice recommendations are presented in an abridged guidance to assist practitioners in enhancing the care of all patients with FH. Main recommendations: Core recommendations are made on the detection, diagnosis, assessment and management of adults, children and adolescents with FH. There is a key role for general practitioners (GPs) working in collaboration with specialists with expertise in lipidology. Advice is given on genetic and cholesterol testing and risk notification of biological relatives undergoing cascade testing for FH; all healthcare professionals should develop skills in genomic medicine. Management is under-pinned by the precepts of risk stratification, adherence to healthy lifestyles, treatment of non-cholesterol risk factors, and appropriate use of low-density lipoprotein (LDL)-cholesterol lowering therapies, including statins, ezetimibe and proprotein convertase subtilisin/kexin type 9 (PCSK9) inhibitors. Recommendations on service design are provided in the full guidance. Potential impact on care of FH: These recommendations need to be utilised using judicious clinical judgement and shared decision making with patients and families. Models of care need to be adapted to both local and regional needs and resources. In Australia new government funded schemes for genetic testing and use of PCSK9 inhibitors, as well as the National Health Genomics Policy Framework, will enable adoption of these recommendations. A broad implementation science strategy is, however, required to ensure that the guidance translates into benefit for all families with FH.
- Published
- 2021
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- View/download PDF
41. Humans rationally balance detailed and temporally abstract world models
- Author
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Kahn, Ari E., primary and Daw, Nathaniel D., additional
- Published
- 2023
- Full Text
- View/download PDF
42. Functional control of electrophysiological network architecture using direct neurostimulation in humans
- Author
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Ankit N. Khambhati, Ari E. Kahn, Julia Costantini, Youssef Ezzyat, Ethan A. Solomon, Robert E. Gross, Barbara C. Jobst, Sameer A. Sheth, Kareem A. Zaghloul, Gregory Worrell, Sarah Seger, Bradley C. Lega, Shennan Weiss, Michael R. Sperling, Richard Gorniak, Sandhitsu R. Das, Joel M. Stein, Daniel S. Rizzuto, Michael J. Kahana, Timothy H. Lucas, Kathryn A. Davis, Joseph I. Tracy, and Danielle S. Bassett
- Subjects
Neurostimulation ,Electrocorticography ,Structural controllability ,Reconfiguration ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Chronically implantable neurostimulation devices are becoming a clinically viable option for treating patients with neurological disease and psychiatric disorders. Neurostimulation offers the ability to probe and manipulate distributed networks of interacting brain areas in dysfunctional circuits. Here, we use tools from network control theory to examine the dynamic reconfiguration of functionally interacting neuronal ensembles during targeted neurostimulation of cortical and subcortical brain structures. By integrating multimodal intracranial recordings and diffusion-weighted imaging from patients with drug-resistant epilepsy, we test hypothesized structural and functional rules that predict altered patterns of synchronized local field potentials. We demonstrate the ability to predictably reconfigure functional interactions depending on stimulation strength and location. Stimulation of areas with structurally weak connections largely modulates the functional hubness of downstream areas and concurrently propels the brain towards more difficult-to-reach dynamical states. By using focal perturbations to bridge large-scale structure, function, and markers of behavior, our findings suggest that stimulation may be tuned to influence different scales of network interactions driving cognition. Brain stimulation devices capable of perturbing the physiological state of neural systems are rapidly gaining popularity for their potential to treat neurological and psychiatric disease. A root problem is that underlying dysfunction spans a large-scale network of brain regions, requiring the ability to control the complex interactions between multiple brain areas. Here, we use tools from network control theory to examine the dynamic reconfiguration of functionally interacting neuronal ensembles during targeted neurostimulation of cortical and subcortical brain structures. We demonstrate the ability to predictably reconfigure patterns of interactions between functional brain areas by modulating the strength and location of stimulation. Our findings have high significance for designing stimulation protocols capable of modulating distributed neural circuits in the human brain.
- Published
- 2019
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- View/download PDF
43. Fear-based niche shifts in neotropical birds
- Author
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Martínez, Ari E., Parra, Eliseo, Muellerklein, Oliver, and Vredenburg, Vance T.
- Published
- 2018
44. Looking for cortical patterns of successful motor imagery-based BCI learning.
- Author
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Marie-Constance Corsi, Mario Chavez, Denis Schwartz, Nathalie George, Laurent Hugueville, Ari E. Kahn, Sophie Dupont, Danielle S. Bassett, and Fabrizio de Vico Fallani
- Published
- 2019
- Full Text
- View/download PDF
45. Social information cascades influence the formation of mixed-species foraging aggregations of ant-following birds in the Neotropics
- Author
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Martínez, Ari E., Pollock, Henry S., Kelley, J. Patrick, and Tarwater, Corey E.
- Published
- 2018
- Full Text
- View/download PDF
46. Structural, geometric and genetic factors predict interregional brain connectivity patterns probed by electrocorticography
- Author
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Betzel, Richard F., Medaglia, John D., Kahn, Ari E., Soffer, Jonathan, Schonhaut, Daniel R., and Bassett, Danielle S.
- Published
- 2019
- Full Text
- View/download PDF
47. Is elevated urotensin II level a predictor for increased cardiovascular risk in subjects with acromegaly?
- Author
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Demirpence, M., Guler, A., Yilmaz, H., Sayin, A., Pekcevik, Y., Turkon, H., Colak, A., Ari, E. M., Aslanipour, B., Kocabas, G. U., and Calan, M.
- Published
- 2019
- Full Text
- View/download PDF
48. Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10
- Author
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Maeder, Morgan L., Stefanidakis, Michael, Wilson, Christopher J., Baral, Reshica, Barrera, Luis Alberto, Bounoutas, George S., Bumcrot, David, Chao, Hoson, Ciulla, Dawn M., DaSilva, Jennifer A., Dass, Abhishek, Dhanapal, Vidya, Fennell, Tim J., Friedland, Ari E., Giannoukos, Georgia, Gloskowski, Sebastian W., Glucksmann, Alexandra, Gotta, Gregory M., Jayaram, Hariharan, Haskett, Scott J., Hopkins, Bei, Horng, Joy E., Joshi, Shivangi, Marco, Eugenio, Mepani, Rina, Reyon, Deepak, Ta, Terence, Tabbaa, Diana G., Samuelsson, Steven J., Shen, Shen, Skor, Maxwell N., Stetkiewicz, Pam, Wang, Tongyao, Yudkoff, Clifford, Myer, Vic E., Albright, Charles F., and Jiang, Haiyan
- Published
- 2019
- Full Text
- View/download PDF
49. Elusive variants in autosomal recessive disease: how can we improve timely diagnosis?
- Author
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Ari E. Horton, Sebastian Lunke, Simon Sadedin, Andrew P. Fennell, and Zornitza Stark
- Subjects
Genetics ,Genetics (clinical) - Published
- 2023
- Full Text
- View/download PDF
50. Acute rheumatic fever and rheumatic heart disease in children and adolescents in Victoria, Australia
- Author
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Daniel E Lindholm, Ida J Whiteman, Jane Oliver, Michael M H Cheung, Sarah A Hope, Christian P Brizard, Ari E Horton, Bennett Sheridan, Myra Hardy, Joshua Osowicki, Andrew C Steer, and Daniel Engelman
- Subjects
Pediatrics, Perinatology and Child Health - Abstract
To describe the epidemiology and clinical profile of children and adolescents with acute rheumatic fever (ARF) and rheumatic heart disease (RHD) in Victoria, Australia.A retrospective audit was undertaken of children and adolescents with ARF and RHD attending the Royal Children's and Monash Children's Hospitals in Victoria, Australia between 2010 and 2019. Potential cases were identified by searching multiple sources for relevant ICD-10-AM codes and keywords, then reviewed manually. For confirmed cases, we collected data on patient demographics, clinical features, comorbidities and management.Of 179 participants included, there were 108 Victorian residents and 71 non-Victorian residents. 126 had at least one episode of ARF during the study period and 128 were diagnosed with RHD. In the Victorian resident group, the overall incidence of ARF was 0.8 per 100 000 5-14 year olds. This incidence was higher in Victorian Aboriginal and/or Torres Strait Islander (3.8 per 100 000) and Pacific Islander (32.1 per 100 000) sub-populations. Of 83 Victorian residents who had an ARF episode, 11 (13%) had a recurrence. Most Victorian residents with RHD had mixed aortic and mitral valve pathology (69.4%) and moderate to severe disease (61.9%). Most non-Victorian residents were Aboriginal and/or Torres Strait Islander people (80.3%) and were commonly transferred for tertiary or surgical management of RHD (83.1%).ARF and RHD continue to affect the health of significant numbers of children and adolescents living in Victoria, including severe and recurrent disease. Specialised services and a register-based control program may help to prevent complications and premature death.
- Published
- 2022
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