723 results on '"Arenicola"'
Search Results
2. Taxonomic reassessment of the Little pocket mouse, Perognathus longimembris (Rodentia, Heteromyidae) of southern California and northern Baja California.
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PATTON, JAMES L. and FISHER, ROBERT N.
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RODENTS ,MICE ,COASTS ,GEOGRAPHIC names ,QUINCE ,SUBSPECIES - Abstract
The Little pocket mouse (Perognathus longimembris) encompasses 15 to 16 currently recognized subspecies, six of which are restricted to southern California and adjacent northern Baja California. Using cranial geomorphometric shape parameters and dorsal color variables we delineate six regional groups of populations from this area that we recognize as valid, but these differ in name combination and geographic range from the current taxonomy. We resurrect two names from their current placement in synonymies, synonymize two currently recognized subspecies, and we reassign a third. Importantly, we restrict the U. S. Federally endangered Pacific pocket mouse (P. l. pacificus Mearns) to the vicinity of its type locality at the mouth of the Tijuana River in the southwestern corner of San Diego County and resurrect P. l. cantwelli von Bloeker for the other two population segments along the coast, those that span the northwestern corner of San Diego County and adjacent Orange County and that in coastal Los Angeles County. The name cantwelli would now apply to the only extant populations of the Pacific pocket mouse, a reassignment with obvious management implications. Our taxonomic decisions also reconfigure the ranges of other subspecies of conservation concern, notably P. l. bangsi Mearns and P. l. brevinasus Osgood. Para el ratón de abazones menor (Perognathus longimembris) se tienen reconocidas quince o dieciséis subespecies, de las cuales seis de ellas tienen una distribución restringida al sur de California y la parte colindante del norte de Baja California. Haciendo uso de parámetros geométricos de la forma craneal y variables en la coloración dorsal, delimitamos y reconocimos como válidos seis grupos regionales de poblaciones, los cuales difieren en el nombre y área geográfica de su actual clasificación taxonómica. Reincorporamos dos nombres de las actuales sinonímias, combinamos dos subespecies que se encuentran actualmente reconocidas y reasignamos una tercera. Es importante destacar que para el ratón de abazones menor (P. l. pacificus Mearns), que se encuentra en peligro de extinción a nivel federal de E.U.A., restringimos su distribución a la vecindad de su localidad tipo en la boca del Río Tijuana, localizada en la esquina suroeste de San Diego County. Asimismo, reincorporamos a la subesepcie P. l. cantwelli von Bloeker a los otros dos segmentos de la población a lo largo de la costa, abarcando la esquina noroeste de San Diego County, colindante con Orange County y la costa de Los Angeles County. El nombre cantwelli ahora se aplicaría a las únicas poblaciones del ratón de bolsillo del Pacífico, un reasginamiento con notorias impicaciones en su manejo. Nuestras decisiones taxonómicas también incluyen la reconfiguración en los rangos de otras subespecies que son preocupantes para la conservación, como lo son P. l. bangsi Mearns y P. l. brevinasus Osgood. [ABSTRACT FROM AUTHOR]
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- 2023
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3. Marine turf of an invasive alga expels lugworms from the lower shore.
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Reise, Karsten, Lackschewitz, Dagmar, and Wegner, K. Mathias
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ALGAE , *BENTHIC animals , *MARINE algae , *RHIZOIDS , *TURFGRASSES , *SEA level , *BIOTURBATION - Abstract
Bare sandy flats at and below low tide level of the Wadden Sea (eastern North Sea, European Atlantic) were observed in 2020 to have been invaded by an introduced grass-like alga, Vaucheria cf. velutina (Xanthophyceae). A dense algal turf accumulated and stabilized mud, where resident seniors of the lugworm Arenicola marina had reworked rippled sand. Algae and worms were incompatible. Initially, rising patches with algal turf alternated with bare pits where lugworms crowded. Their bioturbation inhibited young algae, while the felt of established algal rhizoids clogged feeding funnels of worm burrows. Eventually, a mosaic pattern of competitors gave way to a coherent algal turf without lugworms. Concomitantly, a rich small-sized benthic fauna took advantage of the novel algal turf. This exotic Vaucheria may have the potential for drastically altering the ecological web at the lower shore. [ABSTRACT FROM AUTHOR]
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- 2022
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4. Recovering wasted nutrients from shrimp farming through the combined culture of polychaetes and halophytes.
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Jerónimo, Daniel, Lillebø, Ana Isabel, Cremades, Javier, Cartaxana, Paulo, and Calado, Ricardo
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POLYCHAETA , *HALOPHYTES , *BIOMASS production , *WATER temperature , *ARENICOLA - Abstract
The bioremediation and biomass production of organic extractive organisms (polychaetes Arenicola marina, Hediste diversicolor and halophyte Salicornia ramosissima) was assessed in an integrated multi-trophic aquaculture (IMTA) framework. Culture trials were performed outdoors using the nutient rich effluent from a shrimp farm employing recirculated aquaculture systems. Similar bioremediation efficiencies were obtained in cultures using a single polyculture tank (1 T) or two trophic levels separated tanks (2 T; ≈ 0.3 and 0.6 m2 operational area, respectively), with a reduction of 74–87% for particulate organic matter (POM), 56–64% for dissolved inorganic nitrogen (DIN) and 60–65% for dissolved inorganic phosphorus (DIP). Hediste diversicolor adapted well to culture conditions, reaching densities up to 5.000 ind. m−2 (≈ 78–98 g m−2). Arenicola marina failed to cope with water temperature that exceeded the species thermal limits, displaying a survival < 10% (20 °C often pointed as the maximum thermal threshold for this species). Productivity of S. ramosissima with 1 T was about twice that obtained with 2 T (≈ 150–170 and ≈ 60–90 g FW m−2 edible aboveground biomass, respectively). The yellowish coloration of cultured plants was likely due to the chemical oxidation and rapid sand filtration pre-treatment applied to the brackish groundwater used in the aquaculture facility, that removed iron (and probably other essential elements). Overall, 1 T design combining H. diversicolor and S. ramosissima displayed the best bioremediation performance and biomass production, while also allowing reducing in half the operational area required to implement this IMTA framework. [ABSTRACT FROM AUTHOR]
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- 2021
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5. The influence of invertebrate faecal material on compositional heterogeneity, diagenesis and trace metal distribution in the Ogeechee River estuary, Georgia, USA.
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Swaren, Logan, Hao, Weiduo, Gunten, Konstantin, Wilson, Sasha, Alessi, Daniel S., Planavsky, Noah, Tarhan, Lidya, Gingras, Murray K., Konhauser, Kurt O., and Tosca, Nicholas
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TRACE metals , *DIAGENESIS , *CLAY minerals , *ESTUARINE sediments , *ESTUARIES , *POTENTIOMETRY - Abstract
Bioturbating organisms contribute significantly to elemental cycling in sediments through burrowing, grazing, organic matter and altering porewater chemical conditions. In the process, organisms are known to produce copious amounts of faecal material at high rates, sometimes in excess of 1 000 000 kg day−1 in a 1 km2 area. Material from three organisms (Arenicola marina, Callichirus major and Diopatra cuprea) was collected from two locations, Raccoon Key and Steamboat Pass, in the Ogeechee River estuary, Georgia, USA, to explore how faecal production affects organic carbon cycling and clay mineralogies. The individual organisms' feeding strategies played a strong role in the extent to which they concentrate organic matter and lead to the formation of clay minerals. The faecal material of filter feeding Diopatra cuprea and selective deposit feeding Callichirus major contains up 45.8% and 47.3% kaolinite, respectively, while kaolinite is below detection limits in the surrounding matrix. By contrast, the non‐selective deposit‐feeder Arenicola marina does not appear to form or concentrate clay minerals. Callichirus major increases organic carbon contents at Raccoon Key by 68‐fold and Diopatra cuprea increases total organic carbon (w/w%) by 119‐fold and 32‐fold at Raccoon Key and Steamboat Pass, respectively. Arenicola marina, in contrast, does not noticeably concentrate organic matter in its faecal material, most likely as a consequence of non‐selective deposit‐feeding. Potentiometric titration data was used to explore surface reactivity and metal sorption. Diopatra cuprea and Callichirus major faecal material has strong metal binding affinities relative to the surrounding matrix, thereby increasing the potential for trace metals to be sequestered into the sedimentary record. The widespread occurrence of invertebrate faecal material enriched in clay minerals and organic matter likely has a significant influence on organic matter, grain size and trace metal distribution in estuarine sediments. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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6. Bait collecting by subsistence and recreational fishers in Knysna Estuary may impact management and conservation.
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Simon, C, du Toit, AN, Smith, MKS, Claassens, L, Smith, F, and Smith, P
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POLYCHAETA , *FISHING baits , *FISHERS , *ESTUARIES , *SPATIAL variation - Abstract
To facilitate development of tailored management strategies for bait species within Knysna Estuary (South Africa), demand for bait, harvesting activity and perceptions around conservation among recreational and subsistence bait fishers were investigated. In 2015 and 2016, bait collectors were interviewed (n = 84) and observed (n = 167) during low tides at six sites during peak and off-peak holiday periods. Significant associations among subsistence and recreational fishers and their favoured bait species, collecting spots and method, frequency of collection, views on regulations and desired daily limit for mudprawns suggest differences that may warrant different management strategies. Furthermore, observed methods and duration of bait collecting differed according to site, suggesting spatial variation in baiting pressures. Subsistence fishers potentially collect more mudprawns more frequently than do recreational fishers and consequently have a greater impact on mudprawn populations. By contrast, recreational fishers collect more polychaete worms, but because they are mainly active during holidays, their impact on these species may be localised and not yet critical. Most subsistence fishers would like increased daily bag limits, to sell bait and would welcome a rotational zonation scheme to replace the current permanent exclusion zone. The merits and disadvantages of these management options and suggestions are discussed. [ABSTRACT FROM AUTHOR]
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- 2019
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7. Comparative Assessment of the Bioremediation Potential of Polychaetes (Lug worm-Arenicola marina sp and Syllidae Worm-Syllis prolifera sp) in Aquaculture Pond Sediment
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E. E. Oyo-Ita, U. A. Ugbaja, C. Oge, B. B. Asuquo, Orok E. Oyo-Ita, and Inyang O. Oyo-Ita
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chemistry.chemical_classification ,Polychaete ,biology ,business.industry ,Sediment ,Ocean Engineering ,Syllis prolifera ,biology.organism_classification ,Bioremediation ,chemistry ,Aquaculture ,Botany ,Arenicola ,Organic matter ,business - Abstract
Polychaetes play an important role in nutrient cycling and remediation of coastal ecosystems. Large quantities of organic matter that could lead to pollution of pond and coastal waters are generated by aquaculture waste. To assess the remediation prospects of Arenicola marina and Syllis prolifera species, laboratory sediment microcosm experiments were conducted where large size Arenicola marina and Syllis prolifera were introduced to sediment in microcosm A, large size Arenicola marina to sediment in microcosm B, large sized Syllis prolifera to sediment in microcosm C and no polychaetes to sediment in microcosm D. Microcosm A′, B′ and C′ as replicates for small size polychaetes were also set up, respectively. After 30 days, microcosm A, B and C had significant decrease in organic carbon levels with microcosm B being the highest (Total organic carbon (TOC); 27.87%; p< 0.05). Both large and small polychaetes promoted significant decrease in sulphur (S) content (mean=62.76±0.21; 62.81±0.21%) and iron(Fe) (mean=49.43±1.47; 36.28±5.90%) respectively. Increase in pH by 31.15±0.13% was found in the presence of large size polychaetes, most likely associated with the burrowing process involving oxidation of Fe to Fe2O3. Large size polychaetes had better survival (mean=92±0.82%) than their small size counterpart (mean=55±4.08%). The extent of biodegradation B>A>C>D observed revealed that large size Arenicola marina was a better bioremediator of organic matter (OM), Fe and S enriched aquaculture pond sediment, probably due to its biological characteristics, well suited for the aquaculture than other species of sea worms that produce free swimming larvae. Therefore, large size Arenicola marina significantly improved sediment quality as well as increased its pH without compromising their survival. As the search for a better bioremediator of organically enriched sediment continues, our result revealed large size Arenicola marina as a more promising candidate compared to other species documented elsewhere in the world. Hence, rearing of large size Arenicola marina sp is recommended as their feeding habits are well suited for aquaculture.
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- 2021
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8. A new Mexican species of Paraxenylla (Collembola: Hypogastruridae) from marine littoral sand of Quintana Roo, Mexico.
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Palacios-Vargas, José G. and Vázquez, Magdalena
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COLLEMBOLA ,SPECIES ,SAND ,TEETH ,TEQUILA ,TUBES ,SOIL invertebrates - Abstract
Copyright of Revista Mexicana de Biodiversidad is the property of Universidad Nacional Autonoma de Mexico, Instituto de Biologia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2018
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9. NOTES ON TWO COPRINOID FUNGI (BASIDIOMYCOTA, AGARICALES) FROM THE BRAZILIAN SEMIARID REGION.
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Gomes, A. R. P. and Wartchow, F.
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BASIDIOMYCETES , *ARENICOLA , *PLANT phylogeny , *ARID regions ecology , *TAXONOMY - Abstract
Coprinellus phaeoxanthus A.R.Gomes & Wartchow is described as a new species and is characterised by cordiform basidiospores similar to those of the recently described Coprinellus arenicola. However, it differs in the presence of voluminous pleurocystidia in the velar elements, which are shorter than in Coprinellus arenicola , and in the lack of clamp connections. In addition, exsiccatae of a Brazilian collection identified as ' Coprinus xerophilus ' are analysed, and because of the star-shaped velar patch on the pileus and the non-volvate stipe base, it is considered to be the same as Coprinus calyptratus , representing a new record from South America. [ABSTRACT FROM AUTHOR]
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- 2018
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10. Propagation of the northern Gulf of Mexico coastal dune endemic Crocanthemum arenicola (coastalsand frostweed)
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Mack Thetford, Deborah L. Miller, Gabriel Campbell-Martínez, Barbara Cory, and Anna Dicks
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Oceanography ,Geography ,biology ,Arenicola ,biology.organism_classification - Published
- 2021
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11. Proximate composition and mineral contents in the body wall of two species of sea cucumber from Oman Sea.
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Barzkar, Noora, Attaran Fariman, Gilan, and Taheri, Ali
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SEA cucumbers ,MARINE animals ,ATOMIC absorption spectroscopy ,ARENICOLA - Abstract
The proximate composition and mineral contents of Stichopus horrens and Holothuria arenicola from Chabahar Bay were analyzed and investigated. During the present study, we aimed to demonstrate the nutritive value. The approximate percent composition of moisture, protein, fat, and ash were 92.8, 3.47, 0.4, and 3.33% in S. horrens and 93, 4.4, 0.6, and 2% in H. arenicola, respectively. Atomic absorption spectrophotometry of the ashes indicated the body wall of two species of sea cucumbers contained higher amounts of both macro minerals (92.5 mg/100 g Mg in S. horrens and 115 mg/100 g Mg in H. arenicola; 106.25 mg/100 g Ca in S. horrens and 83.25 mg/100 g Ca in H. arenicola) and trace elements (521.781 mg/100 g Fe in S. horrens; 60.354 mg/100 g Fe in H. arenicola, and 0.096 mg/100 g Zn in S. horrens; 0.04 mg/100 g Zn in H. arenicola). For both species, there were high content of protein and essential mineral. Also, they have low content of fat in the body wall of two species in the experiment. [ABSTRACT FROM AUTHOR]
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- 2017
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12. Morphological and molecular evolution and their consequences for conservation and taxonomy in the Le Conte's thrasher Toxostoma lecontei.
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Vázquez‐Miranda, Hernán, Griffin, Josie A., Sheppard, Jay M., Herman, Jordan M., Rojas‐Soto, Octavio, and Zink, Robert M.
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BIRDS , *TAXONOMY , *NUCLEOTIDE sequencing , *MORPHOMETRICS , *ARENICOLA - Abstract
We evaluated geographic variation and subspecific taxonomy in the Le Conte's thrasher Toxostoma lecontei by analyzing DNA sequences from 16 nuclear loci, one mitochondrial DNA locus, and four study skin characters, and compared these data sets with previously published data on plumage coloration and different mtDNA genes. Morphological support for the southernmost taxon, T. l. arenicola, is relatively weak: multivariate analyses of morphometrics or back coloration do not provide diagnostic support, although one color character differs statistically. However, combined DNA analyses indicate that T. l. arenicola is diagnosable and reciprocally monophyletic, diverging from T. l. lecontei at least 140 000 yr ago. Little to no past introgression across a very short geographic distance despite the long period of isolation is strong evidence of independently evolving taxa. We suggest that the lack of morphological divergence in traits related to niche use has prevented the two taxa from invading each other's range. Despite relatively weak morphological differences we suggest that these two deeply divergent lineages merit species status, and we suggest Vizcaíno thrasher for the common name corresponding to T. l. arenicola. The population size of T. l. arenicola is small and the taxon is in need of preservation attention. [ABSTRACT FROM AUTHOR]
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- 2017
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13. The influence of invertebrate faecal material on compositional heterogeneity, diagenesis and trace metal distribution in the Ogeechee River estuary, Georgia, USA
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Noah J. Planavsky, Weiduo Hao, Kurt O. Konhauser, Konstantin von Gunten, Siobhan A. Wilson, Daniel S. Alessi, Murray K. Gingras, Logan Swaren, and Lidya G. Tarhan
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chemistry.chemical_classification ,geography ,geography.geographical_feature_category ,food.ingredient ,biology ,Stratigraphy ,Geology ,Estuary ,biology.organism_classification ,Diagenesis ,Callichirus ,Diopatra ,food ,Oceanography ,chemistry ,General Earth and Planetary Sciences ,Arenicola ,Organic matter ,Trace metal ,General Environmental Science ,Invertebrate - Published
- 2020
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14. Comparison of Electronic Length Frequency Analysis (ELEFAN) for Estimation of Growth Parameters for Lollyfish, Holothuria (Holothuria) atra and Sand Sea Cucumber, Holothuria (Thymiosycia) arenicola (Holothuroidea: Echinodermata) in the North Arabian Sea, Pakistan
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Qadeer Mohammad Ali, Quratulan Ahmed, and Sabri Bilgin
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media_common.quotation_subject ,Monsoon ,arabian sea ,lcsh:Aquaculture. Fisheries. Angling ,biological stress ,Sea cucumber ,Animal science ,Aquaculture ,Denizcilik ,lcsh:VM1-989 ,Marine Science ,Growth rate ,lcsh:Naval Science ,media_common ,lcsh:SH1-691 ,Arabian Sea,Biological Stress,Seasonal Growth,Sea Cucumber ,lcsh:V ,biology ,business.industry ,lcsh:Naval architecture. Shipbuilding. Marine engineering ,biology.organism_classification ,seasonal growth ,Holothuria atra ,General Earth and Planetary Sciences ,Arenicola ,Reproduction ,business ,Holothuria ,sea cucumber - Abstract
To estimate the growth parameters, the non-seasonal von Bertalanffy and Hoenig seasonal von Bertalanffy models were fitted to the length frequency data of Holothuria atra and H. arenicola obtained from coastal areas of Karachi in the northern Arabian Sea, Pakistan between January and December 2014. The Hoenig seasonal von Bertalanffy growth parameters were estimated as L∞=36.1 cm total length (TL), K=0.75 year-1 for H. atra and as L∞=34.9 cm TL, K=0.70 year-1 for H. arenicola. H. atra individuals reached 73.9% of their maximum total length at the one year old. For H. arenicola it was calculated as 72.7%. Monthly mean growth rate of H. atra at the same ages was calculated higher than H. arenicola. The seasonal oscillation in growth rate for H. atra (C=0.50) was larger than it was for H. arenicola (C=0.37). The time of the year when the growth is slowest corresponded to the middle of April (WP=0.30) in H. atra and at the beginning of August (WP=0.60) in H. arenicola may be the result of the extended both reproduction and poor nutrition periods due to monsoonal effects on the marine environment. The relatively high growth rates (K>0.7 year-1) of these two species may have important implications for high survival rate, particularly in environmental condition where cause biological stress and marine confusion but may also increase their potential as a candidate species for aquaculture.
- Published
- 2020
15. Acrophiarin (antibiotic <scp>S31794</scp> /F‐1) from Penicillium arenicola shares biosynthetic features with both Aspergillus ‐ and Leotiomycete ‐type echinocandins
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Philipp Wiemann, Bruno Perlatti, Jens Christian Frisvad, Zhiqiang An, Nan Lan, Daniel J. Kvitek, Colin J. B. Harvey, and Gerald F. Bills
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Genetics ,0303 health sciences ,biology ,Echinocandin ,030306 microbiology ,bacterial infections and mycoses ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Echinocandin B ,Horizontal gene transfer ,Gene cluster ,polycyclic compounds ,medicine ,Arenicola ,Penicillium arenicola ,Echinocandins ,Gene ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,medicine.drug - Abstract
The antifungal echinocandin lipopeptide, acrophiarin, was circumscribed in a patent in 1979. We confirmed that the producing strain NRRL 8095 is Penicillium arenicola and other strains of P. arenicola produced acrophiarin and acrophiarin analogues. Genome sequencing of NRRL 8095 identified the acrophiarin gene cluster. Penicillium arenicola and echinocandin-producing Aspergillus species belong to the family Aspergillaceae of the Eurotiomycetes, but several features of acrophiarin and its gene cluster suggest a closer relationship with echinocandins from Leotiomycete fungi. These features include hydroxy-glutamine in the peptide core instead of a serine or threonine residue, the inclusion of a non-heme iron, α-ketoglutarate-dependent oxygenase for hydroxylation of the C3 of the glutamine, and a thioesterase. In addition, P. arenicola bears similarity to Leotiomycete echinocandin-producing species because it exhibits self-resistance to exogenous echinocandins. Phylogenetic analysis of the genes of the echinocandin biosynthetic family indicated that most of the predicted proteins of acrophiarin gene cluster exhibited higher similarity to the predicted proteins of the pneumocandin gene cluster of the Leotiomycete Glarea lozoyensis than to those of the echinocandin B gene cluster from A. pachycristatus. The fellutamide gene cluster and related gene clusters are recognized as relatives of the echinocandins. Inclusion of the acrophiarin gene cluster into a comprehensive phylogenetic analysis of echinocandin gene clusters indicated the divergent evolutionary lineages of echinocandin gene clusters are descendants from a common ancestral progenitor. The minimal 10-gene cluster may have undergone multiple gene acquisitions or losses and possibly horizontal gene transfer after the ancestral separation of the two lineages.
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- 2020
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16. Specialized Metabolite-Mediated Predation Defense in the Marine Actinobacterium Salinispora
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Chambers C. Hughes, Robert N. Tuttle, Paul R. Jensen, Gabriel Castro-Falcón, Greg W. Rouse, and Rudi, Knut
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Polychaete ,Annelid ,Ecology ,biology ,Obligate ,Zoology ,Micromonosporaceae ,biology.organism_classification ,Microbiology ,Applied Microbiology and Biotechnology ,Predation ,Actinobacteria ,chemical defense ,Habitat ,Predatory Behavior ,Animals ,Arenicola ,predation ,Caenorhabditis elegans ,Ecosystem ,Salinispora ,Food Science ,Biotechnology ,Invertebrate - Abstract
The obligate marine actinobacterial genus Salinispora has become a model organism for natural product discovery, yet little is known about the ecological functions of the compounds produced by this taxon. The aims of this study were to assess the effects of live cultures and culture extracts from two Salinispora species on invertebrate predators. In choice-based feeding experiments using the bacterivorous nematode Caenorhabditis elegans, live cultures of both Salinispora species were less preferred than Escherichia coli. When given a choice between the two species, C. elegans preferred S. areniolca over S. tropica. Culture extracts from S. tropica deterred C. elegans, while those from S. arenicola did not, suggesting that compounds produced by S. tropica account for the feeding deterrence. Bioactivity-guided isolation linked compounds in the lomaiviticin series to the deterrent activity. Additional assays using the marine polychaete Ophryotrocha siberti and marine nematodes further support the deterrent activity of S. tropica against potential predators. These results provide evidence that Salinispora natural products function as a defense against predation and that the strategies of predation defense differ between closely related species. IMPORTANCE Bacteria inhabiting marine sediments are subject to predation by bacterivorous eukaryotes. Here, we test the hypothesis that sediment-derived bacteria in the genus Salinispora produce biologically active natural products that function as a defense against predation. The results reveal that cultures and culture extracts of S. tropica deter feeding by Caenorhabditis elegans and negatively affect the habitat preference of a marine annelid (Ophryotrocha siberti). These activities were linked to the lomaiviticins, a series of cytotoxic compounds produced by S. tropica. Microbial natural products that function as a defense against predation represent a poorly understood trait that can influence community structure in marine sediments.
- Published
- 2022
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17. Impact of mechanical Arenicola dredging on the benthic fauna communities: assessed by a morphological and molecular approach
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Klunder, L., van Bleijswijk, J.D.L., Kleine Schaars, L., van der Veer, H.W., Luttikhuizen, P.C., Klunder, L., van Bleijswijk, J.D.L., Kleine Schaars, L., van der Veer, H.W., and Luttikhuizen, P.C.
- Abstract
Lugworm Arenicola spp. dredging affects the intertidal benthic community in the Dutch Wadden Sea. Previous studies have found contradicting results regarding the recovery rates of targeted and non-targeted macrozoobenthic species, and meiobenthic communities have been neglected in these studies. The current study explores the short-term effects of dredging on both the macrofaunal and the meiofaunal communities using both a morphological and molecular approach. Benthic samples were collected right before and regularly after dredging for up to 1.5 yr at both control and fished transects. Significant differences between the control and fished transects were found by morphological and molecular approaches. Ordination analysis suggests distinct community compositions between control and fished transects in the first months after dredging. Opportunistic species with short life cycles, typically more than 1 generation yr-1, thrived more in the fished transects during the spring/summer season compared to these species in the control transects in the same season, whereas recovery for long-lived species was slow. Both approaches showed similar results; however, compared to the morphological approach, the molecular approach was more sensitive to the effects due to a larger set of benthic taxa.
- Published
- 2021
18. A therapeutic oxygen carrier isolated from Arenicola marina decreases amanitin-induced hepatotoxicity
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Franck Zal, Catherine Ribault, Brendan Le Daré, Vincent Lagente, Eric Delpy, Thomas Gicquel, Pierre-Jean Ferron, Nessrine Bellamri, Nutrition, Métabolismes et Cancer (NuMeCan), Université de Rennes (UR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), CHU Pontchaillou [Rennes], HEMARINA SA, This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors., Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), and Jonchère, Laurent
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endocrine system ,Amanitins ,animal structures ,[SDV]Life Sciences [q-bio] ,chemistry.chemical_element ,Toxicology ,Oxygen ,Marine worm ,03 medical and health sciences ,Hemoglobins ,Extracellular ,medicine ,polycyclic compounds ,Humans ,Hepatocyte ,Oxygen carrier ,030304 developmental biology ,Amanitin ,0303 health sciences ,biology ,Bicyclic molecule ,030302 biochemistry & molecular biology ,Hepatotoxicity ,biology.organism_classification ,3. Good health ,[SDV] Life Sciences [q-bio] ,medicine.anatomical_structure ,chemistry ,Biochemistry ,Arenicola ,Hemoglobin ,Chemical and Drug Induced Liver Injury ,M101 - Abstract
International audience; The amanitins (namely α- and β-amanitin) contained in certain mushrooms are bicyclic octapeptides that, when ingested, are responsible for potentially lethal hepatotoxicity. M101 is an extracellular hemoglobin extracted from the marine worm Arenicola marina. It has intrinsic Cu/Zn-SOD-like activity and is currently used as an oxygen carrier in organ preservation solutions. Our present results suggest that M101 might be effective in reducing amanitin-induced hepatotoxicity and may have potential for therapeutic development.
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- 2021
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19. Marinomonas flavescens sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica
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Zemin Fang, Yanwu Zhai, Yanfeng Zhang, Wei Fang, Xiaoyan Han, Yazhong Xiao, and Miaomiao Hu
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0106 biological sciences ,0301 basic medicine ,Marinomonas ,biology ,Phylogenetic tree ,Strain (chemistry) ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,03 medical and health sciences ,Marinomonas arenicola ,030104 developmental biology ,Botany ,Arenicola ,Seawater ,Ecology, Evolution, Behavior and Systematics ,Bacteria - Abstract
A Gram-negative bacterium, namely strain ANRC-JHZ47T, was isolated from a seawater sample collected at Biological Bay, Fildes Peninsula, Antarctica. Cells of strain ANRC-JHZ47T were rod-shaped and motile by a single polar flagellum. Strain ANRC-JHZ47T was aerobic, oxidase-negative, and catalase-positive. The strain grew at 4–37 °C (optimum, 25 °C), pH at 3.5–10.0 (optimum, pH 5.5) and in NaCl at 1–7.0 % (w/v; optimum, 2–3 %). Strain ANRC-JHZ47T used Q-8 as the predominant respiratory quinone. Its predominant fatty acids were C16 : 0 (21.9 %), C12 : 0 (12.6 %), C19 : 0cyclo ω8c (12.4 %), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c; 13.1 %), C10 : 0 3-OH (11.3 %) and summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c; 6.0 %). Its major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, one unidentified aminolipid and five unknown polar lipids. The DNA G+C content was 42.6 mol%. Strain ANRC-JHZ47T showed the highest 16S rRNA gene sequence similarity to Marinomonas arenicola KMM 3893T (97.9 %), followed by Marinomonas primoryensis KMM 3633T (97.6 %), Marinomonas profundimaris D104T (97.2 %) and Marinomonas pollencensis IVIA-Po-185T (97.0 %). Furthermore, the average nucleotide identity values between strain ANRC-JHZ47T and M. arenicola KMM 3893T, M. primoryensis KMM 3633T and M. profundimaris D104T were 79.8, 74.0, and 74.1 %, respectively. The in silico DNA–DNA hybridization values between them were 22.5±2.5, 20.4±2.3 and 19.9±2.3 %, respectively. Based on the results of phenotypic and phylogenetic analyses, strain ANRC-JHZ47T is considered to represent a novel species of the genus Marinomonas , for which the name Marinomonas flavescens sp. nov. is proposed. The type strain is ANRC-JHZ47T (=MCCC 1K03604T=KCTC 72113T).
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- 2019
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20. Arenicola wormkokers op de Hors, Texel
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Gerhard C. Cadée and Gerhard C. Cadée
- Abstract
Layers with empty vertical tubes were eroded on a tidal flat at the southern tip of the Island of Texel in the Marsdiep area of the Wadden Sea. They were most probably the upper part of the tail shafts of the lugworm Arenicola marina. Linke (1939) gave already pictures of such a tailshaft on a tidal flat in the Jadebusen protruding because the sand around was eroded. If one wants to give an ichnospecies name to these structures, the most obvious is Arenicolites, The lugworm Arenicola was the name giver of U-shaped trace fossils found in many deposits since the Precambrian Ediacaran period. However, certainly Arenicolites traces may be produced by many different organisms.
- Published
- 2020
21. Description of Longidorella (Saevadorella) caspica n. sp. (Dorylaimida: Nordiidae) from north Iran
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Ebrahim Pourjam, Mohammad Reza Atighi, Majid Pedram, and Fariba Heydari
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Morphology ,biology ,Phylogenetic tree ,Zoology ,Dorylaimida ,Molecular ,biology.organism_classification ,New species ,28S rDNA D2-D3 ,Sponge spicule ,lcsh:Biology (General) ,Genus ,Phylogenetics ,Arenicola ,Taxonomy (biology) ,Subgenus ,lcsh:QH301-705.5 ,Phylogeny ,Taxonomy - Abstract
This contribution provides the morphological and molecular identification of a new species of the genus Longidorella (Saevadorella). L. (S.) caspica n. sp., was recovered from the rhizospheric soil of grasses in Mazandaran province in the seashore of the Caspian Sea. It is characterized by females with a length of 788 to 874 μm and a cephalic region with prominent papillae; and separated from the rest of the body by a remarkable constriction, an odontostyle of 32 to 33 μm, vulva at 52.5 to 59.0%, and a tail of 33 to 38 μm with a rounded tip. Males have 32 to 35 μm long spicules of dorylaimoid form and five to seven ventral supplements ending at 48 to 55 μm distance from cloacal pair. The new species was morphologically compared with seven nominal species viz. L. (S.) arenicola, L. (S.) cuspidata, L. (S.) magna, L. (S.) perplexa, L. (S.) saadi, L. (S.) saevae, and L. (S.) tharensis. It was further compared with similar species under the subgenus Longidorella (Enchodorella) viz. L. (E.) deliblatica and L. (E.) murithi. Besides morphological studies, molecular phylogenetic studies using partial sequences of D2 to D3 expansion fragments of 28S rDNA were performed for the new species and its phylogenetic relationships with other species and genera were discussed.
- Published
- 2021
22. Impact of mechanical Arenicola dredging on the benthic fauna communities: assessed by a morphological and molecular approach
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H.W. van der Veer, Jdl van Bleijswijk, L. Klunder, Pieternella C. Luttikhuizen, and L. Kleine Schaars
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Ecology ,biology ,Fauna ,Intertidal zone ,Aquatic Science ,biology.organism_classification ,Dredging ,Geography ,Benthic zone ,Arenicola ,18s rdna ,Ecology, Evolution, Behavior and Systematics - Abstract
Lugworm Arenicola spp. dredging affects the intertidal benthic community in the Dutch Wadden Sea. Previous studies have found contradicting results regarding the recovery rates of targeted and non-targeted macrozoobenthic species, and meiobenthic communities have been neglected in these studies. The current study explores the short-term effects of dredging on both the macrofaunal and the meiofaunal communities using both a morphological and molecular approach. Benthic samples were collected right before and regularly after dredging for up to 1.5 yr at both control and fished transects. Significant differences between the control and fished transects were found by morphological and molecular approaches. Ordination analysis suggests distinct community compositions between control and fished transects in the first months after dredging. Opportunistic species with short life cycles, typically more than 1 generation yr-1, thrived more in the fished transects during the spring/summer season compared to these species in the control transects in the same season, whereas recovery for long-lived species was slow. Both approaches showed similar results; however, compared to the morphological approach, the molecular approach was more sensitive to the effects due to a larger set of benthic taxa.
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- 2021
23. Predator Chemical Cue Effects on the Diel Feeding Behaviour of Marine Protists
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Anna Arias, Albert Calbet, Erik Selander, Enric Saiz, Ministerio de Economía y Competitividad (España), Agencia Estatal de Investigación (España), and Ministerio de Ciencia e Innovación (España)
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0301 basic medicine ,Copepodamide ,Calanus finmarchicus ,030106 microbiology ,Soil Science ,Zoology ,Copepods ,Predation ,03 medical and health sciences ,Feeding rhythms ,Animals ,Ciliophora ,Diel vertical migration ,Ecology, Evolution, Behavior and Systematics ,Ciliate ,Ciliates ,Ecology ,biology ,Dinoflagellate ,fungi ,Feeding Behavior ,biology.organism_classification ,Oxyrrhis marina ,Grazing ,030104 developmental biology ,Predatory Behavior ,Microzooplankton ,Dinoflagellida ,Arenicola ,Cues ,Copepod - Abstract
9 pages, 4 figures, 3 tables, supplementary information https://doi.org/10.1007/s00248-020-01665-9, We have assessed the effect of copepod chemical cues on the diel feeding rhythms of heterotrophic and mixotrophic marine protists. All phagotrophic protists studied exhibited relatively high diurnal feeding rates. The magnitude of the diel feeding rhythm, expressed as the quotient of day and night ingestion rates, was inversely related to the time that phagotrophic protists were maintained in the laboratory in an environment without predators. In the case of the recently isolated ciliate Strombidium arenicola, the rhythm was lost after a few months. When challenged with chemical alarm signals (copepodamides) from the copepod Calanus finmarchicus at realistic concentrations (0.6–6 pM), S. arenicola partially re-established diurnal feeding. Conversely, the amplitude of the diel feeding rhythm for the ciliate Mesodinium rubrum was not affected by copepodamides, although the 24-h integrated food intake increased by approximately 23%. For the dinoflagellates Gyrodinium dominans and Karlodinium armiger, copepodamides significantly reduced the amplitude of their diel feeding rhythms; significant positive effects on total daily ingestion were only observed in G. dominans. Finally, the dinoflagellate Oxyrrhis marina, isolated >20 years ago, showed inconsistent responses to copepodamides, except for an average 6% increase in its total ingestion over 24 h. Our results demonstrate that the predation risk by copepods affects the diel feeding rhythm of marine protists and suggests a species-specific response to predation threats, This work was supported by the FERMI project (CGL2014-59227-R; MINECO/AEI/FEDER, UE) and is a contribution of the Marine Zooplankton Ecology Group (2017 SGR 87). AA was funded with an FPI fellowship (BES-2015-074092) from the MICINN of Spain, With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)
- Published
- 2021
24. The lugworm fishery in Northumberland, UK: Bait digging impacts in a marine protected area.
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Tinlin-Mackenzie, Ashleigh, Rowland, Ben W., Delany, Jane, Scott, Catherine L., and Fitzsimmons, Clare
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- *
MARINE parks & reserves , *BYCATCHES , *FISHERIES , *FISHING baits , *PROTECTED areas - Abstract
Robust evidence of fisheries impacts is required to support evidence-based management. Intertidal fisheries have received considerably less attention to date compared to inshore and offshore counterparts. The need for additional intertidal data and assessment has been identified for protected sites under UK legislation (i.e., the Department for Environment, Food & Rural Affairs 'revised approach to commercial fisheries'). Digging for Arenicola spp. is carried out both recreationally and commercially within the Berwickshire and North Northumberland Special Area of Conservation (SAC), a Marine Protected Area (MPA) along the northeast coast of England. This study investigated the impacts of such activities, comparing sites across a gradient of fishing pressure (none, low, high), in combination with small scale experimental disturbances (simulated digging and lugworm exclusion) at an unfished site. Fishing pressure gradient studies indicated no long-term impacts on the target species, as no significant differences were detected between sites. This suggests that current collection intensities are not reducing or altering targeted lugworm populations. However, finer scale experimental work revealed significant negative impacts upon the wider sediment communities in the short term, which was mirrored in the longer-term, fisheries scale gradient site comparisons. Reductions in total infaunal abundance and taxonomic richness and altered community structures were observed. Recovery within experimental plots was rapid (within a few months), suggesting that under similar conditions, sites have the potential for substantial recovery if disturbance is ceased. The observed alterations to infaunal communities could have ecosystem wide implications, with altered functional diversity and ecosystem processes that are not compatible with the conservation objectives or designations of the study site. Additional management measures such as further closed areas or seasonal closures to bait digging would allow for recovery and restoring sites. • Investigating impacts of bait digging on the target species and associated infauna. • Comparative and experimental studies combined. • Impacts on lugworms were not discernible against natural background variability. • Negative impacts observed on the infaunal community (abundance, richness, community). [ABSTRACT FROM AUTHOR]
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- 2022
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25. NOMENCLATURAL SURVEY OF THE GENUS AMARANTHUS (AMARANTHACEAE). 11. DIOECIOUS AMARANTHUS SPECIES BELONGING TO THE SECT. SAUERANTHUS
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Duilio Iamonico
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biology ,México ,synonymy ,sinonimia ,tipificación ,Plant Science ,Amaranthaceae ,Myrianthus ,Acnida ,biology.organism_classification ,Sect ,Taxon ,Estados Unidos de América ,Genus ,Botany ,Arenicola ,U.S.A ,typification ,Mexico - Abstract
Resumen Iamonico, D. 2020. Estudio de nomenclatura del género Amaranthus (Amaranthaceae). 11. Especies dioicas de Amaranthus pertenecientes a la sección Saueranthus. Darwiniana, nueva serie 8(2): 567-575. Se lleva a cabo un estudio nomenclatural sobre los nombres de las especies dioicas de Amaranthus, pertenecientes a la sección Saueranthus (subgénero Acnida). Todos los nombres estudiados están válidamente publicados pero necesitan aclaraciones nomenclaturales. Se designan lectotipos para A. greggii var. muelleri (NY). Se indica la existencia de holotipos para A. ambigens, A. annectens, A. arenicola, A. myrianthus y A. watsonii (depositados en US, BM, GH y US). Se localizan isotipos para A. ambigens (un espécimen en NY), A. myrianthus (cinco especímenes en GH, M, MO, RM y US) y A. arenicola (tres especímenes en KSC, MO y US), mientras que para A. watsonii fueron localizados dos isotipos en US. Se establece una nueva sinonimia: A. arenicola = A. myrianthus, proponiéndose que el segundo nombre tenga prioridad nomenclatural sobre el primero. Con base en observaciones taxonómicas preliminares, se reconocen dos variedades de A. greggii, var. greggii y var. muelleri, que difieren entre sí en la relación entre la longitud de los tépalos y del fruto (aproximadamente 2/3 en la var. muelleri vs. aproximadamente 1 en la var. greggii).
- Published
- 2020
26. Investigating down-shore migration effects on individual growth and reproduction of the ecosystem engineer Arenicola marina
- Author
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Théo Lancelot, Sylvie M. Gaudron, Gwendoline Duong, Lola De Cubber, Sébastien Lefebvre, Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG), Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Nord]), Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), and Centre National de la Recherche Scientifique (CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Institut national des sciences de l'Univers (INSU - CNRS)
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0106 biological sciences ,Shore ,education.field_of_study ,geography ,geography.geographical_feature_category ,biology ,Ecology ,010604 marine biology & hydrobiology ,Dynamic energy budget ,Population ,Hypoxia (environmental) ,Aquatic Science ,Intertidal ecology ,Oceanography ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Ecosystem engineer ,Lugworm ,[SDU]Sciences of the Universe [physics] ,Arenicola ,Environmental science ,14. Life underwater ,education ,Ecology, Evolution, Behavior and Systematics - Abstract
Arenicola marina (Annelida Polychaeta) is a harvested ecosystem engineer inhabiting galleries within soft-sediment foreshores from the Mediterranean to the Arctic. It displays a typical distribution pattern on most foreshores, with the juveniles inhabiting the mediolittoral shore and migrating to the infralittoral shore while growing. In this study, we have characterized the shore migrations of a temperate population of A. marina and estimated its potential individual growth and reproduction under different migration scenarios using a Dynamic Energy Budget model. A sand temperature model was developed in order to predict the temperature experienced by lugworms according to the depth of their galleries and their bathymetric level. The food availability and the associated scaled functional response were estimated from in situ growth data and associated nitrogen content and chlorophyll-a concentration (Chla) data. The metabolic response of lugworms to temperature (temperature tolerance range, related Arrhenius temperatures) was assessed from literature data. The sand temperature model outputs did not explain alone spatial differences in individual growth and reproduction. However, an increase of food availability with bathymetry, with Chla as a proxy, well explained growth and reproduction. For now, the temperature hypothesis is discarded but other factors (desiccation or hypoxia) should be considered in future studies.
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- 2020
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27. Alkalinity production in intertidal sands intensified by lugworm bioirrigation.
- Author
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Rao, Alexandra M.F., Malkin, Sairah Y., Montserrat, Francesc, and Meysman, Filip J.R.
- Subjects
- *
WATER alkalinity , *ARENICOLIDAE , *SEDIMENT-water interfaces , *HYDROGEN-ion concentration , *BIOTURBATION - Abstract
Porewater profiles and sediment-water fluxes of oxygen, nutrients, pH, calcium, alkalinity, and sulfide were measured in intertidal sandflat sediments from the Oosterschelde mesotidal lagoon (The Netherlands). The influence of bioturbation and bioirrigation by the deep-burrowing polychaete Arenicola marina on the rates and sources of benthic alkalinity generation was examined by comparing measurements in intact and defaunated sediment cores before and after the addition of A. marina in summer and fall 2011. Higher organic matter remineralization rates, shallower O 2 penetration, and greater sediment-water solute fluxes were observed in summer, consistent with higher sediment community metabolic rates at a higher temperature. Lugworm activity stimulated porewater exchange (5.1 × in summer, 1.9 × in fall), organic matter remineralization (6.2 × in summer, 1.9 × in fall), aerobic respiration (2.4 × in summer, 2.1 × in fall), alkalinity release (4.7 × in summer, 4.0 × in fall), nutrient regeneration, and iron cycling. The effects of lugworm activity on net sediment-water fluxes were similar but more pronounced in summer than in fall. Alkalinity release in fall was entirely driven by metabolic carbonate dissolution, while this process explained between 22 and 69% of total alkalinity production in summer, indicating the importance of other processes in this season. By enhancing organic matter remineralization and the reoxidation of reduced metabolites by the sediment microbial community, lugworm activity stimulated the production of dissolved inorganic carbon and metabolic acidity, which in turn enhanced metabolic CaCO 3 dissolution efficiency. In summer, evidence of microbial long distance electron transport (LDET) was observed in defaunated sediment. Thus, alkalinity production by net carbonate dissolution was likely supplemented by anaerobic respiration and LDET in summer. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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28. An abundant small sized fish as keystone species? The effect of Pomatoschistus microps on food webs and its trophic role in two intertidal benthic communities: A modeling approach.
- Author
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Pockberger, Moritz, Kellnreitner, Florian, Ahnelt, Harald, Asmus, Ragnhild, and Asmus, Harald
- Subjects
- *
FOOD chains , *INTERTIDAL ecology , *ARENICOLA , *ECOLOGY , *PRODUCTION scheduling , *PRODUCTION planning - Abstract
Abstract: Ecological network analysis (ENA) was used to study the effects of Pomatoschistus microps on energy transport through the food web, its impact on other compartments and its possible role as a keystone species in the trophic webs of an Arenicola tidal flat ecosystem and a sparse Zostera noltii bed ecosystem. Three ENA models were constructed: (a) model 1 contains data of the original food web from prior research in the investigated area by Baird et al. (2007), (b) an updated model 2 which included biomass and diet data of P. microps from recent sampling, and (c) model 3 simulating a food web without P. microps. A comparison of energy transport between the different models revealed that more energy is transported from lower trophic levels up the food chain, in the presence of P. microps (models 1 and 2) than in its absence (model 3). Calculations of the keystone index (KSi) revealed the high overall impact (measured as εi ) of this fish species on food webs. In model 1, P. microps was assigned a low KSi in the Arenicola flat and in the sparse Z. noltii bed. Calculations in model 2 ranked P. microps first for keystoneness and εi in both communities, the Arenicola flat and the sparse Z. noltii bed. Taken together, our results give insight into the role of P. microps when considering a whole food web and reveal direct and indirect trophic interactions of this small-sized fish species. These results might illustrate the impact and importance of abundant, widespread species in food webs and facilitate further investigations. [Copyright &y& Elsevier]
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- 2014
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29. The effects on antibiotic production in a hetrologous system by sare4854, a novel member of streptomyces actibiotic regulatory protein family (SARP) from a marine microorganism Salinispora arenicola CNH643 DSM 44819.
- Author
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SHU Xiao, YU Jinlong, WU Shaowen, ZHANG Wei, MA Yanling, ZHU Minzhe, XIA Sisi, XIA Shichao, ZHANG Hao, LI Aiying, and QI Chao
- Subjects
STREPTOMYCES ,BACTERIAL transformation ,DNA-binding proteins ,BIOSYNTHESIS ,ARENICOLA - Abstract
Streptomyces antibiotic regulatory proteins (SARP) normally play positive regulatory roles during streptomyces antibiotics biosynthesis. sare4854, a gene in Salinispora arenicola CNH643 DSM 44819 was proposed to encode a SARP. Here, sare4854 was expressed in a heterolohous system for functional characterization. However, the antibiotic production in resultant strain was repressed significantly. Bioinfomatic analysis showed that sare4854 has an additional nucleoside triphosphate hydrolases (NTPase) domain at the C-terminus, besides a SARP-like domain (DBD: DNA binding domain and BTA: bacterial transcnptional activation domain) at the N-terminus conserved in all SARPs. The possible mechanism of sare4854 in antibiotic synthesis in this abnormal phenomenon was discussed here. [ABSTRACT FROM AUTHOR]
- Published
- 2014
30. Short-term fate of seagrass and macroalgal detritus in Arenicola marina bioturbated sediments
- Author
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Cintia Organo Quintana, Erik Kristensen, Alexandra C. G. Thomson, and Thomas Bruun Valdemarsen
- Subjects
0106 biological sciences ,010504 meteorology & atmospheric sciences ,Fucus vesiculosus ,Aquatic Science ,01 natural sciences ,Carbon degradation ,Lugworm ,Carbon burial ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,Detritus ,Ecology ,biology ,010604 marine biology & hydrobiology ,Zostera marina ,biology.organism_classification ,Seagrass ,Arenicola ,Environmental science ,Bioturbation - Abstract
Seagrass meadows are globally important ecosystems for carbon (C) sequestration. However, bioturbation by benthic fauna can alter the distribution, degradation and overall preservation of C in the sediment. We performed a 4 wk laboratory experiment to investigate the short-term degradation and burial of 2 major C sources in bare sediments associated with seagrass ecosystems. Eelgrass Zostera marina and macroalgal (Fucus vesiculosus) detritus were amended in sediment with and without bioturbation by the common polychaete Arenicola marina. Bioturbation did not significantly affect the loss of eelgrass detritus (>0.5 mm), but caused a rapid burial of this material as a discrete layer (55% recovery) at sediment depths ranging from 8 to 14 cm. A. marina effects on macroalgal detritus were more pronounced, resulting, in total, in an 80% loss of macroalgal detritus by microbial degradation and worm ingestion. We conclude that A. marina bioturbation effectively buries eelgrass detritus into deep anoxic sediments, but we cannot confirm that this leads to enhanced C preservation in coastal ecosystems. In contrast, A. marina bioturbation significantly increases the degradation of macroalgal tissue, and it is unlikely that this detritus is a major source for permanent C burial.
- Published
- 2020
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31. Mixed-habitat assimilation of organic waste in coastal environments - It's all about synergy!
- Author
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Xavier Pochon, Thomas Bruun Valdemarsen, Nigel Keeley, Raymond Bannister, Tore Strohmeier, and Thomas G. Dahlgren
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Environmental Engineering ,010504 meteorology & atmospheric sciences ,Fish farming ,Fisheries ,010501 environmental sciences ,Environment ,01 natural sciences ,Environmental Chemistry ,Ecosystem ,Ophicomina nigra ,Arenicola marina ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Waste Products ,Polychaete ,biology ,Bacteria ,Ecology ,Ophiocomina nigra ,Sediment ,Microbial eDNA ,biology.organism_classification ,Pollution ,Habitat ,Benthic zone ,Salmon farm ,Arenicola ,Environmental science ,Benthic enrichment ,Environmental Monitoring - Abstract
Fish farms are increasingly situated in strong current sites above or near to mixed-bottom habitats that include organisms not normally considered in the context of organic enrichment. This study takes a holistic view of the benthic enrichment process by combining different survey techniques on complimentary spatial scales: conventional macrofaunal cores, larger-scale visual quantification of epibiota and environmental-DNA metabarcoding of microbial communities. A large tube forming polychaete (Arenicola marina), normally found intertidally and living too deep for conventional sampling, was observed occupying an opportunistic niche in areas of high deposition and in very close association with Capitellid worm complexes. The surface-dwelling brittlestar, Ophiocomina nigra, was abundant at distances of 250–1000 m from Farm-B, suggesting a positive response to enrichment, but was displaced where sedimentation exceed 5 g m 2 d −1. A corresponding gradient was evident within the sediment microbial communities, supporting established theories about ecosystem engineering and multi-species synergies for organic waste assimilation. Many of the bacteria present in the near-farm sediments were linked to the farmed fish and fish health issues suggesting one or two-way inoculation pressures. These functionally different benthic organisms are intrinsically linked and the resulting synergy has the potential to assimilate significant quantities of anthropogenically produced organic waste contributing to environmental sustainability.
- Published
- 2020
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32. To Estimate Growth Function by the Use of SLW Index in the Sea Cucumber Holothuria arenicola (Holothuroidea: Echinodermata) of Pakistan (Northern Arabian Sea)
- Author
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Saima Siddique and Zarrien Ayub
- Subjects
0106 biological sciences ,biology ,business.industry ,010604 marine biology & hydrobiology ,04 agricultural and veterinary sciences ,Holothuria arenicola ,Aquatic Science ,Oceanography ,biology.organism_classification ,Von bertalanffy ,01 natural sciences ,Total Body Length ,Sea cucumber ,Animal science ,Growth function ,Aquaculture ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,Arenicola ,Allometry ,business - Abstract
Accurate measurements of weight and length in sea cucumbers are difficult due to body wall elasticity. The compound indices that combine different biometric parameters can be utilized to obtain more precise biometric relationships. We estimated parameters of the von Bertalanffy growth functions like K, L∞ and t0 in Holothuria arenicola. Total length, total weight and gutted weight were measured. A compound index in which the length and width were combined to produce the SLW index (square root of length multiplied by width) and its associated transformation like Le (recalculated length) were evaluated and the morphometric relationships between total weight/total length, gutted weight/ total length, total weight/recalculated length and gutted weight/recalculated length were also investigated. Student’s t-test showed that H. arenicola grows allometrically (b not equal to 3, P
- Published
- 2018
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33. Linking life-history traits, spatial distribution and abundance of two species of lugworms to bait collection: A case study for sustainable management plan
- Author
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Sylvie M. Gaudron, Charline Fisseau, Sébastien Lefebvre, Lola De Cubber, and Vincent Cornille
- Subjects
0106 biological sciences ,Conservation of Natural Resources ,Geologic Sediments ,Spawning ,Population ,Fisheries ,Biodiversity ,Conservation ,Aquatic Science ,Population structure ,Oceanography ,Recreational fisheries ,010603 evolutionary biology ,01 natural sciences ,Lugworm ,Arenicola defodiens ,Abundance (ecology) ,Animals ,English channel ,14. Life underwater ,Arenicola marina ,education ,Shore ,geography ,education.field_of_study ,geography.geographical_feature_category ,biology ,010604 marine biology & hydrobiology ,fungi ,Polychaeta ,General Medicine ,biology.organism_classification ,Pollution ,Fishery ,Benthic zone ,Arenicola ,Marine protected area ,France ,Seasons ,Size at first maturity - Abstract
Arenicola spp. are marine benthic polychaetes dug for bait by anglers. Without regulation, this activity can lead to the decrease of lugworms' population meanwhile affecting the physical characteristics of the beach and the biodiversity. Here, we identified through morphology and genetics two species of lugworms, Arenicola marina and A. defodiens, within a Marine Protected Area of the Eastern English Channel (France). For each species, abundance and spatial distribution were assessed using a stratified random sampling and interpolation at four studied sites, as well as some life-history traits. These data were compared to lugworms' collection data to estimate its sustainability and to provide potential management measures. At one site, A. marina was present in large numbers on the higher and middle shore, whereas A. defodiens occupied the lower shore. At the other sites, both species co-occurred on the lower shore, and A. marina individuals were less numerous and lacking recruits. Spawning periods for A. marina occurred in early autumn and in late autumn for A. defodiens. The size at first maturity of A. marina was at 3.8 cm of trunk length (between 1.5 and 2.5 years old). One site (Au) appeared in need for management when linking abundance data with bait collection, where harvest of both species represented ∼14% of the total amount of lugworms and was above the carrying capacity of the beach for A. marina. The retail value associated to lugworm harvesting within the MPA was estimated at the same level as the shrimp retail value. Our results highlight the need for some fishery regulations.
- Published
- 2018
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34. Effects of volumetric soil water content and fertilizer rate on growth and baicalin accumulation in two species of Scutellaria
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Gul Shad Ali, Brian J. Pearson, Amanda Morgan, Lance Osborne, and Kimberly A. Moore
- Subjects
0106 biological sciences ,chemistry.chemical_classification ,food.ingredient ,biology ,Flavonoid ,food and beverages ,04 agricultural and veterinary sciences ,engineering.material ,biology.organism_classification ,01 natural sciences ,Horticulture ,chemistry.chemical_compound ,food ,Nutrient ,chemistry ,040103 agronomy & agriculture ,Scutellaria ,engineering ,0401 agriculture, forestry, and fisheries ,Arenicola ,Fertilizer ,Water content ,Baicalin ,Scutellaria integrifolia ,010606 plant biology & botany - Abstract
Scutellaria or skullcap is a genus containing approximately 350 species of flowering plants, many of which are sold and marketed for their medicinal value. Flavonoids found in Scutellaria spp. have demonstrated anti-inflammatory, antiviral, sedative, antithrombotic and antioxidant affects. Baicalin, a flavonoid produced by Scutellaria spp., is an important compound used to treat anxiety. Scutellaria spp. have potential as commercially valuable specialty crops based on their visual and medicinal properties; however, a lack of commercial production techniques for successful cultivation of this genus precludes adoption by most growers. The influence of plant production techniques on flowering and baicalin synthesis is undocumented; thus, empirical research is needed for development of commercial production protocol. Objectives of this research were to investigate the effect of nutrient application rate and plant available water on growth and baicalin synthesis in Scutellaria arenicola and Scutellaria integrifolia, two common species of Scutellaria found in eastern United States. To accomplish these objectives, S. arenicola and S. integrifolia were cultivated in a greenhouse and subjected to one out of four nutrient application rates and one out of two volumetric water content rates. Results demonstrated that synthesis of baicalin, the main flavonoid of the Scutellaria genus that contributes to its reported medicinal benefits, occurred in both species. Fertilization rate and volumetric water content were found to influence both plant growth and baicalin concentration in S. integrifolia. In contrast to results observed for S. integrifolia, volumetric soil water and nutrient application rate did not influence plant growth in S. arenicola. Scutellaria spp. cultivated in the greenhouse had similar concentrations of baicalin to those harvested from the wild, undisturbed natural habitats. Results from this investigation will assist in development of commercial production protocol for these species and provides the first foundational research that has reported the presence of baicalin, a high value medicinal compound in S. arenicola. Key words: Skullcap, medicinal, flavonoid, cultivation, production.
- Published
- 2018
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35. NOTES ON TWO COPRINOID FUNGI (BASIDIOMYCOTA, AGARICALES) FROM THE BRAZILIAN SEMIARID REGION
- Author
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F. Wartchow and A. R. P. Gomes
- Subjects
0301 basic medicine ,biology ,Coprinus ,Plant Science ,Coprinopsis ,030108 mycology & parasitology ,biology.organism_classification ,Agaricomycetes ,Coprinellus ,03 medical and health sciences ,Botany ,Arenicola ,Agaricales ,Pileus ,Agaricomycetidae ,Ecology, Evolution, Behavior and Systematics - Abstract
Coprinellus phaeoxanthus A.R.Gomes & Wartchow is described as a new species and is characterised by cordiform basidiospores similar to those of the recently described Coprinellus arenicola. However, it differs in the presence of voluminous pleurocystidia in the velar elements, which are shorter than in Coprinellus arenicola, and in the lack of clamp connections. In addition, exsiccatae of a Brazilian collection identified as ‘Coprinus xerophilus’ are analysed, and because of the star-shaped velar patch on the pileus and the non-volvate stipe base, it is considered to be the same as Coprinus calyptratus, representing a new record from South America.
- Published
- 2018
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36. Zur Anatomie und Physiologie der Kiemenwürmer / von Adolph Eduard Grube.
- Author
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Grube, Adolph Eduard, 1812-1880, Harvard University, Museum of Comparative Zoology, Ernst Mayr Library, and Grube, Adolph Eduard, 1812-1880
- Subjects
Anatomy ,Annelida ,Arenicola ,Eunice (Annelida) ,physiology ,Polynoe - Published
- 1838
37. Type studies on Coltricia and Coltriciella described by E. J. H. Corner from Southeast Asia.
- Author
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Dai, Yu-Cheng and Li, Hai-Jiao
- Subjects
- *
ARENICOLA , *FUNGI classification , *TYPE specimens (Natural history) , *INONOTUS , *HYMENOCHAETACEAE - Abstract
Type specimens or original specimens of 15 taxa in Coltricia and Coltriciella described by Corner from Southeast Asia were examined. Among these taxa, ten names were published invalidly because no type was designated in the original publication. The following two names are accepted in the original genus: Coltricia hirtipes and C. strigosipes. Two new species, Inonotus parvulus and I. magnus, are described. Validating descriptions are given for the following five species: Coltricia albidipes, C. arenicola, C. kinabaluensis, C. progressus, and Coltriciella corticicola. The original materials of C. grandis, C. gracilipes, and C. hirtipes var. pleuropodalis are, respectively, identical to Coltricia crassa, C. pyrophila, and C. minor. In addition, C. subfastosa seems to be Pyrrhoderma adamantinum, although no basidiospores were found in the type specimen. Illustrated descriptions of eight species are given. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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38. SOME RARE AND NOTEWORTHY LARGER FUNGI IN BULGARIA.
- Author
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Assyov, B., Stoykov, D. Y., and Gyosheva, M.
- Subjects
- *
FUNGI , *CANTHARELLUS , *ARENICOLA , *TRICHOLOMATACEAE , *MARASMIUS - Abstract
The paper reports 23 rare and noteworthy Bulgarian larger fungi including the confirmation of the presence of Paxillus rubicundulus in the country and the second records of Cantharellus pallens, Crinipellis mauretanica, Ditiola peziziformis, Geopora arenicola, Laccaria proxima, Marasmius collinus and Pterula multifida. Brief descriptions are provided for Cantharellus pallens, Ditiola peziziformis, Geopora arenicola, Gymnopus quercophilus, Marasmius collinus, and Paxillus rubicundulus based upon the Bulgarian specimens. Geopora arenicola, Trichoglossum hirsutum var. hirsutum, Cantharellus amethysteus, C. pallens, Laccaria proxima and Paxillus rubicundulus are illustrated. In addition, new collections of some threatened, rare and less known species are also included. [ABSTRACT FROM AUTHOR]
- Published
- 2012
39. Apotrachelocerca arenicola (Kahl, 1933) n. g., comb. n. (Protozoa, Ciliophora, Trachelocercidae): Morphology and Phylogeny.
- Author
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XU, YUAN, LI, JIAMEI, GAO, FENG, HU, XIAOZHONG, and AL-RASHEID, KHALED A.S.
- Subjects
- *
ARENICOLA , *ARENICOLIDAE , *PHYLOGENY , *GENETICS , *BIOLOGICAL evolution - Abstract
ABSTRACT. During faunistic study on psammophilic ciliates along the coast of Qingdao, China, a population of Trachelocerca arenicola Kahl, 1933 was found and then investigated using silver staining and gene sequencing methods. The results indicated that it represented a new genus Apotrachelocerca characterized by uninterrupted circumoral kineties composed of two rows of dikinetids and no brosse or ciliary tuft in the oral cavity. This new genus should be assigned to the family Prototrachelocercidae Foissner, 1996. Based on the small subunit rRNA gene sequence, phylogenetic trees revealed that Apotrachelocerca arenicola occupied a basal position to other trachelocercids. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
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40. Identification of amino acid residues responsible for taurocyamine binding in mitochondrial taurocyamine kinase from Arenicola brasiliensis
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Tanaka, Kumiko, Matsumoto, Tamotsu, and Suzuki, Tomohiko
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AMINO acids , *TRANSFERASES , *PROTEIN kinases , *PROTEIN binding , *MITOCHONDRIA , *ARENICOLA , *CREATINE kinase - Abstract
Abstract: In order to investigate the residues associated with binding of the substrate taurocyamine in Arenicola mitochondrial taurocyamine kinase (TK), we performed Ala-scanning of the amino acid sequence HTKTV at positions 67–71 on the GS loop, and determined apparent K m and V max (appK m and appV max, respectively) of the mutant forms for the substrates taurocyamine and glycocyamine. The appK m values for taurocyamine of the K69A, T70A and V71A mutants were significantly increased as compared with wild-type, suggesting that these residues are associated with taurocyamine binding. Of special interest is a property of V71A mutant: its catalytic efficiency for glycocyamine was twice that for taurocyamine, indicating that the V71A mutant acts like a glycocyamine kinase, rather than a TK. The role of the amino acid residue K95 of Arenicola MiTK was also examined. K95 was replaced with R, H, Y, I, A and E. K95R, K95H and K95I have a 3-fold higher affinity for taurocyamine, and activity was largely lost in K95E. On the other hand, the K95Y mutant showed a rather unique feature; namely, an increase in substrate concentration caused a decrease in initial velocity of the reaction (substrate inhibition). This is the first report on the key amino acid residues responsible for taurocyamine binding in mitochondrial TK. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
- View/download PDF
41. Response of intertidal populations to climate: Effects of extreme events versus long term change
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Wethey, David S., Woodin, Sarah A., Hilbish, Thomas J., Jones, Sierra J., Lima, Fernando P., and Brannock, Pamela M.
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CLIMATE change , *CLIMATE & biogeography , *SEMIBALANUS , *EFFECT of global warming on animals , *ANIMAL mortality , *ANIMAL species , *METAPOPULATION (Ecology) , *ARENICOLA , *CHTHAMALUS - Abstract
Abstract: Biogeographic change in response to climate is a ratchet-like process, with gradual long term change punctuated by advances and retreats caused by extreme events. The winter of 1962–63 was the coldest winter since 1740, and caused lasting widespread changes in intertidal populations in Europe. Against the background of several decades of gradual warming, the severely cold winter of 2009–10 provided an opportunity to test mechanistic hypotheses regarding the control of biogeographic limits, including recruitment failure and adult mortality. As a result of enhanced recruitment in cold conditions, the northern barnacle Semibalanus balanoides expanded its range in both France and Iberia at an average rate of 25kmyear−1. The northern polychaete Arenicola marina had high recruitment in northern France, which filled in a gap in its range in the central English Channel. The southern barnacles Chthamalus montagui and Chthamalus stellatus, which are sensitive to cold winters, suffered recruitment failure but no adult mortality at their northern limit in continental Europe. The southern limpet, Patella rustica and the southern polychaete Diopatra which are sensitive to cold summers, had virtually no change in distribution, as a result of the prior warm summer. The southern mussel Mytilus galloprovincialis suffered little adult mortality at its northern limit in continental Europe. Metapopulation models of future distribution, based on these mechanisms, and validated by hindcasts of historical biogeography, indicate that a regime shift will occur in northern Europe as southern species like Diopatra are able to invade the English Channel and from there enter the North Sea. These models and the historical biogeographic record confirm the view that biogeographic change is punctuated by population responses to extreme events. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
- View/download PDF
42. New species and combinations in the African Restionaceae
- Author
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Linder, H.P.
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- *
RESTIONACEAE , *ARENICOLA , *PLANT species , *PLANT classification , *PLANT habitats - Abstract
Abstract: Eight new species of the African Restionaceae (Restionoideae) are described, viz.: Cannomois anfracta, Cannomois arenicola, Cannomois grandis, Nevillea vlokii, Thamnochortus kammanassiae, Willdenowia pilleata, Restio uniflorus and Restio mkambatiae. A key to the species of Cannomois is provided, as well as a table comparing the characters of the three species in Nevillea. For all new species, notes on the affinities of the species and their habitats are provided. Two new combinations, Cannomois primosii (Pillans) H.P. Linder and Cannomois robusta (Kunth) H.P. Linder, are made. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
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43. Diversity of Mycobacterium species from marine sponges and their sensitivity to antagonism by sponge-derived rifamycin-synthesizing actinobacterium in the genus Salinispora H. Izumi et al. Diversity of sponge-associated mycobacteria.
- Author
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Izumi, Hiroshi, Gauthier, Marie E. A., Degnan, Bernard M., Ng, Yi Kai, Hewavitharana, Amitha K., Shaw, P. Nicholas, and Fuerst, John A.
- Subjects
- *
MYCOBACTERIUM tuberculosis , *SPONGES (Invertebrates) , *ANTIBIOSIS , *RIFAMYCINS , *ARENICOLA , *PHYLOGENY - Abstract
Eleven isolates of Mycobacterium species as well as an antimycobacterial Salinispora arenicola strain were cultured from the sponge Amphimedon queenslandica. The 16S rRNA, rpoB, and hsp65 genes from these Mycobacterium isolates were sequenced, and phylogenetic analysis of a concatenated alignment showed the formation of a large clade with Mycobacterium poriferae isolated previously from another sponge species. The separation of these Mycobacterium isolates into three species-level groups was evident from sequence similarity and phylogenetic analyses. In addition, an isolate that is phylogenetically related to Mycobacterium tuberculosis was recovered from the sponge Fascaplysinopsis sp. Several different mycobacteria thus appear to co-occur in the same sponge. An actinobacterium closely related to S. arenicola, a known producer of the antimycobacterial rifamycins, was coisolated from the same A. queenslandica specimen from which mycobacteria had been isolated. This Salinispora isolate was confirmed to synthesize rifamycin and displayed inhibitory effects against representatives from two of three Mycobacterium phylotype groups. Evidence for antagonism of sponge-derived Salinispora against sponge-derived Mycobacterium strains from the same sponge specimen and the production of antimycobacterial antibiotics by this Salinispora strain suggest that the synthesis of such antibiotics may have functions in competition between sponge microbial community members. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
44. Shared Biosynthesis of the Saliniketals and Rifamycins in Salinispora arenicola is Controlled by the sare1259-Encoded Cytochrome P450.
- Author
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Wilson, Micheal C., Gulder, Tobias A. M., Mahmud, Taifo, and Moore, Bradley S.
- Subjects
- *
BIOSYNTHESIS , *RIFAMYCINS , *ARENICOLA , *CYTOCHROME P-450 , *POLYKETIDES , *ACTINOBACTERIA , *ORNITHINE decarboxylase - Abstract
Saliniketals A and B are unusual polyketides from the marine actinomycete Salinispora arenicola that inhibit ornithine decarboxylase induction. The structural similarities between the saliniketals and the ansa chain of the potent rifamycin antibiotics, which co-occur in the fermentation broth, suggest a common origin between the two compound classes. Using PCR-directed mutagenesis, chemical complementation studies, and stable isotope feeding experiments, we showed that the saliniketals are byproducts of the rifamycin biosynthetic pathway diverging at the stage of 34a-deoxyrifamycin W. Our results suggest that a single enzyme, the cytochrome P450 monooxygenase encoded by sare1259, catalyzes multiple oxidative rearrangement reactions on 34a-deoxyrifamyin W to yield both the saliniketal and rifamycin structural classes. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
45. Impact of Arenicola marina (Polychaeta) on the microbial assemblages and meiobenthos in a marine intertidal flat.
- Author
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Yanli Lei, Stumm, Karen, Volkenborn, Nils, Wickham, Stephen A., and Berninger, Ulrike-G.
- Subjects
- *
ARENICOLA marina , *ARENICOLA , *POLYCHAETA , *MEIOFAUNA , *FRESHWATER animals , *NEMATODES , *PROKARYOTES , *RANGE management , *AQUATIC invertebrates - Abstract
The benthic microbial food web can be responsible for a large proportion of benthic carbon cycling yet there are few data on the trophic interactions between this food web and macrobenthos. A large-scale field experiment was conducted to investigate effects of eliminating the polychaete Arenicola marina on benthic microbes (prokaryotes, heterotrophic and autotrophic protists) and metazoan meiofauna in a marine intertidal flat of the North Sea, Germany. Over a period of 2 years, quantity and composition of micro- and meiobenthos from unmanipulated sites were compared to those from sites deplete of lugworms. These grazer treatments were cross-classified with different sediment characteristics (low- and mid-intertidal areas). Lugworm removal resulted in an initial increase in abundance of prokaryotes and nanoflagellates, which became less pronounced in the second year. Ciliates were not affected quantitatively, but in the absence of lugworms, diversity and the proportion of carnivorous forms increased. Meiobenthos (nematodes, ostracods and copepods) were affected only moderately. The observed changes are probably due to a combination of release from grazing/predation pressure, changes in the species composition of higher trophic levels (namely large polychaetes) and altered environmental conditions (such as depth of the oxygenated layer and sediment grain size). Spatial differences between sites of different tidal exposure/grain size appeared to be as large as temporal differences during the 2 years following the manipulation of the system. We conclude that in intertidal sediments, indirect effects due to habitat transformation are as important as direct biological interactions (grazing pressure and competition) for the dynamics of the benthic microbial food web. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
46. Bioelectrical activity in the heart of the lugworm Arenicola marina.
- Author
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Abramochkin, Denis V., Tennova, Natalia V., Hirazova, Elizaveta E., Pizgareva, Anna V., Kuzmin, Vladislav S., and Sukhova, Galina S.
- Subjects
- *
ARENICOLIDAE , *ARENICOLA marina , *CARDIAC arrest , *HEART failure , *HEART diseases - Abstract
Standard microelectrode technique was used to study electrical activity of the isolated heart of the polychaete annelid, Arenicola marina. Typical pacemaker activity with slow diastolic depolarization was observed in all recordings. The average maximum diastolic potential (−58.4 ± 3.2 mV), the average amplitude of the action potential (28.7 ± 4.7 mV) and the average total duration of the action potential (2,434 ± 430 ms) were determined. There has been no gradient of automaticity observed in our studies, which suggests that all regions of the Arenicola heart could possess pacemaker functions. Acetylcholine (ACh) produced a concentration dependent (5 × 10−8–5 × 10−5 M) increase of the beating rate via increase in the rate of the diastolic depolarization. ACh (5 × 10−5 M) increased beating rate by 2.5-fold compared to the control rate. A stronger action of ACh resulted in depolarization, block of action potential generation and contracture of the heart. The non-hydrolysable ACh analog carbacholine (10−8–10−6 M) produced similar effects. All effects of ACh and carbacholine were abolished by 5 × 10−6 M atropine. d-Tubocurarine (5 × 10−5 M) did not significantly alter effects of ACh or carbacholine. Epinephrine (10−8–10−6 M) caused the slowing of pacemaker activity and marked decrease of action potential duration. 10−6 M epinephrine produced complete cardiac arrest. The effects of epinephrine were not significantly altered by the β-blocker propranolol (5 × 10−6 M). The β-agonist isoproterenol (10−7–10−5 M) and the α-agonist xylometazoline (10−6–10−5 M) did not produce significant effects. Thus, cholinergic effects in the Arenicola heart are likely to be mediated via muscarinic receptors, while the nature of adrenergic effects needs further investigation. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
47. Arenicolous mycelial fungi from the littoral of the Vostok Bay (Peter the Great Bay, the Sea of Japan).
- Author
-
Zvereva, L.
- Subjects
- *
MARINE fungi , *ARENICOLA , *HABITATS , *ASCOMYCETES - Abstract
The taxonomic composition of marine mycelial fungi was determined in the interstitial habitats of the Vostok Bay littoral (Peter the Great Bay, the Sea of Japan). A total of 39 species of ascomycetes and anamorphic fungi were detected and identified. The predominant species of the intertidal zone were Corollospora maritima, C. lacera, Carbosphaerella leptosphaerioides, Arenariomyces trifurcatus ( Ascomycota), Alternaria alternata, Scolecobasidium arenarium, and Zalerion maritimum (anamorphic fungi). The complete list of species of obligately marine ascomycetes and anamorphic fungi from the interstitial habitats of the Vostok Bay littoral is presented for the first time [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
48. Mudflat biota since the 1930s: change beyond return?
- Author
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Reise, Karsten, Herre, Elisabeth, and Sturm, Manfred
- Subjects
- *
INTRODUCED species , *TIDAL flats , *BIOTIC communities , *ARENICOLA - Abstract
Where, since the 1980s, patchy and variable green algal mats are prevailing, distinct belts of an amphipod ( Corophium volutator) and seagrass ( Zostera spp.) had dominated in the 1930s. The zonation between tide marks has been mapped in a sheltered sedimentary bay in the Wadden Sea near the island of Sylt (coastal eastern North Sea). Maps on vegetation from 1924 and on selected macrobenthos from 1932 and 1934 are compared with biannual surveys conducted from 1988 to 2006. Rising high water levels and eutrophication are suggested to be major causes of the observed long-term changes. In front of a saltmarsh, a sandy beach developed and partly displaced former cyanobacterial mats. Advancing sandiness may have inhibited C. volutator and facilitated lugworms, Arenicola marina, in the upper tidal zone. A variable occurrence of green algal mats arising in the 1980s affected infauna and seagrass by smothering the biota underneath. This dissolved a coherent belt of Zostera noltii. In the lower tidal zone, natural disturbances had lasting effects on the occurrence of mussels with attached fucoid algae. The spectrum of species became enriched by alien species (13% of macrobenthic taxa). A reversal to habitat structure and biotic zonation of the 1920-1930s does not seem possible. Aliens, in combination with climate change, are expected to further divert the ecological pattern to new configurations. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
49. Growth inhibition and induction of early apoptosis by arenicolsterol A, a novel cytotoxic enolic sulphated sterol from the marine annelid, Arenicola cristata.
- Author
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Wang, LIANG, Chen, BIN, Shen, XIAN-RONG, Zhou, YUE-YANG, Jiang, DING-WEN, Li, JIA, and Kong, JI-LIE
- Subjects
- *
STEROLS , *ANNELIDA , *ARENICOLA , *CANCER cells , *TUMORS - Abstract
Arenicolsterol A (ASA), a novel cytotoxic enolic sulphated sterol, was isolated from the marine annelid, Arenicola cristata (AC). Growth inhibition of this compound on cancer cell lines was determined by MTT assay and suppression of tumour stem cells colony formation. The results showed that ASA was selectively cytotoxic on HeLa cell line (IC50 = 6.00 ± 1.16 μmol L- 1 on HeLa cell line, IC50 = 10.85 ± 0.97 μmol L- 1 on 929 cell line and 14.72 ± 1.55 μmol L- 1 on NCI-h6 cell line). In addition, the apoptosis induced by ASA was verified from monitoring the stainability with Annexin V and propidium iodine by a fluorescence-activated cell sorter. The experimental data confirmed that ASA could induce apoptosis in HeLa cells by arresting early stage in apoptosis. Meanwhile, the apoptosis was found to be correlative with the inhibition of the protein tyrosine phosphatases (cdc25A, cdc25B, JSP1, etc). Therefore, ASA might be a novel promising precursor of anticancer medicines. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
50. Biomechanical warfare in ecology; negative interactions between species by habitat modification.
- Author
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van Wesenbeeck, B. K., van de Koppel, J., Herman, P. M. J., Bakker, J. P., and Bouma, T. J.
- Subjects
- *
ECOLOGY , *HABITATS , *BIOTIC communities , *SPECIES , *BIOLOGICAL classification , *ENVIRONMENTAL sciences , *SALT marshes , *ARENICOLA , *EXPERIMENTAL design - Abstract
Since the introduction of the term ecosystem engineering by Jones et al. many studies have focused on positive, facilitative interactions caused by ecosystem engineering. Much less emphasis has been placed on the role of ecosystem engineering in causing negative interactions between species. Here, we report on negative interactions between two well known ecosystem engineers occurring at the interface of salt marsh and intertidal flat (i.e. common cordgrass Spartina anglica and lugworms Arenicola marina), via modification of their joint habitat. A field survey indicated that, although both species share a common habitat, they rarely co-occur on small spatial scales (<1 m). Experiments in the field and in mesocosms reveal that establishment of small Spartina plants is inhibited in Arenicola-dominated patches because of low sediment stability induced by the lugworms. In turn, Arenicola establishment in Spartina-dominated patches is limited by high silt content, compactness and dense rooting of the sediment caused by Spartina presence. Our results show that negative interactions by modification of the environment can result in rapid mutual exclusion, particularly if adverse effects of habitat modification are strong and if both species exhibit positive feedbacks. This illustrates the potential for negative interactions via the environment to affect community composition. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
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