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Recent advances on surface-assisted synthesis have demonstrated that arrays of nanometer wide graphene nanoribbons can be laterally coupled with atomic precision to give rise to a highly anisotropic nanoporous graphene structure. Electronically, this graphene nanoarchitecture can be conceived as a set of weakly coupled semiconducting 1D nanochannels with electron propagation characterized by substantial interchannel quantum interferences. Here, we report the synthesis of a new nanoporous graphene structure where the interribbon electronic coupling can be controlled by the different degrees of freedom provided by phenylene bridges that couple the conducting channels. This versatility arises from the multiplicity of phenylene cross-coupling configurations, which provides a robust chemical knob, and from the interphenyl twist angle that acts as a fine-tunable knob. The twist angle is significantly altered by the interaction with the substrate, as confirmed by a combined bond-resolved scanning tunneling microscopy (STM) and ab initio analysis, and should accordingly be addressable by other external stimuli. Electron propagation simulations demonstrate the capability of either switching on/off or modulating the interribbon coupling by the corresponding use of the chemical or the conformational knob. Molecular bridges therefore emerge as efficient tools to engineer quantum transport and anisotropy in carbon-based 2D nanoarchitectures. This research was funded by the CERCA Programme/ Generalitat de Catalunya and by Grant Nos. SEV-2017-0706, CEX2021-001214-S, PID2019-107338RB-C62, PID2019- 107338RB-C65, and PID2019-107338RB-C66 funded by MCIN/AEI/10.13039/501100011033; FLAG-ERA Grant LEGOCHIP Projects PCI2019-111890-2 and PCI2019-111933-2 funded by MCIN/AEI/10.13039/501100011033 and cofunded by the European Union; Grant Nos. TED2021- 132388B-C41, TED2021-132388B-C42, and TED2021- 132388B-C44 funded by MCIN/AEI/10.13039/ 501100011033 and the European Union NextGenerationEU/ PRTR; Xunta de Galicia (Centro de Investigación de Galicia accreditation 2019−2022, ED431G 2019/03). X.D.C., A.S., and A.G.-L. also acknowledge the financial support received from the IKUR Strategy under the collaboration agreement between Ikerbasque Foundation and DIPC on behalf of the Department of Education of the Basque Government. C.M. was supported by Grant RYC2019-028110-I funded by MICIN/AEI/10.13039/501100011033 and by the European Social Fund “ESF Investing in your future”. M.T. was supported by Grant No. BES-2017-08078 funded by MCIN/ AEI/10.13039/501100011033 and by “ESF Investing in your future”. M.B. acknowledges funding from Villum fonden (VIL 00013340).

Precise control over the size and shape of graphene nanostructures allows engineering spin-polarized edge and topological states, representing a novel source of non-conventional π-magnetism with promising applications in quantum spintronics. A prerequisite for their emergence is the existence of robust gapped phases, which are difficult to find in extended graphene systems. Here we show that semi-metallic chiral GNRs (chGNRs) narrowed down to nanometer widths undergo a topological phase transition. We fabricated atomically precise chGNRs of different chirality and size by on surface synthesis using predesigned molecular precursors. Combining scanning tunneling microscopy (STM) measurements and theory simulations, we follow the evolution of topological properties and bulk band gap depending on the width, length, and chirality of chGNRs. Our findings represent a new platform for producing topologically protected spin states and demonstrate the potential of connecting chiral edge and defect structure with band engineering., We gratefully acknowledge financial support from the Agencia Estatal de Investigación (AEI) through projects No MAT2016-78293, PID2019-107338RB, and FIS2017-83780-P, and the Maria de Maeztu Units of Excellence Programme MDM-2016-0618, from the Xunta de Galicia (Centro singular de investigación de Galicia, accreditation 2016–2019, ED431G/09), from the University of the Basque Country (Grant IT1246-19) and the Basque Departamento de Educación (PhD scholarship no. PRE_2019_2_0218 of S.S.), and from the European Regional Development Fund. We also acknowledge funding from the European Union (EU) H2020 program through the ERC (grant agreement No. 635919) and FET Open project SPRING (grant agreement No. 863098).

Spin-flip excitations of iron porphyrin molecules on Au(111) are investigated with a low-temperature scanning tunneling microscope. The molecules adopt two distinct adsorption configurations on the surface that exhibit different magnetic anisotropy energies. Density functional theory calculations show that the different structures and excitation energies reflect unlike occupations of the Fe 3d levels. We demonstrate that the magnetic anisotropy energy can be controlled by changing the adsorption site, the orientation, or the tip-molecule distance.

Recently, the edges of single-layer graphene have been experimentally doped with silicon atoms by means of scanning transmission electron microscopy. In this work, density functional theory is applied to model and characterize a wide range of experimentally inspired silicon doped zigzag-type graphene edges. The thermodynamic stability is assessed and the electronic and magnetic properties of the most relevant edge configurations are unveiled. Importantly, we show that silicon doping of graphene edges can induce a reversion of the spin orientation on the adjacent carbon atoms, leading to novel magnetic properties with possible applications in the field of spintronics. A.U. gratefully acknowledges Eusko Jaurlaritza for his predoctoral grant. We thank the Provincial Council of Gipuzkoa (RED Gipuzkoa Next 2021-CIEN-000070-01), the Basque Department of Education (IT1254-19, PIBA2020-1-0014), the Spanish Ministry of Science and Innovation (PID2019-107338RB-C66, PID2020-114754GA-I00) and the European Union (EU) through Horizon 2020 (FET-Open project SPRING Grant No. 863098) for financial support. The authors thankfully acknowledge the computer resources at MareNostrum and the technical support provided by Barcelona Supercomputing Center (QHS-2021-3-0004). We also thank DIPC and SGI-IZOSGIker (UPV/EHU) for the generous allocation of computational resources.

Spin-hosting graphene nanostructures are promising metal-free systems for elementary quantum spintronic devices. Conventionally, spins are protected from quenching by electronic band gaps, which also hinder electronic access to their quantum state. Here, we present a narrow graphene nanoribbon substitutionally doped with boron heteroatoms that combines a metallic character with the presence of localized spin 1/2 states in its interior. The ribbon was fabricated by on-surface synthesis on a Au(111) substrate. Transport measurements through ribbons suspended between the tip and the sample of a scanning tunneling microscope revealed their ballistic behavior, characteristic of metallic nanowires. Conductance spectra show fingerprints of localized spin states in the form of Kondo resonances and inelastic tunneling excitations. Density functional theory rationalizes the metallic character of the graphene nanoribbon due to the partial depopulation of the valence band induced by the boron atoms. The transferred charge builds localized magnetic moments around the boron atoms. The orthogonal symmetry of the spin-hosting state’s and the valence band’s wave functions protects them from mixing, maintaining the spin states localized. The combination of ballistic transport and spin localization into a single graphene nanoribbon offers the perspective of electronically addressing and controlling carbon spins in real device architectures., We gratefully acknowledge financial support from Grants PID2019-107338RB-C61, PID2019-107338RB-C62, PID2019-107338RB-C66, PID2019-110037GB-I00, and PCI2019-111933-2 and the Maria de Maeztu Units of Excellence Program CEX2020-001038-M funded by MCIN/AEI/10.13039/501100011033, the European Regional Development Fund, the European Union (EU) H2020 program through the FET Open project SPRING (Grant Agreement No. 863098), the Xunta de Galicia (Centro de Investigación de Galicia accreditation 2019–2022, ED431G 2019/03), the Dpto. Educación Gobierno Vasco (Grant Nos. PIBA-2020-1-0014, IT1246-19, and IT-1569-22) and the Programa Red Guipuzcoana de Ciencia, Tecnología e Innovación 2021 (Grant No. 2021-CIEN-000070-01. Gipuzkoa Next). The authors acknowledge the financial support received from the IKUR Strategy under the collaboration agreement between Ikerbasque Foundation and DIPC on behalf of the Department of Education of the Basque Government.

Molecular rotors have attracted considerable interest for their prospects in nanotechnology. However, their adsorption on supporting substrates, where they may be addressed individually, usually modifies their properties. Here, we investigate the switching of two closely related three-state rotors mounted on platforms on Au(111) using low-temperature scanning tunneling microscopy and density functional theory calculations. Being physisorbed, the platforms retain important gas-phase properties of the rotor. This simplifies a detailed analysis and permits, for instance, the identification of the vibrational modes involved in the rotation process. The symmetry provided by the platform enables active control of the rotation direction through electrostatic interactions with the tip and charged neighboring adsorbates. The present investigation of two model systems may turn out useful for designing platforms that provide directional rotation and for transferring more sophisticated molecular machines from the gas phase to surfaces.

The on-surface synthesis of edge-functionalized graphene nanoribbons (GNRs) is challenged by the stability of the functional groups throughout the thermal reaction steps of the synthetic pathway. Edge fluorination is a particularly critical case in which the interaction with the catalytic substrate and intermediate products can induce the complete cleavage of the otherwise strong C–F bonds before the formation of the GNR. Here, we demonstrate how a rational design of the precursor can stabilize the functional group, enabling the synthesis of edge-fluorinated GNRs. The survival of the functionalization is demonstrated by tracking the structural and chemical transformations occurring at each reaction step with complementary X-ray photoelectron spectroscopy and scanning tunneling microscopy measurements. In contrast to previous attempts, we find that the C–F bond survives the cyclodehydrogenation of the intermediate polymers, leaving a thermal window where GNRs withhold more than 80% of the fluorine atoms. We attribute this enhanced stability of the C–F bond to the particular structure of our precursor, which prevents the cleavage of the C–F bond by avoiding interaction with the residual hydrogen originated in the cyclodehydrogenation. This structural protection of the linking bond could be implemented in the synthesis of other sp2-functionalized GNRs., C.M. was supported by the Agency for Management of University and Research grants (AGAUR) of the Catalan government through the FP7 framework program of the European Commission under Marie Curie COFUND action 600385 funded by the CERCA Program/Generalitat de Catalunya. We acknowledge support from the Spanish Ministry of Economy and Competitiveness, MINECO (under Contracts Nos. MAT2016-78293-C6 and FIS2017-83780-P and SEV-2017-0706), the Spanish Research Agency (AEI /10.13039/501100011033, under Contracts Nos. PID2019-107338RB, PCI2019-111890-2), the European Regional Development Fund (ERDF), the Interreg V-A España-Francia-Andorra program (Contract No. EFA 194/16 TNSI), the EU project SPRING (863098), the Xunta de Galicia (Centro singular de investigación de Galicia accreditation 2019-2022, ED431G 2019/03).

This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes, Recent advances in graphene-nanoribbon-based research have demonstrated the controlled synthesis of chiral graphene nanoribbons (chGNRs) with atomic precision using strategies of on-surface chemistry. However, their electronic characterization, including typical figures of merit like band gap or frontier band's effective mass, has not yet been reported. We provide a detailed characterization of (3,1)-chGNRs on Au(111). The structure and epitaxy, as well as the electronic band structure of the ribbons, are analyzed by means of scanning tunneling microscopy and spectroscopy, angle-resolved photoemission, and density functional theory, The project leading to this publication has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 635919), from the Spanish Ministry of Economy, Industry and Competitiveness (MINECO, grant nos. MAT2016-78293-C6, FIS2015-62538-ERC), from the Basque Government (grant nos. IT-621-13, PI-2015-1-42, PI-2016-1-0027), from the European Commission in FP7 FET-ICT “Planar Atomic and Molecular Scale Devices” (PAMS) project (contract no. 610446), from the Xunta de Galicia (Centro singular de investigación de Galicia accreditation 2016−2019, ED431G/09), and from the European Regional Development Fund (ERDF)

We report the energy level alignment evolution of valence and conduction bands of armchair-oriented graphene nanoribbons (aGNR) as their band gap shrinks with increasing width. We use 4,4″-dibromo-para-terphenyl as the molecular precursor on Au(111) to form extended poly-para-phenylene nanowires, which can subsequently be fused sideways to form atomically precise aGNRs of varying widths. We measure the frontier bands by means of scanning tunneling spectroscopy, corroborating that the nanoribbon's band gap is inversely proportional to their width. Interestingly, valence bands are found to show Fermi level pinning as the band gap decreases below a threshold value around 1.7 eV. Such behavior is of critical importance to understand the properties of potential contacts in GNR-based devices. Our measurements further reveal a particularly interesting system for studying Fermi level pinning by modifying an adsorbate's band gap while maintaining an almost unchanged interface chemistry defined by substrate and adsorbate., The project leading to this publication has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 635919), from the European Union FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (Contract No. 610446), from the Spanish Ministry of Economy, Industry and Competitiveness (MINECO, Grant No. MAT2016-78293-C6), from the Basque Department of Education (PI-2016-1-0027), and from the University of Padova (Grant CPDA154322, Project AMNES).

Graphene nanoribbons (GNRs), low-dimensional platforms for carbon-based electronics, show the promising perspective to also incorporate spin polarization in their conjugated electron system. However, magnetism in GNRs is generally associated with localized states around zigzag edges, difficult to fabricate and with high reactivity. Here we demonstrate that magnetism can also be induced away from physical GNR zigzag edges through atomically precise engineering topological defects in its interior. A pair of substitutional boron atoms inserted in the carbon backbone breaks the conjugation of their topological bands and builds two spin-polarized boundary states around them. The spin state was detected in electrical transport measurements through boron-substituted GNRs suspended between the tip and the sample of a scanning tunneling microscope. First-principle simulations find that boron pairs induce a spin 1, which is modified by tuning the spacing between pairs. Our results demonstrate a route to embed spin chains in GNRs, turning them into basic elements of spintronic devices., We gratefully acknowledge financial support from Spanish Agencia Estatal de Investigación (AEI) (MAT2016-78293, PID2019-107338RB, FIS2017-83780-P, and the Maria de Maeztu Units of Excellence Programme MDM-2016-0618), from the European Union (EU) through Horizon 2020 (FET-Open project SPRING Grant. No. 863098), the Basque Departamento de Educación through the PhD fellowship No. PRE_2019_2_0218 (S.S.), the Xunta de Galicia (Centro de Investigación de Galicia accreditation 2019–2022, ED431G 2019/03), the University of the Basque Country (Grant IT1246-19), and the European Regional Development Fund (ERDF). I. P. also thanks Xunta de Galicia and European Union (European Social Fund, ESF) for the award of a predoctoral fellowship

The electronic properties of graphene nanoribbons (GNRs) can be precisely tuned by chemical doping. Here we demonstrate that amino (NH2) functional groups attached at the edges of chiral GNRs (chGNRs) can efficiently gate the chGNRs and lead to the valence band (VB) depopulation on a metallic surface. The NH2-doped chGNRs are grown by on-surface synthesis on Au(111) using functionalized bianthracene precursors. Scanning tunneling spectroscopy resolves that the NH2 groups significantly upshift the bands of chGNRs, causing the Fermi level crossing of the VB onset of chGNRs. Through density functional theory simulations we confirm that the hole-doping behavior is due to an upward shift of the bands induced by the edge NH2 groups., We acknowledge financial support from (i) AEI/FEDER-EU through grant nos. MAT2016-78293-C6, FIS2017-83780-P AEI/FEDER, EU, the Maria de Maeztu unit of excellence MDM-2016-0618, and the Severo Ochoa program (ICN2) SEV-2017-0706; (ii) the European Research Council (grant agreement no. 635919); (iii) the Xunta de Galicia (Centro Singular De Investigacion de Galicia, accreditation 2016-2019, ED431G/09); (iv) the European FET-OPEN project SPRING (#863098); (v) the European Regional Development Fund (ERDF) under the program Interreg V-A España-Francia-Andorra (contract no. EFA 194/16 TNI); (vi) the CERCA Program/Generalitat de Catalunya; (vii) the Gobierno Vasco UPV/EHU (project IT1246-19); (viii) Basque Government Project (IT-1255-19); and (ix) Diputacion Foral De Gipuzkoa RED 2019-096.

Contributing to the need for new graphene nanoribbon (GNR) structures that can be synthesized with atomic precision, we have designed a reactant that renders chiral (3,1)-GNRs after a multistep reaction including Ullmann coupling and cyclodehydrogenation. The nanoribbon synthesis has been successfully proven on different coinage metals, and the formation process, together with the fingerprints associated with each reaction step, has been studied by combining scanning tunneling microscopy, core-level spectroscopy, and density functional calculations. In addition to the GNR’s chiral edge structure, the substantial GNR lengths achieved and the low processing temperature required to complete the reaction grant this reactant extremely interesting properties for potential applications., The project leading to this publication has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 635919), from ICT-FET EU integrated project PAMS (Agreement No. 610446), from the Spanish Ministry of Science and Competitiveness (MINECO, Grant Nos. MAT2013-46593-C6-01, MAT2013-46593-C6-2-P, MAT2013-46593-C6-4-P, MAT2013-46593-C6-6-P), FEDER, from the Basque Government (Grant Nos. IT-621-13, IT-756-13, and PI2015-042), from the World Premier International Center (WPI) for Materials Nanoarchitectonics (MANA) of the National Institute for Materials Science (NIMS), Tsukuba, Japan, and from JSPS Bilateral Open Partnership Joint Research Project.

Graphene nanoribbons (GNRs) and their derivatives attract growing attention due to their excellent electronic and magnetic properties as well as the fine-tuning of such properties that can be obtained by heteroatom substitution and/or edge morphology modification. Here, we introduce graphene nanoribbon derivatives—organometallic hybrids with gold atoms incorporated between the carbon skeleton and side Cl atoms. We show that narrow chlorinated 5-AGNROHs (armchair graphene nanoribbon organometallic hybrids) can be fabricated by on-surface polymerization with omission of the cyclodehydrogenation reaction by a proper choice of tailored molecular precursors. Finally, we describe a route to exchange chlorine atoms connected through gold atoms to the carbon skeleton by hydrogen atom treatment. This is achieved directly on the surface, resulting in perfect unsubstituted hydrogen-terminated GNRs. This will be beneficial in the molecule on-surface processing when the preparation of final unsubstituted hydrocarbon structure is desired., This work was supported by the National Science Center, Poland (2019/35/B/ST5/02666), and the EU Project PAMS (610446). A.G.L., D.S.P., and P.B. acknowledge the Spanish Agencia Estatal de Investigación (Grants MAT2016-78293-C6-4-R, PID2019-107338RB-C66, and FIS2017-83780-P), Dep. Educación of the Basque Government and UPV/EHU (Grant IT-756-13), and the European Union (EU) through Horizon 2020 (FET-Open project SPRING Grant 863098) for support.

Miniaturization of electronic circuits into the single-atom level requires novel approaches to characterize transport properties. Due to its unrivaled precision, scanning probe microscopy is regarded as the method of choice for local characterization of atoms and single molecules supported on surfaces. Here we investigate electronic transport along the anisotropic germanium (001) surface with the use of two-probe scanning tunneling spectroscopy and first-principles transport calculations. We introduce a method for the determination of the transconductance in our two-probe experimental setup and demonstrate how it captures energy-resolved information about electronic transport through the unoccupied surface states. The sequential opening of two transport channels within the quasi-one-dimensional Ge dimer rows in the surface gives rise to two distinct resonances in the transconductance spectroscopic signal, consistent with phase-coherence lengths of up to 50 nm and anisotropic electron propagation. Our work paves the way for the electronic transport characterization of quantum circuits engineered on surfaces., This work was supported by the FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (funded by the European Commission under contract number 610446), the Polish Ministry for Science and Higher Education from financial resources for science in 2013–2017 granted for an international co-financed project (contract number 2913/7.PR/2013/2) and the Spanish Ministerio de Economía y Competitividad (MINECO) (Grant Numbers MAT2016-78293-C6-4-R and FIS2017-83780-P). M.K. acknowledges financial support received from the Polish Ministry of Science and Higher Education, contract number 0341/IP3/2016/74.

Synthesis of a triporous nanographene with 102 sp2 carbon atoms by combining solution and surface chemistry., The synthesis of porous nanographenes is a challenging task for solution chemistry, and thus, on-surface synthesis provides an alternative approach. Here, we report the synthesis of a triporous nanographene with 102 sp2 carbon atoms by combining solution and surface chemistry. The carbon skeleton was obtained by Pd-catalyzed cyclotrimerization of arynes in solution, while planarization of the molecule was achieved through two hierarchically organized on-surface cyclodehydrogenation reactions, intra- and inter-blade. Remarkably, the three non-planar [14]annulene pores of this nanographene further evolved at higher temperatures showing interesting intra-porous on-surface reactivity.

The shot noise of the current $I$ through junctions to single trioxatriangulenium cations (TOTA$^+$) on Au(111) is measured with a low temperature scanning tunneling microscope using Au tips. The noise is significantly reduced compared to the Poisson noise power of $2eI$ and varies linearly with the junction conductance. The data are consistent with electron transmission through a single spin-degenerate transport channel and show that TOTA$^+$ in a Au contact does not acquire an unpaired electron. Ab initio calculations reproduce the observations and show that the current involves the lowest unoccupied orbital of the molecule and tip states close to the Fermi level., Comment: 5 pages, 5 figures

Electrons in graphene can show diffraction and interference phenomena fully analogous to light thanks to their Dirac-like energy dispersion. However, it is not clear how this optical analogy persists in nanostructured graphene, for example, with pores. Nanoporous graphene (NPG) consisting of linked graphene nanoribbons has recently been fabricated using molecular precursors and bottom-up assembly (Moreno et al. Science 2018, 360, 199). We predict that electrons propagating in NPG exhibit the interference Talbot effect, analogous to photons in coupled waveguides. Our results are obtained by parameter-free atomistic calculations of real-sized NPG samples based on seamlessly integrated density functional theory and tight-binding regions. We link the origins of this interference phenomenon to the band structure of the NPG. Most importantly, we demonstrate how the Talbot effect may be detected experimentally using dual-probe scanning tunneling microscopy. Talbot interference of electron waves in NPG or other related materials may open up new opportunities for future quantum electronics, computing, or sensing.

Motivated by the need to control the resistance of metal-graphene interfaces, we have simulated the structural and transport properties of edge contacts upon their formation. Our first-principles calculations reveal that the contacts evolve in a nontrivial way depending on the type of metal and the chemical contamination of the graphene edge. In particular, our results indicate that the origin of the low experimental resistance of chromium-graphene edge contacts is related to their weaker variation upon contamination and defect formation. In summary, by analyzing the distance dependence of the graphene-metal interaction and the relation between the reactivity and forces at the graphene edge, we shed new light on the mechanisms responsible for the diverse performance of experimentally fabricated graphene edge contacts.

We present an ab initio method to calculate elastic quantum transport at the nanoscale. The method is based on a combination of density functional theory using plane wave nonlocal pseudopotentials and the use of auxiliary periodic boundary conditions to obtain the scattering states. The method can be applied to any applied bias voltage and the charge density and potential profile can either be calculated self-consistently, or using an approximated self-consistent field (SCF) approach. Based on the scattering states one can straightforwardly calculate the transmission coefficients and the corresponding electronic current. The overall scheme allows us to obtain accurate and numerically stable solutions for the elastic transport, with a computational time similar to that of a ground state calculation. This method is particularly suitable for calculations of tunneling currents through vacuum, that some of the nonequilibrium Greens function (NEGF) approaches based on atomic basis sets might have difficulty to deal with. Several examples are provided using this method from electron tunneling, to molecular electronics, to electronic devices: (i) On a Au nanojunction, the tunneling current dependence on the electrode–electrode distance is investigated. (ii) The tunneling through field emission resonances (FERs) is studied via an accurate description of the surface vacuum states. (iii) Based on quantum transport calculations, we have designed a molecular conformational switch, which can turn on and off a molecular junction by applying a perpendicular electric field. (iv) Finally, we have used the method to simulate tunnel field-effect transistors (TFETs) based on two-dimensional transition-metal dichalcogenides (TMDCs), where we have studied the performance and scaling limits of such nanodevices and proposed atomic doping to enhance the transistor performance.

The challenge of synthesizing graphene nanoribbons (GNRs) with atomic precision is currently being pursued along a one-way road, based on the synthesis of adequate molecular precursors that react in predefined ways through self-assembly processes. The synthetic options for GNR generation would multiply by adding a new direction to this readily successful approach, especially if both of them can be combined. We show here how GNR synthesis can be guided by an adequately nanotemplated substrate instead of by the traditionally designed reactants. The structural atomic precision, unachievable to date through top-down methods, is preserved by the self-assembly process. This new strategy’s proof-of-concept compares experiments using 4,4′′-dibromo-para-terphenyl as a molecular precursor on flat Au(111) and stepped Au(322) substrates. As opposed to the former, the periodic steps of the latter drive the selective synthesis of 6 atom-wide armchair GNRs, whose electronic properties have been further characterized in detail by scanning tunneling spectroscopy, angle resolved photoemission, and density functional theory calculations., The project leading to this publication has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No 635919), from the Spanish Ministry of Economy, Industry and Competitiveness (MINECO, Grant No. MAT2016-78293-C6), from the Basque Government (Grant No. IT-621-13), from the regional Government of Aragon (RASMIA Project), and from the University of Padova (Grant CPDA154322, Project AMNES).

Nanosize pores can turn semimetallic graphene into a semiconductor and, from being impermeable, into the most efficient molecular-sieve membrane. However, scaling the pores down to the nanometer, while fulfilling the tight structural constraints imposed by applications, represents an enormous challenge for present top-down strategies. Here we report a bottom-up method to synthesize nanoporous graphene comprising an ordered array of pores separated by ribbons, which can be tuned down to the 1-nanometer range. The size, density, morphology, and chemical composition of the pores are defined with atomic precision by the design of the molecular precursors. Our electronic characterization further reveals a highly anisotropic electronic structure, where orthogonal one-dimensional electronic bands with an energy gap of ∼1 electron volt coexist with confined pore states, making the nanoporous graphene a highly versatile semiconductor for simultaneous sieving and electrical sensing of molecular species., This research was funded by the Centres de Recerca de Catalunya Programme–Generalitat de Catalunya, the Xunta de Galicia (Centro singular de investigacion de Galicia accreditation 2016–2019, ED431G/09), and the European Regional Development Fund. This research was supported by the Spanish Ministry of Economy and Competitiveness (under contract no. MAT2016-78293-C6-2-R, MAT2016-78293-C6-3-R, MAT2016-78293-C6-4-R, and MAT2016-75952-R and Severo Ochoa no. SEV-2013-0295); the Secretariat for Universities and Research, Knowledge Department of the Generalitat de Catalunya 2014 SGR 715, 2014 SGR 56, and 2017 SGR 827; the Basque Department of Education (contract no. PI-2016-1-0027); and the European Union’s Horizon 2020 research and innovation program under grant agreement 696656. C.M. was supported by the Agency for Management of University and Research grants (AGAUR) of the Catalan government through the FP7 framework program of the European Commission under Marie Curie COFUND action 600385.

Here we show scanning tunneling microscopy (STM), noncontact atomic force microscopy (AFM), and inelastic electron tunneling spectroscopy (IETS) measurements on an organic molecule with a CO-terminated tip at 5 K. The high-resolution contrast observed simultaneously in all channels unambiguously demonstrates the common imaging mechanism in STM/AFM/IETS, related to the lateral bending of the CO-functionalized tip. The IETS spectroscopy reveals that the submolecular contrast at 5 K consists of both renormalization of vibrational frequency and variation of the amplitude of the IETS signal. This finding is also corroborated by first principles simulations. We extend accordingly the probe-particle AFM/STM/IETS model to include these two main ingredients necessary to reproduce the high-resolution IETS contrast. We also employ the first principles simulations to get more insight into a different response of frustrated translation and rotational modes of the CO tip during imaging.

We show that the chemical inhomogeneity in ternary three-dimensional topological insulators preserves the topological spin texture of their surface states against a net surface magnetization. The spin texture is that of a Dirac cone with helical spin structure in the reciprocal space, which gives rise to spin-polarized and dissipation-less charge currents. Thanks to the nontrivial topology of the bulk electronic structure, this spin texture is robust against most types of surface defects. However, magnetic perturbations break the time-reversal symmetry, enabling magnetic scattering and loss of spin coherence of the charge carriers. This intrinsic incompatibility precludes the design of magnetoelectronic devices based on the coupling between magnetic materials and topological surface states. We demonstrate that the magnetization coming from individual Co atoms deposited on the surface can disrupt the spin coherence of the carriers in the archetypal topological insulator Bi2Te3, while in Bi2Se2Te the spin t...

A freestanding molecular wire is placed vertically on Au(111) using a platform molecule and contacted by a scanning tunneling microscope. Despite the simplicity of the single-molecule junction, its conductance G reproducibly varies in a complex manner with the electrode separation. Transport calculations show that G is controlled by a deformation of the molecule, a symmetry mismatch between the tip and molecule orbitals, and the breaking of a C≡C triple in favor of a Au─C─C bond. This tip-controlled reversible bond formation or rupture alters the electronic spectrum of the junction and the states accessible for transport, resulting in an order of magnitude variation of the conductance.

The conductances of molecules physisorbed to Au(1 1 1) via an extended [Formula: see text] system are probed with the tip of a low-temperature scanning tunneling microscope to maximize the control of the junction geometry. Inert hydrogen, methyl, and reactive propynyl subunits were attached to the platform and stand upright. Because of their different reactivities, either non-bonding (hydrogen and methyl) or bonding (propynyl) tip-molecule contacts are formed. The conductances exhibit little scatter between different experimental runs on different molecules, display distinct evolutions with the tip-subunit distance, and reach contact values of 0.003-0.05 G 0. For equal tip-platform distances the contact conductance of the inert methyl is close to that of the reactive propynyl. Under further compression, the inert species, hydrogen and methyl, are found to be better conductors. This shows that the current flow is not directly correlated with the chemical interaction. Atomistic calculations for the methyl case reproduce the conductance evolution and reveal the role of the junction geometry, forces and orbital symmetries at the tip-molecule interface. The current flow is controlled by orbital symmetries at the electrode interfaces rather than by the energy alignment of the molecular orbitals and electrode states. Functionalized molecular platforms thus open new ways to control and engineer electron conduction through metal-molecule interfaces at the atomic level.

A set of density-functional theory based tools is employed to elucidate the influence of chemical and surface-induced changes on the core level shifts of X-ray photoelectron spectroscopy experiments. The capabilities of our tools are demonstrated by analyzing the origin of an unpredicted component in the N 1s core level spectra of metal phthalocyanine molecules (in particular ZnPc) adsorbed on Cu(110). We address surface induced effects, such as splitting of the lowest unoccupied molecular orbital or local electrostatic effects, demonstrating that these cannot account for the huge core level shift measured experimentally. Our calculations also show that, when adsorbed at low temperatures, these molecules might capture hydrogen atoms from the surface, giving rise to hydrogenated molecular species and, consequently, to an extra component in the molecular core level spectra. Only upon annealing, and subsequent hydrogen release, would the molecules recover their nominal structural and electronic properties., The authors thank L. Floreano and M. Blanco-Rey for useful discussions, and acknowledge support from the Basque Departamento de Educacion and UPV/EHU (Grants No. PI-2016-1-0027, IT-756-13 and IT-621-13), the Spanish Ministry (Grants No. MAT2016-78293-C6-4-R, MAT2016-78293-C6-5-R, and FIS2016-75862-P), and the European Union FP7-ICT Integrated Project PAMS under Contract No. 610446.

The synthesis of graphene nanoislands with tailored quantum properties requires an atomic control of the morphology and crystal structure. As one reduces their size down to the nanometer scale, domain boundary and edge energetics, as well as nucleation and growth mechanisms impose different stability and kinetic landscape from that at the microscale. This offers the possibility to synthesize structures that are exclusive to the nanoscale, but also calls for fundamental growth studies in order to control them. By employing high-resolution scanning tunneling microscopy we elucidate the atomic stacking configurations, domain boundaries, and edge structure of graphene nanoislands grown on Ni(1 1 1) by CVD and post-annealed at different temperatures. We find a non-conventional multistep mechanism that separates the thermal regimes for growth, edge reconstruction, and final stacking configuration, leading to nanoisland morphologies that are incompatible with their stacking symmetry. Whole islands shift their stacking configuration during cooling down, and others present continuous transitions at the edges. A statistical analysis of the domain structures obtained at different annealing temperatures reveals how polycrystalline, ill-defined structures heal into shape-selected islands of a single predominant stacking. The high crystallinity and the control on morphology and edge structure makes these graphene nanoislands ideal for their application in optoelectronics and spintronics.

Scattering of electrons by localized spins is the ultimate process enabling detection and control of the magnetic state of a spin-doped material. At the molecular scale, scattering is mediated by the orbitals hosting the spin. Here we report the selective excitation of a molecular spin by tunneling through different molecular orbitals. Spatially resolved tunneling spectra on iron-porphyrins reveal that the inelastic spin excitation extends beyond the iron site, changing shape and symmetry along the molecule. Combining density functional theory simulations with a phenomenological scattering model, we show that the extension and lineshape of the inelastic signal are due to excitation pathways assisted by different frontier orbitals. By selecting the intramolecular site for electron injection, the relative weight of iron and pyrrole orbitals in the tunneling process is modified. Thus, the excitation mechanism, reflected by its spectral lineshape, depends on the degree of localization and energy alignment of the chosen molecular orbital., This work has been funded by the COST 15128 Molecular Spintronics project, by Marie Curie IF ARTE, by the Spanish Ministerio de Economía y Competitividad (MINECO) through the cooperative grant No. MAT2016-78293 and grant No. FIS2016-75862-P, and by the Basque Government (Dep. Industry, Grant PI-2015-1-42, Dep. Education, Grant PI-2016-1-27 and Grant IT-756-13), the EU project PAMS (610446), and the European Regional Development Fund (ERDF).

Large aromatic carbon nanostructures are cornerstone materials due to their increasingly active role in functional devices, but their synthesis in solution encounters size and shape limitations. New on-surface strategies facilitate the synthesis of large and insoluble planar systems with atomic-scale precision. While dehydrogenation is usually the chemical zipping reaction building up large aromatic carbon structures, mostly benzenoid structures are being produced. Here, we report on a new cyclodehydrogenation reaction transforming a sterically stressed precursor with conjoined cove regions into planar carbon platform by incorporating azulene moieties in their interior. Submolecular resolution STM is used to characterize this exotic large polycyclic aromatic compound on Au(111) yielding unprecedented insight into a dehydrogenative intramolecular aryl-aryl coupling reaction. The resulting polycyclic aromatic carbon structure shows a [18]annulene core hosting peculiar pore states confined at the carbon cavity., Comment: Accepted for publication in Nanoletters

Graphene nanoribbons (GNRs) are promising components in future nanoelectronics due to the large mobility of graphene electrons and their tunable electronic band gap in combination with recent experimental developments of on-surface chemistry strategies for their growth. Here, we explore a prototype 4-terminal semiconducting device formed by two crossed armchair GNRs (AGNRs) using state-of-the-art first-principles transport methods. We analyze in detail the roles of intersection angle, stacking order, inter-GNR separation, GNR width, and finite voltages on the transport characteristics. Interestingly, when the AGNRs intersect at θ=60°, electrons injected from one terminal can be split into two outgoing waves with a tunable ratio around 50% and with almost negligible back-reflection. The split electron wave is found to propagate partly straight across the intersection region in one ribbon and partly in one direction of the other ribbon, i.e., in analogy with an optical beam splitter. Our simulations further identify realistic conditions for which this semiconducting device can act as a mechanically controllable electronic beam splitter with possible applications in carbon-based quantum electronic circuits and electron optics. We rationalize our findings with a simple model suggesting that electronic beam splitters can generally be realized with crossed GNRs., The authors acknowledge financial support from FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (funded by the European Commission under Contract No. 610446), the Spanish Ministerio de Economia y Competitividad (MINECO) (Grant No. MAT2013-46593-C6-2-P), the Basque Departamento de Educacion, and the UPV/EHU (Grant No. IT-756-13). N.P. acknowledges financial support from No. EU H2020 Project No. 676598, “MaX: Materials at the eXascale” Center of Excellence in Supercomputing Applications.

We present a practical approach to calculate the complex band structure of an electrode for quantum transport calculations. This method is designed for plane wave based Hamiltonian with nonlocal pseudopotentials, although it can be used for any Hamiltonian that has a large (>100,000) basis set. Our method is particularly useful for the auxiliary periodic boundary condition transport calculation. The complex band structures of copper and gold nanowires, and bulk gold electrodes are presented. The nanowire wave functions are analyzed using effective mass pictures.

In this work, we present a detail description of a self-consistent ab initio procedure for modeling the non-equilibrium elastic electron transport through a nanostructure coupled to semi-infinite external electrodes and with a finite applied bias voltage. Our method is based on the approach presented in Wang [L.W. Wang, Phys. Rev. B 72 (2005) 045417] and Garcia-Lekue and Wang [A. Garcia-Lekue, L.W. Wang, Phys. Rev. B 72 (2005) 045417], where the coherent quantum transport is calculated by means of the exact scattering states with plane wave non-local pseudopotentials, using periodic boundary conditions. In our previous calculation, the charge density and the electron potential were not calculated self-consistently even for a finite bias problem. Here, we introduce an iterative approach to obtain the self-consistent charge density and potential. Our self-consistent algorithm employs Pulay–Kerker mixing scheme and is found to provide fast, accurate and stable numerical solutions of the non-equilibrium problem. Details of the method are presented thus the readers can implement the method easily. As an illustration of our method, non-equilibrium transport properties for a model system made up of a di-thiol-benzene molecule connected by two Cu wires are calculated.

Controlling the strength of the coupling between organic molecules and single atoms provides a powerful tool for tuning electronic properties of single-molecule devices. Here, using scanning tunneling microscopy and spectroscopy (STM/STS) supported by theoretical modeling, we study the interaction of a planar organic molecule (trinaphthylene) with a hydrogen-passivated Ge(001):H substrate and a single dangling bond quantum dot on that surface. The electronic structure of the molecule adsorbed on the hydrogen-passivated surface is similar to the gas phase structure and the measurements show that HOMO and LUMO states contribute to the STM filled and empty state images, respectively. Furthermore, we show that the electronic properties are not significantly affected when the molecule is attached to the single dangling bond, which is in contrast with the strong interaction of the molecule with a dangling bond dimer. Our results show that the dangling bond quantum dots could stabilize organic molecules on a hydrogenated semiconductor without affecting their originally designed gas phase electronic properties. Together with the ability to laterally manipulate the molecules on the surface, this will be advantageous in the construction of single-molecule devices, where the coupling and positioning of the molecules on the substrate could be tuned by a proper design of the surface quantum dot arrays, comprising both single and dimerized dangling bonds., This work was supported by the Polish Ministry for Science and Higher Education, contract no. 0322/IP3/2013/72. The experiment was carried out using equipment purchased with financial support from the European Regional Development Fund within the framework of the Polish Innovation Economy Operational Program (contract no. POIG.02.01.00-12-023/08). ME, AGL and DSP acknowledge funding by the FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (funded by the European Commission under contract No. 610446), the Spanish Ministerio de Economia y Competitividad (MINECO) (Grant No. MAT2013-46593-C6-2-P) and the Basque Department of Education and the UPV/EHU (Grant No. IT-756-13). MK acknowledges financial support received from the Foundation for Polish Science (FNP). SG acknowledges the support from the National Science Centre, Poland (2014/15/D/ST3/02975). AME acknowledges the MINECO (Grant No. CTQ2013-42106-P). HK acknowledges the A*STAR Computational Resource Centre (A*CRC) for the computational resources and support. RZ acknowledges support received from KNOW (scholarship KNOW/44/SS/RZ/2015).

Construction of single-molecule electronic devices requires the controlled manipulation of organic molecules and their properties. This could be achieved by tuning the interaction between the molecule and individual atoms by local “on-surface” chemistry, i.e., the controlled formation of chemical bonds between the species. We demonstrate here the reversible attachment of a planar conjugated polyaromatic molecule to a pair of unpassivated dangling bonds on a hydrogenated Ge(001):H surface via a Diels–Alder [4+2] addition using the tip of a scanning tunneling microscope (STM). Due to the small stability difference between the covalently bonded and a nearly undistorted structure attached to the dangling bond dimer by long-range dispersive forces, we show that at cryogenic temperatures the molecule can be switched between both configurations. The reversibility of this covalent bond forming reaction may be applied in the construction of complex circuits containing organic molecules with tunable properties., This work was supported by the National Science Centre, Poland (2014/15/D/ST3/02975). The experiment was carried out using equipment purchased with financial support from the European Regional Development Fund within the framework of the Polish Innovation Economy Operational Program (contract no. POIG.02.01.00-12-023/08). ME, AGL and DSP acknowledge funding by the FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (funded by the European Commission under contract no. 610446), the Spanish Ministerio de Economia y Competitividad (MINECO) (Grant No. MAT2013-46593-C6-2-P) and the Basque Department of Education and the UPV/EHU (Grant No. IT-756-13). MK acknowledges financial support received from the Foundation for Polish Science (FNP). SG acknowledges the support from the Polish Ministry for Science and Higher Education, contract no. 0322/IP3/2013/72. AME acknowledges the MINECO (Grant No. CTQ2013-42106-P). HK acknowledges the A*STAR Computational Resource Centre (A*CRC) for the computational resources and support. CJ acknowledges the MANA NEXT financial support during this work. RZ acknowledges support received from KNOW (scholarship KNOW/44/SS/RZ/2015).

arXiv:1609.03842v1, We have theoretically investigated the electronic properties of neutral and n-doped dangling bond (DB) quasi-one-dimensional structures (lines) in the Si(001):H and Ge(001):H substrates with the aim of identifying atomic-scale interconnects exhibiting metallic conduction for use in on-surface circuitry. Whether neutral or doped, DB lines are prone to suffer geometrical distortions or have magnetic ground states that render them semiconducting. However, from our study we have identified one exception—a dimer row fully stripped of hydrogen passivation. Such a DB-dimer line shows an electronic band structure which is remarkably insensitive to the doping level, and thus, it is possible to manipulate the position of the Fermi level, moving it away from the gap. Transport calculations demonstrate that the metallic conduction in the DB-dimer line can survive thermally induced disorder but is more sensitive to imperfect patterning. In conclusion, the DB-dimer line shows remarkable stability to doping and could serve as a one-dimensional metallic conductor on n-doped samples., This work is funded by the FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (funded by the European Commission under contract No. 610446). ME, PB, TF, AGL, and DSP also acknowledge support from the Spanish Ministerio de Economía y Competitividad (MINECO) (Grant No. MAT2013-46593-C6-2-P) and the Basque Dep. de Educación and the UPV/EHU (Grant No. IT-756-13).

Due to the importance of scanning tunneling microscopy for atomic scale research the anomalously high corrugation values on close packed metal surfaces have been the subject of debate and extensive theoretical work in the past two decades. To date it remained unclear, how surface properties and electronic structures are related to forces and interactions. Here we show that elasticity, in particular the high elasticity of aluminum surfaces, enhances corrugation by up to one order of magnitude. The parameterfree simulations yield correct results for all close packed metal surfaces and emphasize the importance of atomic relaxations for chemisorption processes. � 2004 Elsevier B.V. All rights reserved. It is an astonishing fact that every second paper on surface chemistry or physics today is based on scanning tunneling microscopy (STM) experiments. The versatility of STM mostly derives from its ability to probe into most of the surface properties at the atomic scale. It has been shown conclusively, that it cannot only resolve atomic positions, but also their chemical nature [1], their chemical environment [2], magnetization [3], and even two dimensional surface states [4]. By contrast, STM theory has long been focused on electronic surface properties alone [5]. The method, even though it is generally reliable, involves as free parameter the distance between the two surfaces, which can be used to adjust simulated density contours to constant current linescans. In the estimates the actual distance between the atomic cores of surface and tip atoms varies widely from less than 300 to more than 1000 pm [6,7]. This distance range covers more than seven orders of magnitude in the tunnel

This work is licensed under a Creative Commons Attribution 4.0 International License., We present a combined experimental and theoretical study of the electronic properties of close-spaced dangling-bond (DB) pairs in a hydrogen-passivated Si(001):H p-doped surface. Two types of DB pairs are considered, called >cross> and >line> structures. Our scanning tunneling spectroscopy (STS) data show that, although the spectra taken over different DBs in each pair exhibit a remarkable resemblance, they appear shifted by a constant energy that depends on the DB-pair type. This spontaneous asymmetry persists after repeated STS measurements. By comparison with density functional theory (DFT) calculations, we demonstrate that the magnitude of this shift and the relative position of the STS peaks can be explained by distinct charge states for each DB in the pair. We also explain how the charge state is modified by the presence of the scanning tunneling microscopy (STM) tip and the applied bias. Our results indicate that, using the STM tip, it is possible to control the charge state of individual DBs in complex structures, even if they are in close proximity. This observation might have important consequences for the design of electronic circuits and logic gates based on DBs in passivated silicon surfaces., This work is funded by the FP7 FET-ICT “Planar Atomic and Molecular Scale devices” (PAMS) project (funded by the European Commission under contract No. 610446). ME, TF, AGL and DSP also acknowledge support from the Spanish Ministerio de Economía y Competitividad (MINECO) (Grant No. MAT2013-46593-C6-2-P) and the Basque Dep. de Educación and the UPV/EHU (Grant No. IT-756-13). MK acknowledges financial support received from the Polish National Science Centre for preparation of his PhD dissertation (decision number: DEC-2013/08/T/ST3/00047) and from the Foundation for Polish Science (FNP).

Quantum Monte Carlo simulations of interacting electrons in solids often use Slater-Jastrow trial wave functions. The Jastrow function takes into account correlations between pairs of electrons. In simulations of solids, it is common to use a Jastrow function which is both homogeneous and isotropic. The use of a homogeneous and isotropic Jastrow factor is questionable in applications to systems with strong density inhomogeneities, such as surfaces and multilayers. By generalizing the original derivation of the RPA Jastrow factor for the homogeneous electron gas [Gaskell] to inhomogeneous systems we derive an scheme for generating inhomogeneous and anisotropic Jastrow factors for use in nonuniform systems, from the non-interacting static structure factor and density of the system. We discuss aspects of our scheme and illustrate it with a first application to an inhomogeneous electron gas., Comment: 9 pages, 2 figures, to appear in Comp. Mater. Sci

We investigate the scattering of surface electrons by the edges of graphene islands grown on Ni(111). By combining local tunneling spectroscopy and ab initio electronic structure calculations we find that the hybridization between graphene and Ni states results in strongly reflecting graphene edges. Quantum interference patterns formed around the islands reveal a spin-dependent scattering of the Shockley bands of Ni, which we attribute to their distinct coupling to bulk states. Moreover, we find a strong dependence of the scattering amplitude on the atomic structure of the edges, depending on the orbital character and energy of the surface states. © 2014 American Physical Society., We acknowledge support from the Basque Departamento de Educación, UPV/EHU (Grants No. IT-366-07 and No. IT-756-13), the Spanish Ministerio de Ciencia e Innovación (Grants No. FIS2010-19609-C02-00, and No. MAT2010-15659), the ETORTEK program funded by the Basque Departamento de Industria, the European Research Council (StG 203239 NOMAD), and Agència de Gestió d’Ajuts Universitaris i de Recerca (2009 SGR 695). A. M. acknowledges funding from the Ramón y Cajal Fellowship program.

We present a unique remodeling of flat copper terraces induced by organic molecules. In particular, we show how metal-phthalocyanines (MPc, M = Zn and Cu) tailor the formation of regular arrays of Cu nanostripes on its (110) surface. The MPc mediated reshaping of Cu(110) terraces is found to involve a massive reorganization of Cu adatoms, at variance with the conventional changes of metal reconstructions upon molecular adsorption observed so far. By combining experimental and theoretical surface science techniques, we reveal the key role played by the metal atom at the molecular center in reshaping the terrace structure. Moreover, we demonstrate that extra Cu adatoms surrounding the molecules stabilize the molecular decoration of the Cu nanostripes. The massive surface reshaping is thus due to molecular mediated unidirectional blocking of adatom surface diffusion followed by adatom capture and accumulation., We acknowledge support from the Basque Department of Education, UPV/EHU (Grants IT-756-13 and IT-621-13), the Spanish Government (Grants FIS2010-19609-C02-01, MAT2010-21156-C03-01 and -C03-03, and PIB2010US-00652), and the European Union FP7-ICT Integrated Project PAMS under contract No. 610446.