178 results on '"Aprataxin"'
Search Results
2. DNA repair mechanisms in dividing and non-dividing cells
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Iyama, Teruaki and Wilson, David M
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Genetics ,Stem Cell Research ,Stem Cell Research - Nonembryonic - Human ,Cancer ,Neurosciences ,1.1 Normal biological development and functioning ,2.1 Biological and endogenous factors ,Aetiology ,Underpinning research ,Generic health relevance ,Neurological ,Animals ,DNA ,DNA Damage ,DNA Repair ,Disease Models ,Animal ,Humans ,Neurons ,O(6)-Methylguanine-DNA Methyltransferase ,Pyrimidine Dimers ,6-4PPs ,8-oxoguanine DNA glycosylase ,AOA1 ,AP ,AP endonuclease 1 ,APE1 ,APTX ,ATM ,CPDs ,CS ,CSR ,Cockayne syndrome ,DAR ,DNA double strand break repair ,DNA polymerase β ,DNA repair ,DNA single strand break repair ,DNA single strand breaks ,DNA-PKcs ,DNA-dependent protein kinase catalytic subunit ,DSBR ,Dividing and non-dividing ,ERCC1 ,Endogenous DNA damage ,FEN1 ,GG-NER ,HNPCC ,HR ,IR ,MAP ,MCSZ ,MGMT ,MMR ,MPG ,MUTYH ,MUTYH-associated polyposis ,N-methylpurine-DNA glycosylase ,NEIL1 ,NER ,NHEJ ,NSC ,NTH1 ,Neural cells ,Neurological disorder ,O(6)-methylguanine-DNA methyltransferase ,OGG1 ,PARP1 ,PCNA ,PG ,PNKP ,PUA ,Pol β ,RFC ,RNA polymerase ,RNAP ,RPA ,SCAN1 ,SCID ,SDSA ,SSA ,SSBR ,SSBs ,TC-NER ,TDP1 ,TFIIH ,TOP1 ,TTD ,Top1 cleavage complex ,Top1cc ,UNG ,X-ray repair cross-complementing protein 1 ,XP ,XRCC1 ,aprataxin ,apurinic/apyrimidinic ,ataxia telangiectasia mutated ,ataxia with ocular motor apraxia 1 ,class switch recombination ,cyclobutane pyrimidine dimers ,dRP ,deoxyribose-5-phosphate ,endonuclease III-like 1 ,endonuclease VIII-like 1 ,excision repair cross complementing 1 ,flap endonuclease 1 ,global genome-NER ,hereditary nonpolyposis colorectal cancer ,homologous recombination ,human mutY homolog ,ionizing radiation ,microcephaly with early-onset ,intractable seizures and developmental delay ,mismatch repair ,neural stem cells ,nonhomologous end joining ,nucleotide excision repair ,phospho-α ,β-unsaturated aldehyde ,phosphoglycolate ,poly(ADP-ribose) polymerase-1 ,polynucleotide kinase 3′-phosphatase ,proliferating cellular nuclear antigen ,pyrimidine-(6 ,4)-pyrimidone photoproducts. ,replication factor C ,replication protein A ,severe combined immunodeficient ,single-strand annealing ,spinocerebellar ataxia with axonal neuropathy-1 ,synthesis-dependent strand annealing ,topoisomerase 1 ,transcription domains-associated repair ,transcription factor II H ,transcription-coupled NER ,trichothiodystrophy ,tyrosyl-DNA phosphodiesterase 1 ,uracil-DNA glycosylase ,xeroderma pigmentosum ,Biochemistry and Cell Biology ,Developmental Biology - Abstract
DNA damage created by endogenous or exogenous genotoxic agents can exist in multiple forms, and if allowed to persist, can promote genome instability and directly lead to various human diseases, particularly cancer, neurological abnormalities, immunodeficiency and premature aging. To avoid such deleterious outcomes, cells have evolved an array of DNA repair pathways, which carry out what is typically a multiple-step process to resolve specific DNA lesions and maintain genome integrity. To fully appreciate the biological contributions of the different DNA repair systems, one must keep in mind the cellular context within which they operate. For example, the human body is composed of non-dividing and dividing cell types, including, in the brain, neurons and glial cells. We describe herein the molecular mechanisms of the different DNA repair pathways, and review their roles in non-dividing and dividing cells, with an eye toward how these pathways may regulate the development of neurological disease.
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- 2013
3. Unexpectedly mild phenotype in an ataxic family with a two-base deletion in the APTX gene.
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Hirano, Makito, Matsumura, Ryusuke, Nakamura, Yusaku, Saigoh, Kazumasa, Sakamoto, Hikaru, Ueno, Shuichi, Inoue, Hiroya, and Kusunoki, Susumu
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ATAXIA , *PHENOTYPES , *ENTEROTYPES , *GENETIC pleiotropy , *GENOTYPES - Abstract
Introduction Early onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH)/ataxia with oculomotor apraxia 1 (AOA1) is an autosomal recessive disorder caused by mutations in the APTX gene. In contrast to the recent progress on the molecular mechanism of aprataxin in DNA repair, the genotype and phenotype correlation has not been fully established. A previous study demonstrated that patients with truncation mutations had earlier onset of disease than those with missense mutations Methods Genomic DNA analysis was performed in a consanguineous family with relatively late-onset EAOH/AOA1. In addition, mRNA and protein analyses were performed. Results The proband of the family had a homozygous two-base deletion in the middle of exon 3. Reverse-transcriptase–polymerase-chain-reaction (RT-PCR) assays of mRNA revealed an aberrantly spliced mRNA with a cryptic splice site located four bases upstream of the deletion site. The newly identified mRNA retained a frameshift mutation and encoded a truncated protein. Immunoblot analysis did not detect the truncated protein in the patient's fibroblasts, possibly because it was unstable. Conclusions Although patients with truncation mutations had an earlier onset of disease, our findings suggest that patients with a truncation mutation resulting in an undetectable protein level can also have a later onset of disease. [ABSTRACT FROM AUTHOR]
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- 2017
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4. Ataxia with oculomotor apraxia type 1 associated with mutation in the APTX gene: A case study and literature review.
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Albaradie, Raidah, Alharbi, Alanoud, Alsaffar, Gada, Alhamad, Bayader, and Bashir, Shahid
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APRAXIA , *FRIEDREICH'S ataxia , *ATAXIA , *SPINOCEREBELLAR ataxia , *CEREBELLAR ataxia , *GENETIC mutation , *CEREBELLUM degeneration - Abstract
Cerebellar ataxia is a disorder characterized by a broad spectrum of phenotypes. Ataxia with oculomotor apraxia type 1 (AOA1) is an autosomal recessive disease presenting with early-onset and slowly progressing cerebellar ataxia, areflexia and peripheral axonal neuropathy. Mutations in the APTX gene c.751C>T p.(His251Tyr) were detected with probable homozygosity in the APTX gene (chromosome 9) that encodes a nuclear protein called aprataxin that is involved in DNA repair. AOA1 also contributes to neuronal development and function. Ocular apraxia is most prominent in the early stages of the disease, while hypoalbuminemia, hypercholesterolemia and cognitive impairment are common symptoms in the adult stage. The present study reported the clinical features of an 8-year-old female patient with mutations in the APTX gene and discussed the differential diagnosis from other forms of hereditary ataxia. [ABSTRACT FROM AUTHOR]
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- 2022
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5. The scaffold protein XRCC1 stabilizes the formation of polβ/gap DNA and ligase IIIα/nick DNA complexes in base excision repair
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Melike Çağlayan and Qun Tang
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Scaffold protein ,SEC, size-exclusion chromatography ,SN-BER, single-nucleotide BER ,DNA Repair ,DNA polymerase ,Tdp1, tyrosyl-DNA phosphodiesterase 1 ,DNA ligase IIIα ,Biochemistry ,base excision repair ,AP, apurinic/apyrimidinic ,APE1, AP endonuclease 1 ,APTX, aprataxin ,CHO, Chinese hamster ovary ,XRCC1 ,chemistry.chemical_compound ,DNA Ligase ATP ,Humans ,NTD, N-terminal domain ,LB, Lysogeny Broth ,Molecular Biology ,BER, base excision repair ,DNA Polymerase beta ,chemistry.chemical_classification ,Aprataxin ,DNA ligase ,BLI, BioLayer Interferometry ,biology ,Chemistry ,DNA polymerase β ,Cell Biology ,Processivity ,Base excision repair ,Surface Plasmon Resonance ,Cell biology ,Kinetics ,X-ray Repair Cross Complementing Protein 1 ,XRCC1, X-ray cross-complementing protein 1 ,biology.protein ,IPTG, isopropyl β-D-thiogalactoside ,SNP, single-nucleotide polymorphism ,5′-dRP, 5′-deoxyribose phosphate ,DNA ,Research Article ,X-ray cross-complementing protein 1 ,OGG1, 8-oxoguanine DNA glycosylase ,Protein Binding - Abstract
The base excision repair (BER) pathway involves gap filling by DNA polymerase (pol) β and subsequent nick sealing by ligase IIIα. X-ray cross-complementing protein 1 (XRCC1), a nonenzymatic scaffold protein, assembles multiprotein complexes, although the mechanism by which XRCC1 orchestrates the final steps of coordinated BER remains incompletely defined. Here, using a combination of biochemical and biophysical approaches, we revealed that the polβ/XRCC1 complex increases the processivity of BER reactions after correct nucleotide insertion into gaps in DNA and enhances the handoff of nicked repair products to the final ligation step. Moreover, the mutagenic ligation of nicked repair intermediate following polβ 8-oxodGTP insertion is enhanced in the presence of XRCC1. Our results demonstrated a stabilizing effect of XRCC1 on the formation of polβ/dNTP/gap DNA and ligase IIIα/ATP/nick DNA catalytic ternary complexes. Real-time monitoring of protein–protein interactions and DNA-binding kinetics showed stronger binding of XRCC1 to polβ than to ligase IIIα or aprataxin, and higher affinity for nick DNA with undamaged or damaged ends than for one nucleotide gap repair intermediate. Finally, we demonstrated slight differences in stable polβ/XRCC1 complex formation, polβ and ligase IIIα protein interaction kinetics, and handoff process as a result of cancer-associated (P161L, R194W, R280H, R399Q, Y576S) and cerebellar ataxia-related (K431N) XRCC1 variants. Overall, our findings provide novel insights into the coordinating role of XRCC1 and the effect of its disease-associated variants on substrate-product channeling in multiprotein/DNA complexes for efficient BER.
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- 2021
6. Diminished OPA1 expression and impaired mitochondrial morphology and homeostasis in Aprataxin-deficient cells
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Jin Zheng, Vilhelm A. Bohr, Mansour Akbari, and Deborah L. Croteau
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aptX ,Genome Integrity, Repair and Replication ,Mitochondrion ,Biology ,Oxidative Phosphorylation ,GTP Phosphohydrolases ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,Mitochondrial inner membrane fusion ,Mitophagy ,Genetics ,medicine ,Homeostasis ,Humans ,Spinocerebellar Ataxias ,Lymphocytes ,Oculomotor apraxia ,Cell Line, Transformed ,Oligonucleotide Array Sequence Analysis ,030304 developmental biology ,Aprataxin ,0303 health sciences ,Osteoblasts ,Gene Expression Profiling ,Nuclear Proteins ,medicine.disease ,Mitochondria ,Cell biology ,DNA-Binding Proteins ,Electron Transport Chain Complex Proteins ,Gene Expression Regulation ,Spinocerebellar ataxia ,Optic Atrophy 1 ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Ataxia with oculomotor apraxia type 1 (AOA1) is an early onset progressive spinocerebellar ataxia caused by mutation in aprataxin (APTX). APTX removes 5′-AMP groups from DNA, a product of abortive ligation during DNA repair and replication. APTX deficiency has been suggested to compromise mitochondrial function; however, a detailed characterization of mitochondrial homeostasis in APTX-deficient cells is not available. Here, we show that cells lacking APTX undergo mitochondrial stress and display significant changes in the expression of the mitochondrial inner membrane fusion protein optic atrophy type 1, and components of the oxidative phosphorylation complexes. At the cellular level, APTX deficiency impairs mitochondrial morphology and network formation, and autophagic removal of damaged mitochondria by mitophagy. Thus, our results show that aberrant mitochondrial function is a key component of AOA1 pathology. This work corroborates the emerging evidence that impaired mitochondrial function is a characteristic of an increasing number of genetically diverse neurodegenerative disorders.
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- 2019
7. Molecular underpinnings of Aprataxin RNA/DNA deadenylase function and dysfunction in neurological disease.
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Schellenberg, Matthew J., Tumbale, Percy P., and Williams, R. Scott
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DNA replication , *DNA repair , *PHYSIOLOGICAL effects of proteins , *DEADENYLATION , *DNA ligases , *RNA - Abstract
Eukaryotic DNA ligases seal DNA breaks in the final step of DNA replication and repair transactions via a three-step reaction mechanism that can abort if DNA ligases encounter modified DNA termini, such as the products and repair intermediates of DNA oxidation, alkylation, or the aberrant incorporation of ribonucleotides into genomic DNA. Such abortive DNA ligation reactions act as molecular checkpoint for DNA damage and create 5′-adenylated nucleic acid termini in the context of DNA and RNA-DNA substrates in DNA single strand break repair (SSBR) and ribonucleotide excision repair (RER). Aprataxin (APTX), a protein altered in the heritable neurological disorder Ataxia with Oculomotor Apraxia 1 (AOA1), acts as a DNA ligase “proofreader” to directly reverse AMP-modified nucleic acid termini in DNA- and RNA-DNA damage responses. Herein, we survey APTX function and the emerging cell biological, structural and biochemical data that has established a molecular foundation for understanding the APTX mediated deadenylation reaction, and is providing insights into the molecular bases of APTX deficiency in AOA1. [ABSTRACT FROM AUTHOR]
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- 2015
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8. Ribonucleotide triggered DNA damage and RNA-DNA damage responses.
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Wallace, Bret D and Williams, R Scott
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- 2014
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9. Immunological abnormalities in patients with early-onset ataxia with ocular motor apraxia and hypoalbuminemia
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Tomohiro Morio, Kohsuke Imai, Masaaki Konagaya, Yoshiteru Tamura, Hiroshi Matsumoto, Hideki Houzen, Shigeaki Nonoyama, Masatoshi Takagi, Osamu Onodera, Mitsuhiro Sakamoto, Akio Yokoseki, Hideaki Ishiguro, Tamaki Kato, Masaya Ogawa, Yasuhiro Hasegawa, Koyo Tsujikawa, and Osamu Kobayashi
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0301 basic medicine ,Adult ,Male ,Ataxia ,Adolescent ,Cerebellar Ataxia ,DNA Repair ,DNA repair ,Apraxias ,T-Lymphocytes ,Immunology ,aptX ,medicine.disease_cause ,Radiation Tolerance ,Hypogammaglobulinemia ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,medicine ,Immunology and Allergy ,Humans ,Hypoalbuminemia ,DNA Breaks, Single-Stranded ,Child ,Aprataxin ,Mutation ,business.industry ,Genetic Variation ,Nuclear Proteins ,Middle Aged ,medicine.disease ,DNA-Binding Proteins ,Genes, T-Cell Receptor ,030104 developmental biology ,Case-Control Studies ,Female ,medicine.symptom ,business ,CD8 ,030215 immunology - Abstract
Early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH) is a neurodegenerative disorder caused by mutation in the aprataxin (APTX)-coding gene APTX, which is involved in DNA single-strand break repair (SSBR). The neurological abnormalities associated with EAOH are similar to those observed in patients with ataxia-telangiectasia. However, the immunological abnormalities in patients with EAOH have not been described. In this study, we report that EAOH patients have immunological abnormalities, including lymphopenia; decreased levels of CD4+ T-cells, CD8+ T-cells, and B-cells; hypogammaglobulinemia; low T-cell recombination excision circles and kappa-deleting element recombination circles; and oligoclonality of T-cell receptor β-chain variable repertoire. These immunological abnormalities vary among the EAOH patients. Additionally, mild radiosensitivity in the lymphocytes obtained from the patients with EAOH was demonstrated. These findings suggested that the immunological abnormalities and mild radiosensitivity evident in patients with EAOH could be probably caused by the DNA repair defects.
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- 2020
10. A novel, ataxic mouse model of Ataxia Telangiectasia caused by a clinically relevant nonsense mutation
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Martin T. Egeland, Angelina S Norris, Molly Pind, Valentina Sanghez, Harvey Perez, Michelina Iacovino, Joaquín Madrenas, Karen L Vo, Peter J. McKinnon, Paul J. Mathews, Callan L Buechsenschuetz, Kotoka Nakamura, May F Abdallah, Geoffrey G. Hicks, Jose I Chavira, Richard A. Gatti, and Jeannie L Kim
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Male ,Cerebellum ,Mouse ,Neurodegenerative ,neuroscience ,Mice ,Purkinje Cells ,thymus ,2.1 Biological and endogenous factors ,Aetiology ,Biology (General) ,General Neuroscience ,General Medicine ,Null allele ,medicine.anatomical_structure ,Codon, Nonsense ,purkinje neurons ,Neurological ,Medicine ,Female ,Cerebellar atrophy ,medicine.symptom ,Research Article ,Ataxia ,cerebellum ,QH301-705.5 ,Science ,Nonsense mutation ,aptX ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Ataxia Telangiectasia ,Rare Diseases ,Atrophy ,Genetics ,medicine ,Animals ,cancer ,Codon ,mouse ,Aprataxin ,General Immunology and Microbiology ,Animal ,ataxia ,Neurosciences ,medicine.disease ,Brain Disorders ,Disease Models, Animal ,Nonsense ,nervous system ,Disease Models ,Ataxia-telangiectasia ,Biochemistry and Cell Biology ,Neuroscience - Abstract
Ataxia Telangiectasia (A-T) and Ataxia with Ocular Apraxia Type 1 (AOA1) are devastating neurological disorders caused by null mutations in the genome stability genes, A-T mutated (ATM) and Aprataxin (APTX), respectively. Our mechanistic understanding and therapeutic repertoire for treating these disorders is severely lacking, in large part due to the failure of prior animal models with similar null mutations to recapitulate the characteristic loss of motor coordination (i.e., ataxia) and associated cerebellar defects. By increasing genotoxic stress through the insertion of null mutations in both the Atm (nonsense) and Aptx (knockout) genes in the same animal, we have generated a novel mouse model that for the first time develops a progressively severe ataxic phenotype associated with atrophy of the cerebellar molecular layer. We find biophysical properties of cerebellar Purkinje neurons are significantly perturbed (e.g., reduced membrane capacitance, lower action potential thresholds, etc.), while properties of synaptic inputs remain largely unchanged. These perturbations significantly alter Purkinje neuron neural activity, including a progressive reduction in spontaneous action potential firing frequency that correlates with both cerebellar atrophy and ataxia over the animal’s first year of life. Double mutant mice also exhibit a high predisposition to developing cancer (thymomas) and immune abnormalities (impaired early thymocyte development and T-cell maturation), symptoms characteristic of A-T. Lastly, by inserting a clinically relevant nonsense-type null mutation in Atm, we demonstrate that Small Molecule Read-Through (SMRT) compounds can restore ATM production, indicating their potential as a future A-T therapeutic.
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- 2020
11. The role of TDP1 and APTX in mitochondrial DNA repair.
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Meagher, Martin and Lightowlers, Robert N.
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MITOCHONDRIAL DNA , *DNA repair , *DNA damage , *PHOSPHODIESTERASES , *ENZYMES , *DELIBERATION , *MAMMALS - Abstract
Abstract: In recent years, our knowledge surrounding mammalian mitochondrial DNA (mtDNA) damage and repair has increased significantly. Greater insights into the factors that govern mtDNA repair are being elucidated, thus contributing to an increase in our understanding year on year. In this short review two enzymes, tyrosyl-DNA-phosphodiesterase 1 (TDP1) and aprataxin (APTX), involved in mitochondrial single strand break repair (SSBR) are discussed. The background into the identification of these enzymes in mtDNA repair is communicated with further deliberation into some of the specifics relating to the import of these enzymes into the mitochondrion. With the discovery of these enzymes in mitochondria comes the probability that other mechanisms underlying mtDNA repair are yet to be fully understood, suggesting there is much left to discover when shaping our understanding of this relatively undefined subject. [Copyright &y& Elsevier]
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- 2014
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12. DNA ligase I fidelity mediates the mutagenic ligation of pol β oxidized nucleotide insertion products and base excision repair intermediates with mismatches
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Mahesh S. Chandak, Melike Çağlayan, Pradnya Kamble, Hall K, and Qun Tang
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chemistry.chemical_classification ,Aprataxin ,DNA ligase ,biology ,DNA polymerase ,Chemistry ,Base pair ,biology.protein ,Flap structure-specific endonuclease 1 ,Base excision repair ,Ligation ,LIG1 ,Cell biology - Abstract
DNA ligase I (LIG1) completes base excision repair (BER) pathway at the last nick sealing step following DNA polymerase (pol) β gap filling DNA synthesis. We previously reported that pol β 8-oxo-2’-deoxyribonucleoside 5’-triphosphate (8-oxodGTP) insertion confounds LIG1 leading to the formation of ligation failure products with 5’-adenylate (AMP) block. Here, we report the mutagenic ligation of pol β 8-oxodGTP insertion products and an inefficient substrate-product channeling from pol β Watson-Crick like dG:T mismatch insertion to DNA ligation by LIG1 mutant with perturbed fidelity (E346A/E592A)in vitro. Moreover, our results revealed that the substrate discrimination of LIG1 for the nicked repair intermediates with preinserted 3’-8-oxodG or mismatches is governed by the mutations at both E346 and E592 residues. Finally, we found that Aprataxin (APTX) and Flap Endonuclease 1 (FEN1), as compensatory DNA-end processing enzymes, can remove 5’-AMP block from the abortive ligation products with 3’-8-oxodG or all possible 12 non-canonical base pairs. These findings contribute to understand the role of LIG1 as an important determinant of faithful BER, and how a multi-protein complex (LIG1, pol β, APTX and FEN1) can coordinate to hinder the formation of mutagenic repair intermediates with damaged or mismatched ends at the downstream steps of the BER pathway.
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- 2020
13. DNA ligase I fidelity mediates the mutagenic ligation of pol β oxidized and mismatch nucleotide insertion products in base excision repair
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Melike Çağlayan, Kalen Hall, Pradnya Kamble, Qun Tang, and Mahesh S. Chandak
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0301 basic medicine ,DNA Replication ,DNA Repair ,DNA polymerase ,Base pair ,Flap Endonucleases ,DNA ligase I ,Flap structure-specific endonuclease 1 ,aprataxin ,LIG1 ,Biochemistry ,base excision repair ,APTX, aprataxin ,03 medical and health sciences ,DNA Ligase ATP ,Humans ,flap Endonuclease 1 ,BLI, biolayer interferometry ,Flap endonuclease ,pol, polymerase ,Molecular Biology ,BER, base excision repair ,DNA Polymerase beta ,Aprataxin ,chemistry.chemical_classification ,DNA ligase ,030102 biochemistry & molecular biology ,biology ,Chemistry ,Nucleotides ,DNA polymerase β ,Cell Biology ,Base excision repair ,DNA ,AOA1, oculomotor apraxia type 1 ,Cell biology ,030104 developmental biology ,Mutagenesis ,Mutation ,biology.protein ,EE/AA, E346A/E592A ,BSA, bovine serum albumin ,8-oxodGTP, 2'-deoxyribonucleoside 5'-triphosphate ,Oxidation-Reduction ,LIG, DNA ligase ,dGTP, guanine in the nucleotide pool ,Mutagens ,Research Article ,FEN1, flap endonuclease - Abstract
DNA ligase I (LIG1) completes the base excision repair (BER) pathway at the last nick-sealing step after DNA polymerase (pol) β gap-filling DNA synthesis. However, the mechanism by which LIG1 fidelity mediates the faithful substrate–product channeling and ligation of repair intermediates at the final steps of the BER pathway remains unclear. We previously reported that pol β 8-oxo-2'-deoxyribonucleoside 5'-triphosphate insertion confounds LIG1, leading to the formation of ligation failure products with a 5'-adenylate block. Here, using reconstituted BER assays in vitro, we report the mutagenic ligation of pol β 8-oxo-2'-deoxyribonucleoside 5'-triphosphate insertion products and an inefficient ligation of pol β Watson–Crick–like dG:T mismatch insertion by the LIG1 mutant with a perturbed fidelity (E346A/E592A). Moreover, our results reveal that the substrate discrimination of LIG1 for the nicked repair intermediates with preinserted 3'-8-oxodG or mismatches is governed by mutations at both E346 and E592 residues. Finally, we found that aprataxin and flap endonuclease 1, as compensatory DNA-end processing enzymes, can remove the 5'-adenylate block from the abortive ligation products harboring 3'-8-oxodG or the 12 possible noncanonical base pairs. These findings contribute to the understanding of the role of LIG1 as an important determinant in faithful BER and how a multiprotein complex (LIG1, pol β, aprataxin, and flap endonuclease 1) can coordinate to prevent the formation of mutagenic repair intermediates with damaged or mismatched ends at the downstream steps of the BER pathway.
- Published
- 2020
14. XRCC1 - Strategies for coordinating and assembling a versatile DNA damage response
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Robert E. London
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Scaffold ,DNA Repair ,DNA damage ,DNA repair ,Computational biology ,LIG3 ,Biology ,Biochemistry ,Article ,03 medical and health sciences ,XRCC1 ,0302 clinical medicine ,Humans ,Molecular Biology ,030304 developmental biology ,Aprataxin ,chemistry.chemical_classification ,0303 health sciences ,DNA ligase ,Cell Biology ,Base excision repair ,DNA ,X-ray Repair Cross Complementing Protein 1 ,chemistry ,030220 oncology & carcinogenesis ,DNA Damage - Abstract
X-ray cross complementing protein 1 (XRCC1) is a DNA repair scaffold that supports base excision repair and single strand break repair, and is also a participant in other repair pathways. It also serves as an important co-transporter for several other repair proteins, including aprataxin and PNKP-like factor (APLF), and DNA Ligase 3α (LIG3). By combining highly specialized regions that help to organize specific repair functions with recruitment of additional enzymes whose contribution is dependent on the details of the damaged site, XRCC1 is able to handle an expanded range of problems that may arise as the repair progresses or in connection with other repair pathways with which it interfaces. This review discusses the interplay between these functions and considers some possible interactions that underlie its reported repair activities.
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- 2020
15. Complex Movement Disorders in Ataxia with Oculomotor Apraxia Type 1: Beyond the Cerebellar Syndrome
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Mariana Santos, Sophia Caldas Gonzaga da Costa, Orlando Graziani Povoas Barsottini, Isabel Alonso, José Luiz Pedroso, Thiago Cardoso Vale, and Instituto de Investigação e Inovação em Saúde
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Movement disorders ,genetic structures ,ataxia with oculomotor apraxia ,DNA-Binding Proteins / genetics ,Choreoathetosis ,Case Report ,Hypoalbuminemia / diagnostic imaging ,Dystonia / physiopathology ,Cerebellar Ataxia / congenital ,Cerebellar Ataxia / physiopathology ,Hypoalbuminemia / physiopathology ,Cerebellum / diagnostic imaging ,Cerebellum ,Apraxias / physiopathology ,Oculomotor apraxia ,ataxia with oculomotor apraxia type 1 ,Dystonia ,Hypoalbuminemia / genetics ,Apraxias / genetics ,Chorea / physiopathology ,Female ,Cerebellar atrophy ,medicine.symptom ,Ataxia with oculomotor apraxia type 1 ,congenital, hereditary, and neonatal diseases and abnormalities ,Ataxia ,cerebellum ,Cerebellar Diseases / physiopathology ,Reflex, Abnormal / physiology ,Nuclear Proteins / genetics ,Young Adult ,medicine ,Humans ,Ataxia with oculomotor apraxia ,Cerebellar Ataxia / diagnostic imaging ,Aprataxin ,Electromyography ,business.industry ,ataxia ,Chorea ,medicine.disease ,Apraxias / diagnostic imaging ,nervous system diseases ,Cerebellar Ataxia / genetics ,Cerebellum / pathology ,movement disorders ,Atrophy ,business ,Neuroscience - Abstract
Background: Ataxia with oculomotor apraxia (AOA1) is characterized by early-onset progressive cerebellar ataxia with peripheral neuropathy, oculomotor apraxia and hypoalbuminemia and hypercholesterolemia. Case Report: A 23-year-old previously healthy woman presented with slowly-progressive gait impairment since the age of six years. Neurological examination revealed profound areflexia, chorea, generalized dystonia and oculomotor apraxia. Brain MRI revealed mild cerebellar atrophy and needle EMG showed axonal sensorimotor neuropathy. Whole exome sequencing revealed a mutation in the aprataxin gene. Discussion: AOA1 can present with choreoathetosis mixed with dystonic features, resembling ataxia-telangiectasia. This case is instructive since mixed and complex movement disorders is not very common in AOA1. Highlights: • Ataxia with oculomotor apraxia type 1 (AOA1) is characterized by early-onset ataxia and oculomotor apraxia caused by variants in the APTX gene. • Ataxia is usually not the sole movement abnormality in AOA1. • Hyperkinetic movement disorders, especially chorea and dystonia, may occur. • Mixed and complex movement disorders is not very common in AOA1. • Patients with early-onset ataxia associated with mixed movement disorders should also be investigated for AOA1.
- Published
- 2020
16. Generation and characterization of induced pluripotent stem cell (iPSC) line (JUCTCi002-A) from a patient with ataxia with oculomotor apraxia type 1 (AOA1) harboring a homozygous mutation in the APTX gene
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Basil Sharrack, Raghda Barham, Duaa Abuarqoub, Abdalla Awidi, Ban Al-Kurdi, Ahmad M. Altantawi, Nidaa A. Ababneh, Dema Ali, Abdee T. Ryalat, Abdulla M. Alzibdeh, and Asim N. Khanfar
- Subjects
Ataxia ,Cerebellar Ataxia ,Induced Pluripotent Stem Cells ,aptX ,Biology ,medicine.disease_cause ,medicine ,Humans ,Spinocerebellar Ataxias ,Oculomotor apraxia ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Aprataxin ,Mutation ,Cerebellar ataxia ,Nuclear Proteins ,Cell Biology ,General Medicine ,medicine.disease ,Cell biology ,DNA-Binding Proteins ,lcsh:Biology (General) ,Cerebellar atrophy ,medicine.symptom ,Developmental Biology - Abstract
Ataxia with Oculomotor Apraxia Type 1 (AOA1) is an autosomal-recessive cerebellar ataxia characterized by early-onset cerebellar atrophy and axonal sensorimotor polyneuropathy. AOA1 is related to mutations in the aprataxin (APTX) gene encoding for the aprataxin protein. The aprataxin protein has been reported to be involved in DNA single-strand break repair (SSBR) machinery and it localizes to the mitochondria to preserve the mitochondrial function. Here, we demonstrate the generation of induced pluripotent stem cell (iPSC) line (JUCTCi002-A) from AOA1 patient’s skin dermal fibroblasts. The selected line showed normal karyotype, expression of pluripotency markers and the ability to differentiatie in vitro into the three germ layers.
- Published
- 2020
17. Resonance assignment for a particularly challenging protein based on systematic unlabeling of amino acids to complement incomplete NMR data sets.
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Bellstedt, Peter, Seiboth, Thomas, Häfner, Sabine, Kutscha, Henriette, Ramachandran, Ramadurai, and Görlach, Matthias
- Abstract
NMR-based structure determination of a protein requires the assignment of resonances as indispensable first step. Even though heteronuclear through-bond correlation methods are available for that purpose, challenging situations arise in cases where the protein in question only yields samples of limited concentration and/or stability. Here we present a strategy based upon specific individual unlabeling of all 20 standard amino acids to complement standard NMR experiments and to achieve unambiguous backbone assignments for the fast precipitating 23 kDa catalytic domain of human aprataxin of which only incomplete standard NMR data sets could be obtained. Together with the validation of this approach utilizing the protein GB1 as a model, a comprehensive insight into metabolic interconversion ("scrambling') of NH and CO groups in a standard Escherichia coli expression host is provided. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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18. Ataxia with oculomotor apraxia type1 (AOA1): novel and recurrent aprataxin mutations, coenzyme Q10 analyses, and clinical findings in Italian patients.
- Author
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Castellotti, Barbara, Mariotti, Caterina, Rimoldi, Marco, Fancellu, Roberto, Plumari, Massimo, Caimi, Sara, Uziel, Graziella, Nardocci, Nardo, Moroni, Isabella, Zorzi, Giovanna, Pareyson, Davide, Bella, Daniela, Donato, Stefano, Taroni, Franco, and Gellera, Cinzia
- Abstract
Ataxia with oculomotor apraxia type1 (AOA1, MIM 208920) is a rare autosomal recessive disease caused by mutations in the APTX gene. We screened a cohort of 204 patients with cerebellar ataxia and 52 patients with early-onset isolated chorea. APTX gene mutations were found in 13 ataxic patients (6%). Eleven patients were homozygous for the known p.W279X, p.W279R, and p.P206L mutations. Three novel APTX mutations were identified: c.477delC (p.I159fsX171), c.C541T (p.Q181X), and c.C916T (p.R306X). Expression of mutated proteins in lymphocytes from these patients was greatly decreased. No mutations were identified in subjects with isolated chorea. Two heterozygous APTX sequence variants (p.L248M and p.D185E) were found in six families with ataxic phenotype. Analyses of coenzyme Q10 in muscle, fibroblasts, and plasma demonstrated normal levels of coenzyme in five of six mutated subjects. The clinical phenotype was homogeneous, irrespectively of the type and location of the APTX mutation, and it was mainly characterized by early-onset cerebellar signs, sensory neuropathy, cognitive decline, and oculomotor deficits. Three cases had slightly raised alpha-fetoprotein. Our survey describes one of the largest series of AOA1 patients and contributes in defining clinical, molecular, and biochemical characteristics of this rare hereditary neurological condition. [ABSTRACT FROM AUTHOR]
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- 2011
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19. Hit proteins, mitochondria and cancer
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Martin, Juliette, St-Pierre, Marie V., and Dufour, Jean-François
- Subjects
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HISTIDINE , *PROTEINS , *MITOCHONDRIA , *CANCER , *PROKARYOTES , *EPIDEMIOLOGY , *DNA repair , *MESSENGER RNA , *APOPTOSIS - Abstract
Abstract: The histidine triad (HIT) superfamily comprises proteins that share the histidine triad motif, His-ϕ-His-ϕ-His-ϕ–ϕ, where ϕ is a hydrophobic amino acid. HIT proteins are ubiquitous in prokaryotes and eukaryotes. HIT proteins bind nucleotides and exert dinucleotidyl hydrolase, nucleotidylyl transferase or phosphoramidate hydrolase enzymatic activity. In humans, 5 families of HIT proteins are recognized. The accumulated epidemiological and experimental evidence indicates that two branches of the superfamily, the HINT (Histidine Triad Nucleotide Binding) members and FHIT (Fragile Histidine Triad), have tumor suppressor properties but a conclusive physiological role can still not be assigned to these proteins. Aprataxin forms another discrete branch of the HIT superfamily, is implicated in DNA repair mechanisms and unlike the HINT and FHIT members, a defective protein can be conclusively linked to a disease, ataxia with oculomotor apraxia type 1. The scavenger mRNA decapping enzyme, DcpS, forms a fourth branch of the HIT superfamily. Finally, the GalT enzymes, which exert specific nucleoside monophosphate transferase activity, form a fifth branch that is not implicated in tumorigenesis. The molecular mechanisms by which the HINT and FHIT proteins participate in bioenergetics of cancer are just beginning to be unraveled. Their purported actions as tumor suppressors are highlighted in this review. This article is part of a Special Issue entitled: Bioenergetics of Cancer. [Copyright &y& Elsevier]
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- 2011
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20. Genotype–phenotype correlations in early onset ataxia with ocular motor apraxia and hypoalbuminaemia.
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Yokoseki, Akio, Ishihara, Tomohiko, Koyama, Akihide, Shiga, Atsushi, Yamada, Mitsunori, Suzuki, Chieko, Sekijima, Yoshiki, Maruta, Kyoko, Tsuchiya, Miyuki, Date, Hidetoshi, Sato, Tatsuya, Tada, Masayoshi, Ikeuchi, Takeshi, Tsuji, Shoji, Nishizawa, Masatoyo, and Onodera, Osamu
- Subjects
- *
ATAXIA , *APRAXIA , *SERUM albumin , *EYE movement disorders , *PHENOTYPES , *SURVIVAL analysis (Biometry) , *MESSENGER RNA , *GENETIC mutation - Abstract
Early onset ataxia with ocular motor apraxia and hypoalbuminaemia/ataxia–oculomotor apraxia 1 is a recessively inherited ataxia caused by mutations in the aprataxin gene. We previously reported that patients with frameshift mutations exhibit a more severe phenotype than those with missense mutations. However, reports on genotype–phenotype correlation in early onset ataxia with ocular motor apraxia and hypoalbuminaemia are controversial. To clarify this issue, we studied 58 patients from 39 Japanese families, including 40 patients homozygous for c.689_690insT and nine patients homozygous or compound heterozygous for p.Pro206Leu or p.Val263Gly mutations who were compared with regard to clinical phenotype. We performed Kaplan–Meier analysis and log-rank tests for the ages of onset of gait disturbance and the inability to walk without assistance. The cumulative rate of gait disturbance was lower among patients with p.Pro206Leu or p.Val263Gly mutations than among those homozygous for the c.689_690insT mutation (P = 0.001). The cumulative rate of inability to walk without assistance was higher in patients homozygous for the c.689_690insT mutation than in those with p.Pro206Leu or p.Val263Gly mutations (P = 0.004). Using a Cox proportional hazards model, we found that the homozygous c.689_690insT mutation was associated with an increased risk for onset of gait disturbance (adjusted hazard ratio: 6.60) and for the inability to walk without assistance (adjusted hazard ratio: 2.99). All patients homozygous for the c.689_690insT mutation presented ocular motor apraxia at <15 years of age. Approximately half the patients homozygous for the c.689_690insT mutation developed cognitive impairment. In contrast, in the patients with p.Pro206Leu or p.Val263Gly mutations, only ∼50% of the patients exhibited ocular motor apraxia and they never developed cognitive impairment. The stepwise multivariate regression analysis using sex, age and the number of c.689_690insT alleles as independent variables revealed that the number of c.689_690insT alleles was independently and negatively correlated with median motor nerve conduction velocities, ulnar motor nerve conduction velocities and values of serum albumin. In the patient with c.[689_690insT]+[840delT], p.[Pro206Leu]+[Pro206Leu] and p.[Pro206Leu]+[Val263Gly] mutations, aprataxin proteins were not detected by an antibody to the N-terminus of aprataxin. Furthermore Pro206Leu and Val263Gly aprataxin proteins are unstable. However, the amount of the 689_690insT aprataxin messenger RNA was also decreased, resulting in more dramatic reduction in the amount of aprataxin protein from the c.689_690insT allele. In conclusion, patients with early onset ataxia with ocular motor apraxia and hypoalbuminaemia homozygous for the c.689_690insT mutation show a more severe phenotype than those with a p.Pro206Leu or p.Val263Gly mutation. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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21. Genetic interactions between HNT3/Aprataxin and RAD27/FEN1 suggest parallel pathways for 5′ end processing during base excision repair
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Daley, James M., Wilson, Thomas E., and Ramotar, Dindial
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DNA repair , *GENETIC mutation , *NEURODEGENERATION , *ADENOSINE monophosphate , *SACCHAROMYCES cerevisiae , *DNA ligases , *TELANGIECTASIA , *ATAXIA - Abstract
Abstract: Mutations in Aprataxin cause the neurodegenerative syndrome ataxia oculomotor apraxia type 1. Aprataxin catalyzes removal of adenosine monophosphate (AMP) from the 5′ end of a DNA strand, which results from an aborted attempt to ligate a strand break containing a damaged end. To gain insight into which DNA lesions are substrates for Aprataxin action in vivo, we deleted the Saccharomyces cerevisiae HNT3 gene, which encodes the Aprataxin homolog, in combination with known DNA repair genes. While hnt3Δ single mutants were not sensitive to DNA damaging agents, loss of HNT3 caused synergistic sensitivity to H2O2 in backgrounds that accumulate strand breaks with blocked termini, including apn1Δ apn2Δ tpp1Δ and ntg1Δ ntg2Δ ogg1Δ. Loss of HNT3 in rad27Δ cells, which are deficient in long-patch base excision repair (LP-BER), resulted in synergistic sensitivity to H2O2 and MMS, indicating that Hnt3 and LP-BER provide parallel pathways for processing 5′ AMPs. Loss of HNT3 also increased the sister chromatid exchange frequency. Surprisingly, HNT3 deletion partially rescued H2O2 sensitivity in recombination-deficient rad51Δ and rad52Δ cells, suggesting that Hnt3 promotes formation of a repair intermediate that is resolved by recombination. [Copyright &y& Elsevier]
- Published
- 2010
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22. Absence of aprataxin gene mutations in a Greek cohort with sporadic early onset ataxia and normal GAA triplets in frataxin gene.
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Daiou, C., Christodoulou, K., Xiromerisiou, G., Panas, M., Dardiotis, E., Kladi, A., Speletas, M., Ntaios, G., Papadimitriou, A., Germenis, A., and Hadjigeorgiou, Georgios
- Subjects
- *
GENES , *PHENOTYPES , *FRATAXIN , *ATAXIA , *PATIENTS , *FRIEDREICH'S ataxia - Abstract
Phenotype of patients with the aprataxin gene mutation varies and according to previous studies, screening of aprataxin gene could be useful, once frataxin gene mutation is excluded in patients with normal GAA expansion in frataxin gene. In the present study, we sought to determine possible causative mutations in aprataxin gene (all exons and flanking intronic sequences) in 14 Greek patients with sporadic cerebellar ataxia all but one without GAA expansion in frataxin gene (1 patient was heterozygous). No detectable point mutation or deletion was found in the aprataxin gene of all the patients. Our results do not confirm the previous studies. This difference may be attributed to the different populations studied and possible different genetic background. It is still questionable whether the screening for aprataxin mutation in Greek patients’ Friedreich ataxia phenotype is of clinical importance; larger, multicenter studies are necessary to clarify this issue. [ABSTRACT FROM AUTHOR]
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- 2010
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23. Synergistic decrease of DNA single-strand break repair rates in mouse neural cells lacking both Tdp1 and aprataxin
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El-Khamisy, Sherif F., Katyal, Sachin, Patel, Poorvi, Ju, Limei, McKinnon, Peter J., and Caldecott, Keith W.
- Subjects
- *
DNA damage , *DNA repair , *LABORATORY mice , *NEURODEGENERATION , *DNA topoisomerase I , *PEPTIDES , *NEURONS - Abstract
Abstract: Ataxia oculomotor apraxia-1 (AOA1) is an autosomal recessive neurodegenerative disease that results from mutations of aprataxin (APTX). APTX associates with the DNA single- and double-strand break repair machinery and is able to remove AMP from 5′-termini at DNA strand breaks in vitro. However, attempts to establish a DNA strand break repair defect in APTX-defective cells have proved conflicting and unclear. We reasoned that this may reflect that DNA strand breaks with 5′-AMP represent only a minor subset of breaks induced in cells, and/or the availability of alternative mechanisms for removing AMP from 5′-termini. Here, we have attempted to increase the dependency of chromosomal single- and double-strand break repair on aprataxin activity by slowing the rate of repair of 3′-termini in aprataxin-defective neural cells, thereby increasing the likelihood that the 5′-termini at such breaks become adenylated and/or block alternative repair mechanisms. To do this, we generated a mouse model in which APTX is deleted together with tyrosyl DNA phosphodiesterase (TDP1), an enzyme that repairs 3′-termini at a subset of single-strand breaks (SSBs), including those with 3′-topoisomerase-1 (Top1) peptide. Notably, the global rate of repair of oxidative and alkylation-induced SSBs was significantly slower in Tdp1 −/−/Aptx −/− double knockout quiescent mouse astrocytes compared with Tdp1 −/− or Aptx −/− single knockouts. In contrast, camptothecin-induced Top1-SSBs accumulated to similar levels in Tdp1 −/− and Tdp1 −/−/Aptx −/− double knockout astrocytes. Finally, we failed to identify a measurable defect in double-strand break repair in Tdp1 −/−, Aptx −/− or Tdp1 −/−/Aptx −/− astrocytes. These data provide direct evidence for a requirement for aprataxin during chromosomal single-strand break repair in primary neural cells lacking Tdp1. [Copyright &y& Elsevier]
- Published
- 2009
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24. Screening a genome-wide S. pombe deletion library identifies novel genes and pathways involved in genome stability maintenance
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Deshpande, Gaurang P., Hayles, Jacqueline, Hoe, Kwang-Lae, Kim, Dong-Uk, Park, Han-Oh, and Hartsuiker, Edgar
- Subjects
- *
GENE libraries , *SCHIZOSACCHAROMYCES pombe , *GENOMES , *ORGANISMS , *CELL death , *DNA repair , *DNA damage - Abstract
Abstract: The maintenance of genome stability is essential for an organism to avoid cell death and cancer. Based on screens for mutant sensitivity against DNA damaging agents a large number of DNA repair and DNA damage checkpoint genes have previously been identified in genetically amenable model organisms. These screens have however not been exhaustive and various genes have been, and remain to be, identified by other means. We therefore screened a genome-wide Schizosaccharomyces pombe deletion library for mutants sensitive against various DNA damaging agents. Screening the library on different concentrations of these genotoxins allowed us to assign a semi-quantitative score to each mutant expressing the degree of sensitivity. We isolated a total of 229 mutants which show sensitivity to one or more of the DNA damaging agents used. This set of mutants was significantly enriched for processes involved in DNA replication, DNA repair, DNA damage checkpoint, response to UV, mating type switching, telomere length maintenance and meiosis, and also for processes involved in the establishment and maintenance of chromatin architecture (notably members of the SAGA complex), transcription (members of the CCR4-Not complex) and microtubule related processes (members of the DASH complex). We also identified 23 sensitive mutants which had previously been classified as “sequence orphan” or as “conserved hypothetical”. Among these, we identified genes showing extensive homology to CtIP, Stra13, Ybp1/Ybp2, Human Fragile X mental retardation interacting protein NUFIP1, and Aprataxin. The identification of these homologues will provide a basis for the further characterisation of the role of these conserved proteins in the genetically amenable model organism S. pombe. [Copyright &y& Elsevier]
- Published
- 2009
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25. Restoration of nuclear-import failure caused by triple A syndrome and oxidative stress
- Author
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Kiriyama, Takao, Hirano, Makito, Asai, Hirohide, Ikeda, Masanori, Furiya, Yoshiko, and Ueno, Satoshi
- Subjects
- *
OXIDATIVE stress , *POLYCYSTIC kidney disease , *NEURONS , *LIGASES - Abstract
Abstract: Triple A syndrome is an autosomal recessive neurological disease, mimicking motor neuron disease, and is caused by mutant ALADIN, a nuclear-pore complex component. We recently discovered that the pathogenesis involved impaired nuclear import of DNA repair proteins, including DNA ligase I and the cerebellar ataxia causative protein aprataxin. Such impairment was overcome by fusing classical nuclear localization signal (NLS) and 137-aa downstream sequence of XRCC1, designated stretched NLS (stNLS). We report here that the minimum essential sequence of stNLS (mstNLS) is residues 239–276, downsized by more than 100 aa. mstNLS enabled efficient nuclear import of DNA repair proteins in patient fibroblasts, functioned under oxidative stress, and reduced oxidative-stress-induced cell death, more effectively than stNLS. The stress-tolerability of mstNLS was also exerted in control fibroblasts and neuroblastoma cells. These findings may help develop treatments for currently intractable triple A syndrome and other oxidative-stress-related neurological diseases, and contribute to nuclear compartmentalization study. [Copyright &y& Elsevier]
- Published
- 2008
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26. Purkinje Cell Loss in the Cerebellar Flocculus in Patients with Ataxia with Ocular Motor Apraxia Type 1/Early-Onset Ataxia with Ocular Motor Apraxia and Hypoalbuminemia.
- Author
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Sugawara, Masashiro, Wada, Chizu, Okawa, Satoshi, Kobayashi, Michio, Sageshima, Masato, Imota, Tsuyoshi, and Toyoshima, Itaru
- Subjects
- *
PURKINJE cells , *MOVEMENT disorders , *ATAXIA , *PSYCHOMOTOR disorders , *APRAXIA , *AUTOPSY , *PATIENTS - Abstract
We genetically screened patients with ataxia with ocular motor apraxia type 1 (AOA1)/early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH), with a Japanese variant form of Friedreich’s ataxia. Three patients were found to have a homozygous insertion mutation of the aprataxin gene (689insT). An elder sister of a patient in this series died of cerebral hemorrhage at the age of 45, and underwent autopsy. In her cerebellar cortex, the mean density of Purkinje cells in the flocculus had predominantly decreased to 6.7% of normal controls, whereas the Purkinje cells in the other areas of the cerebellar hemisphere had decreased to 78.2%. This suggests that the cerebellar flocculus is the primary affected lesion in AOA1/EAOH, which should be associated with ocular motor apraxia. Copyright © 2007 S. Karger AG, Basel [ABSTRACT FROM AUTHOR]
- Published
- 2008
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27. A novel mutation of aprataxin associated with ataxia ocular apraxia type 1: Phenotypical and genotypical characterization
- Author
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Ferrarini, Moreno, Squintani, Giovanna, Cavallaro, Tiziana, Ferrari, Sergio, Rizzuto, Nicolo', and Fabrizi, Gian Maria
- Subjects
- *
ATAXIA , *CEREBELLAR ataxia , *LOCOMOTOR ataxia - Abstract
Abstract: Ataxia oculomotor apraxia type 1 (AOA1) is the most common form of autosomal recessive ataxia in Japan, and the second in Portugal after Friedreich ataxia. AOA1 is typically characterized by early-onset cerebellar ataxia, oculomotor apraxia, hypoalbuminemia, hypercholesterolemia and late axonal sensori-motor neuropathy. AOA1 is associated with the aprataxin gene (APTX) encoding a protein involved in DNA repair. We characterized a novel homozygous missense mutation of APTX in a 34 year-old female patient born from consanguineous parents. The mutation, a Val230Gly caused by a c.689 T>G substitution, involved the histidine-triad (HIT) domain of the protein, affected a phylogenetically conserved amino acid and was absent in the control population. We described the clinical and neurophysiological features, the findings at structural and functional brain imaging, and the pathological picture of the sural nerve biopsy. The report emphasized the genetical and phenotypical heterogeneity of AOA1 by demonstrating atypical features such as absence of oculomotor apraxia and signs of pyramidal involvement. Expression studies by Western blotting on fibroblasts demonstrated that the homozygous Val230Gly mutation was associated with decreased levels of APTX indicating a loss-of-function mechanism. [Copyright &y& Elsevier]
- Published
- 2007
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28. Short half-lives of ataxia-associated aprataxin proteins in neuronal cells
- Author
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Hirano, Makito, Asai, Hirohide, Kiriyama, Takao, Furiya, Yoshiko, Iwamoto, Takaaki, Nishiwaki, Tomohisa, Yamamoto, Aya, Mori, Toshio, and Ueno, Satoshi
- Subjects
- *
ATAXIA , *MOVEMENT disorders , *NEURONS , *EXONS (Genetics) - Abstract
Abstract: Early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH)/ataxia with oculomotor apraxia type 1 (AOA1) is caused by mutations in the gene encoding aprataxin (APTX). Although several in vitro findings proposed that impaired enzymatic activities of APTX are responsible for EAOH/AOA1, potential instability of mutant proteins has also been suggested as the pathogenesis based on in vivo finding that mutant proteins are almost undetectable in EAOH/AOA1 tissues or cells. The present study aimed to experimentally prove instability of mutant proteins in neuronal cells, the cell type preferentially affected by this disease. Results of pulse-chase experiments demonstrated that all of the disease-associated mutants had extremely shorter half-lives than the WT. We further found that mutants were targeted for rapid proteasome-mediated degradation. These results help establish pathogenic and physiological protein characteristics of APTX in neuronal cells. [Copyright &y& Elsevier]
- Published
- 2007
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29. A subgroup of spinocerebellar ataxias defective in DNA damage responses
- Author
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Gueven, N., Chen, P., Nakamura, J., Becherel, O.J., Kijas, A.W., Grattan-Smith, P., and Lavin, M.F.
- Subjects
- *
ATAXIA , *DNA damage , *APRAXIA , *NEURODEGENERATION - Abstract
Abstract: A subgroup of human autosomal recessive ataxias is also characterized by disturbances of eye movement or oculomotor apraxia. These include ataxia telangiectasia (A-T); ataxia telangiectasia like disorder (ATLD); ataxia oculomotor apraxia type 1 (AOA1) and ataxia oculomotor apraxia type 2 (AOA2). What appears to be emerging is that all of these have in common some form of defect in DNA damage response which could account for the neurodegenerative changes seen in these disorders. We describe here sensitivity to DNA damaging agents in AOA1 and evidence that these cells have a defect in single strand break repair. Comparison is made with what appears to be a novel form of AOA (AOA3) which also shows sensitivity to agents that lead to single strand breaks in DNA as well as a reduced capacity to repair these breaks. AOA3 cells are defective in the DNA damage-induced p53 response. This defect can be overcome by incubation with the mdm2 antagonists, nutlins, but combined treatment with nutlins and DNA damage does not enhance the response. We also show that AOA3 cells are deficient in p73 activation after DNA damage. These data provide further evidence that different forms of AOA have in common a reduced capacity to cope with damage to DNA, which may account for the neurodegeneration observed in these syndromes. [Copyright &y& Elsevier]
- Published
- 2007
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30. Aprataxin (APTX) gene mutations resembling multiple system atrophy
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Baba, Yasuhiko, Uitti, Ryan J., Boylan, Kevin B., Uehara, Yoshinari, Yamada, Tatsuo, Farrer, Matthew J., Couchon, Elizabeth, Batish, Sat Dev, and Wszolek, Zbigniew K.
- Subjects
- *
APRAXIA , *PSYCHOMOTOR disorders , *ATAXIA , *PATIENTS - Abstract
Abstract: Mutations of the aprataxin (APTX) gene cause early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH), also called ataxia with oculomotor apraxia type 1. Recent studies showed clinical heterogeneity in patients with EAOH. We describe 2 patients whose clinical features resembled those of multiple system atrophy of the cerebellar subtype (MSA-C) but without ocular motor apraxia and hypoalbuminemia. Each had a different nucleotide transition in the APTX gene (725G→A and 457A→G). These variants on the APTX gene exhibit phenotypic variability. [Copyright &y& Elsevier]
- Published
- 2007
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31. Characterization of the APLF FHA–XRCC1 phosphopeptide interaction and its structural and functional implications
- Author
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Lars C. Pedersen, Thomas W. Kirby, Robert E. London, Kyungmin Kim, and Eugene F. DeRose
- Subjects
0301 basic medicine ,Models, Molecular ,Phosphopeptides ,Plasma protein binding ,Biology ,Genome Integrity, Repair and Replication ,03 medical and health sciences ,XRCC1 ,chemistry.chemical_compound ,Genetics ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Protein Interaction Domains and Motifs ,Binding site ,Casein Kinase II ,Poly-ADP-Ribose Binding Proteins ,Aprataxin ,Binding Sites ,030102 biochemistry & molecular biology ,Phosphopeptide ,DNA repair protein XRCC4 ,Hydrogen-Ion Concentration ,030104 developmental biology ,Phosphothreonine ,X-ray Repair Cross Complementing Protein 1 ,chemistry ,Phosphoserine ,Biophysics ,Protein Binding - Abstract
Aprataxin and PNKP-like factor (APLF) is a DNA repair factor containing a forkhead-associated (FHA) domain that supports binding to the phosphorylated FHA domain binding motifs (FBMs) in XRCC1 and XRCC4. We have characterized the interaction of the APLF FHA domain with phosphorylated XRCC1 peptides using crystallographic, NMR, and fluorescence polarization studies. The FHA–FBM interactions exhibit significant pH dependence in the physiological range as a consequence of the atypically high pK values of the phosphoserine and phosphothreonine residues and the preference for a dianionic charge state of FHA-bound pThr. These high pK values are characteristic of the polyanionic peptides typically produced by CK2 phosphorylation. Binding affinity is greatly enhanced by residues flanking the crystallographically-defined recognition motif, apparently as a consequence of non-specific electrostatic interactions, supporting the role of XRCC1 in nuclear cotransport of APLF. The FHA domain-dependent interaction of XRCC1 with APLF joins repair scaffolds that support single-strand break repair and non-homologous end joining (NHEJ). It is suggested that for double-strand DNA breaks that have initially formed a complex with PARP1 and its binding partner XRCC1, this interaction acts as a backup attempt to intercept the more error-prone alternative NHEJ repair pathway by recruiting Ku and associated NHEJ factors.
- Published
- 2017
32. Complementation of aprataxin deficiency by base excision repair enzymes in mitochondrial extracts
- Author
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Shunichi Takeda, Matthew J. Longley, Masataka Tsuda, Keizo Tano, Rajendra Prasad, Hiroyuki Sasanuma, William C. Copeland, Rachel Krasich, Melike Çağlayan, Kei Kadoda, and Samuel H. Wilson
- Subjects
0301 basic medicine ,DNA Repair ,Flap Endonucleases ,DNA polymerase ,DNA repair ,aptX ,Genome Integrity, Repair and Replication ,In Vitro Techniques ,03 medical and health sciences ,Genetics ,Humans ,Lyase activity ,DNA Polymerase beta ,Aprataxin ,biology ,Nuclear Proteins ,DNA ,Base excision repair ,Molecular biology ,Recombinant Proteins ,DNA Polymerase gamma ,Mitochondria ,DNA-Binding Proteins ,030104 developmental biology ,DNA glycosylase ,biology.protein ,Nucleotide excision repair - Abstract
Mitochondrial aprataxin (APTX) protects the mitochondrial genome from the consequence of ligase failure by removing the abortive ligation product, i.e. the 5′-adenylate (5′-AMP) group, during DNA replication and repair. In the absence of APTX activity, blocked base excision repair (BER) intermediates containing the 5′-AMP or 5′-adenylated-deoxyribose phosphate (5′-AMP-dRP) lesions may accumulate. In the current study, we examined DNA polymerase (pol) γ and pol β as possible complementing enzymes in the case of APTX deficiency. The activities of pol β lyase and FEN1 nucleotide excision were able to remove the 5′-AMP-dRP group in mitochondrial extracts from APTX−/− cells. However, the lyase activity of purified pol γ was weak against the 5′-AMP-dRP block in a model BER substrate, and this activity was not able to complement APTX deficiency in mitochondrial extracts from APTX−/−Pol β−/− cells. FEN1 also failed to provide excision of the 5′-adenylated BER intermediate in mitochondrial extracts. These results illustrate the potential role of pol β in complementing APTX deficiency in mitochondria.
- Published
- 2017
33. Unexpectedly mild phenotype in an ataxic family with a two-base deletion in the APTX gene
- Author
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Hiroya Inoue, Makito Hirano, Susumu Kusunoki, Hikaru Sakamoto, Yusaku Nakamura, Ryusuke Matsumura, Shuichi Ueno, and Kazumasa Saigoh
- Subjects
Male ,0301 basic medicine ,Ataxia ,aptX ,Biology ,Frameshift mutation ,03 medical and health sciences ,Exon ,Fatal Outcome ,0302 clinical medicine ,medicine ,Humans ,Protein Isoforms ,Missense mutation ,RNA, Messenger ,Oculomotor apraxia ,Frameshift Mutation ,Gene ,Cells, Cultured ,Aged ,Sequence Deletion ,Aprataxin ,Genetics ,Nuclear Proteins ,Middle Aged ,medicine.disease ,Molecular biology ,DNA-Binding Proteins ,Phenotype ,030104 developmental biology ,Neurology ,Female ,Neurology (clinical) ,medicine.symptom ,030217 neurology & neurosurgery - Abstract
Introduction Early onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH)/ataxia with oculomotor apraxia 1 (AOA1) is an autosomal recessive disorder caused by mutations in the APTX gene. In contrast to the recent progress on the molecular mechanism of aprataxin in DNA repair, the genotype and phenotype correlation has not been fully established. A previous study demonstrated that patients with truncation mutations had earlier onset of disease than those with missense mutations Methods Genomic DNA analysis was performed in a consanguineous family with relatively late-onset EAOH/AOA1. In addition, mRNA and protein analyses were performed. Results The proband of the family had a homozygous two-base deletion in the middle of exon 3. Reverse-transcriptase–polymerase-chain-reaction (RT-PCR) assays of mRNA revealed an aberrantly spliced mRNA with a cryptic splice site located four bases upstream of the deletion site. The newly identified mRNA retained a frameshift mutation and encoded a truncated protein. Immunoblot analysis did not detect the truncated protein in the patient's fibroblasts, possibly because it was unstable. Conclusions Although patients with truncation mutations had an earlier onset of disease, our findings suggest that patients with a truncation mutation resulting in an undetectable protein level can also have a later onset of disease.
- Published
- 2017
34. Spinocerebellar ataxia with ocular motor apraxia and DNA repair.
- Author
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Onodera, Osamu
- Subjects
- *
FRIEDREICH'S ataxia , *ATAXIA , *APRAXIA , *DNA repair , *SACCADIC eye movements , *CLINICAL trials - Abstract
At least four disorders, ataxia telangiectasia (AT), an ataxia-telangiectasia-like disorder, early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH)/ataxia with oculomotor apraxia type 1 (AOA1), and ataxia with oculomotor apraxia type 2, are accompanied by ocular motor apraxia (OMA), which is an impairment of saccadic eye movement initiation. The characteristic pathological findings of EAOH/AOA1 and AT are a severe loss of Purkinje cells, severe myelin pallor of the posterior columns, and moderate neuronal loss in the dorsal root ganglia and anterior horn. Purkinje cells stimulate the fastigial nucleus and suppress omnipause neurons to initiate saccadic eye movement. The selective loss of Purkinje cells might cause OMA and disturb the cancellation of the vestibulo-ocular reflex. These disorders have the following common clinical features: ataxia, involuntary movements, and peripheral neuronopathy. In addition, the causative genes for these disorders are associated with the DNA/RNA quality control system. The impairment of DNA/RNA integrity results in selective neuronal loss in these recessive-inherited ataxias. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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35. ALADINI482S causes selective failure of nuclear protein import and hypersensitivity to oxidative stress in triple A syndrome.
- Author
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Hirano, Makito, Furiya, Yoshiko, Asai, Hirohide, Yasui, Akira, and Ueno, Satoshi
- Subjects
- *
SYNDROMES , *DNA damage , *OXIDATIVE stress , *GENETIC mutation , *FIBROBLASTS , *BIOCHEMICAL genetics - Abstract
Triple A syndrome is an autosomal recessive neuroendocrinological disease caused by mutations in a gene that encodes 546 amino acid residues. The encoded protein is the nucleoporin ALADIN, a component of nuclear pore complex (NPC). We identified a mutant ALADIN1482S that fails to target NPC and investigated the consequences of mistargeting using cultured fibroblasts (1482Sf) from a patient with triple A syndrome. ALADINI482S affected a karyo- pherin-α/β-mediated import pathway and decreased nuclear accumulations of aprataxin (APTX), a repair protein for DNA single- strand breaks (SSBs), and of DNA ligase I in I482Sf. This decrease was restored by wild-type ALADIN. ALADINI482S had no effect on imports of M9/kap-β2, BIB/kap-β3. histone H1/importin 7, the ubiquitin conjugating enzyme UbcM2/importin 11. or the spliceosome protein U1A, indicating that ALADINI482S selectively impaired transport of discrete import complexes through NPC. Cell survival assay showed hypersensitivity of I482Sf to L-buthionine-(S,R)- sulfoximine (BSO), a glutathione-depleting agent. BSO decreased nuclear APTX and ligase I levels in I482Sf and normal control fibroblasts, but increased SSBs only in I482Sf. These observations implied that I482Sf are hypersensitive to BSO and no longer sufficiently repair SSBs. Consistent with this notion. I482Sf transfected with both APTX and ligase I had increased resistance to BSO, whereas I482Sf transfected with LacZ vector remained hypersensitive to BSO. We propose that oxidative stress aggravates nuclear import failure, which is already compromised in patient cells. Consequent DNA damage, beyond the limited capacity of DNA repair proteins, i.e., APTX and ligase I, may participate in triggering cell death. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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36. Oxidative DNA double strand breaks and autophagy in the antitumor effect of sterically hindered platinum(II) complexes in NSCLCs
- Author
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Shaohua Gou, Xinyi Wang, Xiufeng Jin, Feihong Chen, and Jian Zhao
- Subjects
0301 basic medicine ,Programmed cell death ,Lung Neoplasms ,DNA Repair ,Organoplatinum Compounds ,Cell Survival ,Antineoplastic Agents ,Apoptosis ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Phosphatidylinositol 3-Kinases ,0302 clinical medicine ,Carcinoma, Non-Small-Cell Lung ,Cell Line, Tumor ,Autophagy ,Moiety ,Animals ,Humans ,DNA Breaks, Double-Stranded ,Cytotoxicity ,Aprataxin ,Membrane Potential, Mitochondrial ,Molecular Structure ,Chemistry ,TOR Serine-Threonine Kinases ,ROS ,Cell Cycle Checkpoints ,Hydrogen Peroxide ,Ligand (biochemistry) ,Xenograft Model Antitumor Assays ,MDC1 ,Disease Models, Animal ,Oxidative Stress ,030104 developmental biology ,Oncology ,Biochemistry ,030220 oncology & carcinogenesis ,MDC1/aprataxin ,Reactive Oxygen Species ,Oxidation-Reduction ,Proto-Oncogene Proteins c-akt ,DNA ,double strand breaks ,Research Paper ,platinum(II) complexes ,N1,N2-diisobutyl moiety ,Signal Transduction - Abstract
// Feihong Chen 1 , Xinyi Wang 1 , Xiufeng Jin 1 , Jian Zhao 1 , Shaohua Gou 1 1 Pharmaceutical Research Center and School of Chemistry and Chemical Engineering, Jiangsu Province Hi-Tech Key Laboratory for Biomedical Research, Southeast University, Nanjing 211189, China Correspondence to: Shaohua Gou, email: sgou@seu.edu.cn Keywords: platinum(II) complexes, N 1 , N 2 -diisobutyl moiety, ROS, double strand breaks, MDC1/aprataxin Received: December 20, 2016 Accepted: February 23, 2017 Published: March 06, 2017 ABSTRACT A series of novel platinum(II) complexes with (1R,2R)-N 1 ,N 2 -diisobutyl-1,2-diaminocyclohexane as a carrier ligand, while N 1 ,N 2 -diisobutyl moiety serving as steric hindrance were designed, synthesized and characterized. The in vitro biological assays demonstrated that complex 3 had increased cytotoxicity against lung cancer cells, especially non-small-cell lung cancer (NSCLC) compared to its mono-substituted complex 3a, indicating that the sterically hindered alkyl moieties have significant influences on its antitumor property. However, the mechanism still remains unclear. The further studies revealed that complex 3 could induce ROS overproduction, severe DNA double strands breaks and inhibit the activation of DNA damage repair proteins within nucleus, leading to cell-cycle arrest and cell death. Moreover, complex 3 could induce autophagy via the accumulation of autophagic vacuoles and alterations of autophagic protein expression. Interestingly, the ROS scavengers, N-acetyl-cysteine (NAC) could reverse complex 3-induced DNA double strands breaks and autophagic responses more significantly compared to complex 3a. The results demonstrated that the ROS generation plays an important role in the DNA double strands breaks and autophagic responses in the antitumor effect of complex 3 with N 1 ,N 2 -diisobutyl moiety. Our study offered a novel therapeutic strategy and put new insights into the anticancer research of the complexes with N 1 ,N 2 -diisobutyl moiety served as steric hindrance.
- Published
- 2017
37. The novel human gene aprataxin is directly involved in DNA single-strand-break repair.
- Author
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Mosesso, P., Piane, M., Palitti, F., Pepe, G., Penna, S., and Chessa, L.
- Subjects
- *
DNA repair , *CHROMOSOME abnormalities , *CAMPTOTHECIN , *ANTINEOPLASTIC agents , *DNA topoisomerase I - Abstract
The cells of an ataxia-oculomotor apraxia type 1 (AOA1) patient, homozygous for a new aprataxin mutation (T739C), were treated with camptothecin, an inhibitor of DNA topoisomerase I which induces DNA single-strand breaks. DNA damage was evaluated by cytogenetic analysis of chromosomal aberrations. The results obtained showed marked and dose-related increases in induced chromosomal aberrations in the patient and her heterozygous mother compared to the intrafamilial wild-type control. The alkaline comet assay confirmed this pattern. Moreover, the AOA1 cells did not show hypersensitivity to ionizing radiation, i.e. X-rays. These findings clearly indicate the direct involvement of aprataxin in the DNA single-strand-break repair machinery. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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38. The FHA domain of aprataxin interacts with the C-terminal region of XRCC1
- Author
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Date, Hidetoshi, Igarashi, Shuichi, Sano, Yasuteru, Takahashi, Toshiaki, Takahashi, Tetsuya, Takano, Hiroki, Tsuji, Shoji, Nishizawa, Masatoyo, and Onodera, Osamu
- Subjects
- *
ATAXIA , *MOVEMENT disorders , *AMINO acids , *ORGANIC acids - Abstract
Abstract: Aprataxin (APTX) is the causative gene product for early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH/AOA1). In our previous study, we found that APTX interacts with X-ray repair cross-complementing group 1 (XRCC1), a scaffold protein with an essential role in single-strand DNA break repair (SSBR). To further characterize the functions of APTX, we determined the domains of APTX and XRCC1 required for the interaction. We demonstrated that the 20 N-terminal amino acids of the FHA domain of APTX are important for its interaction with the C-terminal region (residues 492–574) of XRCC1. Moreover, we found that poly (ADP–ribose) polymerase-1 (PARP-1) is also co-immunoprecipitated with APTX. These findings suggest that APTX, together with XRCC1 and PARP-1, plays an essential role in SSBR. [Copyright &y& Elsevier]
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- 2004
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39. Loss of function mechanism in aprataxin-related early-onset ataxia
- Author
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Hirano, Makito, Furiya, Yoshiko, Kariya, Shingo, Nishiwaki, Tomohisa, and Ueno, Satoshi
- Subjects
- *
GENETICS , *ATAXIA , *PHENOTYPES , *PHYSIOLOGY - Abstract
Early-onset ataxia with ocular motor apraxia and hypoalbuminemia is an autosomal recessive form of cerebellar ataxia that occurs most commonly in Japan but is also frequently seen in Europe. This disease is caused by mutations in the aprataxin gene, but the functions of the gene product and the pathogenic mechanism remain unclear. The present study provides experimental evidence that the histidine triad (HIT) domain in aprataxin has enzymatic activity that is negatively regulated by the intramolecular interaction of the N-terminal domain. Furthermore, the reduction in HIT activity seen in all the disease-causing mutants tested, and the correlation between the reduced activity and the severe phenotype, support that aprataxin’s physiological function is associated with its catalytic activity. Our findings suggest that the clinical phenotypes are caused by a loss of aprataxin function, attributable largely to diminished HIT activity but partially to a reduction in the levels of gene products. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
40. Novel splice variants increase molecular diversity of aprataxin, the gene responsible for early-onset ataxia with ocular motor apraxia and hypoalbuminemia
- Author
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Hirano, Makito, Nishiwaki, Tomohisa, Kariya, Shingo, Furiya, Yoshiko, Kawahara, Makoto, and Ueno, Satoshi
- Subjects
- *
CEREBELLAR ataxia , *APRAXIA , *ATAXIA , *CYTOPLASM , *PROTEINS - Abstract
Early-onset ataxia with ocular motor apraxia and hypoalbuminemia (EAOH) is one of the most common forms of autosomal recessive cerebellar ataxia. We identified six new alternative transcripts produced by the aprataxin gene responsible for EAOH. Total eight transcripts encoded truncated proteins that were located within the nucleus or cytoplasm and showed different binding abilities to wild-type (WT) aprataxin. Thus, the alternative splicing increases the molecular diversity of aprataxin and the expression profiles of these transcripts in various tissues may be related to the tissue-specific phenotypes. [Copyright &y& Elsevier]
- Published
- 2004
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41. Aprataxin mutations are a rare cause of early onset ataxia in Germany.
- Author
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Habeck, Matthias, Zühlke, Christine, Bentele, Karl H. P., Unkelbach, Stephan, Kreß, Wolfram, Bürk, Katrin, Schwinger, Eberhard, and Hellenbroich, Yorck
- Subjects
- *
ATAXIA , *MOVEMENT disorders , *CEREBELLAR ataxia , *PATIENTS , *PSYCHOMOTOR disorders , *GENETICS - Abstract
Aprataxin (APTX) mutations are the cause of ataxia with ocular motor apraxia type 1(AOA1), an autosomal recessive disorder linked to chromosome 9p13.AOA1 seems to be one of the most frequent causes of recessive ataxia in Japan and Portugal. We screened a group of 165 early onset ataxia patients for APTX mutations and detected two non-related patients homozygous for the W293X nonsense mutation. Additionally, we describe several new transcript variants of the APTX gene and discuss their relevance for a sufficient mutation screening. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
42. Rap GTPase Interactor: A Potential Marker for Cancer Prognosis Following Kidney Transplantation
- Author
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Qiang Fu, Fan Yang, Minxue Liao, Noel J. Feeney, Kevin Deng, Nikolaos Serifis, Liang Wei, Hongji Yang, Kai Chen, Shaoping Deng, and James F. Markmann
- Subjects
0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,medicine.medical_treatment ,kidney transplantation ,APTX ,CD8+ T cells ,lcsh:RC254-282 ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Medicine ,Kidney transplantation ,Original Research ,Cause of death ,Aprataxin ,Kidney ,business.industry ,Area under the curve ,kidney cancer ,Cancer ,Immunotherapy ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,business ,Kidney cancer ,RADIL - Abstract
Post-transplant (post-Tx) kidney cancer has become the second-highest cause of death in kidney recipients. Late diagnosis and treatment are the main reasons for high mortality. Further research into early diagnosis and potential treatment is therefore required. In this current study, through genome-wide RNA-Seq profile analysis of post-Tx malignant blood samples and post-Tx non-malignant control blood samples (CTRL-Tx), we found Rap GTPase Interactor (RADIL) and Aprataxin (APTX) to be the most meaningful markers for cancer diagnosis. Receiver operating characteristic (ROC) curve analysis showed that the area under the curve (AUC) of the RADIL-APTX signature model was 0.92 (P < 0.0001). Similarly, the AUC of RADIL alone was 0.91 (P < 0.0001) and that of APTX was 0.81 (P = 0.001). Additionally, using a semi-supervised method, we found that RADIL alone could better predict malignancies in kidney transplantation recipients than APTX alone. Kaplan-Meier analysis indicated that RADIL was expressed significantly higher in the early stages (I and II) of kidney, liver, stomach, and pancreatic cancer, suggesting the potential use of RADIL in early diagnosis. Multivariable Cox regression analysis found that RADIL together with other factors (including age, stage III, stage IV and CD8+ T cells) play a key role in kidney cancer development. Among those factors, RADIL could promote kidney cancer development (HR > 1, P < 0.05) while CD8+ T cells could inhibit kidney cancer development (HR < 1, P < 0.05). RADIL may be a new immunotherapy target for kidney cancer post kidney transplantation.
- Published
- 2019
43. An Intrinsically Disordered APLF Links Ku, DNA-PKcs, and XRCC4-DNA Ligase IV in an Extended Flexible Non-homologous End Joining Complex*
- Author
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Chirayu Chokshi, Alan E. Tomkinson, Shujuan Fang, Yoshihiro Matsumoto, Miaw-Sheue Tsai, Soumya G. Remesh, Sarvan Kumar Radhakrishnan, Monica Kuzdovich, John A. Tainer, Michal Hammel, Susan P. Lees-Miller, and Yaping Yu
- Subjects
0301 basic medicine ,Small Angle ,Models, Molecular ,Ku80 ,DNA End-Joining Repair ,Protein Conformation ,small-angle X-ray scattering (SAXS) ,DNA-Activated Protein Kinase ,Biochemistry ,Medical and Health Sciences ,non-homologous end joining ,Scattering ,Double-Stranded ,DNA Ligase ATP ,X-Ray Diffraction ,Models ,Ku ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,DNA Breaks, Double-Stranded ,DNA-dependent serine/threonine protein kinase (DNA-PK) ,Phosphorylation ,Poly-ADP-Ribose Binding Proteins ,XRCC4 ,DNA-PKcs ,chemistry.chemical_classification ,DNA ligase IV ,Blotting ,Nuclear Proteins ,DNA repair protein XRCC4 ,Biological Sciences ,Chromatin ,Cell biology ,Non-homologous end joining ,DNA-Binding Proteins ,Cross-Linking Reagents ,DNA-dependent serine/threonine protein kinase ,Western ,Protein Binding ,Biochemistry & Molecular Biology ,APLF ,DNA repair ,1.1 Normal biological development and functioning ,Blotting, Western ,Biology ,DNA and Chromosomes ,03 medical and health sciences ,Underpinning research ,Scattering, Small Angle ,Genetics ,Humans ,Immunoprecipitation ,Molecular Biology ,Ku Autoantigen ,Aprataxin ,DNA ligase ,030102 biochemistry & molecular biology ,protein complex ,DNA Breaks ,Molecular ,Cell Biology ,intrinsically disordered protein ,enzymes and coenzymes (carbohydrates) ,030104 developmental biology ,chemistry ,Hela Cells ,small-angle X-ray scattering ,Chemical Sciences ,Generic health relevance ,HeLa Cells - Abstract
© 2016, American Society for Biochemistry and Molecular Biology Inc. All rights reserved. DNA double-strand break (DSB) repair by non-homologous end joining (NHEJ) in human cells is initiated by Ku heterodimer binding to a DSB, followed by recruitment of core NHEJ factors including DNA-dependent protein kinase catalytic subunit (DNA-PKcs), XRCC4-like factor (XLF), and XRCC4 (X4)-DNA ligase IV (L4). Ku also interacts with accessory factors such as aprataxin and polynucleotide kinase/phosphatase-like factor (APLF). Yet, how these factors interact to tether, process, and ligate DSB ends while allowing regulation and chromatin interactions remains enigmatic. Here, small angle X-ray scattering (SAXS) and mutational analyses show APLF is largely an intrinsically disordered protein that binds Ku, Ku/DNA-PKcs (DNA-PK), and X4L4 within an extended flexible NHEJ core complex. X4L4 assembles with Ku heterodimers linked to DNA-PKcs via flexible Ku80 C-terminal regions (Ku80CTR) in a complex stabilized through APLF interactions with Ku, DNA-PK, and X4L4. Collective results unveil the solution architecture of the six-protein complex and suggest cooperative assembly of an extended flexible NHEJ core complex that supports APLF accessibility while possibly providing flexible attachment of the core complex to chromatin. The resulting dynamic tethering furthermore, provides geometric access of L4 catalytic domains to the DNA ends during ligation and of DNA-PKcs for targeted phosphorylation of other NHEJ proteins as well as trans-phosphorylation of DNA-PKcs on the opposing DSB without disrupting the core ligation complex. Overall the results shed light on evolutionary conservation of Ku, X4, and L4 activities, while explaining the observation that Ku80CTR and DNA-PKcs only occur in a subset of higher eukaryotes.
- Published
- 2016
44. miR-424 acts as a tumor radiosensitizer by targeting aprataxin in cervical cancer
- Author
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Yi Qing, Qing Li, Hua Zou, Cheng-Xiong Xu, Wei Xia, Dong Wang, Xiaoyan Dai, Hua Jin, Xia Wang, and Nan Dai
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Radiosensitizer ,cervical cancer ,Cell Survival ,Uterine Cervical Neoplasms ,Apoptosis ,aprataxin ,Radiation Tolerance ,Ectopic Gene Expression ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Internal medicine ,Radioresistance ,Cell Line, Tumor ,microRNA ,medicine ,Animals ,Humans ,Radiosensitivity ,Gene Silencing ,Cervical cancer ,Aprataxin ,business.industry ,Cancer ,miR-424 ,Nuclear Proteins ,medicine.disease ,Xenograft Model Antitumor Assays ,Surgery ,radioresistance ,DNA-Binding Proteins ,Disease Models, Animal ,MicroRNAs ,030104 developmental biology ,030220 oncology & carcinogenesis ,Female ,RNA Interference ,business ,Research Paper - Abstract
// Xia Wang 1, 2, * , Qing Li 3, * , Hua Jin 4 , Hua Zou 3 , Wei Xia 3 , Nan Dai 3 , Xiao-Yan Dai 3 , Dong Wang 3 , Cheng-Xiong Xu 3 , Yi Qing 3 1 Department of Laboratory Medicine, West China Second University Hospital, Sichuan University, Chengdu, Sichuan 610041, China 2 Laboratory of Obstetric and Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, Chengdu, Sichuan 610041, China 3 Cancer Center, Daping Hospital and Research Institute of Surgery, Third Military Medical University, Chongqing 400042, China 4 Department of Thoracic Surgery, Daping Hospital and Research Institute of Surgery, Third Military Medical University, Chongqing 400042, China * These authors have contributed equally to this work Correspondence to: Cheng-Xiong Xu, email: xuchengxiong@hanmail.net Yi Qing, email: qywxbb@hotmail.com Keywords: miR-424, aprataxin, radioresistance, cervical cancer Received: July 05, 2016 Accepted: October 10, 2016 Published: October 18, 2016 ABSTRACT Previous studies have shown that some dysregulated miRNAs are involved in radioresistance of tumor cells. Here, we identified significantly decreased miR-424 expression in radioresistant cervical cancer cells and specimens from cervical cancer patients with radioresistance compared to their radiosensitive parental cells and specimens from radiosensitive patients, respectively. Ectopic expression of miR-424 significantly increased radiation-induced DNA damage, cell apoptosis and G2/M cell cycle arrest in radioresistant cervical cancer cells. Notably, miR-424 agomiR treatment can sensitize radioresistant cervical cancer cells to radiation in a xenograft model. Furthermore, we demonstrated that miR-424 regulated radiosensitivity by directly targeting aprataxin. Taken together, these findings suggest that miR-424 acts as a radiosensitizing miRNA and reveal a new therapeutic strategy for radioresistant cervical cancers.
- Published
- 2016
45. XRCC1 phosphorylation affects aprataxin recruitment and DNA deadenylation activity
- Author
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Donna F. Stefanick, Samuel H. Wilson, Julie K. Horton, Melike Çağlayan, Ming-Lang Zhao, Agnes K. Janoshazi, Rajendra Prasad, and Natalie R. Gassman
- Subjects
0301 basic medicine ,DNA Repair ,DNA repair ,Mutant ,aptX ,Biology ,Biochemistry ,Article ,Cell Line ,03 medical and health sciences ,XRCC1 ,chemistry.chemical_compound ,Mice ,Animals ,Humans ,Phosphorylation ,Molecular Biology ,Aprataxin ,chemistry.chemical_classification ,Nuclear Proteins ,Cell Biology ,DNA ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,Enzyme ,X-ray Repair Cross Complementing Protein 1 ,chemistry ,Protein Processing, Post-Translational ,DNA Damage - Abstract
Aprataxin (APTX) is a DNA-adenylate hydrolase that removes 5′-AMP blocking groups from abortive ligation repair intermediates. XRCC1, a multi-domain protein without catalytic activity, interacts with a number of known repair proteins including APTX, modulating and coordinating the various steps of DNA repair. CK2-phosphorylation of XRCC1 is thought to be crucial for its interaction with the FHA domain of APTX. In light of conflicting reports, the importance of XRCC1 phosphorylation and APTX function is not clear. In this study, a phosphorylation mutant of XRCC1 designed to eliminate APTX binding was stably expressed in Xrcc1−/− cells. Analysis of APTX-GFP accumulation at micro-irradiation damage confirmed that phosphorylated XRCC1 is required for APTX recruitment. APTX-mediated DNA deadenylation activity (i.e., 5′-AMP removal) was measured in extracts of cells expressing wild-type XRCC1 or the XRCC1 phosphorylation mutant, and compared with activity in APTX-deficient and APTX-complemented human cells. APTX activity was lower in extracts from Xrcc1−/− and XRCC1 phosphorylation mutant cells compared to the robust activity in extract from wild-type XRCC1 expressing cells. Taken together, results verify that interaction with phosphorylated XRCC1 is a requirement for significant APTX recruitment to cellular DNA damage and enzymatic activity in cell extracts.
- Published
- 2018
46. A QM/MM study of the 5′-AMP DNA hydrolysis of aprataxin
- Author
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Kyohei Hanaoka, Megumi Kayanuma, Mitsuo Shoji, and Wataru Tanaka
- Subjects
QM/MM ,Aprataxin ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Stereochemistry ,General Physics and Astronomy ,Substrate (chemistry) ,Molecule ,A-DNA ,Protonation ,Physical and Theoretical Chemistry ,DNA - Abstract
Aprataxin is a DNA repair enzyme that hydrolyzes the abnormal 5′-AMP termini of broken DNAs. Based on quantum mechanical/molecular mechanical (QM/MM) calculations, we found that the catalytic reaction proceeds in three steps; substrate protonation, DNA deadenylation and histidine–AMP intermediate hydrolysis. The calculated activation energies for the second and third reactions are 19.0 and 10.5 kcal mol −1 , which can be attributed to a penta-coordinated AMP-phosphoryl formation and closing of a water molecule, respectively. We also found that a histidine–AMP intermediate is hydrolyzed easily in the third step when a water molecule closes within 3 A to the phosphorus nucleus.
- Published
- 2015
47. DNA3′pp5′G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition
- Author
-
Mathieu Chauleau, Stewart Shuman, and Agata Jacewicz
- Subjects
Models, Molecular ,Guanine ,Guanosine ,Biology ,Nucleobase ,03 medical and health sciences ,chemistry.chemical_compound ,Catalytic Domain ,Genetics ,medicine ,Deoxyguanosine ,Inosine ,DNA Primers ,030304 developmental biology ,chemistry.chemical_classification ,Aprataxin ,0303 health sciences ,DNA ligase ,Nucleic Acid Enzymes ,030302 biochemistry & molecular biology ,DNA ,Templates, Genetic ,3. Good health ,Exodeoxyribonucleases ,chemistry ,Biochemistry ,Mutation ,Schizosaccharomyces pombe Proteins ,Nucleoside ,medicine.drug - Abstract
DNA3′pp5′G caps synthesized by the 3′-PO4/5′-OH ligase RtcB have a strong impact on enzymatic reactions at DNA 3′-OH ends. Aprataxin, an enzyme that repairs A5′pp5′DNA ends formed during abortive ligation by classic 3′-OH/5′-PO4 ligases, is also a DNA 3′ de-capping enzyme, converting DNAppG to DNA3′p and GMP. By taking advantage of RtcB's ability to utilize certain GTP analogs to synthesize DNAppN caps, we show that aprataxin hydrolyzes inosine and 6-O-methylguanosine caps, but is not adept at removing a deoxyguanosine cap. We report a 1.5 Å crystal structure of aprataxin in a complex with GMP, which reveals that: (i) GMP binds at the same position and in the same anti nucleoside conformation as AMP; and (ii) aprataxin makes more extensive nucleobase contacts with guanine than with adenine, via a hydrogen bonding network to the guanine O6, N1, N2 base edge. Alanine mutations of catalytic residues His147 and His149 abolish DNAppG de-capping activity, suggesting that the 3′ de-guanylylation and 5′ de-adenylylation reactions follow the same pathway of nucleotidyl transfer through a covalent aprataxin-(His147)–NMP intermediate. Alanine mutation of Asp63, which coordinates the guanosine ribose hydroxyls, impairs DNAppG de-capping.
- Published
- 2015
48. Lack of aprataxin impairs mitochondrial functions via downregulation of the APE1/NRF1/NRF2 pathway
- Author
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Beatriz Garcia-Diaz, Sindhu Krishna, Luis C. López, Catarina M. Quinzii, Ali Naini, Barbara Castellotti, Andrea Balreira, Caterina Mariotti, Emanuele Barca, and Saba Tadesse
- Subjects
Male ,NF-E2-Related Factor 2 ,SDHA ,aptX ,Down-Regulation ,Mitochondrion ,Biology ,medicine.disease_cause ,Downregulation and upregulation ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Genetics ,medicine ,Humans ,NRF1 ,Molecular Biology ,Genetics (clinical) ,Aprataxin ,Mutation ,Nuclear Respiratory Factor 1 ,Genetic Diseases, Inborn ,Nuclear Proteins ,Articles ,General Medicine ,Fibroblasts ,Mitochondria ,DNA-Binding Proteins ,Mitochondrial DNA repair ,Cancer research ,Ataxia ,Female ,Signal Transduction - Abstract
Ataxia oculomotor apraxia type 1 (AOA1) is an autosomal recessive disease caused by mutations in APTX, which encodes the DNA strand-break repair protein aprataxin (APTX). CoQ10 deficiency has been identified in fibroblasts and muscle of AOA1 patients carrying the common W279X mutation, and aprataxin has been localized to mitochondria in neuroblastoma cells, where it enhances preservation of mitochondrial function. In this study, we show that aprataxin deficiency impairs mitochondrial function, independent of its role in mitochondrial DNA repair. The bioenergetics defect in AOA1-mutant fibroblasts and APTX-depleted Hela cells is caused by decreased expression of SDHA and genes encoding CoQ biosynthetic enzymes, in association with reductions of APE1, NRF1 and NRF2. The biochemical and molecular abnormalities in APTX-depleted cells are recapitulated by knockdown of APE1 in Hela cells and are rescued by overexpression of NRF1/2. Importantly, pharmacological upregulation of NRF1 alone by 5-aminoimidazone-4-carboxamide ribonucleotide does not rescue the phenotype, which, in contrast, is reversed by the upregulation of NRF2 by rosiglitazone. Accordingly, we propose that the lack of aprataxin causes reduction of the pathway APE1/NRF1/NRF2 and their target genes. Our findings demonstrate a critical role of APTX in transcription regulation of mitochondrial function and the pathogenesis of AOA1 via a novel pathomechanistic pathway, which may be relevant to other neurodegenerative diseases.
- Published
- 2015
49. Complementation of aprataxin deficiency by base excision repair enzymes
- Author
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Samuel H. Wilson, Rajendra Prasad, Melike Çağlayan, and Julie K. Horton
- Subjects
Cell Extracts ,DNA Repair ,Flap Endonucleases ,DNA repair ,DNA polymerase ,DNA polymerase delta ,Cell Line ,Mice ,Genetics ,Animals ,Humans ,Lyase activity ,DNA Polymerase beta ,Aprataxin ,biology ,Nucleic Acid Enzymes ,Nuclear Proteins ,Processivity ,Base excision repair ,Molecular biology ,Adenosine Monophosphate ,DNA-Binding Proteins ,DNA Repair Enzymes ,Biochemistry ,biology.protein ,Chickens ,Gene Deletion ,Nucleotide excision repair - Abstract
Abortive ligation during base excision repair (BER) leads to blocked repair intermediates containing a 5'-adenylated-deoxyribose phosphate (5'-AMP-dRP) group. Aprataxin (APTX) is able to remove the AMP group allowing repair to proceed. Earlier results had indicated that purified DNA polymerase β (pol β) removes the entire 5'-AMP-dRP group through its lyase activity and flap endonuclease 1 (FEN1) excises the 5'-AMP-dRP group along with one or two nucleotides. Here, using cell extracts from APTX-deficient cell lines, human Ataxia with Oculomotor Apraxia Type 1 (AOA1) and DT40 chicken B cell, we found that pol β and FEN1 enzymatic activities were prominent and strong enough to complement APTX deficiency. In addition, pol β, APTX and FEN1 coordinate with each other in processing of the 5'-adenylated dRP-containing BER intermediate. Finally, other DNA polymerases and a repair factor with dRP lyase activity (pol λ, pol ι, pol θ and Ku70) were found to remove the 5'-adenylated-dRP group from the BER intermediate. However, the activities of these enzymes were weak compared with those of pol β and FEN1.
- Published
- 2015
50. 眼球運動失行と低アルブミン血症を伴う早発型失調症(EAOH)の臨床病型と分子病態メカニズムの解明
- Subjects
single strand break repair ,AOA1 ,aprataxin ,genotype-phenotype correlation ,EAOH - Abstract
脊髄小脳変性症は, 小脳の神経細胞の変性, 脱落による運動失調を呈する神経変性疾患の一群であり, 弧発性, 遺伝性のものに分類できる. 劣性遺伝性の脊髄小脳変性症では, 欧米ではフリードライヒ失調症が最も頻度が高いが, 本邦ではフリードライヒ失調症は存在せず, フリードライヒ失調症と類似の運動症状を示し, 眼球運動失行と低アルブミン血症を伴う早発型失調症(EAOH)が最も頻度が高い. EAOHは, 患者数は少なく稀な疾患であるが, 臨床概念の確立, 原因遺伝子aprataxinの発見, アプラタキシン蛋白の機能解析と基礎研究から臨床まで多くの点で新潟大学の研究者が関わってきた疾患であり, 本学の研究者の研究結果を中心に, 本疾患を紹介させていただいた.
- Published
- 2014
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