38 results on '"Appleby, N."'
Search Results
2. Richter's transformation: Transforming the clinical landscape
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Barrett, A., primary, Appleby, N., additional, Dreau, H., additional, Fox, C.P., additional, Munir, T., additional, and Eyre, T.A., additional
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- 2023
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3. Theme 11 - Cognitive and Psychological Assessment and Support.
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Björkquist, M., Klem Olesen, L., la Cour, K., With, H., Handberg, C., Mioshi, E., Grant, K., Shepstone, L., Nikolajevic-Pujic, S., Knudsen, L., Malmström, N., Jakobsson Larsson, B., Nilsson, S., Öhlén, J., Nygren, I., Andersen, P., Ozanne, A., Appleby, N., Mayberry, E., and McDermott, C.
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PSYCHOLOGICAL tests ,AMYOTROPHIC lateral sclerosis - Abstract
This document, titled "Theme 11 - Cognitive and Psychological Assessment and Support," is a research article published in the journal Amyotrophic Lateral Sclerosis & Frontotemporal Degeneration. It features a large number of authors from various institutions and countries. The article focuses on the assessment and support of cognitive and psychological aspects in individuals with amyotrophic lateral sclerosis (ALS) and frontotemporal degeneration (FTD). It provides valuable insights into the cognitive and psychological challenges faced by individuals with these conditions and highlights the importance of comprehensive assessment and support in managing their care. [Extracted from the article]
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- 2023
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4. Reversal of warfarin anticoagulation using prothrombin complex concentrate at 25 IU kg−1: results of the RAPID study
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Appleby, N., Groarke, E., Crowley, M., Wahab, F. A., McCann, A. M., Egan, L., Gough, D., McMahon, G., OʼDonghaile, D., OʼKeeffe, D., and OʼConnell, N.
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- 2017
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5. Histopathological features and poor clinical outcomes in a predominantly human immunodeficiency virus negative (HIV-) group of patients with plasmablastic lymphoma (PBL): A population based retrospective study: 254
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Appleby, N, Painter, D, Smith, A, Roman, E, Barrans, S, OʼConnor, S, Owen, R, Jack, A, and Tooze, R
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- 2016
6. The Leeds Haematological Malignancy Diagnostic Service Outreach postal monitoring service for patients with indolent Blymphoproliferative and plasma cell disorders: 10-year evaluation of laboratory parameters and symptom self-assessment for early identification of disease progression: 252
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Appleby, N, Painter, D, Smith, A, Martin, V, Greenwood, H, Mountain, C, Jones, R, Owen, R, and Rawstrom, A
- Published
- 2016
7. Fixed vs. variable dosing protocols for prothrombin complex concentrate (PCC) for the emergency reversal of warfarin anticoagulation at two university teaching hospitals: PB 2.49–2
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Appleby, N, Keane, N, OʼRourke, A, Enright, H, Leahy, M, OʼLeary, H, McHugh, J, and OʼKeeffe, D
- Published
- 2013
8. PF376 DIFFERENTIAL GENOMIC AND TRANSCRIPTOMIC EVENTS ASSOCIATED WITH HIGH-GRADE TRANSFORMATION OF CHRONIC LYMPHOCYTIC LEUKEMIA
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Klintman, J., primary, Stamatopoulos, B., additional, Ridout, K., additional, Eyre, T.A., additional, Lopez Pascua, L., additional, Appleby, N., additional, Knight, S., additional, Dreau, H., additional, Ehinger, M., additional, Martín-Subero, J.I., additional, Campo, E., additional, Mansson, R., additional, Rossi, D., additional, Taylor, J., additional, Vavoulis, D.V., additional, and Schuh, A., additional
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- 2019
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9. Construction of a GP integration model
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Batterham, R, Southern, D, Appleby, N, Elsworth, G, Fabris, S, Dunt, D, and Young, D
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- 2002
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10. Reversal of warfarin anticoagulation using prothrombin complex concentrate at 25 IU kg−1: results of the RAPID study
- Author
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Appleby, N., primary, Groarke, E., additional, Crowley, M., additional, Wahab, F. A., additional, McCann, A. M., additional, Egan, L., additional, Gough, D., additional, McMahon, G., additional, O'Donghaile, D., additional, O'Keeffe, D., additional, and O'Connell, N., additional
- Published
- 2016
- Full Text
- View/download PDF
11. Reversal of warfarin anticoagulation using prothrombin complex concentrate at 25 IU kg−1: results of the RAPID study.
- Author
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Appleby, N., Groarke, E., Crowley, M., Wahab, F. A., McCann, A. M., Egan, L., Gough, D., McMahon, G., O'Donghaile, D., O'Keeffe, D., and O'Connell, N.
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- *
PROTHROMBIN , *WARFARIN , *BLOOD coagulation , *MEDICAL protocols , *BLOOD transfusion - Abstract
SUMMARY Background Real-world studies of the emergency reversal of warfarin using 4-factor prothrombin complex concentrate (PCC) report unwarranted delays. The delay to receiving PCC was ≥ 8 h in 46·7% of patients with warfarin-associated bleeding (PWAB) treated with a variable PCC dosing protocol in our retrospective audit. Objective To report the impact of a simplified PCC dosing protocol on the interval to reversal of anticoagulation. Methods We developed a PCC dosing protocol standardising the initial PCC dose and simplifying dosing calculations. Study end points were the proportion of PWAB achieving international normalised ratio (INR) ≤1·5 and treated within 8 h of presentation, respectively. Results Of 17, 15 (88·2%) PWABs achieved a post-treatment INR ≤ 1·5; 14 of 17 (82·4%) PWABs were reversed within 8 h. Median intervals between triage and PCC request and PCC request and start of infusion (administration interval) were 126 min (range 39-520) and 30 min (range 5-100), respectively. Compared with the retrospective cohort, RAPID is associated with an improved administration interval (mean 37·7 vs 76 min, P = 0·031) and the proportion of PWABs treated within 30 min (58·8 vs 6·7%, P = 0·009). Conclusion The RAPID protocol reduces unwarranted delays without compromising efficacy. [ABSTRACT FROM AUTHOR]
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- 2017
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12. AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
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Duran, C., primary, Appleby, N., additional, Clark, T., additional, Wood, D., additional, Imelfort, M., additional, Batley, J., additional, and Edwards, D., additional
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- 2009
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13. 4 Efficacy and safety of once-daily therapeutic dose low molecular weight heparin (tinzaparin sodium) in high-risk pregnancy
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ní Áinle, F., primary, Appleby, N., additional, Wong, A., additional, Regan, C., additional, Byrne, B., additional, and O'Donnell, J., additional
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- 2007
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14. Characterization of murine monoclonal antibodies to the tat protein from human immunodeficiency virus type 1
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Brake, D A, primary, Goudsmit, J, additional, Krone, W J, additional, Schammel, P, additional, Appleby, N, additional, Meloen, R H, additional, and Debouck, C, additional
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- 1990
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15. Integration of primary health care services: perceptions of Australian general practitioners, non-general practitioner health service providers and consumers at the general practice-primary care interface
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Southern, D. M., Young, D., Dunt, D., Appleby, N. J., and Batterham, R. W.
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- 2002
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16. Measuring Health-Related Quality of Life in Amyotrophic Lateral Sclerosis: A Systematic Review and Conceptual Framework.
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McDool E, Carlton J, Powell PA, Coates E, Knox L, Mayberry E, Appleby N, Griffiths AW, Hobson E, and McDermott CJ
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- Humans, Patient Reported Outcome Measures, Amyotrophic Lateral Sclerosis psychology, Amyotrophic Lateral Sclerosis physiopathology, Quality of Life psychology
- Abstract
Background and Objectives: The assessment of health-related quality of life (HRQoL) in patients with amyotrophic lateral sclerosis (ALS) is heterogeneous and inconsistent. The objectives of this study were (1) to develop a comprehensive conceptual framework of HRQoL in ALS and (2) map the content of existing patient-reported outcome measures (PROMs) used in ALS to this novel framework., Methods: Our model of HRQoL in ALS (Health-related Quality of life in Amyotrophic Lateral Sclerosis, QuALS) was developed from a systematic literature review and consultative input from key stakeholders (patients, carers, and health care professionals). Five electronic databases were searched in April 2022. Primary studies of any design that assessed HRQoL in ALS by using a multi-item PROM and/or qualitative methods were identified. Using an a priori framework, HRQoL themes were extracted and iteratively modified from the content of each PROM and qualitative study quotations identified in the literature. The conceptual framework was ratified by stakeholders with lived experience and clinical experts. The QuALS framework was used to map the content of identified PROMs and qualitative studies based on thematic coverage., Results: QuALS covers 3 high-level domains of HRQoL (physical, psychological, and social functioning) and consists of 7 themes (Activities; Physical Health; Autonomy; Cognition; Feelings and Emotions; Self-identity; Relationships), characterized by 42 subthemes. Of 8,220 studies identified, 274 were included in the review that informed QuALS. In these studies, 111 PROMs were used to assess at least 1 aspect of HRQoL, and 11 studies used qualitative methods. Of the 3 high-level domains, physical functioning was the most commonly assessed, particularly within ALS-specific PROMs where almost one-quarter of PROMs exclusively assessed physical functioning. None of the PROMs or qualitative studies identified assessed all aspects of HRQoL in the QuALS framework., Discussion: This study presents a new comprehensive conceptual framework of HRQoL in ALS (QuALS), informed by a robust systematic review of existing literature and stakeholder input, incorporating lived experience. QuALS provides a valuable resource for researchers and clinicians interested in taking a holistic approach to assessing and understanding the full impact of ALS on HRQoL and how this may be affected by treatments.
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- 2024
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17. Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features.
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Robbe P, Ridout KE, Vavoulis DV, Dréau H, Kinnersley B, Denny N, Chubb D, Appleby N, Cutts A, Cornish AJ, Lopez-Pascua L, Clifford R, Burns A, Stamatopoulos B, Cabes M, Alsolami R, Antoniou P, Oates M, Cavalieri D, Gibson J, Prabhu AV, Schwessinger R, Jennings D, James T, Maheswari U, Duran-Ferrer M, Carninci P, Knight SJL, Månsson R, Hughes J, Davies J, Ross M, Bentley D, Strefford JC, Devereux S, Pettitt AR, Hillmen P, Caulfield MJ, Houlston RS, Martín-Subero JI, and Schuh A
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- Humans, Whole Genome Sequencing, Mutation, Genomics, Prognosis, Leukemia, Lymphocytic, Chronic, B-Cell genetics
- Abstract
The value of genome-wide over targeted driver analyses for predicting clinical outcomes of cancer patients is debated. Here, we report the whole-genome sequencing of 485 chronic lymphocytic leukemia patients enrolled in clinical trials as part of the United Kingdom's 100,000 Genomes Project. We identify an extended catalog of recurrent coding and noncoding genetic mutations that represents a source for future studies and provide the most complete high-resolution map of structural variants, copy number changes and global genome features including telomere length, mutational signatures and genomic complexity. We demonstrate the relationship of these features with clinical outcome and show that integration of 186 distinct recurrent genomic alterations defines five genomic subgroups that associate with response to therapy, refining conventional outcome prediction. While requiring independent validation, our findings highlight the potential of whole-genome sequencing to inform future risk stratification in chronic lymphocytic leukemia., (© 2022. The Author(s).)
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- 2022
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18. Cellular Therapy in High-Risk Relapsed/Refractory Chronic Lymphocytic Leukemia and Richter Syndrome.
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Barbanti MC, Appleby N, Kesavan M, and Eyre TA
- Abstract
Despite the development of highly effective, targeted inhibitors of B-cell proliferation and anti-apoptotic pathways in chronic lymphocytic leukemia (CLL), these treatments are not curative, and many patients will develop either intolerance or resistance to these treatments. Transformation of CLL to high-grade lymphoma-the so-called Richter syndrome (RS)-remains a highly chemoimmunotherapy-resistant disease, with the transformation occurring following targeted inhibitors for CLL treatment being particularly adverse. In light of this, cellular therapy in the form of allogenic stem cell transplantation and chimeric antigen receptor T-cell therapy continues to be explored in these entities. We reviewed the current literature assessing these treatment modalities in both high-risk CLL and RS. We also discussed their current limitations and place in treatment algorithms., Competing Interests: NA received speakers fees from Gilead and research funding from Janssen. TE received education honorarium, advisory board honorarium, and travel support from Roche; received honorarium, research support, and travel to scientific conferences from Gilead; received advisory board honorarium from KITE; received honorarium from Janssen; received honorarium and travel to scientific conferences from Abbvie; received honorarium and research funding from AstraZeneca; received advisory board honorarium and a member of trial steering committee from Loxo Oncology; received advisory board honorarium and research funding from Beigene; advisory board honorarium from Incyte; and received Advisory Board Honorarium Secura Bio. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The handling editor JR declared a past co-authorship with the author TE., (Copyright © 2022 Barbanti, Appleby, Kesavan and Eyre.)
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- 2022
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19. Genomic and transcriptomic correlates of Richter transformation in chronic lymphocytic leukemia.
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Klintman J, Appleby N, Stamatopoulos B, Ridout K, Eyre TA, Robbe P, Pascua LL, Knight SJL, Dreau H, Cabes M, Popitsch N, Ehinger M, Martín-Subero JI, Campo E, Månsson R, Rossi D, Taylor JC, Vavoulis DV, and Schuh A
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- Aged, Aged, 80 and over, Antibodies, Monoclonal, Humanized therapeutic use, Antineoplastic Combined Chemotherapy Protocols administration & dosage, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Base Sequence, Clone Cells pathology, Combined Modality Therapy, Cyclophosphamide administration & dosage, DNA Repair, Disease Progression, Doxorubicin administration & dosage, Female, Gene Regulatory Networks, Genes, Neoplasm, Humans, Leukemia, Lymphocytic, Chronic, B-Cell genetics, Lymphoma, Large B-Cell, Diffuse drug therapy, Lymphoma, Large B-Cell, Diffuse genetics, Male, Middle Aged, Mutation, Neoplasm Proteins genetics, Prednisone administration & dosage, Prospective Studies, RNA, Neoplasm biosynthesis, Syndrome, Vincristine administration & dosage, Whole Genome Sequencing, Clonal Evolution genetics, Gene Expression Regulation, Neoplastic genetics, Leukemia, Lymphocytic, Chronic, B-Cell pathology, Lymphoma, Large B-Cell, Diffuse pathology, RNA, Neoplasm genetics, Transcriptome
- Abstract
The transformation of chronic lymphocytic leukemia (CLL) to high-grade B-cell lymphoma is known as Richter syndrome (RS), a rare event with dismal prognosis. In this study, we conducted whole-genome sequencing (WGS) of paired circulating CLL (PB-CLL) and RS biopsies (tissue-RS) from 17 patients recruited into a clinical trial (CHOP-O). We found that tissue-RS was enriched for mutations in poor-risk CLL drivers and genes in the DNA damage response (DDR) pathway. In addition, we identified genomic aberrations not previously implicated in RS, including the protein tyrosine phosphatase receptor (PTPRD) and tumor necrosis factor receptor-associated factor 3 (TRAF3). In the noncoding genome, we discovered activation-induced cytidine deaminase-related and unrelated kataegis in tissue-RS affecting regulatory regions of key immune-regulatory genes. These include BTG2, CXCR4, NFATC1, PAX5, NOTCH-1, SLC44A5, FCRL3, SELL, TNIP2, and TRIM13. Furthermore, differences between the global mutation signatures of pairs of PB-CLL and tissue-RS samples implicate DDR as the dominant mechanism driving transformation. Pathway-based clonal deconvolution analysis showed that genes in the MAPK and DDR pathways demonstrate high clonal-expansion probability. Direct comparison of nodal-CLL and tissue-RS pairs from an independent cohort confirmed differential expression of the same pathways by RNA expression profiling. Our integrated analysis of WGS and RNA expression data significantly extends previous targeted approaches, which were limited by the lack of germline samples, and it facilitates the identification of novel genomic correlates implicated in RS transformation, which could be targeted therapeutically. Our results inform the future selection of investigative agents for a UK clinical platform study. This trial was registered at www.clinicaltrials.gov as #NCT03899337., (© 2021 by The American Society of Hematology.)
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- 2021
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20. The STELLAR trial protocol: a prospective multicentre trial for Richter's syndrome consisting of a randomised trial investigation CHOP-R with or without acalabrutinib for newly diagnosed RS and a single-arm platform study for evaluation of novel agents in relapsed disease.
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Appleby N, Eyre TA, Cabes M, Jackson A, Boucher R, Yates F, Fox S, Rawstron A, Hillmen P, and Schuh A
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- Adolescent, Adult, Aged, Antineoplastic Combined Chemotherapy Protocols adverse effects, Benzamides adverse effects, Cyclophosphamide administration & dosage, Cyclophosphamide adverse effects, Disease-Free Survival, Doxorubicin administration & dosage, Doxorubicin adverse effects, Drug Administration Schedule, Female, Humans, Male, Middle Aged, Prednisone administration & dosage, Prednisone adverse effects, Prospective Studies, Pyrazines adverse effects, Recurrence, Research Design, Rituximab administration & dosage, Rituximab adverse effects, Treatment Outcome, Vincristine administration & dosage, Vincristine adverse effects, Young Adult, Antineoplastic Combined Chemotherapy Protocols administration & dosage, Benzamides administration & dosage, Lymphoma, Large B-Cell, Diffuse drug therapy, Pyrazines administration & dosage
- Abstract
Background: Transformation of chronic lymphocytic leukaemia (CLL) to diffuse large B-cell lymphoma (DLCBL) type Richter's syndrome (RS) carries a dismal prognosis. Standard-of-care chemoimmunotherapy for de novo RS is inadequate with median survival of less than one year. Patients are frequently elderly or have co-morbidities limiting dose-intense chemotherapy. Treatment of relapsed/refractory (R/R) RS and RS emerging after CLL-directed therapy represent urgent unmet clinical needs. Agents targeting Bruton's tyrosine kinase (BTK) deliver improved outcomes for patients with high-risk CLL and expand effective treatments to frailer patients. Acalabrutinib is an oral, second-generation BTK inhibitor with a favourable toxicity profile and demonstrated activity in CLL and B-cell lymphomas. Combination of acalabrutinib with standard-of-care CHOP-R chemoimmunotherapy offers a sound rationale to test in a prospective trial for de novo RS., Methods: The prospective multicentre STELLAR study is designed in two elements, consisting of a randomised study to evaluate the safety and activity of CHOP-R chemoimmunotherapy in combination with acalabrutinib in newly diagnosed RS and single-arm studies of novel agents for other RS patient cohorts. Eligible patients with newly diagnosed DLBCL-type RS are randomised between six cycles of CHOP-R therapy and six cycles CHOP-R plus acalabrutinib, followed by acalabrutinib maintenance. The primary endpoint of the randomised component is progression free survival (PFS). Cohort 1 enrols RS patients with progressive disease following chemoimmunotherapy for acalabrutinib monotherapy. Patients with RS diagnosed while on ibrutinib may enrol in Cohort 2, a single-arm study of CHOP-R plus acalabrutinib. The primary endpoint for the single-arm studies is overall response rate (ORR). Secondary endpoints for all cohorts are overall survival (OS), quality of life and proportion of patients proceeding to stem cell transplantation. The study will be accompanied by exploratory analysis of the mutational landscape of RS and the relationship between dynamic changes in sequential circulating tumour DNA samples and clinical outcomes., Discussion: The STELLAR randomised trial evaluates the role of CHOP-R plus acalabrutinib in newly diagnosed RS patients. The single-arm platform studies enable the incorporation of promising novel therapies into the protocol. The STELLAR study has potential to identify novel biomarkers of treatment response in this high-risk malignancy., Trial Registration: EudraCT: 2017-004401-40 , registered on the 31-Oct-2017. IRSCTN: https://www.isrctn.com/ISRCTN52839057 , registered on the 04-Mar-2019. ClinicalTrials.gov : NCT03899337 , registered on 02-April-2019.
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- 2019
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21. FIP1L1-PDGFRα p.T674I-D842L: A Novel and Ponatinib Resistant Compound Mutation in FIP1L1-PDGFRα Positive Leukemia.
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Lierman E, Smits S, Appleby N, Conneally E, Michaux L, and Vandenberghe P
- Abstract
Competing Interests: The authors declare no conflicts of interest.
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- 2019
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22. Guideline for the treatment of chronic lymphocytic leukaemia: A British Society for Haematology Guideline.
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Schuh AH, Parry-Jones N, Appleby N, Bloor A, Dearden CE, Fegan C, Follows G, Fox CP, Iyengar S, Kennedy B, McCarthy H, Parry HM, Patten P, Pettitt AR, Ringshausen I, Walewska R, and Hillmen P
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- Antineoplastic Agents adverse effects, Antineoplastic Combined Chemotherapy Protocols adverse effects, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Contraindications, Drug, Frailty, Hematopoietic Stem Cell Transplantation methods, Humans, Leukemia, Lymphocytic, Chronic, B-Cell genetics, Mutation, Palliative Care methods, Randomized Controlled Trials as Topic, Recurrence, Tumor Suppressor Protein p53 genetics, Antineoplastic Agents therapeutic use, Leukemia, Lymphocytic, Chronic, B-Cell drug therapy
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- 2018
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23. Risk adjusted therapy in chronic lymphocytic leukemia: a phase II cancer trials Ireland (CTRIAL-IE [ICORG 07-01]) study of fludarabine, cyclophosphamide, and rituximab therapy evaluating response adapted, abbreviated frontline therapy with FCR in non-del(17p) CLL.
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Appleby N, O'Brien D, Quinn FM, Smyth L, Kelly J, Parker I, Scott K, Cahill MR, Crotty G, Enright H, Hennessy B, Hodgson A, Leahy M, O'Leary H, O'Dwyer M, Hayat A, and Vandenberghe EA
- Subjects
- Adult, Aged, Antineoplastic Combined Chemotherapy Protocols adverse effects, Cyclophosphamide administration & dosage, DNA Mutational Analysis, Female, Humans, Immunophenotyping, In Situ Hybridization, Fluorescence, Leukemia, Lymphocytic, Chronic, B-Cell diagnosis, Leukemia, Lymphocytic, Chronic, B-Cell mortality, Male, Middle Aged, Neoplasm Staging, Neoplasm, Residual, Rituximab administration & dosage, Survival Analysis, Treatment Outcome, Vidarabine administration & dosage, Vidarabine analogs & derivatives, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Chromosome Aberrations, Chromosomes, Human, Pair 17, Leukemia, Lymphocytic, Chronic, B-Cell drug therapy, Leukemia, Lymphocytic, Chronic, B-Cell genetics
- Abstract
Minimal residual disease negative complete response (MRD-negative CR) provides an early marker for time to treatment failure (TTF) in CLL treated with fludarabine, cyclophosphamide, and rituximab (FCR). MRD was assessed after four FCR cycles (FCR4); MRD-negative CR patients discontinued treatment. Fifty-two patients (35M; 17F) were enrolled. Eighteen (18/52; 34.6%) patients reached MRD-negative CR after FCR4 and 29/52 (55.8%) were MRD-negative CR at end of treatment (EOT). Median TTF was 71.1 months (95% CI 61.3-84.1 months), with median overall survival not reached. Mutated immunoglobulin heavy chain gene rearrangements (IGHV) were associated with early MRD-negative remissions, translating into prolonged TTF. Unmutated-IGHV, mutated-SF3B1 and mutated-NOTCH1 were associated with shortened TTF. No TTF difference was observed between patients in MRD-negative CR after four versus six cycles (82.2 versus 85.3 months, p = .6306). Abbreviated FCR therapy is effective for patients achieving early MRD-negative remissions. Interim MRD assessment assists in personalizing therapy and reducing chemotherapy-associated toxicity.
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- 2018
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24. Severe platelet dysfunction in NHL patients receiving ibrutinib is absent in patients receiving acalabrutinib.
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Bye AP, Unsworth AJ, Desborough MJ, Hildyard CAT, Appleby N, Bruce D, Kriek N, Nock SH, Sage T, Hughes CE, and Gibbins JM
- Abstract
The Bruton tyrosine kinase (Btk) inhibitor ibrutinib induces platelet dysfunction and causes increased risk of bleeding. Off-target inhibition of Tec is believed to contribute to platelet dysfunction and other side effects of ibrutinib. The second-generation Btk inhibitor acalabrutinib was developed with improved specificity for Btk over Tec. We investigated platelet function in patients with non-Hodgkin lymphoma (NHL) receiving ibrutinib or acalabrutinib by aggregometry and by measuring thrombus formation on collagen under arterial shear. Both patient groups had similarly dysfunctional aggregation responses to collagen and collagen-related peptide, and comparison with mechanistic experiments in which platelets from healthy donors were treated with the Btk inhibitors suggested that both drugs inhibit platelet Btk and Tec at physiological concentrations. Only ibrutinib caused dysfunctional thrombus formation, whereas size and morphology of thrombi following acalabrutinib treatment were of normal size and morphology. We found that ibrutinib but not acalabrutinib inhibited Src family kinases, which have a critical role in platelet adhesion to collagen that is likely to underpin unstable thrombus formation observed in ibrutinib patients. We found that platelet function was enhanced by increasing levels of von Willebrand factor (VWF) and factor VIII (FVIII) ex vivo by addition of intermediate purity FVIII (Haemate P) to blood from patients, resulting in consistently larger thrombi. We conclude that acalabrutinib avoids major platelet dysfunction associated with ibrutinib therapy, and platelet function may be enhanced in patients with B-cell NHL by increasing plasma VWF and FVIII., Competing Interests: Conflict-of-interest disclosure: The authors declare no competing financial interests.
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- 2017
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25. Clinical and laboratory assessment of a patient with thrombocytosis.
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Appleby N and Angelov D
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- Diagnosis, Differential, Humans, Myeloproliferative Disorders blood, Platelet Count, Risk Factors, Blood Platelets physiology, Disease Management, Myeloproliferative Disorders complications, Thrombocytosis blood, Thrombocytosis diagnosis, Thrombocytosis etiology
- Abstract
Elevated platelet counts are frequently encountered in hospital medicine and arise from both physiological and pathological mechanisms. Thrombocytosis may be secondary, reflecting an inflammatory state, iron deficiency, recent surgery or point towards an underlying neoplasm. Thrombocytosis may be the presenting sign of solid tumours and haematological conditions. The discovery of the activating mutations affecting thrombopoiesis led to greater understanding of the pathobiology of essential thrombocythaemia and other myeloproliferative neoplasms. The investigation of suspected primary thrombocytosis has evolved to include testing for these disease-associated mutations. Therapy for patients with essential thrombocythaemia aims to reduce their risk of thrombotic complications by addressing cardiovascular risk factors, and using antiplatelet agents and, in selected patients, cytoreductive therapy. This article provides a logical approach to distinguishing reactive or secondary thrombocytosis from thrombocytosis associated with an underlying myeloproliferative neoplasm and gives an overview of the management of essential thrombocythaemia.
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- 2017
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26. Simulated Microgravity Exerts an Age-Dependent Effect on the Differentiation of Cardiovascular Progenitors Isolated from the Human Heart.
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Fuentes TI, Appleby N, Raya M, Bailey L, Hasaniya N, Stodieck L, and Kearns-Jonker M
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- Aged, Cell Count, Cell Movement drug effects, DNA Repair genetics, Extracellular Signal-Regulated MAP Kinases metabolism, Gene Expression Profiling, Gene Expression Regulation drug effects, Humans, Infant, Newborn, Intercellular Signaling Peptides and Proteins pharmacology, MicroRNAs genetics, MicroRNAs metabolism, Middle Aged, Phosphorylation drug effects, Proto-Oncogene Proteins c-akt metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Stem Cells drug effects, Stem Cells enzymology, Aging physiology, Cell Differentiation drug effects, Cell Separation methods, Myocardium cytology, Stem Cells cytology, Weightlessness Simulation
- Abstract
Microgravity has a profound effect on cardiovascular function, however, little is known about the impact of microgravity on progenitors that reside within the heart. We investigated the effect of simulated microgravity exposure on progenitors isolated from the neonatal and adult human heart by quantifying changes in functional parameters, gene expression and protein levels after 6-7 days of 2D clinorotation. Utilization of neonatal and adult cardiovascular progenitors in ground-based studies has provided novel insight into how microgravity may affect cells differently depending on age. Simulated microgravity exposure did not impact AKT or ERK phosphorylation levels and did not influence cell migration, but elevated transcripts for paracrine factors were identified in neonatal and adult cardiovascular progenitors. Age-dependent responses surfaced when comparing the impact of microgravity on differentiation. Endothelial cell tube formation was unchanged or increased in progenitors from adults whereas neonatal cardiovascular progenitors showed a decline in tube formation (p<0.05). Von Willebrand Factor, an endothelial differentiation marker, and MLC2v and Troponin T, markers for cardiomyogenic differentiation, were elevated in expression in adult progenitors after simulated microgravity. DNA repair genes and telomerase reverse transcriptase which are highly expressed in early stem cells were increased in expression in neonatal but not adult cardiac progenitors after growth under simulated microgravity conditions. Neonatal cardiac progenitors demonstrated higher levels of MESP1, OCT4, and brachyury, markers for early stem cells. MicroRNA profiling was used to further investigate the impact of simulated microgravity on cardiovascular progenitors. Fifteen microRNAs were significantly altered in expression, including microRNAs-99a and 100 (which play a critical role in cell dedifferentiation). These microRNAs were unchanged in adult cardiac progenitors. The effect of exposure to simulated microgravity in cardiovascular progenitors is age-dependent. Adult cardiac progenitors showed elevated expression of markers for endothelial and cardiomyogenic differentiation whereas neonatal progenitors acquired characteristics of dedifferentiating cells.
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- 2015
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27. Symptomatic BK virus reactivation following fludarabine, cyclophosphamide and rituximab chemotherapy for chronic lymphocytic leukemia/small lymphocytic lymphoma.
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Appleby N, Dillon A, Arrigan M, Fennell J, Crowley B, Hayden PJ, and Enright H
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- Aged, Antineoplastic Combined Chemotherapy Protocols therapeutic use, BK Virus drug effects, Cystitis diagnosis, Cystitis drug therapy, Cystitis virology, Female, Humans, Leukemia, Lymphocytic, Chronic, B-Cell diagnosis, Leukemia, Lymphocytic, Chronic, B-Cell drug therapy, Male, Middle Aged, Treatment Outcome, BK Virus physiology, Leukemia, Lymphocytic, Chronic, B-Cell virology, Polyomavirus Infections virology, Tumor Virus Infections virology, Virus Activation drug effects
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- 2014
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28. Human neonatal cardiovascular progenitors: unlocking the secret to regenerative ability.
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Fuentes TI, Appleby N, Tsay E, Martinez JJ, Bailey L, Hasaniya N, and Kearns-Jonker M
- Subjects
- Adult, Adult Stem Cells drug effects, Adult Stem Cells metabolism, Age Factors, Cell Differentiation, Cell Proliferation drug effects, Cells, Cultured, Gene Expression Profiling, Gene Expression Regulation, Developmental, Humans, Infant, Newborn, Intercellular Signaling Peptides and Proteins pharmacology, LIM-Homeodomain Proteins genetics, LIM-Homeodomain Proteins metabolism, MicroRNAs metabolism, Myocardium metabolism, Myocardium pathology, Myocytes, Cardiac drug effects, Myocytes, Cardiac metabolism, Proto-Oncogene Proteins c-kit genetics, Proto-Oncogene Proteins c-kit metabolism, Receptors, Growth Factor genetics, Receptors, Growth Factor metabolism, Signal Transduction, Stem Cell Transplantation, Transcription Factors genetics, Transcription Factors metabolism, Adult Stem Cells cytology, Epigenesis, Genetic, MicroRNAs genetics, Myocytes, Cardiac cytology, Regeneration genetics
- Abstract
Although clinical benefit can be achieved after cardiac transplantation of adult c-kit+ or cardiosphere-derived cells for myocardial repair, these stem cells lack the regenerative capacity unique to neonatal cardiovascular stem cells. Unraveling the molecular basis for this age-related discrepancy in function could potentially transform cardiovascular stem cell transplantation. In this report, clonal populations of human neonatal and adult cardiovascular progenitor cells were isolated and characterized, revealing the existence of a novel subpopulation of endogenous cardiovascular stem cells that persist throughout life and co-express both c-kit and isl1. Epigenetic profiling identified 41 microRNAs whose expression was significantly altered with age in phenotypically-matched clones. These differences were correlated with reduced proliferation and a limited capacity to invade in response to growth factor stimulation, despite high levels of growth factor receptor on progenitors isolated from adults. Further understanding of these differences may provide novel therapeutic targets to enhance cardiovascular regenerative capacity.
- Published
- 2013
- Full Text
- View/download PDF
29. Efficient generation of integration-free ips cells from human adult peripheral blood using BCL-XL together with Yamanaka factors.
- Author
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Su RJ, Baylink DJ, Neises A, Kiroyan JB, Meng X, Payne KJ, Tschudy-Seney B, Duan Y, Appleby N, Kearns-Jonker M, Gridley DS, Wang J, Lau KH, and Zhang XB
- Subjects
- Adult, Animals, Antigens, CD34 metabolism, Blood Cells metabolism, Cell Differentiation, Cell Lineage, Cellular Reprogramming, Fetal Blood cytology, Genetic Vectors genetics, Humans, Induced Pluripotent Stem Cells metabolism, Kruppel-Like Factor 4, Lentivirus genetics, Mice, Plasmids metabolism, Blood Cells cytology, Cell Culture Techniques methods, Induced Pluripotent Stem Cells cytology, Transcription Factors metabolism, bcl-X Protein metabolism
- Abstract
The ability to efficiently generate integration-free induced pluripotent stem cells (iPSCs) from the most readily available source-peripheral blood-has the potential to expedite the advances of iPSC-based therapies. We have successfully generated integration-free iPSCs from cord blood (CB) CD34(+) cells with improved oriP/EBNA1-based episomal vectors (EV) using a strong spleen focus forming virus (SFFV) long terminal repeat (LTR) promoter. Here we show that Yamanaka factors (OCT4, SOX2, MYC, and KLF4)-expressing EV can also reprogram adult peripheral blood mononuclear cells (PBMNCs) into pluripotency, yet at a very low efficiency. We found that inclusion of BCL-XL increases the reprogramming efficiency by approximately 10-fold. Furthermore, culture of CD3(-)/CD19(-) cells or T/B cell-depleted MNCs for 4-6 days led to the generation of 20-30 iPSC colonies from 1 ml PB, an efficiency that is substantially higher than previously reported. PB iPSCs express pluripotency markers, form teratomas, and can be induced to differentiate in vitro into mesenchymal stem cells, cardiomyocytes, and hepatocytes. Used together, our optimized factor combination and reprogramming strategy lead to efficient generation of integration-free iPSCs from adult PB. This discovery has potential applications in iPSC banking, disease modeling and regenerative medicine.
- Published
- 2013
- Full Text
- View/download PDF
30. Isolation, Characterization, and Spatial Distribution of Cardiac Progenitor Cells in the Sheep Heart.
- Author
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Hou X, Appleby N, Fuentes T, Longo LD, Bailey LL, Hasaniya N, and Kearns-Jonker M
- Abstract
Background: Laboratory large animal models are important for establishing the efficacy of stem cell therapies that may be translated into clinical use. The similarity of ovine and human cardiovascular systems provides an opportunity to use the sheep as a large animal model in which to optimize cell-based treatments for the heart. Recent clinical trials in humans using endogenous cardiovascular progenitor cells report significant improvement in cardiac function following stem cell-based therapy. To date, however, endogenous cardiovascular progenitor cells have not been isolated from the sheep heart., Methods: Cardiovascular cells expressing SSEA-4, CD105 and c-kit were isolated by flow cytometry and cloned from the right atrium of neonatal sheep. The expression of GATA-4, c-kit, and Isl1 was identified by PCR in the cloned cells. Immunohistochemical staining was used to compare the number of SSEA-4 positive cells in the right auricle, right atrium, left ventricle and the apex of the heart of fetal, neonatal and adult sheep. The number of SSEA4+cells was also compared in fetal, pregnant and non-pregnant adult sheep., Results: Four distinct cardiac progenitor cell sub-populations were identified in sheep, including CD105+SSEA-4+c-kit+Isl1+GATA-4+cells, CD105+SSEA-4+c-kit+Isl1+GATA-4-cells, CD105+SSEA-4-c-kit-Isl1+GATA-4-cells, and CD105+SSEA-4-c-kit+Isl1+GATA-4-cells. Immunohistochemical staining for SSEA-4 showed that labeled cells were most abundant in the right atrium of fetal hearts where niches of progenitor cells could be identified., Conclusion: We determined the phenotype and distribution of cardiac progenitor cells in the sheep heart. The availability of cloned endogenous cardiac progenitor cells from sheep will provide a valuable resource for optimizing the conditions for cardiac repair in the ovine model.
- Published
- 2012
31. Future tools for association mapping in crop plants.
- Author
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Duran C, Eales D, Marshall D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Appleby N, Batley J, Basford K, and Edwards D
- Subjects
- Base Sequence, DNA, Plant genetics, Expressed Sequence Tags, Genetic Markers genetics, Polymorphism, Single Nucleotide, Sequence Analysis, DNA, Chromosome Mapping methods, Crops, Agricultural genetics, Genome, Plant, Genome-Wide Association Study methods
- Abstract
Association mapping currently relies on the identification of genetic markers. Several technologies have been adopted for genetic marker analysis, with single nucleotide polymorphisms (SNPs) being the most popular where a reasonable quantity of genome sequence data are available. We describe several tools we have developed for the discovery, annotation, and visualization of molecular markers for association mapping. These include autoSNPdb for SNP discovery from assembled sequence data; TAGdb for the identification of gene specific paired read Illumina GAII data; CMap3D for the comparison of mapped genetic and physical markers; and BAC and Gene Annotator for the online annotation of genes and genomic sequences.
- Published
- 2010
- Full Text
- View/download PDF
32. Single nucleotide polymorphism discovery in barley using autoSNPdb.
- Author
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Duran C, Appleby N, Vardy M, Imelfort M, Edwards D, and Batley J
- Subjects
- DNA, Plant genetics, Databases, Genetic, Genetic Markers, Internet, Sequence Alignment, User-Computer Interface, Hordeum genetics, Polymorphism, Single Nucleotide, Sequence Analysis, DNA methods, Software
- Abstract
Molecular markers are used to provide the link between genotype and phenotype, for the production of molecular genetic maps and to assess genetic diversity within and between related species. Single nucleotide polymorphisms (SNPs) are the most abundant molecular genetic marker. SNPs can be identified in silico, but care must be taken to ensure that the identified SNPs reflect true genetic variation and are not a result of errors associated with DNA sequencing. The SNP detection method autoSNP has been developed to identify SNPs from sequence data for any species. Confidence in the predicted SNPs is based on sequence redundancy, and haplotype co-segregation scores are calculated for a further independent measure of confidence. We have extended the autoSNP method to produce autoSNPdb, which integrates SNP and gene annotation information with a graphical viewer. We have applied this software to public barley expressed sequences, and the resulting database is available over the Internet. SNPs can be viewed and searched by sequence, functional annotation or predicted synteny with a reference genome, in this case rice. The correlation between SNPs and barley cultivar, expressed tissue type and development stage has been collated for ease of exploration. An average of one SNP per 240 bp was identified, with SNPs more prevalent in the 5' regions and simple sequence repeat (SSR) flanking sequences. Overall, autoSNPdb can provide a wealth of genetic polymorphism information for any species for which sequence data are available.
- Published
- 2009
- Full Text
- View/download PDF
33. New technologies for ultra-high throughput genotyping in plants.
- Author
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Appleby N, Edwards D, and Batley J
- Subjects
- DNA, Plant genetics, Genetic Markers, Genetic Variation, Genotype, Minisatellite Repeats, Molecular Biology methods, Polymorphism, Single Nucleotide, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Plants genetics
- Abstract
Molecular genetic markers represent one of the most powerful tools for the analysis of plant genomes and the association of heritable traits with underlying genetic variation. Molecular marker technology has developed rapidly over the last decade, with the development of high-throughput genotyping methods. Two forms of sequence-based marker, simple sequence repeats (SSRs), also known as microsatellites and single nucleotide polymorphisms (SNPs) now predominate applications in modern plant genetic analysis, along the anonymous marker systems such as amplified fragment length polymorphisms (AFLPs) and diversity array technology (DArT). The reducing cost of DNA sequencing and increasing availability of large sequence data sets permits the mining of this data for large numbers of SSRs and SNPs. These may then be used in applications such as genetic linkage analysis and trait mapping, diversity analysis, association studies and marker-assisted selection. Here, we describe automated methods for the discovery of molecular markers and new technologies for high-throughput, low-cost molecular marker genotyping. Genotyping examples include multiplexing of SSRs using Multiplex-Ready marker technology (MRT); DArT genotyping; SNP genotyping using the Invader assay, the single base extension (SBE), oligonucleotide ligation assay (OLA) SNPlex system, and Illumina GoldenGate and Infinium methods.
- Published
- 2009
- Full Text
- View/download PDF
34. Efficacy and safety of once daily low molecular weight heparin (tinzaparin sodium) in high risk pregnancy.
- Author
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Ní Ainle F, Wong A, Appleby N, Byrne B, Regan C, Hassan T, Milner M, Sullivan AO, White B, and O'Donnell J
- Subjects
- Adult, Cohort Studies, Dose-Response Relationship, Drug, Drug Administration Schedule, Female, Fibrinolytic Agents adverse effects, Fibrinolytic Agents blood, Heparin, Low-Molecular-Weight adverse effects, Heparin, Low-Molecular-Weight blood, Humans, Pregnancy, Pregnancy Complications, Hematologic blood, Pregnancy Complications, Hematologic drug therapy, Pregnancy Outcome, Pregnancy, High-Risk, Retrospective Studies, Tinzaparin, Venous Thromboembolism blood, Venous Thromboembolism drug therapy, Young Adult, Fibrinolytic Agents administration & dosage, Heparin, Low-Molecular-Weight administration & dosage, Pregnancy Complications, Hematologic prevention & control, Venous Thromboembolism prevention & control
- Abstract
Low molecular weight heparin (LMWH) is widely regarded as the anticoagulant treatment of choice for the prevention and treatment of venous thromboembolism during pregnancy. However, previous studies have demonstrated that the pharmacokinetic profiles of LMWH vary significantly with increasing gestation. Consequently, it remains unclear whether LMWH regimens recommended for use in nonpregnant individuals can be safely extrapolated to pregnant women. The aims of this study were to assess the safety and the efficacy of tinzaparin sodium (Innohep) administered only once daily during pregnancy. A systematic retrospective review identified a cohort of 37 high-risk pregnancies which had been managed using tinzaparin 175 IU/kg once daily. In 26 cases, the index pregnancy had been complicated by development of an acute venous thromboembolism (17 deep vein thrombosis and nine pulmonary embolism). For each individual, case notes were examined and data extracted using a predetermined questionnaire. No episodes of recurrent venous thromboembolism were identified amongst this cohort of pregnancies managed using once daily LMWH administration. However, two unusual thrombotic complications were observed, including a parietal infarct in one patient, and a postpartum cerebral venous thrombosis in another. Once daily tinzaparin was well tolerated, with no cases of heparin-induced thrombocytopaenia, symptomatic osteoporosis, or foetal malformations. Tinzaparin dose modification based upon peak anti-Xa levels occurred in 45% of the cases examined. The present study is the largest study to have examined the clinical efficacy of once daily LMWH for use in pregnant women at high risk of venous thromboembolism. Our data support the safety and efficacy of antenatal tinzaparin at a dose of 175 IU/kg. In order to determine whether this once daily regimen provides equivalent (or indeed greater) thromboprophylaxis to twice daily LMWH regimens during pregnancy will require highly powered direct comparative studies.
- Published
- 2008
- Full Text
- View/download PDF
35. Integration from the Australian GP's perspective.
- Author
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Southern DM, Appleby NJ, and Young D
- Subjects
- Australia, Humans, Interprofessional Relations, Delivery of Health Care, Integrated, Family Practice organization & administration, Patient Care Team
- Abstract
Objective: To report on what general practitioners' perceptions are about their role in relation to activities that support integration and what they are doing., Method: General practitioner perceived integrative behaviour was measured using a survey containing 114 statements about, 'what constitutes a well integrated GP'. Four hundred and forty-eight GPs were randomly sampled from the Health Insurance Commission (HIC) Medicare billing database in 1996. A response rate of 47% was obtained, yielding 208 surveys for analysis., Results: General practitioners reported integrative activities such as being accessible to patients and working within a multidisciplinary team as currently occurring optimally. Not occurring optimally were: hospital and community involvement; participation in local projects; student education; and payment for working with others. Rural practitioners reported significantly more hospital and community involvement compared with metropolitan practitioners. Less than one-third of GPs reported that they were linked to other services by computer and used a computer for storage/communication of patient information., Discussion: There are many obstacles preventing integrative activities in daily general practice. Policy and attitudinal changes as well as financial incentives are required to enable GPs to practise in an integrated manner. Infrastructure support to encourage GP education, training and information technology are essential to improve GP integration. Many such initiatives are currently in progress, and will require future evaluation. Findings from this 1996 survey will provide some useful baseline information assisting with future evaluation studies.
- Published
- 2001
36. General practice integration in Australia. Primary health services provider and consumer perceptions of barriers and solutions.
- Author
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Appleby NJ, Dunt D, Southern DM, and Young D
- Subjects
- Australia, Female, Focus Groups, Health Care Reform, Humans, Male, Provider-Sponsored Organizations, Consumer Behavior statistics & numerical data, Delivery of Health Care, Integrated organization & administration, Family Practice organization & administration, Primary Health Care organization & administration
- Abstract
Objective: To identify practical examples of barriers and possible solutions to improve general practice integration with other health service providers., Method: Twelve focus groups, including one conducted by teleconference, were held across Australia with GPs and non GP primary health service providers between May and September, 1996. Focus groups were embedded within concept mapping sessions, which were used to conceptually explore the meaning of integration in general practice. Data coding, organising and analysis were based on the techniques documented by Huberman and Miles., Results: Barriers to integration were perceived to be principally due to the role and territory disputes between the different levels of government and their services, the manner in which the GP's role is currently defined, and the system of GP remuneration. Suggestions on ways to improve integration involved two types of strategies. The first involves initiatives implemented 'top down' through major government reform to service structures, including the expansion of the role of divisions of general practice, and structural changes to the GP remuneration systems. The second type of strategy suggested involves initiatives implemented from the 'bottom up' involving services such as hospitals (e.g. additional GP liaison positions) and the use of information technology to link services and share appropriate patient data., Conclusion: The findings support the need for further research and evaluation of initiatives aimed at achieving general practice integration at a systems level. There is little evidence to suggest which types of initiatives improve integration. However, general practice has been placed in the centre of the health care debate and is likely to remain central to the success of such initiatives. Clarification of the future role and authority of general practice will therefore be required if such integrative strategies are to be successful at a wider health system level.
- Published
- 1999
37. The concept mapping method. An alternative to focus group inquiry in general practice.
- Author
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Southern DM, Batterham RW, Appleby NJ, Young D, Dunt D, and Guibert R
- Subjects
- Australia, Clinical Competence, Data Collection methods, Data Interpretation, Statistical, Focus Groups, Health Knowledge, Attitudes, Practice, Humans, Models, Theoretical, Surveys and Questionnaires, Family Practice methods, Interviews as Topic methods, Physician-Patient Relations
- Abstract
Background: The concept mapping rationale and process are explained step by step. The concept mapping method produces a two dimensional conceptual map of ideas produced by the group which can be analysed at the level of individual statements, clusters of statements, and groups of similar clusters. An example of concept mapping conducted with four general practitioner (GP) groups from different practice types and demographic locations is provided. A total of 51 participating GPs were asked to complete an 'evaluation questionnaire' at the end of each group session. The majority of GP participants (68%) rated the method as highly useful., Objective: To describe the concept mapping method and its interpretation for use in general practice research. To report on its perceived usefulness and acceptability by general practitioners., Discussion: Concept mapping is a very useful method combining benefits from qualitative and quantitative approaches for exploring the breadth of a topic in its entirety, especially for abstract concepts. GPs found the concept mapping method to be efficient for group inquiry, rating it high on utility. There is scope to refine the method, reducing time spent in some stages of the session, and substituting more time on final analysis.
- Published
- 1999
38. In vivo damage to DNA: sedimentation studies of giant DNA molecules from somatic tissues.
- Author
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Appleby DW and Appleby NH
- Subjects
- Animals, Bacteriophages analysis, Chromosomes analysis, DNA, Bacterial isolation & purification, DNA, Viral isolation & purification, Drosophila, Mice, Mitosis, Molecular Weight, Sister Chromatid Exchange, DNA isolation & purification
- Published
- 1981
- Full Text
- View/download PDF
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