157 results on '"Aplin, Ken P"'
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2. A new species of Halmaheramys (Rodentia: Muridae) from Bisa and Obi Islands (North Maluku Province, Indonesia)
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Fabre, Pierre-Henri, Reeve, Andrew Hart, Fitriana, Yuli S., Aplin, Ken P., and Helgen, Kristofer M.
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- 2018
3. Phylogenetic analysis of the tree-kangaroos (Dendrolagus) reveals multiple divergent lineages within New Guinea
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Eldridge, Mark D.B., Potter, Sally, Helgen, Kristofer M., Sinaga, Martua H., Aplin, Ken P., Flannery, Tim F., and Johnson, Rebecca N.
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- 2018
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4. Hiding in plain sight: two new species of diminutive marsupial (Dasyuridae: Planigale) from the Pilbara, Australia
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UMBRELLO, LINETTE S., primary, COOPER, NORAH K., additional, ADAMS, MARK, additional, TRAVOUILLON, KENNY J., additional, BAKER, ANDREW M., additional, WESTERMAN, MIKE, additional, and APLIN, KEN P., additional
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- 2023
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5. Isotopic evidence for initial coastal colonization and subsequent diversification in the human occupation of Wallacea
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Roberts, Patrick, Louys, Julien, Zech, Jana, Shipton, Ceri, Kealy, Shimona, Carro, Sofia Samper, Hawkins, Stuart, Boulanger, Clara, Marzo, Sara, Fiedler, Bianca, Boivin, Nicole, Mahirta, Aplin, Ken, and OʼConnor, Sue
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- 2020
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6. Ecologically-based management of pest rodents in rice-based agro-ecosystems in southeast Asia
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Jacob, Jens, Brown, Peter R., Aplin, Ken P., and Singleton, Grant R.
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pest rodent ,Rattus argentiventer ,southeast Asia ,trap barrier system ,rodent - Abstract
About 70% of the current energy intake of the human population in southeast Asia is met by rice. Rats, especially the ricefield rat, Rattus argentiventer, cause significant pre- and post-harvest losses in rice-based agro-ecosystems of southeast Asia and therefore require appropriate management. Current management practices focus on culling animals when populations are high and after significant damage has already occurred. The use of legal and illegal poisons poses a considerable threat to non-target species and humans. This is of particular concern in regions where rats are often consumed by humans to provide an important protein supplement to their diet. During the last seven years, CSIRO’s rodent research group has tested and refined several methods aimed at decreasing pre-harvest rodent damage in cooperation with the Indonesian Research Institute for Rice and the Vietnamese National Institute for Plant Protection. These methods include exclusion of rats by fencing and physical control by trap-barrier systems with lure crops. The effects of these technologies were investigated regarding the regulation of rat numbers (physical control), damage (exclusion, physical control) and yield (physical control). The results are promising, indicating yield increase, of up to 20% in some cases. Integration of these methods with improved field sanitation, crop synchronisation and more efficient timing of other physical methods of control should result in pronounced increases in yield and improved cost effectiveness. Our approach is contingent on a strong understanding of the ecology of specific rodent pests. Measures of success besides decrease in rat numbers and damage are an increase in farmers’ net income through yield increase and a decrease in the use of chemicals. Pros and cons of these methods in different economic and cultural environments are discussed.
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- 2002
7. 28. Ultrastructure of spermatozoa of australian blindsnakes, Ramphotyphlops spp. (Typhlopidae, Squamata) : first observationsonthe maturespermatozoonof scolecophidian snakes
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Harding, H Ronnie, Aplin, Ken P, Mazur, Maria, and BioStor
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- 1995
8. A new species of Rattus (Rodentia: Muridae) from Manus Island, Papua New Guinea
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Timm, Robert M., Weijola, Valter, Aplin, Ken P., Donnellan, Stephen C., Flannery, Tim F., Thomson, Vicki, and Pine, Ronald H.
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- 2016
9. Geoarchaeological finds below Liang Bua (Flores, Indonesia): A split-level cave system for Homo floresiensis?
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Gagan, Michael K., Ayliffe, Linda K., Smith, Garry K., Hellstrom, John C., Scott-Gagan, Heather, Drysdale, Russell N., Anderson, Neil, Suwargadi, Bambang W., Aplin, Ken P., Zhao, Jian-xin, Groves, Colin W., Hantoro, Wahyoe S., and Djubiantono, Tony
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- 2015
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10. Morphological and molecular evidence supports specific recognition of the recently extinct Bettongia anhydra (Marsupialia: Macropodidae)
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McDowell, Matthew C., Haouchar, Dalal, Aplin, Ken P., Bunce, Michael, Baynes, Alexander, and Prideaux, Gavin J.
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- 2015
11. Genetic insights into the introduction history of black rats into the eastern Indian Ocean
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Thomson, Vicki A A., Wiewel, Andrew S., Palmer, Russell, Hamilton, Neil, Algar, Dave, Pink, Caitlyn, Mills, Harriet, Aplin, Ken P., Clark, Geoffrey, Anderson, Atholl, Herrera, Michael B., Myers, Steven, Bertozzi, Terry, Piper, Philip J., Suzuki, Hitoshi, Donnellan, Steve, Thomson, Vicki A A., Wiewel, Andrew S., Palmer, Russell, Hamilton, Neil, Algar, Dave, Pink, Caitlyn, Mills, Harriet, Aplin, Ken P., Clark, Geoffrey, Anderson, Atholl, Herrera, Michael B., Myers, Steven, Bertozzi, Terry, Piper, Philip J., Suzuki, Hitoshi, and Donnellan, Steve
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Islands can be powerful demonstrations of how destructive invasive species can be on endemic faunas and insular ecologies. Oceanic islands in the eastern Indian Ocean have suffered dramatically from the impact of one of the world’s most destructive invasive species, the black rat, causing the loss of endemic terrestrial mammals and ongoing threats to ground-nesting birds. We use molecular genetic methods on both ancient and modern samples to establish the origins and minimum invasion frequencies of black rats on Christmas Island and the Cocos-Keeling Islands. We find that each island group had multiple incursions of black rats from diverse geographic and phylogenetic sources. Furthermore, contemporary black rat populations on these islands are highly admixed to the point of potentially obscuring their geographic sources. These hybridisation events between black rat taxa also pose potential dangers to human populations on the islands from novel disease risks. Threats of ongoing introductions from yet additional geographic sources is highlighted by genetic identifications of black rats found on ships, which provides insight into how recent ship-borne human smuggling activity to Christmas Island can negatively impact its endemic species.
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- 2022
12. Recent and Rapid Speciation with Limited Morphological Disparity in the Genus "Rattus"
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Rowe, Kevin C., Aplin, Ken P., Baverstock, Peter R., and Moritz, Craig
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- 2011
13. Genetic Insights Into the Introduction History of Black Rats Into the Eastern Indian Ocean
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Thomson, Vicki A., primary, Wiewel, Andrew S., additional, Palmer, Russell, additional, Hamilton, Neil, additional, Algar, Dave, additional, Pink, Caitlyn, additional, Mills, Harriet, additional, Aplin, Ken P., additional, Clark, Geoffrey, additional, Anderson, Atholl, additional, Herrera, Michael B., additional, Myers, Steven, additional, Bertozzi, Terry, additional, Piper, Philip J., additional, Suzuki, Hitoshi, additional, and Donnellan, Steve, additional
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- 2022
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14. The Osteology and Systematics of the Enigmatic Australian Oligo-Miocene Metatherian Yalkaparidon (Yalkaparidontidae; Yalkaparidontia; ?Australidelphia; Marsupialia)
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Beck, Robin M. D., Travouillon, Kenny J., Aplin, Ken P., Godthelp, Henk, and Archer, Michael
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- 2014
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15. Cryptic genetic diversity in Rattus of the San Francisco Bay region, California
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Conroy, Chris J., Rowe, Kevin C., Rowe, Karen M. C., Kamath, Pauline L., Aplin, Ken P., Hui, Lucia, James, David K., Moritz, Craig, and Patton, James L.
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- 2013
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16. High-resolution radiocarbon dating of marine materials in archaeological contexts: radiocarbon marine reservoir variability between Anadara, Gafrarium, Batissa, Polymesoda spp. and Echinoidea at Caution Bay, Southern Coastal Papua New Guinea
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Petchey, Fiona, Ulm, Sean, David, Bruno, McNiven, Ian J., Asmussen, Brit, Tomkins, Helene, Dolby, Nic, Aplin, Ken, Richards, Thomas, Rowe, Cassandra, Leavesley, Matthew, and Mandui, Herman
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- 2013
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17. Phylogeny and biogeography of the genus Mus in Eurasia
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Suzuki, Hitoshi, primary and Aplin, Ken P., additional
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- 2012
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18. The Non-Volant Mammal Fauna of the Muller Range, Papua New Guinea
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Aplin, Ken P., primary and Kale, Enock, primary
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- 2009
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19. Bats of the Muller Range, Papua New Guinea
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Armstrong, Kyle N., primary and Aplin, Ken P., primary
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- 2009
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20. DNA/DNA hybridization studies of the carnivorous marsupials. I: The intergeneric relationships of bandicoots (Marsupialia: Perameloidea)
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Kirsch, John A. W., Springer, Mark S., Krajewski, Carey, Archer, Michael, Aplin, Ken, and Dickerman, Allan W.
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- 1990
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21. DNA hybridization, cladistics, and the phylogeny of phalangerid marsupials
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Springer, Mark S., Kirsch, John A. W., Aplin, Ken, and Flannery, Tim
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- 1990
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22. Archaeological Research at Caution Bay, Papua New Guinea : Cultural, Linguistic and Environmental Setting
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Richards, Thomas, David, Bruno, Aplin, Ken, McNiven, Ian J., Richards, Thomas, David, Bruno, Aplin, Ken, and McNiven, Ian J.
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- 2016
23. Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily
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Chades Marion, Catzeflis François, Denys Christiane, Aplin Ken, Lecompte Emilie, and Chevret Pascale
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Evolution ,QH359-425 - Abstract
Abstract Background Within the subfamily Murinae, African murines represent 25% of species biodiversity, making this group ideal for detailed studies of the patterns and timing of diversification of the African endemic fauna and its relationships with Asia. Here we report the results of phylogenetic analyses of the endemic African murines through a broad sampling of murine diversity from all their distribution area, based on the mitochondrial cytochrome b gene and the two nuclear gene fragments (IRBP exon 1 and GHR). Results A combined analysis of one mitochondrial and two nuclear gene sequences consistently identified and robustly supported ten primary lineages within Murinae. We propose to formalize a new tribal arrangement within the Murinae that reflects this phylogeny. The diverse African murine assemblage includes members of five of the ten tribes and clearly derives from multiple faunal exchanges between Africa and Eurasia. Molecular dating analyses using a relaxed Bayesian molecular clock put the first colonization of Africa around 11 Mya, which is consistent with the fossil record. The main period of African murine diversification occurred later following disruption of the migration route between Africa and Asia about 7–9 Mya. A second period of interchange, dating to around 5–6.5 Mya, saw the arrival in Africa of Mus (leading to the speciose endemic Nannomys), and explains the appearance of several distinctive African lineages in the late Miocene and Pliocene fossil record of Eurasia. Conclusion Our molecular survey of Murinae, which includes the most complete sampling so far of African taxa, indicates that there were at least four separate radiations within the African region, as well as several phases of dispersal between Asia and Africa during the last 12 My. We also reconstruct the phylogenetic structure of the Murinae, and propose a new classification at tribal level for this traditionally problematic group.
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- 2008
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24. Corrigendum to: Rodent management issues in South Pacific islands: a review with case studies from Papua New Guinea and Vanuatu
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Brown, Peter R., primary, Aplin, Ken P., additional, Hinds, Lyn A., additional, Jacob, Jens, additional, Thomas, Sarah E., additional, and Ritchie, Barbara J., additional
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- 2018
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25. The Wayward Dog: Is the Australian native dog or Dingo a distinct species?
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Jackson, Stephen M., Groves, Colin, Fleming, Peter J. S., Aplin, Ken P., Eldridge, Mark D. B., Gonzalez, Antonio, Helgen, Kristopher M., Jackson, Stephen M., Groves, Colin, Fleming, Peter J. S., Aplin, Ken P., Eldridge, Mark D. B., Gonzalez, Antonio, and Helgen, Kristopher M.
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The taxonomic identity and status of the Australian Dingo has been unsettled and controversial since its initial description in 1792. Since that time it has been referred to by various names including Canis dingo, Canis lupus dingo, Canis familiaris and Canis familiaris dingo. Of these names C. l. dingo and C. f. dingo have been most often used, but it has recently been proposed that the Australian Dingo should be once again recognized as a full species-Canis dingo. There is an urgent need to address the instability of the names referring to the Dingo because of the consequences for management and policy. Therefore, the objective of this study was to assess the morphological, genetic, ecological and biological data to determine the taxonomic relationships of the Dingo with the aim of confirming the correct scientific name. The recent proposal for Canis dingo as the most appropriate name is not sustainable under zoological nomenclature protocols nor based on the genetic and morphological evidence. Instead we proffer the name C. familiaris for all free-ranging dogs, regardless of breed and location throughout the world, including the Australian Dingo. The suggested nomenclature also provides a framework for managing free-ranging dogs including Dingoes, under Australian legislation and policy. The broad principles of nomenclature we discuss here apply to all free-roaming dogs that coexist with their hybrids, including the New Guinea Singing Dog.
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- 2017
26. A new species of Halmaheramys (Rodentia: Muridae) from Bisa and Obi Islands (North Maluku Province, Indonesia)
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Fabre, Pierre-Henri, primary, Reeve, Andrew Hart, additional, Fitriana, Yuli S, additional, Aplin, Ken P, additional, and Helgen, Kristofer M, additional
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- 2017
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27. The Wayward Dog: Is the Australian native dog or Dingo a distinct species?
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JACKSON, STEPHEN M., primary, GROVES, COLIN P., additional, FLEMING, PETER J.S., additional, APLIN, KEN P., additional, ELDRIDGE, MARK D.B., additional, GONZALEZ, ANTONIO, additional, and HELGEN, KRISTOFER M., additional
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- 2017
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28. Rodent management issues in South Pacific islands: a review with case studies from Papua New Guinea and Vanuatu
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Brown, Peter R., primary, Aplin, Ken P., additional, Hinds, Lyn A., additional, Jacob, Jens, additional, Thomas, Sarah E., additional, and Ritchie, Barbara J., additional
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- 2017
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29. Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ' hotspot' of southwestern Western Australia
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Maryan, Brad, Brennan, Ian G., Adams, Mark, and Aplin, Ken P.
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Reptilia ,Squamata ,Animalia ,Biodiversity ,Chordata ,Taxonomy ,Pygopodidae - Abstract
Maryan, Brad, Brennan, Ian G., Adams, Mark, Aplin, Ken P. (2015): Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ' hotspot' of southwestern Western Australia. Zootaxa 3946 (3): 301-330, DOI: http://dx.doi.org/10.11646/zootaxa.3946.3.1
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- 2015
30. Delma Gray 1831
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Maryan, Brad, Brennan, Ian G., Adams, Mark, and Aplin, Ken P.
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Reptilia ,Squamata ,Animalia ,Biodiversity ,Chordata ,Delma ,Taxonomy ,Pygopodidae - Abstract
Delma Gray, 1831 Type species: Delma fraseri Gray, 1831, by monotypy. Diagnosis. Delma differs from all other pygopodid lizard genera in possessing the following combination of characters: head scales, including the parietals, enlarged and symmetrical; anterior nasal scales nearly always in contact; first pair of lower labials in contact behind mental scale; nostril usually bordered by more than two scales (except in some D. impar); external ear opening large; 20 or fewer midbody scale rows; dorsal and ventral scales smooth; precloacal pores absent; tail about three times as long as body (except in the D. australis species-group)., Published as part of Maryan, Brad, Brennan, Ian G., Adams, Mark & Aplin, Ken P., 2015, Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ' hotspot' of southwestern Western Australia, pp. 301-330 in Zootaxa 3946 (3) on page 316, DOI: 10.11646/zootaxa.3946.3.1, http://zenodo.org/record/244607, {"references":["Gray, J. E. (1831) Description of a new genus of ophisaurean animal, discovered by the late James Hunter, Esq., in New Holland. In: Gray, J. E. (Ed.), Zoological Miscellany, Treuttel, Wurtz & Co., London, pp. 14."]}
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- 2015
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31. Delma australis
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Maryan, Brad, Brennan, Ian G., Adams, Mark, and Aplin, Ken P.
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Reptilia ,Squamata ,Animalia ,Biodiversity ,Delma australis ,Chordata ,Delma ,Taxonomy ,Pygopodidae - Abstract
Delma australis species-group Diagnosis. Based on the molecular analysis of Jennings et al. (2003) and this study we formally propose a D. australis species-group, currently comprising D. australis, D. hebesa sp. nov. and D. torquata. The morphological characteristics of this species-group are relatively small-size (SVL to 93 mm); ventral scales usually not markedly larger than adjacent lateral scales (enlarged in some D. torquata); one pair of supranasal scales; modally 16 or 18 midbody scales (occasionally 17, 19 or 20); loreal scale row usually interrupted by a ventral extension of supraloreal scale that contacts upper labials. For comparisons of ventral body scale size between D. australis and D. fraseri see Kluge (1974: 9)., Published as part of Maryan, Brad, Brennan, Ian G., Adams, Mark & Aplin, Ken P., 2015, Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ' hotspot' of southwestern Western Australia, pp. 301-330 in Zootaxa 3946 (3) on page 316, DOI: 10.11646/zootaxa.3946.3.1, http://zenodo.org/record/244607, {"references":["Jennings, W. B., Pianka, E. R. & Donnellan, S. (2003) Systematics of the lizard family Pygopodidae with implications for the diversification of Australian temperate biotas. Systematic Biology, 52, 757 - 780. http: // dx. doi. org / 10.1080 / 10635150390250974","Kluge, A. G. (1974) A taxonomic revision of the lizard family Pygopodidae. Miscellaneous Publications of the Museum of Zoology, University of Michigan No. 152, 1 - 72."]}
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- 2015
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32. Delma hebesa Maryan, Brennan, Adams & Aplin, 2015, sp. nov
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Maryan, Brad, Brennan, Ian G., Adams, Mark, and Aplin, Ken P.
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Reptilia ,Delma hebesa ,Squamata ,Animalia ,Biodiversity ,Chordata ,Delma ,Taxonomy ,Pygopodidae - Abstract
Delma hebesa sp. nov. Heath Delma (Figs. 9, 10, 11) Holotype: WAM R 144237, male, Bandalup Hill, Ravensthorpe Range (33 �� 40 ' 29 "S 120 �� 23 ' 54 "E), Western Australia, Australia, collected by R. Teale & G. Harold, 14 October 2000. Fixed in 10 % formalin, stored in 70 % ethanol, liver sample stored in ��� 80 ��C ultrafreezer at WAM. Paratypes: All from Western Australia. WAM R 129674, male, 3.8 km W of Kundip, (33 �� 41 'S 120 ��09'E); WAM R 131902, female, Hellfire Bay, Cape Le Grand National Park, (34 ��00' 15 "S 122 �� 10 ' 20 "E); WAM R 132154, female, Duke of Orleans Bay, Wharton Beach, (33 �� 56 'S 122 �� 33 'E); WAM R 144238, male, same details as holotype; WAM R 154234, male, Kundip, (33 �� 40 ' 26 "S 120 �� 11 ' 45 "E); WAM R 156978, male, Canal Rocks, (33 �� 39 ' 46 "S 115 ��00' 45 "E). Other material examined: A full list of material examined is provided at the end of the paper. Diagnosis. A small species of Delma (SVL to 79 mm) with: ventral scales not markedly larger than adjacent lateral scales; one pair of supranasals; modally 18 midbody scales; modally 10 hindlimb scales in both sexes; 73���92 ventral scales (males average 76.8, females 85.5); six upper labials with fourth typically below eye; loreal scale row typically interrupted by a ventral extension of supraloreal scale that contacts upper labials; essentially unpatterned head, sometimes with weak dark variegations on sides of head and indistinct narrow bars or smudges on labial scales, nape and forebody. Diagnostic differences between D. hebesa sp. nov. and D. australis are listed under the foregoing species account. Delma hebesa sp. nov. differs from D. torquata from southeastern Queensland in having a larger adult size (SVL to 79 mm versus to 63 mm), three precloacal scales (versus two), the fourth upper labial typically below the eye (versus typically the third below the eye), modally 18 midbody scale rows (versus 16) and only dark variegations (if present) on head and neck (versus broad dark bands). Delma hebesa sp. nov. differs from all other Australian species (except D. australis, D. torquata and D. concinna) in having ventral scales not markedly larger than adjacent lateral scales (versus markedly larger). Delma hebesa sp. nov. differs from D. fraseri with which it occurs in sympatry (see below) in having a smaller adult size (SVL to 79 mm versus to 140 mm, Bush et al. 2007), one pair of supranasals (versus two pairs), modally 18 midbody scale rows (versus 16), ventral scales not markedly larger than adjacent lateral scales (versus markedly larger) and only dark variegations (if present) on head and neck (versus broad dark bands, often faded in adults). Description of holotype (Fig. 9). Measurements (in mm) and meristic values: SVL 57, HD 3.4, HL 6.9, HW 4.5, HLL 3.3, ML 4.9, RL 0.9, RW 1.3, SL 2.6, EW 1.1, HLS 10, MSR 18, VE 75. Head short and narrowing gradually forward of eyes, of equal width to body posteriorly; obvious tympanic aperture, indicated by round opening posterior to corner of mouth, opening is more narrow on right side; snout moderately long and rounded in dorsal and lateral profiles; body moderately robust of equal width and round in cross-section; hindlimbs visible as well-developed elongate, rounded flaps adpressed to body at lateral extremes of vent; tail relatively short, tapering very gradually distally to a pointed tip. Head scales smooth, non-imbricate and heterogeneous; rostral rounded anteriorly, wider than long, with obtuse apex projecting between supranasals; one pair of supranasals in broad contact, angled backwards posteromedially behind rostral and in short contact with first upper labial; nostril positioned on posterior junction of supranasal with first upper labial and postnasal; one postnasal, wider than high, angled posteroventrally and in short contact with second upper labial; prefrontals symmetrical and in broad contact; supraloreal much higher than wide, and in broad contact with second upper labial; four loreals, the anterior most slightly larger; five supraciliaries, first and fourth the smallest, second and fifth the largest; two supraoculars, first slightly larger than second; two frontals, the anterior most slightly wider and larger; two parietals, one on left side is slightly larger and longer; occipital present; two upper temporals; six upper labials, fourth the widest and positioned below eye, third the smallest, on left side a small scale intersects suture between second and third upper labial; five lower labials, second the largest and widest, fifth the smallest; mental wider than long with suture starting half-way along first upper labial. General form of head and details of scalation illustrated in Fig. 9 A, B. Body scales smooth, non-imbricate, homogeneous, and arranged in parallel longitudinal rows; ventral scales only very marginally wider than the adjacent lateral body scales; three precloacal scales. In preservative, due to the leaching of colours in ethanol after 14 years, the holotype (Fig. 9) has lost the grey colouration on the dorsal surface which is now light brown. All other aspects of dark bars or smudges on lower labials and obscure variegations on body remained. Colouration in life. The following description of colouration in life is based on Figs. 10 A, B, 11 A and field observations of D. hebesa sp. nov. from the Esperance Plains. Top of head bluish to light grey and unpatterned or with weak dark variegations. Lower labials whitish with blackish bars or smudges, centred on sutures of mental and anterior two lower labial scales, corner of mouth, grading to obscure variegations or weak bars around ear opening and on lateral scales of forebody. There is only very weak ventral extension of black bars or smudges on to chin and throat. Dorsal body surface bluish to light grey anteriorly, gradually merging to light brown body than to light grey tail. Lower flanks are slightly pinkish to reddish brown. Dorsal surface is uniform, except for some indication of obscure dark spots or variegations, particularly on some sutures of body scales. Ventral surface under head and along body whitish, with blackish variegations, becoming less pigmented under tail. The longest tail measured was 140 mm (208 % of SVL) on WAM R 131902. For comparisons of both D. hebesa sp. nov. and D. australis in life see Thompson & Thompson (2006: 44, ���grey morph��� and ���brown morph���), Bush et al. (2007: 135) and Henkel (2010: 141). Variation. Table 5 presents the means, standard deviations and ranges of the characters counted and measured for each sex of D. hebesa sp. nov. Table 8 presents the individual measurements and meristic counts for the type series of D. hebesa sp. nov. As noted in D. australis, the variation in the contact of the supraloreal with the upper labials and interrupting the loreal scale row or not, is similarly recorded in D. hebesa sp. nov. as the following conditions: the supraloreal contacts second upper labial on both sides (as in holotype) in WAM R 129674 and WAM R 154234; it contacts second and third upper labial on both sides in WAM R 131902 and WAM R 144238, and is separated from upper labials by either one large loreal and an elongate postnasal or two smaller loreals in WAM R 156978. One specimen (WAM R 154234) has five upper labials unilaterally, with the third under eye. All the type material has 18 midbody scales and 2���4 loreals. Variation in colouration and pattern. Most s pecimens are similarly coloured to the holotype in life and in preservative. Occasional preserved individuals (e.g. WAM R 131902) have more pronounced dark bars on the lower labials and lateral scales of forebody, while others (e.g. WAM R 154234) are a very uniform dark grey on head, body and tail. In life, hatchlings of D. hebesa sp. nov. have a similar colour and head pattern to adults (B. Bush, pers. comm.). Etymology. The specific name hebesa is derived from the Latin adjective hebes, meaning dull, alluding to the matt body texture, without much shine, of this species. Distribution and sympatry. Delma hebesa sp. nov. is widespread on the Esperance Plains bioregion and patchily distributed on the Warren and southern Jarrah Forest bioregions (Thackway & Cresswell 1995) in southwestern Western Australia (Fig. 8). Records extend east to the vicinity of Thomas River and Cape Arid, west to Canal Rocks and near Busselton, and inland to Stirling Range National Park, Ongerup, Ravensthorpe Range, Scaddan and Mount Burdett. The geographic distributions of D. hebesa sp. nov. and D. australis appear to be parapatric (Fig. 8). Currently the two species are known to occur within 80 km of each other in the east: WAM R 91740 of D. hebesa sp. nov. from Cape Arid versus WAM R 36229 of D. australis from Pine Hill and within 130 km in the west: WAM R 42637 of D. hebesa sp. nov. from Ongerup versus WAM R 12604 of D. australis from Wagin. Specimens from these parapatric localities do not show any indication of morphological intermediacy. The only recorded instance of sympatry involving D. hebesa sp. nov. is with D. fraseri (Bush 1981, 1984, as D. australis). Habitat. Delma hebesa sp. nov. occupies the proteaceous scrub and mallee heath on south coast sandplains (Beard 1990; Comer et al. 2001; Fig. 12). This habitat preference is exemplified of 65 records of D. hebesa sp. nov. from 18 sites, in which 79 % were recorded from mallee heath (Sanders et al. 2012, as D. australis). These diverse vegetation communities provide ample cover for D. hebesa sp. nov., where most specimens, including the type series, have been pit-trapped and raked from leaf litter, spoil-heaps, and mats of dead vegetation and inside abandoned stick-ant (Iridomyrmex conifer Forel) nests. It has also been found under logs, mallee roots, rocks and rubbish, especially pieces of corrugated iron in disturbed areas adjacent to uncleared heath (Bush 1981). It also occupies the granitic heath where it is occasionally found under exfoliated granite slabs (B. Maryan, pers. obs.). There are no habitat data associated with specimens from the lower southwestern corner of Western Australia (WAM R 129003, WAM R 156978, WAM R 172507). Remarks. Bush (1981: 21), Wilson & Knowles (1988: 246) and Bush et al. (2007: 135 a) illustrated D. hebesa sp. nov. as D. australis. Additionally, Wilson & Knowles (1988: 96) and Wilson & Swan (2013: 144) refer to D. australis individuals from the far southwest of range as bluish grey, a colouration feature consistent with D. hebesa sp. nov. Historically, D. australis has been documented as not occurring in the humid deep southwest of Western Australia (Kluge 1974; Wilson & Knowles 1988; Storr et al. 1990). However, there are a few records of D. hebesa sp. nov. in this area where they appear to be scarce when compared to the Esperance Plains. This apparent scarcity is documented by How et al. (1987), who recorded ��� D. australis ��� from only Two Peoples Bay in a survey of herpetofauna between Busselton and Albany. Biological surveys conducted on the Esperance Plains to date indicate D. hebesa sp. nov. to be widespread and locally abundant in areas of suitable habitat (Chapman & Dell 1975; Bush 1985; Chapman & Newbey 1995; Sanders et al. 2012, as D. australis). Bush (1983, 1984, as D. australis) provides additional information on reproduction in captivity and field observations of winter aggregations of D. hebesa sp. nov. from the Esperance Plains. The Esperance Plains bioregion is a biogeographically significant area rich in endemic plants, rare ecosystems, and vulnerable and specially protected fauna (Comer et al. 2001). Approximately 87 % of the Esperance Plains bioregion has been cleared and developed for intensive agriculture. However, much of the remaining vegetation is afforded statutory protection, including many nature reserves and national parks (Cape Arid, Cape Le Grand, Stokes, Fitzgerald River and Stirling Range National Parks) where D. hebesa sp. nov. is known to occur., Published as part of Maryan, Brad, Brennan, Ian G., Adams, Mark & Aplin, Ken P., 2015, Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ' hotspot' of southwestern Western Australia, pp. 301-330 in Zootaxa 3946 (3) on pages 321-325, DOI: 10.11646/zootaxa.3946.3.1, http://zenodo.org/record/244607, {"references":["Bush, B., Maryan, B., Browne-Cooper & Robinson, D. (2007) Reptiles and Frogs in the bush: Southwestern Australia. University of Western Australia Press, Perth, 302 pp.","Thompson, S. A. & Thompson, G. G. (2006) Reptiles of the Western Australian Goldfields. Goldfields Environmental Management Group, Kalgoorlie-Boulder, 140 pp.","Henkel, F. W. (2010) Terralog Vol. 10: Geckos of Australia. Edition Chimaira, Frankfurt am Main, Germany, 160 pp.","Thackway, R. & Cresswell, I. D. (1995) An Interim Biogeographic Regionalisation for Australia: A Framework for Setting Priorities in the National Reserves System Cooperative Program Version 4.0. Australian Nature Conservation Agency, Reserves Systems Unit, Canberra.","Bush, B. (1981) Reptiles of the Kalgoorlie-Esperance Region. B. Bush, Perth, 46 pp.","Bush, B. (1984) Seasonal aggregation behaviour in a mixed population of legless lizards, Delma australis and D. fraseri. Herpetofauna, 16, 1 - 6.","Beard, J. S. (1990) Plant Life of Western Australia. Kangaroo Press, Sydney, 317 pp.","Comer, S., Gilfillan, S., Barrett, S., Grant, M., Tiedemann, K. & Anderson, L. (2001) Esperance 2 (ESP 2 - Recherche subregion). A Biodiversity Audit of Western Australia's 53 Biogeographical Subregions in 2002. Department of Conservation and Land Management, Perth. [unkown pagination]","Sanders, A., Chapman, A., Teale, R. J. & Harold, G. (2012) Vertebrate fauna of the Fitzgerald Biosphere Reserve, Western Australia. The Western Australian Naturalist, 28, 141 - 253.","Wilson, S. K. & Knowles, D. G. (1988) Australia's Reptiles. A Photographic Reference to the Terrestrial Reptiles of Australia. Collins, Sydney, 447 pp.","Wilson, S. & Swan, G. (2013) A Complete Guide to Reptiles of Australia. Fourth Edition. New Holland Publishers, Sydney, 592 pp.","Kluge, A. G. (1974) A taxonomic revision of the lizard family Pygopodidae. Miscellaneous Publications of the Museum of Zoology, University of Michigan No. 152, 1 - 72.","Storr, G. M., Smith, L. A. & Johnstone, R. E. (1990) Lizards of Western Australia. III. Geckos & Pygopods. Western Australian Museum, Perth, 141 pp.","How, R. A., Dell, J. & Humphreys, W. F. (1987) The ground vertebrate fauna of coastal areas between Busselton and Albany, Western Australia. Records of the Western Australian Museum, 13, 553 - 574.","Chapman, A. & Dell, J. (1975) Reptiles, Amphibians and Fishes. In: A biological survey of Cape Le Grand National Park. Records of the Western Australian Museum, 1 (Supplement), pp. 34 - 38.","Bush, B. (1985) Some reptiles and frogs recorded in Stokes National Park. The Western Australian Naturalist, 16, 52.","Chapman, A. & Newbey, K. R. (1995) A biological survey of the Fitzgerald area, Western Australia. CALM Science, 3 (Supplement), 1 - 258.","Bush, B. (1983) A record of reproduction in captive Delma australis and D. fraseri (Lacertilia: Pygopodidae). Herpetofauna, 15, 11 - 12."]}
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33. Delma australis Kluge 1974
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Maryan, Brad, Brennan, Ian G., Adams, Mark, and Aplin, Ken P.
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Reptilia ,Squamata ,Animalia ,Biodiversity ,Delma australis ,Chordata ,Delma ,Taxonomy ,Pygopodidae - Abstract
Delma australis Kluge, 1974 Marble-faced Delma (Figs. 6, 7, 11) Holotype: WAM R 27359, male, Port Lincoln (34 �� 44 'S 135 �� 52 'E), South Australia, Australia, collected by G.M. Storr, 19 October 1966. Paratype: WAM R 24528, female, 37 km ENE of Wirrula (32 �� 22 'S 134 �� 54 'E), South Australia, Australia. Other material examined: A full list of material examined is provided at the end of the paper. Revised diagnosis. A small species of Delma (SVL to 93 mm) with: ventral scales not markedly larger than adjacent lateral scales; one pair of supranasals; typically 18 midbody scales; 68���92 ventral scales (males average 76.3, females 83.5); six upper labials typically with fourth below eye; loreal scale row typically interrupted by a ventral extension of supraloreal scale that contacts upper labials; modally 5���7 hindlimb scales in both sexes; strong dark variegations on upper surface of head; narrow dark bars on side of head (extending onto labial scales), nape and forebody. This revised diagnosis is essentially unchanged from those provided by previous authors (Kluge 1974; Storr et al. 1990; Shea 1991), despite the exclusion herein of D. hebesa sp. nov. Delma australis differs from the closely related D. torquata of southeastern Queensland in: larger adult size (SVL to 93 mm versus to 63 mm); three precloacal scales (versus two); the fourth upper labial scale typically below the eye (versus typically the third below the eye); modally 18 midbody scale rows (versus 16); and dark variegations or narrow bars (if present) on head, neck and forebody (versus broad dark bands). It differs from D. hebesa sp. nov. in: hindlimb scale counts in both sexes modally 5���7 (versus > 9); body colour brownish on head and tail (versus greyish on head and tail); head, nape and lateral scales of forebody with strong dark variegations or narrow barring (versus weak variegations); dark barring on head typically extends ventrally onto the chin and throat (versus indistinct dark bars or smudges present on the lower labials); and dark pigment on rostral and lower labials not aligned with sutures (versus dark smudges positioned over sutures between rostral and lower labials). Description of holotype (Fig. 6). Measurements (in mm) and meristic values, as determined during this study: SVL 65, HD 3.5, HL 7.5, HW 5.0, HLL 3.2, ML 4.7, RL 1.0, RW 1.7, SL 2.8, EW 1.3, HLS 10, MSR 19, VE 71. Head short and blunt, narrowing very gradually forward of eyes, of equal width to body posteriorly; obvious tympanic aperture, indicated by round opening directly posterior to corner of mouth; snout blunt and rounded in dorsal profile, rounded in lateral profile; body moderately robust of equal width and round in cross-section; hindlimbs visible as well-developed elongate, rounded flaps adpressed to body at lateral extremes of vent; tail relatively short, tapering very gradually distally to a pointed tip. Head scales smooth, non-imbricate and heterogeneous; large rostral blunt anteriorly, wider than long, with obtuse apex projecting between supranasals; one pair of supranasals in broad contact, angled backwards posteromedially behind rostral and in short contact with first upper labial anterior to nostril; nostril positioned on posterior junction of supranasal with first upper labial and postnasal; one postnasal, much wider than high and narrower posteriorly, slightly angled posteroventrally and in broad contact with second upper labial; prefrontals symmetrical, in broad contact; one supraloreal, much higher than wide and in broad contact with second upper labial; four loreals, the anterior most much larger; five supraciliaries, first and fourth the smallest, second the largest; two supraoculars, first slightly larger and wider than second; two frontals, the posterior most slightly wider and larger; two parietals, one on left side fused (partial suture evident) with upper temporal; occipital present; two upper temporals; six upper labials, fourth the widest and positioned below eye, third the smallest and fifth the highest; five lower labials, second the largest and widest, fifth the smallest; mental wider than long with suture starting half-way along the first upper labial. General form of head and details of scalation illustrated in Fig. 6 A, B. Body scales smooth, non-imbricate, homogeneous, and arranged in parallel longitudinal rows; ventral scales only very marginally wider than the adjacent lateral body scales; three precloacal scales. After more than 40 years in preservative (Fig. 6), the holotype is light brown on the dorsal surface with a slightly darker head bearing dense black variegations. Lower labials whitish with distinct black bars positioned centrally on first to third lower labial scales. Black bars continue on to corner of mouth, around ear opening and on the lateral scales of forebody. A faint dark bar is also present within mental scale. Dark bars extend ventrally onto chin and throat. Ventral surface under head and along body is whitish. Variation in measurements and scalation. Table 5 presents the means, standard deviations and ranges of the characters counted and measured for each of the three geographic populations of D. australis, as defined in Material and Methods. Data are presented separately for each sex. Most head scales in D. australis display minimal intraspecific variation. However, the condition of the supraloreal (described as a prefrontal by Shea 1991) extending ventrally to contact the upper labials, thereby interrupting the row of small loreals, is variable in this species. The most common condition is contact with the upper labials, as noted by Storr et al. (1990: 115), Shea (1991: 115) and shown in Figure 6 B. Our examination of 97 specimens of D. australis from Western and South Australia recorded the supraloreal (sometimes the postnasal and prefrontal) contacting the upper labials in over 70 % of specimens. The opposing condition of no contact between the supraloreal and upper labial scales was mostly caused by the presence of either one large loreal (sometimes with elongate postnasal), or two smaller loreals extending continuously from the postnasal to the subocular upper labial. We observed 0���5 loreals in this species, with one loreal being the typical condition, as reported by Storr et al. (1990). Most specimens had six upper labials with the 4 th below the eye but we saw occasional individuals with five (3 rd below the eye) or seven (5 th below the eye), mostly unilaterally. Over 70 % of specimens examined had the typical 18 midbody scales. Most others had 20 midbody scales, with occasional counts of 17 and 19, corresponding to the range given by Storr et al. (1990). One specimen (SAMA R 36487) has extensively fused head scales, with the supraloreal and prefrontal fused on the left side only and only four upper labials on the right side. The longest tail measured was 162 mm (245 % of SVL) on WAM R 112667. Kluge (1974: 78) and Storr et al. (1990: 115) illustrate the general form of the head and details of scalation of D. australis. Variation in colouration and pattern. Shea (1991: 72���73) documented geographic variation in the intensity of the head pattern in this species in South Australia. He distinguished and mapped a ���patterned��� form from the southern half and northwest of the state (Fig. 7 A; Cogger 2014: 388) and an ���unpatterned��� form from the western Lake Eyre drainage (Fig. 7 B). The holotype and 15 paratypes of D. australis from the Eyre Peninsula (south of the Gawler Ranges) in South Australia (Kluge 1974) are considered representative of the ���patterned��� form (Shea 1991: Fig. 1) in having strong dark variegations on the head, although the pattern is reduced, particularly laterally, in a few specimens. The ���patterned��� form is contiguous and similar to populations in northwestern Victoria and southwestern New South Wales (Swan et al. 2004: 49; Swan & Watharow 2005: 26; Wilson & Swan 2013: 145). Kluge (1974: 78) illustrates a preserved adult male specimen (SAMA R 10375) of the ���patterned��� form from near Kokatha in South Australia. In addition, strongly patterned individuals of D. australis have been illustrated by Ehmann (1992: 87) and Henkel (2010: 141). Western Australian populations of D. australis also display geographic patterning in colouration. Strongly patterned individuals with dark variegations and narrow bars on the lateral scales of forebody occur throughout the eastern Coolgardie Goldfields (Fig. 7 C) and Mallee bioregions (Fig. 7 D) (Thackway & Cresswell 1995). Particularly strongly patterned individuals are found on the Houtman Abrolhos (Fig. 7 E), while the population found to the immediate north around Shark Bay has very reduced patterning, with some individuals almost having dark brown uniform heads (Fig. 7 F), similar in many respects to the unpatterned form from South Australia. By contrast, a unique representative of the group (WAM R 132470) from the North West Cape has a rich brick-red body with an intensely black head flecked with small pale spots (Fig. 7 G). Distribution and sympatry. Delma australis is widespread throughout the subhumid to arid areas of southern Australia, from northwestern Victoria, and southwestern New South Wales, through most of South Australia and adjacent southern Northern Territory to southern and central west Western Australia (Wilson & Knowles 1988; Shea 1991; Swan et al. 2004; Wilson & Swan 2013; Fig. 8). In Western Australia, it extends north to Shark Bay (base of Peron Peninsula), Meedo Station, Weld Range, Paynes Find, Windarling Hill and Buningonia Spring, south through the Avon Wheatbelt, Mallee and Coolgardie Goldfields bioregions, and east to Cocklebiddy. There is a disjunct population on the North West Cape, represented by a single specimen from Shothole Canyon in the Cape Range (Fig. 8). Other possible outlier populations in the mid-west of Western Australia are Walyering Hill, Oakajee and near Kalbarri. Insular populations occur on Rat and Middle Islands in the Houtman Abrolhos. Recorded instances of sympatry involving D. australis include D. butleri, D. fraseri, D. grayii Smith, D. nasuta Kluge and D. petersoni Shea (Dell & Chapman 1981; Dell & How 1984; Chapman & Dell 1985; Shea 1991; Mckenzie et al. 1993; B. Maryan & G. Shea, per. obs.). For instance, in the vicinity of Poochera in South Australia, D. australis, D. butleri and D. petersoni have all been recorded (Shea 1991: 82). Four other species of Delma are recorded on the North West Cape. Delma nasuta and D. tincta are known from several localities (Maryan et al. 2007), while D. tealei Maryan, Aplin & Adams has been collected at Shothole Canyon and other localities on the Cape Range. Delma butleri is known from a single specimen collected at the Learmonth Air Weapons Range, immediately south of the Cape Range National Park. Habitat. In northwestern Victoria and southwestern New South Wales D. australis mainly occupies mallee habitats with a spinifex (Triodia) understorey (Swan et al. 2004; Swan & Watharow 2005). This habitat association is repeated in South Australia where the majority of the southern and western populations are from Triodia or mallee habitats, or combination of both (Shea 1991). The western Lake Eyre Basin population lives on gibber plain with Atriplex, on watercourses lined with Eucalyptus, and on low, stony hills with drainage channels and Acacia (Shea 1991; B. Maryan, pers. obs.). In Western Australia, D. australis occupies a variety of habitats growing on different soils, including mallee and/or other Eucalyptus woodlands and Acacia with a spinifex (Triodia and Plectrachne) or shrubland understorey (Storr et al. 1990; Smith et al. 1997; Bush et al. 2007). The habitat at Cape Range on the North West Cape consists of a heavily dissected limestone plateau sparsely vegetated with Triodia, shrubs and low eucalypts; gorges within the range are more heavily vegetated (Storr & Hanlon 1980). These diverse vegetation communities provide ample cover for D. australis, where most specimens have been pit-trapped, found in and under spinifex and sedge tussocks, raked from leaf litter, spoil-heaps, mats of dead vegetation and found under logs, mallee roots, rocks (including coral slabs on the Houtman Abrolhos) and rubbish, especially pieces of corrugated iron in disturbed areas adjacent to uncleared vegetation. When found in sympatry with other Delma species, D. australis tends to occur in moister microhabitats (Shea 1991; Wilson & Swan 2013). Interestingly, nocturnal observations of D. australis on sealed roads or tracks are rare, unlike other, larger-bodied species of Delma. Remarks. Using morphology alone, Kluge (1974) recognized and assessed differences between three geographic samples of male D. australis: a southwestern Western Australia sample (south of 32 �� 30 ���S, west of 120 ��E), an Eyre Peninsula of South Australia sample (south of 32 ��S), and a Victorian sample. He found significant mean differences in number of preorbital, preanal, hindlimb and caudal scales; as well as throat pattern and visceral pigmentation. A multivariate analysis of these six characters also revealed significant differentiation among the three regions. However, Kluge���s character definitions were different to those used in this study, and were based on a very small sample size (n= 3 per locality = 7, 8 and 12 respectively, with the Western Australian sample potentially including both D. australis and D. hebesa sp. nov.). Further studies in the laboratory and field are needed to determine whether or not the geographic sub-populations identified in each of South Australia and Western Australia correspond with the ���northern��� and ���southern��� groups distinguished by allozyme differences in the present study. Large gaps remain in the geographic sampling of all regional populations and the collection of additional specimens at or near potential contact zones would be particularly valuable to establish the status of the various forms., Published as part of Maryan, Brad, Brennan, Ian G., Adams, Mark & Aplin, Ken P., 2015, Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ' hotspot' of southwestern Western Australia, pp. 301-330 in Zootaxa 3946 (3) on pages 316-321, DOI: 10.11646/zootaxa.3946.3.1, http://zenodo.org/record/244607, {"references":["Kluge, A. G. (1974) A taxonomic revision of the lizard family Pygopodidae. Miscellaneous Publications of the Museum of Zoology, University of Michigan No. 152, 1 - 72.","Storr, G. M., Smith, L. A. & Johnstone, R. E. (1990) Lizards of Western Australia. III. Geckos & Pygopods. Western Australian Museum, Perth, 141 pp.","Shea, G. M. (1991) Revisionary notes on the genus Delma (Squamata: Pygopodidae) in South Australia and the Northern Territory. Records of the South Australian Museum, 25, 71 - 90.","Cogger, H. G. (2014) Reptiles & Amphibians of Australia. Seventh Edition. CSIRO Publishing, Melbourne, 1033 pp. http: // dx. doi. org / 10.1086 / 678659","Swan, G., Shea, G. & Sadlier, R. (2004) A Field Guide to Reptiles of New South Wales. Second Edition. New Holland Publishers, Sydney, 302 pp.","Swan, M. & Watharow, S. (2005) Snakes, Lizards and Frogs of the Victorian Mallee. CSIRO Publishing, Melbourne, 91 pp.","Wilson, S. & Swan, G. (2013) A Complete Guide to Reptiles of Australia. Fourth Edition. New Holland Publishers, Sydney, 592 pp.","Ehmann, H. (1992) Encyclopedia of Australian Animals. Reptiles. Angus & Robertson, Sydney, 495 pp.","Henkel, F. W. (2010) Terralog Vol. 10: Geckos of Australia. Edition Chimaira, Frankfurt am Main, Germany, 160 pp.","Thackway, R. & Cresswell, I. D. (1995) An Interim Biogeographic Regionalisation for Australia: A Framework for Setting Priorities in the National Reserves System Cooperative Program Version 4.0. Australian Nature Conservation Agency, Reserves Systems Unit, Canberra.","Wilson, S. K. & Knowles, D. G. (1988) Australia's Reptiles. A Photographic Reference to the Terrestrial Reptiles of Australia. Collins, Sydney, 447 pp.","Dell, J. & Chapman, A. (1981) Reptiles and frogs of East Yuna and Bindoo Hill Nature Reserves. In: Biological survey of the Western Australian Wheatbelt. Part 14. Records of the Western Australian Museum, 13 (Supplement), pp. 95 - 102.","Dell, J. & How, R. A. (1984) Vertebrate Fauna. In: The Biological Survey of the Eastern Goldfields of Western Australia. Part 2: Widgiemooltha - Zanthus Study area. Records of the Western Australian Museum, 18 (Supplement), pp. 57 - 89.","Chapman, A. & Dell, J. (1985) Biology and zoogeography of the amphibians and reptiles of the Western Australian Wheatbelt. Records of the Western Australian Museum, 12, 1 - 46.","Smith, G. T., Leone, J. & Dickman, C. R. (1997) Small terrestrial vertebrate communities in remnant vegetation in the central wheatbelt of Western Australia. The Western Australian Naturalist, 21, 235 - 249.","Bush, B., Maryan, B., Browne-Cooper & Robinson, D. (2007) Reptiles and Frogs in the bush: Southwestern Australia. University of Western Australia Press, Perth, 302 pp.","Storr, G. M. & Hanlon, T. M. S. (1980) Herpetofauna of the Exmouth region, Western Australia. Records of the Western Australian Museum, 8, 423 - 439."]}
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34. Bandicoot fossils and DNA elucidate lineage antiquity amongst xeric-adapted Australasian marsupials
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Kear, Benjamin P., Aplin, Ken P., Westerman, Michael, Kear, Benjamin P., Aplin, Ken P., and Westerman, Michael
- Abstract
Bandicoots (Peramelemorphia) are a unique order of Australasian marsupials whose sparse fossil record has been used as prima facie evidence for climate change coincident faunal turnover. In particular, the hypothesized replacement of ancient rainforest-dwelling extinct lineages by antecedents of xeric-tolerant extant taxa during the late Miocene (-10 Ma) has been advocated as a broader pattern evident amongst other marsupial clades. Problematically, however, this is in persistent conflict with DNA phylogenies. We therefore determine the pattern and timing of bandicoot evolution using the first combined morphological + DNA sequence dataset of Peramelemorphia. In addition, we document a remarkably archaic new fossil peramelemorphian taxon that inhabited a latest Quaternary mosaic savannah-riparian forest ecosystem on the Aru Islands of Eastern Indonesia. Our phylogenetic analyses reveal that unsuspected dental homoplasy and the detrimental effects of missing data collectively obscure stem bandicoot relationships. Nevertheless, recalibrated molecular clocks and multiple ancestral area optimizations unanimously infer an early diversification of modern xeric-adapted forms. These probably originated during the late Palaeogene (30-40 Ma) alongside progenitors of other desert marsupials, and thus occupied seasonally dry heterogenous habitats long before the onset of late Neogene aridity.
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35. Bandicoot fossils and DNA elucidate lineage antiquity amongst xeric-adapted Australasian marsupials
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Kear, Benjamin P., primary, Aplin, Ken P., additional, and Westerman, Michael, additional
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36. A new species ofRattus(Rodentia: Muridae) from Manus Island, Papua New Guinea
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Timm, Robert M., primary, Weijola, Valter, additional, Aplin, Ken P., additional, Donnellan, Stephen C., additional, Flannery, Tim F., additional, Thomson, Vicki, additional, and Pine, Ronald H., additional
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37. Geoarchaeological finds below Liang Bua (Flores, Indonesia): A split-level cave system for Homo floresiensis?
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Gagan, Michael, Ayliffe, Linda, Smith, Garry, Hellstrom, John Charles, Scott-Gagan, Heather, Drysdale, Russell N, Anderson, Neil, Suwargadi, Bambang W, Aplin, Ken P., Zhao, Jian-xin, Groves, Colin, Hantoro, Wahyoe, Djubiantono, Tony, Gagan, Michael, Ayliffe, Linda, Smith, Garry, Hellstrom, John Charles, Scott-Gagan, Heather, Drysdale, Russell N, Anderson, Neil, Suwargadi, Bambang W, Aplin, Ken P., Zhao, Jian-xin, Groves, Colin, Hantoro, Wahyoe, and Djubiantono, Tony
- Abstract
We report on new geoarchaeological finds in a recently discovered cave-chamber (Liang Bawah, "Cave Underneath") positioned below Liang Bua on the island of Flores, Indonesia, where the type specimen for Homo floresiensis was recovered from Late Pleistocene sediment. At the rear of Liang Bua, a 23-m-long shaft, inclined at 60°, leads to a lower chamber measuring 23m ×24m. ×5m high (about half the size of Liang Bua). Stone artefacts and bones were found shallowly buried in rubble at the base of the shaft, and around a 5-m-high mud mound that fills the northwest sector of Liang Bawah. We recovered 17 stone artefacts made from chert and volcanics, and more than 220 well-preserved bone elements belonging to endemic giant rats, pigs, primates, small murid rodents, bats and introduced species. Multi-collector inductively coupled plasma mass spectrometer (MC-ICPMS) analysis of uranium and thorium in carbonate coatings on four bones yielded ages of ~240-180ka (endemic giant rat femur), ~110-60ka (unidentified phalanx), ~33-23ka (pig skull fragment), and ~7-3ka (giant rat femur), which overlap with the ~95 to 17ka occupation of Liang Bua by H. floresiensis. The ~33-23ka age of the pig skull fragment indicates that Sus sp. may have dispersed into island Southeast Asia earlier than previously recognised. The passageway at the rear of Liang Bawah, and a currently buried front entrance, represent two possible transport paths for cultural and faunal material to the cave-chamber. Analysis of the geomorphic evolution of Liang Bawah shows that it may have been a Late Pleistocene depocentre for material transported from the occupation chamber of Liang Bua, and a repository for human subsistence refuse, or pit-fall trap, via the rear passage. These physical attributes, and the antiquity of the faunal remains found thus far, indicate that Liang Bawah could contain an archive of the Late Pleistocene and, potentially, remains of H. floresiensis.
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38. Hidden species diversity of Australian burrowing snakes (Ramphotyphlops)
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Marin, Julie, Donnellan, Stephen C., Hedges, S. Blair, Puillandre, Nicolas, Aplin, Ken P., Doughty, Paul, Hutchinson, Mark, Couloux, Arnaud, Vidal, Nicolas, Evolution Paris-Seine, Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Nice Sophia Antipolis (1965 - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Université Sorbonne Paris Cité (USPC)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), University of Adelaide, Pennsylvania State University (Penn State), Penn State System, Western Australian Museum (WAM), South Australian Museum (SAM), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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cryptic species ,speciation ,Scolecophidia ,evolution ,[SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology ,hidden species ,[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy ,Ramphotyphlops - Abstract
International audience; The worm-like snakes (Scolecophidia; approximately 400 nominal extant species) have a conservative morphology and are among the most poorly-known terrestrial vertebrates. Although molecular evidence has helped determine their higher-level relationships, such data have rarely been used to discriminate among species. We generated a molecular data set for the continental Australian blindsnakes (genus Ramphotyphlops) to determine the concordance of molecular and morphological information in the taxonomic recognition of species. Our dataset included 741 specimens morphologically attributed to 27 nominal Ramphotyphlops species. We proposed species hypotheses (SHs) after analysis of sequences from a variable mitochondrial gene (cytochrome b) and examined these SHs with additional evidence from a nuclear gene (prolactin receptor) and geographical data. Although the nuclear marker was not as fast-evolving and discriminating as the mitochondrial marker, there was congruence among the mitochondrial, nuclear, and geographical data, suggesting that the actual number of species is at least two times the current number of recognized, nominal species. Several biogeographical barriers and complex phytogeographical and geological patterns appeared to be involved in the division of some burrowing snake populations and, by consequence, in their diversification and speciation through isolation.
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- 2013
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39. Long‐term occupation on the edge of the desert: Riwi Cave in the southern Kimberley, Western Australia
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BALME, JANE, O'CONNOR, SUE, MALONEY, TIM, VANNIEUWENHUYSE, DORCAS, APLIN, KEN, and DILKES‐HALL, INDIA ELLA
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Aboriginal people occupied Riwi, a limestone cave in the south‐central Kimberley region at the edge of the Great Sandy Desert of Western Australia, from about 46000 years ago through to the historical period. The cultural materials recovered from the Riwi excavations provide evidence of intermittent site use, especially in climatically wet periods. Changes in hunting patterns and in hearth‐making practices about 34000 years ago appear to accompany a change to drought resistant vegetation in the site surrounds. Occupation during the Last Glacial Maximum highlights variation in aridity trends in the broader environmental record. The most intensive use of the cave was during a wet period in the early to middle Holocene, when people appear to have received marine shell beads from the coast through social networks. While there is less evidence for late Holocene occupation, this probably reflects deposition processes rather than an absence of occupation. Les fouilles archéologiques de Riwi, une grotte karstique au sud du Kimberley (région située à la lisière nord du Great Sandy Désert en Australie‐Occidentale) ont permis de mettre en évidence des traces d'occupation aborigène datées entre 46000 ans jusqu'à la période historique. Le matériel découvert et les analyses paléoenvironnementales démontrent une utilisation intermittente du site, avec une préférence pour les périodes humides. Autour de 34000 ans, on observe un changement des pratiques liées à la chasse et la construction de foyers associé à l'expansion d'une végétation xérophile (adaptée à la sécheresse). La présence de niveaux datés du dernier maximum glaciaire démontre une fois de plus qu'il existe une grande variabilité au sein même des enregistrements environnementaux datés de cette époque. La période d'occupation la plus intense se situe durant une période humide au début de l'Holocène moyen au cours de laquelle on observe aussi des échanges culturels de longues distances mis en évidence par la présence de perles de coquillages marins provenant de régions costales. L'occupation datant de l'Holocène tardif est discrète, probablement due à un changement de dynamique sédimentaire dans la grotte.
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- 2019
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40. Morphological and molecular evidence supports specific recognition of the recently extinctBettongia anhydra(Marsupialia: Macropodidae)
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McDowell, Matthew C., primary, Haouchar, Dalal, additional, Aplin, Ken P., additional, Bunce, Michael, additional, Baynes, Alexander, additional, and Prideaux, Gavin J., additional
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- 2015
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41. Molecular and morphological assessment of Delma australis Kluge (Squamata: Pygopodidae), with a description of a new species from the biodiversity ‘hotspot’ of southwestern Western Australia
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MARYAN, BRAD, primary, BRENNAN, IAN G., additional, ADAMS, MARK, additional, and APLIN, KEN P., additional
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- 2015
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42. Taxonomic resolution of the Aprasia repens species-group (Squamata: Pygopodidae) from the Geraldton Sandplains: a description of a new species and additional mainland records of A. clairae
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Maryan, Brad, primary, Adams, Mark, additional, and Aplin, Ken P., additional
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- 2015
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43. Phylogenetic Species Identification in Rattus Highlights Rapid Radiation and Morphological Similarity of New Guinean Species
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Robins, Judith H., primary, Tintinger, Vernon, additional, Aplin, Ken P., additional, Hingston, Melanie, additional, Matisoo-Smith, Elizabeth, additional, Penny, David, additional, and Lavery, Shane D., additional
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- 2014
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44. Erratum: Morphological diversity and evolution of the spermatozoon in the mouse-related clade of rodents
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Breed, William G., primary, Leigh, Chris M., additional, Aplin, Ken P., additional, Shahin, Adel A.B., additional, and Avenant, Nico L., additional
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- 2014
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45. Molecular Genetic Evidence for the Place of Origin of the Pacific Rat, Rattus exulans
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Thomson, Vicki, primary, Aplin, Ken P., additional, Cooper, Alan, additional, Hisheh, Susan, additional, Suzuki, Hitoshi, additional, Maryanto, Ibnu, additional, Yap, Grace, additional, and Donnellan, Stephen C., additional
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- 2014
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46. Field methods for rodent studies in Asia and the Indo-Pacific
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Aplin, Ken P., Brown, Peter R., Jacob, Jens, Krebs, Charles J., and Singleton, Grant R.
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Farm Management - Published
- 2003
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47. Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA
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Suzuki, Hitoshi, Nunome, Mitsuo, Kinoshita, Gohta, Aplin, Ken P., Vogel, Peter, Kryukov, Alexey P., Jin, Mei-Lei, Han, Sang-Hoon, Maryanto, Ibnu, Tsuchiya, Kimiyuki, Ikeda, Hidetoshi, Shiroishi, Toshihiko, Yonekawa, Hiromichi, Moriwaki, Kazuo, Suzuki, Hitoshi, Nunome, Mitsuo, Kinoshita, Gohta, Aplin, Ken P., Vogel, Peter, Kryukov, Alexey P., Jin, Mei-Lei, Han, Sang-Hoon, Maryanto, Ibnu, Tsuchiya, Kimiyuki, Ikeda, Hidetoshi, Shiroishi, Toshihiko, Yonekawa, Hiromichi, and Moriwaki, Kazuo
- Abstract
We examined the sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 286 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of further clarifying evolutionary episodes of this species before and after the onset of human-mediated long-distance dispersals. Phylogenetic analysis of the expanded data detected five equally distinct clades, with geographic ranges of northern Eurasia (musculus, MUS), India and Southeast Asia (castaneus, CAS), Nepal (unspecified, NEP), western Europe (domesticus, DOM) and Yemen (gentilulus). Our results confirm previous suggestions of Southwestern Asia as the likely place of origin of M. musculus and the region of Iran, Afghanistan, Pakistan, and northern India, specifically as the ancestral homeland of CAS. The divergence of the subspecies lineages and of internal sublineage differentiation within CAS were estimated to be 0.37-0.47 and 0.14-0.23 million years ago (mya), respectively, assuming a split of M. musculus and Mus spretus at 1.7 mya. Of the four CAS sublineages detected, only one extends to eastern parts of India, Southeast Asia, Indonesia, Philippines, South China, Northeast China, Primorye, Sakhalin and Japan, implying a dramatic range expansion of CAS out of its homeland during an evolutionary short time, perhaps associated with the spread of agricultural practices. Multiple and non-coincident eastward dispersal events of MUS sublineages to distant geographic areas, such as northern China, Russia and Korea, are inferred, with the possibility of several different routes.
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- 2013
48. Re-excavation of Dabangay, a mid-Holocene settlement site on Mabuyag in western Torres Strait
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Wright, Duncan, Hiscock, Peter, Aplin, Ken P., Wright, Duncan, Hiscock, Peter, and Aplin, Ken P.
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The discovery and initial excavation of Dabangay in 2006 established a 7200 year chronology for human settlement on Mabuyag (Mabuiag) in western Torres Strait. This was one of only two Torres Strait sites to pre-date 4000 years ago, providing a rare opportunity to study human activities spanning the mid-to-late Holocene. Remarkable organic preservation and a large mid-Holocene stone artefact assemblage provided insights into long-term continuity and change in lithic technologies and economic strategies; however, results remained preliminary owing to uncertainties about site disturbance. This paper presents results from a second field season of excavations at Dabangay. We suggest chronological association between emerging lithic technologies and altered subsistence practices. Large marine vertebrate bone (present in small quantities from initial settlement), increased after 4200 years ago coincident with increased preference for production of quartz bipolar flakes. A further development after 1800–1600 years ago involved a substantial increase in large and small marine vertebrates and a further increase in the ratio of quartz to igneous lithics.
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- 2013
49. A new species of Halmaheramys(Rodentia: Muridae) from Bisa and Obi Islands (North Maluku Province, Indonesia)
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Fabre, Pierre-Henri, Reeve, Andrew Hart, Fitriana, Yuli S, Aplin, Ken P, and Helgen, Kristofer M
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We describe a new species of murine rodent from a skull collected on Bisa Island and 3 specimens from Obi Island, North Maluku Province, Indonesia. Molecular and morphological data indicate a close relationship with Halmaheramys bokimekot(Fabre et al. 2013). The new species is characterized by its combination of large size; short tail with large scales; spiny, coarse, dark dorsal pelage with long black guard hairs; and a dark gray ventral pelage that contrasts slightly with the dorsum. The Bisa specimen displays unusual zygomatic arch morphology, which may be a disease-related deformity, or potentially a sexually dimorphic trait. The new species shares several external and cranio-mandibular features with its sister species from Halmahera that differ from those of Rattusspecies, including a spiny pelt, deep palatine sulci, a high rostrum and relatively flat dorsal profile, short incisive foramina, short palatal bridge, and molars with simple occlusal patterns. Although certain morphological characteristics of the new taxon suggest an affinity with the taxonomically diverse and geographically widespread Rattus, in other respects it clearly fits into the Wallacean clade containing Bunomys, Paruromys, and Taeromys, as indicated by molecular phylogenetic analyses. Along with the recent discovery of Halmaheramys, recognition of this new species from Bisa and Obi Islands underscores the north Moluccan region’s high endemism, conservation importance, and the urgent need for a better inventory of its biodiversity.Kami mendeskripsikan tikus jenis baru berdasarkan satu spesimen tengkorak yang dikoleksi dari Pulau Bisa dan 3 spesimen dari Pulau Obi, Propinsi Maluku Utara, Indonesia. Data molekuler dan morfologi menunjukkan adanya hubungan yang erat dengan Halmaheramys bokimekot(Fabre et al. 2013). Jenis baru ini dicirikan dengan kombinasi berbagai karakter yaitu ukuran tubuh besar; ekor pendek dengan sisik besar; rambut kasar, berduri, di bagian dorsal berwarna gelap dengan rambut-rambut penjaga panjang berwarna hitam; dan rambut di bagian ventral berwarna abu-abu tua, sedikit kontras dengan bagian dorsal. Pada “zygomatic arch” spesimen tengkorak dari Pulau Bisa terlihat berbeda, hal ini mungkin merupakan kelainan bentuk akibat penyakit atau berpotensi sebagai ciri seksual dimorfisme. Jenis baru ini memiliki beberapa ciri eksternal dan cranio-mandibular yang mirip dengan spesies sejenisnya dari Halmahera yang diketahui berbeda dari jenis-jenis Rattusantara lain kulit tertutup rambut berduri, sulkus palatum dalam, rostrum tinggi dengan profil datar di bagian dorsal, foramen incisifum pendek, rigi palatum pendek, dan pola oklusi sederhana pada gigi geraham. Meskipun karakteristik morfologi tertentu dari jenis baru ini menunjukkan kemungkinan afinitas dengan genus Rattusyang secara geografi jenisnya beragam dan terdistribusi luas, namun berdasarkan hasil analisa filogenetik molekuler, spesies baru ini jelas berada dalam satu klade dengan klaster Wallacean yang terdiri dari Bunomys, Paruromys, dan Taeromys. Seiring dengan penemuan Halmaheramysbaru-baru ini, pengenalan spesies baru dari Kepulauan Bisa dan Obi menggarisbawahi tingginya endemisitas dan pentingnya konservasi di Maluku Utara, serta urgensi inventarisasi keanekaragaman hayati yang lebih baik.
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- 2018
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50. From savannah to rainforest: Changing environments and human occupation at Liang Lemdubu, Aru Islands, Maluku (Indonesia)
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O'Connor, S., Aplin, Ken P., Spriggs, Matthew, Veth, Peter, and Ayliffe, Linda K.
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OCTOPUS database ,Archaeology ,Sahul ,SahulArch ,Radiocarbon - Abstract
The Am Islands lie near the edge ot the Australian continental shelf in the Arafura Sea, approximately 150 km south of the coast of Papua (formerly Irian Jaya). For at least the first 40,000 years of occupation of Sahul they formed part of a continuous land bridge linking Australia and New Guinea. During this time they would have been a dissected limestone plateau on the exposed Carpentarian Plain. About 14,000 years BP sea level rose and began to encircle the island group, separating it from Australia and by 11,500 years BP it was completely separated from New Guinea. The presence on Am of numerous marsupials, the cassowary and Birds of Paradise attest to this shared history, a fact first recognised by Darwin’s co-discoverer of the theory of evolution by natural selection, the naturalist Alfred Russel Wallace (Wallace 1869)., Series: Advances in Geoecology (34). Chapter 14, pages 279--306.
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- 2002
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