1. Linker Variation and Structure–Activity Relationship Analyses of Carboxylic Acid-based Small Molecule STAT3 Inhibitors
- Author
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Anna Rabkin, Erin Ichinotsubo, Christine Brotherton-Pleiss, Raj Shah, Peibin Yue, Suzie Chen, Ana Carolina Costa Araujo, Megan J. Lantz, Marcus A. Tius, Francisco Javier Lopez-Tapia, Bruna Reis dos Santos, James Turkson, and Heide Murakami
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,Hydroxamic acid ,Stereochemistry ,Carboxylic acid ,Organic Chemistry ,Biochemistry ,Small molecule ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,chemistry ,030220 oncology & carcinogenesis ,Drug Discovery ,Structure–activity relationship ,Amine gas treating ,Linker ,Salicylic acid ,Benzoic acid - Abstract
[Image: see text] The molecular determinants for the activities of the reported benzoic acid (SH4–54), salicylic acid (BP-1–102), and benzohydroxamic acid (SH5–07)-based STAT3 inhibitors were investigated to design optimized analogues. All three leads are based on an N-methylglycinamide scaffold, with its two amine groups condensed with three different functionalities. The three functionalities and the CH(2) group of the glycinamide scaffold were separately modified. The replacement of the pentafluorobenzene or cyclohexylbenzene, or replacing the benzene ring of the aromatic carboxylic or hydroxamic acid motif with heterocyclic components (containing nitrogen and oxygen elements) all decreased potency. Notably, the Ala-linker analogues, 1a and 2v, and the Pro-based derivative 5d, all with (R)-configuration at the chiral center, had improved inhibitory activity and selectivity against STAT3 DNA-binding activity in vitro, with IC(50) of 3.0 ± 0.9, 1.80 ± 0.94, and 2.4 ± 0.2 μM, respectively. Compounds 1a, 2v, 5d, and other analogues inhibited constitutive STAT3 phosphorylation and activation in human breast cancer and melanoma lines, and blocked tumor cell viability, growth, colony formation, and migration in vitro. Pro-based analogue, 5h, with a relatively polar tetrahydropyranyl (THP) ring, instead of the cyclohexyl, showed improved permeability. In general, the (R)-configuration Pro-based analogs showed the overall best profile, including physicochemical properties (e.g., microsomal metabolic stability, Caco-2 permeability), and in particular, 5d showed improved tumor-cell specificity.
- Published
- 2018
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