66 results on '"Angela Cicatelli"'
Search Results
2. Exploring the crop epigenome: a comparison of DNA methylation profiling techniques
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Dolores Rita Agius, Aliki Kapazoglou, Evangelia Avramidou, Miroslav Baranek, Elena Carneros, Elena Caro, Stefano Castiglione, Angela Cicatelli, Aleksandra Radanovic, Jean-Paul Ebejer, Daniel Gackowski, Francesco Guarino, Andrea Gulyás, Norbert Hidvégi, Hans Hoenicka, Vera Inácio, Frank Johannes, Erna Karalija, Michal Lieberman-Lazarovich, Federico Martinelli, Stéphane Maury, Velimir Mladenov, Leonor Morais-Cecílio, Ales Pecinka, Eleni Tani, Pilar S. Testillano, Dimitar Todorov, Luis Valledor, and Valya Vassileva
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crop epigenome ,DNA methylation profiling ,bisulfite sequencing ,next-generation sequencing ,immunological techniques ,mass spectrometry ,Plant culture ,SB1-1110 - Abstract
Epigenetic modifications play a vital role in the preservation of genome integrity and in the regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic control, impacts growth, development, stress response and adaptability of all organisms, including plants. The detection of DNA methylation marks is crucial for understanding the mechanisms underlying these processes and for developing strategies to improve productivity and stress resistance of crop plants. There are different methods for detecting plant DNA methylation, such as bisulfite sequencing, methylation-sensitive amplified polymorphism, genome-wide DNA methylation analysis, methylated DNA immunoprecipitation sequencing, reduced representation bisulfite sequencing, MS and immuno-based techniques. These profiling approaches vary in many aspects, including DNA input, resolution, genomic region coverage, and bioinformatics analysis. Selecting an appropriate methylation screening approach requires an understanding of all these techniques. This review provides an overview of DNA methylation profiling methods in crop plants, along with comparisons of the efficacy of these techniques between model and crop plants. The strengths and limitations of each methodological approach are outlined, and the importance of considering both technical and biological factors are highlighted. Additionally, methods for modulating DNA methylation in model and crop species are presented. Overall, this review will assist scientists in making informed decisions when selecting an appropriate DNA methylation profiling method.
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- 2023
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3. Counteracting action of Bacillus stratosphericus and Staphylococcus succinus strains against deleterious salt effects on Zea mays L.
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Gianmaria Oliva, Giovanni Vigliotta, Mattia Terzaghi, Francesco Guarino, Angela Cicatelli, Antonio Montagnoli, and Stefano Castiglione
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PGPR ,soil salinization ,antioxidant enzymes ,ROS ,seed coating ,sustainable agriculture ,Microbiology ,QR1-502 - Abstract
The salinization of soil is the process of progressive accumulation of salts such as sulfates, sodium, or chlorides into the soil. The increased level of salt has significant effects on glycophyte plants, such as rice, maize, and wheat, which are staple foods for the world's population. Consequently, it is important to develop biotechnologies that improve crops and clean up the soil. Among other remediation methods, there is an environmentally friendly approach to ameliorate the cultivation of glycophyte plants in saline soil, namely, the use of microorganisms tolerant to salt with growth-promoting features. Plant growth-promoting rhizobacteria (PGPR) can improve plant growth by colonizing their roots and playing a vital role in helping plants to establish and grow in nutrient-deficient conditions. Our research aimed to test in vivo halotolerant PGPR, isolated and characterized in vitro in a previous study conducted in our laboratory, inoculating them on maize seedlings to improve their growth in the presence of sodium chloride. The bacterial inoculation was performed using the seed-coating method, and the produced effects were evaluated by morphometric analysis, quantization of ion contents (sodium, potassium), produced biomass, both for epigeal (shoot) and hypogeal (root) organs, and by measuring salt-induced oxidative damage. The results showed an increase in biomass and sodium tolerance and even a reduction of oxidative stress in seedlings pretreated with a PGPR bacterial consortium (Staphylococcus succinus + Bacillus stratosphericus) over the control. Moreover, we observed that salt reduces growth and alters root system traits of maize seedlings, while bacterial treatment improves plant growth and partially restores the root architecture system in saline stress conditions. Therefore, the PGPR seed-coating or seedling treatment could be an effective strategy to enhance sustainable agriculture in saline soils due to the protection of the plants from their inhibitory effect.
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- 2023
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4. Exploring the Potential of Four Novel Halotolerant Bacterial Strains as Plant-Growth-Promoting Rhizobacteria (PGPR) under Saline Conditions
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Gianmaria Oliva, Luca Di Stasio, Giovanni Vigliotta, Francesco Guarino, Angela Cicatelli, and Stefano Castiglione
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salinity ,NaCl tolerance ,bacterial consortium ,Halomonas ,Bacillus ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Soil salinity, due to natural phenomena or human activities, alters the water potential, which in turn affects plant growth, negatively influencing their nutrient and water uptake. Plant-growth-promoting rhizobacteria (PGPR) can be used to counteract these negative effects, especially in glycophytes. The aim of our study was to characterize physiologically, genetically, and biochemically the novel halotolerant/halophilic bacteria isolated in our previous work. We evaluated the plant-growth-promoting (PGP) features and NaCl regulation’s roles in them. In this regard, analysis based on 16S rDNA sequences confirmed that our isolates are distinct bacterial strains, probably belonging to new species, which we named Bacillus sp. M21 and M23 and Halomonas sp. QH23 and QH24. In literature, it is known that many species of Halomonas and Bacillus genera produce factors regulating plant development, such as indole-3-acetic acid (IAA), ammonium, and siderophores; and their efficiency in promoting plant growth and productivity was also demonstrated in vivo. We demonstrated that the newly isolated strains exhibit different PGP activities, highlighting how the latter are regulated by NaCl and in a strain-dependent manner. In particular, the main results showed that NaCl negatively affects the production of IAA in QH23, M21 and M23, whereas it promotes it in QH24, where it is strictly salt-dependent. Both Halomonas strains produce ammonium only in the presence of NaCl, directly correlated to its concentration. The opposite occurs in Bacillus strains, where salt reduces its production up to ten times. Overall, the results underline how halotolerance is a preferable, but not sufficient, condition for considering a PGPR potentially useful in applications aimed at improving the tolerance and productivity of crops in saline soils.
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- 2023
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5. An Epigenetic Alphabet of Crop Adaptation to Climate Change
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Francesco Guarino, Angela Cicatelli, Stefano Castiglione, Dolores R. Agius, Gul Ebru Orhun, Sotirios Fragkostefanakis, Julie Leclercq, Judit Dobránszki, Eirini Kaiserli, Michal Lieberman-Lazarovich, Merike Sõmera, Cecilia Sarmiento, Cristina Vettori, Donatella Paffetti, Anna M. G. Poma, Panagiotis N. Moschou, Mateo Gašparović, Sanaz Yousefi, Chiara Vergata, Margot M. J. Berger, Philippe Gallusci, Dragana Miladinović, and Federico Martinelli
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abiotic stresses ,adaptation ,climate change ,epigenetics ,environmental stresses ,epigenetic code ,Genetics ,QH426-470 - Abstract
Crop adaptation to climate change is in a part attributed to epigenetic mechanisms which are related to response to abiotic and biotic stresses. Although recent studies increased our knowledge on the nature of these mechanisms, epigenetics remains under-investigated and still poorly understood in many, especially non-model, plants, Epigenetic modifications are traditionally divided into two main groups, DNA methylation and histone modifications that lead to chromatin remodeling and the regulation of genome functioning. In this review, we outline the most recent and interesting findings on crop epigenetic responses to the environmental cues that are most relevant to climate change. In addition, we discuss a speculative point of view, in which we try to decipher the “epigenetic alphabet” that underlies crop adaptation mechanisms to climate change. The understanding of these mechanisms will pave the way to new strategies to design and implement the next generation of cultivars with a broad range of tolerance/resistance to stresses as well as balanced agronomic traits, with a limited loss of (epi)genetic variability.
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- 2022
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6. Normalized Workflow to Optimize Hybrid De Novo Transcriptome Assembly for Non-Model Species: A Case Study in Lilium ledebourii (Baker) Boiss
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Morteza Sheikh-Assadi, Roohangiz Naderi, Seyed Alireza Salami, Mohsen Kafi, Reza Fatahi, Vahid Shariati, Federico Martinelli, Angela Cicatelli, Maria Triassi, Francesco Guarino, Giovanni Improta, and Manuel Gonzalo Claros
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transcriptomics ,de novo assembly ,hybrid transcriptome ,normalized comparison ,optimization ,non-model organisms ,Botany ,QK1-989 - Abstract
A high-quality transcriptome is required to advance numerous bioinformatics workflows. Nevertheless, the effectuality of tools for de novo assembly and real precision assembled transcriptomes looks somewhat unexplored, particularly for non-model organisms with complicated (very long, heterozygous, polyploid) genomes. To disclose the performance of various transcriptome assembly programs, this study built 11 single assemblies and analyzed their performance on some significant reference-free and reference-based criteria. As well as to reconfirm the outputs of benchmarks, 55 BLAST were performed and compared using 11 constructed transcriptomes. Concisely, normalized benchmarking demonstrated that Velvet–Oases suffer from the worst results, while the EvidentialGene strategy can provide the most comprehensive and accurate transcriptome of Lilium ledebourii (Baker) Boiss. The BLAST results also confirmed the superiority of EvidentialGene, so it could capture even up to 59% more (than Velvet–Oases) unique gene hits. To promote assembly optimization, with the help of normalized benchmarking, PCA and AHC, it is emphasized that each metric can only provide part of the transcriptome status, and one should never settle for just a few evaluation criteria. This study supplies a framework for benchmarking and optimizing the efficiency of assembly approaches to analyze RNA-Seq data and reveals that selecting an inefficient assembly strategy might result in less identification of unique gene hits.
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- 2022
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7. Effects of Zinc Pollution and Compost Amendment on the Root Microbiome of a Metal Tolerant Poplar Clone
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Francesco Guarino, Giovanni Improta, Maria Triassi, Angela Cicatelli, and Stefano Castiglione
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phytoremediation ,metals ,compost ,microbiome ,bacteria ,fungi ,Microbiology ,QR1-502 - Abstract
Until recently, many phytoremediation studies were focused solely on a plants ability to reclaim heavy metal (HM) polluted soil through a range of different processes, such as phytoextraction and phytostabilization. However, the interaction between plants and their own rhizosphere microbiome represents a new research frontier for phytoremediation. Our hypothesis is that rhizomicrobiome might play a key role in plant wellness and in the response to external stimuli; therefore, this study aimed to shed light the rhizomicrobiome dynamics after an organic amendment (e.g., compost) and/or HM pollution (e.g., Zn), and its relation with plant reclamation ability. To reach this goal we set up a greenhouse experiment cultivating in pot an elite black poplar clone (N12) selected in the past for its excellent ability to reclaim heavy metals. N12 saplings were grown on a soil amended with compost and/or spiked with high Zn doses. At the end of the experiment, we observed that the compost amendment strongly increased the foliar size but did not affect significantly the Zn accumulation in plant. Furthermore, the rhizomicrobiome communities (bacteria and fungi), investigated through NGS, highlighted how α diversity increased in all treatments compared to the untreated N12 saplings. Soil compost amendment, as well as Zn pollution, strongly modified the bacterial rhizomicrobiome structure. Conversely, the variation of the fungal rhizomicrobiome was only marginally affected by soil Zn addition, and only partially impaired by compost. Nevertheless, substantial alterations of the fungal community were due to both compost and Zn. Together, our experimental results revealed that organic amendment increased the bacterial resistance to external stimuli whilst, in the case of fungi, the amendment made the fungi microbiome more susceptible. Finally, the greater microbiome biodiversity does not imply, in this case, a better plant wellness or phytoremediation ability, although the microbiome plays a role in the external stimuli response supporting plant life.
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- 2020
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8. Botanical, Phytochemical, Anti-Microbial and Pharmaceutical Characteristics of Hawthorn (Crataegus monogyna Jacq.), Rosaceae
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Federico Martinelli, Anna Perrone, Sanaz Yousefi, Alessio Papini, Stefano Castiglione, Francesco Guarino, Angela Cicatelli, Mitra Aelaei, Neda Arad, Mansour Gholami, and Seyed Alireza Salami
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Hawthorn ,flavonoids ,pharmaceutical ,phytochemical ,free radical scavenging ,Organic chemistry ,QD241-441 - Abstract
Hawthorn (Crataegus monogyna Jacq.) is a wild edible fruit tree of the genus Crataegus, one of the most interesting genera of the Rosaceae family. This review is the first to consider, all together, the pharmaceutical, phytochemical, functional and therapeutic properties of C. monogyna based on numerous valuable secondary metabolites, including flavonoids, vitamin C, glycoside, anthocyanin, saponin, tannin and antioxidants. Previous reviews dealt with the properties of all species of the entire genera. We highlight the multi-therapeutic role that C. monogyna extracts could have in the treatment of different chronic and degenerative diseases, mainly focusing on flavonoids. In the first part of this comprehensive review, we describe the main botanical characteristics and summarize the studies which have been performed on the morphological and genetic characterization of the C. monogyna germplasm. In the second part, the key metabolites and their nutritional and pharmaceutical properties are described. This work could be an essential resource for promoting future therapeutic formulations based on this natural and potent bioactive plant extract.
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- 2021
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9. Influence of the Choice of Cultivar and Soil Fertilization on PTE Concentrations in Lactuca sativa L. in the Framework of the Regenerative Agriculture Revolution
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Daniela Baldantoni, Alessandro Bellino, Angela Cicatelli, and Stefano Castiglione
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lettuce cultivars ,non-essential elements ,nutrients ,mineral fertilization ,biowaste compost amendment ,leaf and root concentrations ,Agriculture - Abstract
Evaluating the relative weight of the choice of cultivar and soil fertilization on potentially toxic elements (PTEs) accumulation is crucial in promoting informed decisions in the framework of regenerative agriculture. To this end, 11 PTEs (Cd, Cr, Cu, Fe, K, Mg, Mn, Na, Ni, Pb, Zn) were determined in both leaves and roots of six cultivars (Stylist, Xanadu, Aljeva, Bacio, Analena, Vincenzo) of lettuce (Lactuca sativa L.) grown side by side on mineral fertilized or biowaste compost amended soils, under greenhouse conditions. The use of multivariate and linear modelling approaches indicated that the organ and cultivar primarily account for the variability in PTE concentrations. In terms of PTE partitioning between organs, Cd and Mg were preferentially accumulated in leaves, whereas Cu, Pb, K and Zn in roots. As for the cultivar, Xanadu showed the highest concentrations of several PTEs, with Cd reaching concerning levels. Fertilization had a detectable contribution only on Cd accumulation, slightly increased in leaves by compost. Findings highlight the key role of cultivar choice in guaranteeing food safety and grant the possibility to adopt biowaste compost in regenerative agriculture without concerns about PTE accumulation enhancements in lettuce, but demand a cautionary approach in the case of Cd.
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- 2021
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10. Editorial: Effects of Plant-Microbiome Interactions on Phyto- and Bio-Remediation Capacity
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Angela Cicatelli, Nuria Ferrol, Piotr Rozpadek, and Stefano Castiglione
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bio-remediation ,interaction ,PGPR ,endophytes ,mycorrhiza ,NGS ,Plant culture ,SB1-1110 - Published
- 2019
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11. The use of MSAP reveals epigenetic diversity of the invasive clonal populations of Arundo donax L.
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Francesco Guarino, Angela Cicatelli, Giuseppe Brundu, Giovanni Improta, Maria Triassi, and Stefano Castiglione
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Medicine ,Science - Abstract
Among the most widespread plant species with clonal reproduction Arundo donax L. represents one of most studied one characterized by very low genetic biodiversity. Although it is a perennial rhizomatous tall grass native to eastern and southern Asia, it spreads only asexually in the invaded range all over the world thriving very well in a large array of pedo-climatic conditions. This ability to morphologically or physiologically adapt to a broad array of conditions could be attributed to epigenetic mechanisms. To shade light on this relevant issue, 96 stems of A. donax from spontaneous populations distributed across the Italian invaded range (island of Sardinia, Northern and Southern Italy) were analysed. Leaf DNAs were extracted and processed through AFLPs and MSAPs for defining either genetic and epigenetic profiles. Both analyses clearly showed that the A. donax populations of Sardinia island are genetically distinct from those of Italian mainland; AFLPs showed an extremely low genetic biodiversity due to vegetative reproduction, whilst, epi-biodiversity, estimated through MSAP marker, increased within the analyzed populations. These results suggest that the capability of A. donax to invade and thrive in diverse environmental conditions can be, at least, partially attributed to a higher epigenetic variability. Therefore, the different DNA methylation status may have significant and important biological meaning, in particular, in the case of invasive clonal plants such as A. donax, also for the biodiversity definition, and MSAP marker can be considered an useful and cost effective marker to reveal it.
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- 2019
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12. Ecotype-Level Genetic Biodiversity of Five Italian Traditional Crops
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Francesco Guarino, Stefano Castiglione, Giovanni Improta, Maria Triassi, and Angela Cicatelli
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Medicine ,Science - Abstract
Italy displays a high level of agrobiodiversity due to its diversified pedoclimatic zones. The Administrative Region of Campania includes several and divergent biomes, occurring close to each other. In fact, the distance between a sea level environment and that of high mountains can be less than 20 km. These environmental conditions allow the cultivation of many different crops and vegetables, represented by diverse ecotypes and varieties that are well adapted to the distribution range where they have been selected and grown. Efforts to maintain and further increase biodiversity in farming systems require a better understanding of the existing diversity created by traditional farming practices. The aim of our study was to identify and molecularly characterize several ecotypes belonging to five horticultural species commonly cultivated in Campania. In particular, we analysed five ecotypes of maize, two of garlic, four of onion, one of escarole, and two of courgette by means of simple sequence repeat (SSR) markers in order to evaluate their level of genetic biodiversity. The results reveal, for the first time, the high genetic biodiversity of horticultural ecotypes of the Campania Region. This feature is very important to improve the quality and productivity of agroecosystems.
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- 2019
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13. Effects of Compost Amendment on Glycophyte and Halophyte Crops Grown on Saline Soils: Isolation and Characterization of Rhizobacteria with Plant Growth Promoting Features and High Salt Resistance
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Stefano Castiglione, Gianmaria Oliva, Giovanni Vigliotta, Giorgia Novello, Elisa Gamalero, Guido Lingua, Angela Cicatelli, and Francesco Guarino
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salt stress tolerance ,organic amendment ,halo/thermo-tolerance ,sustainable agriculture ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Soil salinization and desertification due to climate change are the most relevant challenges for the agriculture of the 21st century. Soil compost amendment and plant growth promoting rhizobacteria (PGP-R) are valuable tools to mitigate salinization and desertification impacts on agricultural soils. Selection of novel halo/thermo-tolerant bacteria from the rhizosphere of glicophytes and halophytes, grown on soil compost amended and watered with 150/300 mM NaCl, was the main objective of our study. Beneficial effects on the biomass, well-being and resilience, exerted on the assayed crops (maize, tomato, sunflower and quinoa), were clearly observable when soils were amended with 20% compost despite the very high soil electric conductivity (EC). Soil compost amendment not only was able to increase crop growth and biomass, but also their resilience to the stress caused by very high soil EC (up to 20 dS m−1). Moreover, compost amendment has proved itself a valuable source of highly halo-(4.0 M NaCl)/thermo tolerant rhizobacteria (55 °C), showing typical PGP features. Among the 13 rhizobacterial isolates, molecularly and biochemically characterized, two bacterial strains showed several biochemical PGP features. The use of compost is growing all around the world reducing considerably for farmers soil fertilization costs. In fact, only in Italy its utilization has ensured, in the last years, a saving of 650 million euro for the farmers, without taking into account the environment and human health benefits. Furthermore, the isolation of halo/thermo-tolerant PGPR strains and their use will allow the recovery and cultivation of hundreds of thousands of hectares of saline and arid soils now unproductive, making agriculture more respectful of agro-ecosystems also in view of upcoming climate change.
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- 2021
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14. Variability in DNA Methylation and Generational Plasticity in the Lombardy Poplar, a Single Genotype Worldwide Distributed Since the Eighteenth Century
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An Vanden Broeck, Karen Cox, Rein Brys, Stefano Castiglione, Angela Cicatelli, Francesco Guarino, Berthold Heinze, Marijke Steenackers, and Kristine Vander Mijnsbrugge
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bud phenology ,DNA methylation ,ecological epigenetics ,epigenetic variation ,Lombardy poplar ,Populus nigra ,Plant culture ,SB1-1110 - Abstract
In the absence of genetic diversity, plants rely on the capacity of phenotypic plasticity to cope with shifts in environmental conditions. Understanding the mechanisms behind phenotypic plasticity and how local phenotypic adjustments are transferred to clonal offspring, will provide insight into its ecological and evolutionary significance. Epigenetic changes have recently been proposed to play a crucial role in rapid environmental adaptation. While the contribution of epigenetic changes to phenotypic plasticity has been extensively studied in sexual reproducing model organisms, little work has been done on vegetative generations of asexual reproducing plant species. We studied the variability of DNA methylation and bud set phenology of the Lombardy poplar (Populus nigra cv. Italica Duroi), a cultivated tree representing a single genotype worldwide distributed since the eighteenth century. Bud set observations and CpG methyl polymorphisms were studied on vegetative offspring resulting from cuttings grown for one season in a common glasshouse environment. The cuttings were collected from 60 adult Lombardy poplars growing in different environments. The physiological condition of the cuttings was determined by measuring weight and nutrient condition. Methylation sensitive amplified polymorphisms were used to obtain global patterns of DNA methylation. Using logistic regression models, we investigated correlations among epigenotype, bud phenology, and the climate at the home site of the donor trees, while accounting for physiological effects. We found significant epigenetic variation as well as significant variation in bud phenology, in the absence of genetic variation. Remarkably, phenology of bud set observed at the end of the growing season in the common environment was significantly correlated with climate variables at the home site of the mother trees, specifically the average temperature of January and monthly potential evapotranspiration. Although we could not directly detect significant effects of epigenetic variation on phenology, our results suggest that, in the Lombardy poplar, epigenetic marks contribute to the variation of phenotypic response that can be transferred onto asexually reproduced offspring resulting in locally adapted ecotypes. This contributes to the growing evidence that epigenetic-based transgenerational inheritance might be relevant for adaptation and evolution in contrasting or rapidly changing environments.
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- 2018
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15. High Biodiversity Arises from the Analyses of Morphometric, Biochemical and Genetic Data in Ancient Olive Trees of South of Italy
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Nicola Criscuolo, Francesco Guarino, Claudia Angelini, Stefano Castiglione, Tonino Caruso, and Angela Cicatelli
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diversity ,fatty acids ,microsatellites ,multivariate statistics ,Olea europaea L. ,R. ,Botany ,QK1-989 - Abstract
Morphometric, biochemical and genetic analyses were conducted on Olea europaea L. of Campania, an area of Southern Italy highly suited to the cultivation of olive trees and the production of extra virgin olive oil (EVOO). We aimed to characterize the distribution of morphological, biochemical and genetic diversity in this area and to develop a practical tool to aid traceability of oils. Phenotypes were characterized using morphometric data of drupes and leaves; biochemical and genetic diversity were assessed on the basis of the fatty acid composition of the EVOOs and with microsatellite markers, respectively. We provide an open-source tool as a novel R package titled ‘OliveR’, useful in performing multivariate data analysis using a point and click interactive approach. These analyses highlight a clear correlation among the morphological, biochemical and genetic profiles of samples with four collection sites, and confirm that Southern Italy represents a wide reservoir of phenotypic and genetic variability.
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- 2019
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16. Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?
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Francesco Guarino, Angela Cicatelli, Giuseppe Brundu, Berthold Heinze, and Stefano Castiglione
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Medicine ,Science - Abstract
The widespread poplar populations of Sardinia are vegetatively propagated and live in different natural environments forming large monoclonal stands. The main goals of the present study were: i) to investigate/measure the epigenetic diversity of the poplar populations by determining their DNA methylation status; ii) to assess if and how methylation status influences population clustering; iii) to shed light on the changes that occur in the epigenome of ramets of the same poplar clone. To these purposes, 83 white poplar trees were sampled at different locations on the island of Sardinia. Methylation sensitive amplified polymorphism analysis was carried out on the genomic DNA extracted from leaves at the same juvenile stage. The study showed that the genetic biodiversity of poplars is quite limited but it is counterbalanced by epigenetic inter-population molecular variability. The comparison between MspI and HpaII DNA fragmentation profiles revealed that environmental conditions strongly influence hemi-methylation of the inner cytosine. The variable epigenetic status of Sardinian white poplars revealed a decreased number of population clusters. Landscape genetics analyses clearly demonstrated that ramets of the same clone were differentially methylated in relation to their geographic position. Therefore, our data support the notion that studies on plant biodiversity should no longer be restricted to genetic aspects, especially in the case of vegetatively propagated plant species.
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- 2015
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17. Landfill leachate treatment by a combination of a multiple plant hybrid constructed wetland system with a solar photoFenton process in a raceway pond reactor
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Ivano Spiniello, Marco De Carluccio, Stefano Castiglione, Enzhe Amineva, Natalia Kostryukova, Angela Cicatelli, Luigi Rizzo, and Francesco Guarino
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Industrial wastewater ,Environmental Engineering ,Advanced oxidation processes ,Green technologies ,Phytoremediation ,Water treatment ,General Medicine ,Management, Monitoring, Policy and Law ,Waste Management and Disposal - Published
- 2023
18. Transgenerational Effects of Chromium Stress at Phenotypic and Molecular Level in Arabidopsis Thaliana
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Federico Martinelli, Ilaria Colzi, Cristina Gonnelli, Chiara Vergata, Gabriele Golia, Andrea Coppi, Maria Beatrice Castellani, Antonio Giovino, Matteo Buti, Tommaso Sabato, Maurizio Capuana, Alessio Aprile, Luigi De Bellis, Angela Cicatelli, Francesco Guarino, Stefano Castiglione, Vassilis Fotopoulos, and Andreas G. Ioannou
- Published
- 2022
19. Genetic Diversity and Differentiation of Eleven Medicago Species from Campania Region Revealed by Nuclear and Chloroplast Microsatellites Markers
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Imene Khadidja Djedid, Mattia Terzaghi, Giuseppe Brundu, Angela Cicatelli, Meriem Laouar, Francesco Guarino, and Stefano Castiglione
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SSR markers ,Chloroplasts ,Polymorphism, Genetic ,DNA, Plant ,food and beverages ,Bayes Theorem ,QH426-470 ,universal chloroplast SSRs ,Medicago ,genetic analyses ,nuclear microsatellite ,Article ,Italy ,Genetics ,Genetics (clinical) ,Genome, Plant ,Phylogeny ,Microsatellite Repeats - Abstract
The species belonging to the genus Medicago are considered a very important genetic resource at global level both for planet’s food security and for sustainable rangelands management. The checklist of the Italian flora (2021) includes a total number of 40 Medicago species for Italy, and 27 for Campania region, with a number of doubtful records or related to species no more found in the wild. In this study, 10 Medicago species native to Campania region, and one archaeophyte (M. sativa), identified by means of morphological diagnostic characters, were analyzed in a blind test to assay the efficacy of nine microsatellite markers (five cp-SSRs and four n-SSRs). A total number of 33 individuals from 6 locations were sampled and genotyped. All markers were polymorphic, 40 alleles were obtained with n-SSRs ranging from 8–12 alleles per locus with an average of 10 alleles per marker, PIC values ranged from 0.672 to 0.847, and the most polymorphic SSR was MTIC 564. The cp-SSRs markers were highly polymorphic too; PIC values ranged from 0.644 to 0.891 with an average of 0.776, the most polymorphic cp-SSR was CCMP10. 56 alleles were obtained with cp-SSRs ranging from 7 to 17 alleles per locus with an average of 11. AMOVA analysis with n-SSR markers highlighted a great level of genetic differentiation among the 11 species, with a statistically significant fixation index (FST). UPGMA clustering and Bayesian-based population structure analysis assigned these 11 species to two main clusters, but the distribution of species within clusters was not the same for the two analyses. In conclusion, our results demonstrated that the combination of the used SSRs well distinguished the 11 Medicago species. Moreover, our results demonstrated that the use of a limited number of SSRs might be considered for further genetic studies on other Medicago species.
- Published
- 2022
20. Air quality biomonitoring through Olea europaea L.: The study case of 'Land of pyres'
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Giovanni Improta, Stefano Castiglione, Francesco Guarino, Maria Triassi, Angela Cicatelli, Guarino, F., Improta, G., Triassi, M., Castiglione, S., and Cicatelli, A.
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Environmental Engineering ,Health, Toxicology and Mutagenesis ,0208 environmental biotechnology ,02 engineering and technology ,010501 environmental sciences ,Urban area ,01 natural sciences ,Human health ,Environmental protection ,Air Pollution ,Olea ,Biomonitoring ,Air biomonitoring ,Environmental Chemistry ,Humans ,Air quality index ,0105 earth and related environmental sciences ,Vehicle Emissions ,geography ,geography.geographical_feature_category ,biology ,Land of pyres (fires) area ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,Contamination ,biology.organism_classification ,Pollution ,Enrichment factor ,020801 environmental engineering ,Olive trees ,Refuse Disposal ,Environmental science ,PTE ,Olive tree ,Waste disposal ,Biological Monitoring ,Environmental Monitoring - Abstract
The “Land of pyres”, namely “La Terra dei Fuochi”, is an area of Campania region (South-Italy), highly inhabited and comprises between the Provinces of Naples and Caserta, sadly known worldwide for the criminal activities related to the illegal waste disposal and burning. These fires, concomitantly with traffic emissions, might be the source of potential toxic element (PTE) dangerous for the human health and causing pathologies. In the framework of Correlation Health–Environment project, funded by the Campania region, eight municipalities (of area “Land of pyres”) and three remote sites have been bio-monitored using the olive (Olea europaea L.) plants as biomonitors. Leaves of olive plants were collected in each assayed municipality and the concentration of 11 metal(loid)s was evaluated by means of ICP-OES. Our findings revealed that the air of these municipalities was limitedly contaminated by PTE; in fact, only Sb, Al and Mn were detected in the olive leaves collected in some of the assayed municipalities and showed a high enrichment factors (EC) manly due, probably, to the vehicular traffic emissions. Furthermore, the concentrations of the other assayed PTEs were lower than those of Sb, Al and Mn. For these reasons we suppose that their emissions in the troposphere have been and are limited, and they mainly have a crustal origin. Even if our data are very comforting for those urban area, regarded by many as one of the most contaminated one in Italy, a great environment care, in any case, is always needed.
- Published
- 2021
21. Botanical, phytochemical, anti-microbial and pharmaceutical characteristics of hawthorn (Crataegusmonogyna jacq.), rosaceae
- Author
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Sanaz Yousefi, Francesco Guarino, Neda Arad, Anna Myriam Perrone, Stefano Castiglione, Alessio Papini, Mitra Aelaei, Mansour Gholami, Angela Cicatelli, Federico Martinelli, and Seyed Alireza Salami
- Subjects
Germplasm ,Flavonoids ,Free radical scavenging ,Hawthorn ,Pharmaceutical ,Phytochemical ,Rosaceae ,Crataegus monogyna ,Phytochemicals ,Saponin ,Pharmaceutical Science ,Organic chemistry ,Review ,Biology ,Crataegus ,Antioxidants ,Analytical Chemistry ,chemistry.chemical_compound ,QD241-441 ,Anti-Infective Agents ,Drug Discovery ,Tannin ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Traditional medicine ,Plant Extracts ,food and beverages ,biology.organism_classification ,chemistry ,Pharmaceutical Preparations ,Chemistry (miscellaneous) ,Anthocyanin ,Molecular Medicine - Abstract
Hawthorn (Crataegus monogyna Jacq.) is a wild edible fruit tree of the genus Crataegus, one of the most interesting genera of the Rosaceae family. This review is the first to consider, all together, the pharmaceutical, phytochemical, functional and therapeutic properties of C. monogyna based on numerous valuable secondary metabolites, including flavonoids, vitamin C, glycoside, anthocyanin, saponin, tannin and antioxidants. Previous reviews dealt with the properties of all species of the entire genera. We highlight the multi-therapeutic role that C. monogyna extracts could have in the treatment of different chronic and degenerative diseases, mainly focusing on flavonoids. In the first part of this comprehensive review, we describe the main botanical characteristics and summarize the studies which have been performed on the morphological and genetic characterization of the C. monogyna germplasm. In the second part, the key metabolites and their nutritional and pharmaceutical properties are described. This work could be an essential resource for promoting future therapeutic formulations based on this natural and potent bioactive plant extract.
- Published
- 2021
22. Influence of the choice of cultivar and soil fertilization on PTE concentrations in Lactuca sativa L. in the framework of the regenerative agriculture revolution
- Author
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Angela Cicatelli, Alessandro Bellino, Daniela Baldantoni, and Stefano Castiglione
- Subjects
Lactuca ,Relative weight ,engineering.material ,Nutrient ,Human fertilization ,Cultivar ,Lettuce cultivars ,Non-essential elements ,Nutrients ,Mineral fertilization ,Biowaste compost amendment ,Leaf and root concentrations ,Circular agriculture ,Sustainable agriculture ,Nature and Landscape Conservation ,Global and Planetary Change ,Regenerative agriculture ,Ecology ,biology ,Chemistry ,Compost ,Agriculture ,biology.organism_classification ,Horticulture ,Soil water ,engineering - Abstract
Evaluating the relative weight of the choice of cultivar and soil fertilization on potentially toxic elements (PTEs) accumulation is crucial in promoting informed decisions in the framework of regenerative agriculture. To this end, 11 PTEs (Cd, Cr, Cu, Fe, K, Mg, Mn, Na, Ni, Pb, Zn) were determined in both leaves and roots of six cultivars (Stylist, Xanadu, Aljeva, Bacio, Analena, Vincenzo) of lettuce (Lactuca sativa L.) grown side by side on mineral fertilized or biowaste compost amended soils, under greenhouse conditions. The use of multivariate and linear modelling approaches indicated that the organ and cultivar primarily account for the variability in PTE concentrations. In terms of PTE partitioning between organs, Cd and Mg were preferentially accumulated in leaves, whereas Cu, Pb, K and Zn in roots. As for the cultivar, Xanadu showed the highest concentrations of several PTEs, with Cd reaching concerning levels. Fertilization had a detectable contribution only on Cd accumulation, slightly increased in leaves by compost. Findings highlight the key role of cultivar choice in guaranteeing food safety and grant the possibility to adopt biowaste compost in regenerative agriculture without concerns about PTE accumulation enhancements in lettuce, but demand a cautionary approach in the case of Cd.
- Published
- 2021
23. Epigenetic Analysis through MSAP-NGS Coupled Technology: The Case Study of White Poplar Monoclonal Populations/Stands
- Author
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Angela Cicatelli, Stefano Castiglione, Francesco Guarino, and Berthold Heinze
- Subjects
Epigenomics ,0106 biological sciences ,0301 basic medicine ,01 natural sciences ,Genome ,Epigenesis, Genetic ,lcsh:Chemistry ,chemistry.chemical_compound ,Cluster Analysis ,lcsh:QH301-705.5 ,Spectroscopy ,Genetics ,biology ,musculoskeletal, neural, and ocular physiology ,High-Throughput Nucleotide Sequencing ,MSAP ,General Medicine ,Methylation ,Phenotype ,Computer Science Applications ,Populus ,poplar ,NGS ,DNA methylation ,Nucleic Acid Amplification Techniques ,epigenetic ,Genotype ,macromolecular substances ,White poplar ,Article ,Catalysis ,Inorganic Chemistry ,03 medical and health sciences ,Epigenetic ,Poplar ,Epigenetics ,Physical and Theoretical Chemistry ,Molecular Biology ,Gene ,Polymorphism, Genetic ,Organic Chemistry ,Computational Biology ,DNA Methylation ,biology.organism_classification ,030104 developmental biology ,nervous system ,chemistry ,lcsh:Biology (General) ,lcsh:QD1-999 ,methylation ,DNA ,010606 plant biology & botany - Abstract
Over the last several decades, several lines of evidence have shown that epigenetic modifications modulate phenotype and mediate an organism&rsquo, s response to environmental stimuli. Plant DNA is normally highly methylated, although notable differences exist between species. Many biomolecular techniques based on PCR have been developed to analyse DNA methylation status, however a qualitative leap was made with the advent of next-generation sequencing (NGS). In the case of large, repetitive, or not-yet-sequenced genomes characterised by a high level of DNA methylation, the NGS analysis of bisulphite pre-treated DNA is expensive and time consuming, and moreover, in some cases data analysis is a major challenge. Methylation-sensitive amplification polymorphism (MSAP) analysis is a highly effective method to study DNA methylation. The method is based on the comparison of double DNA digestion profiles (EcoRI-HpaII and EcoRI-MspI) to reveal methylation pattern variations. These are often attributable to pedoclimatic and stress conditions which affect all organisms during their lifetime. In our study, five white poplar (Populus alba L.) specimens were collected from different monoclonal stands in the Maltese archipelago, and their DNA was processed by means of an innovative approach where MSAP analysis was followed by NGS. This allowed us to identify genes that were differentially methylated among the different specimens and link them to specific biochemical pathways. Many differentially methylated genes were found to encode transfer RNAs (tRNAs) related to photosynthesis or light reaction pathways. Our results clearly demonstrate that this combinatorial method is suitable for epigenetic studies of unsequenced genomes like P. alba (at the time of study), and to identify epigenetic variations related to stress, probably caused by different and changing pedoclimatic conditions, to which the poplar stands have been exposed.
- Published
- 2020
24. Arsenic phytovolatilization and epigenetic modifications in Arundo donax L. assisted by a PGPR consortium
- Author
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Antonio Miranda, Angela Cicatelli, Francesco Guarino, and Stefano Castiglione
- Subjects
Arsenic contamination ,Arsenic volatilization ,Arundo donax ,DNA methylation ,Phytoremediation ,Plant growth promoting bacteria ,Environmental Engineering ,Agrobacterium ,Health, Toxicology and Mutagenesis ,0208 environmental biotechnology ,02 engineering and technology ,010501 environmental sciences ,Biology ,Poaceae ,01 natural sciences ,Arsenic ,Epigenesis, Genetic ,Environmental Chemistry ,Biomass ,0105 earth and related environmental sciences ,Transpiration ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,Arundo ,biology.organism_classification ,Pollution ,020801 environmental engineering ,Plant Leaves ,Horticulture ,Stenotrophomonas maltophilia ,Biodegradation, Environmental ,Toxicity ,Bacteria - Abstract
Arsenic-(As) pollution is an increasing threat across the globe and it is reaching harmful values in several areas of the world. In this perspective, we assayed bio-phyto-remediation technology using Arundo donax L., assisted by Plant Growth Promoting Bacteria (PGPB) consortium (BC) constituted of two strains of Stenotrophomonas maltophilia sp. and one of Agrobacterium sp.; furthermore, we assayed the epigenetic response to As pollution. The three bacterial strains initially evaluated for their As tolerance, revealed different resistance to both forms of As[As(III) and As(V)] however at concentration greater than those foreseen in the phytoremediation experiment (2.0, 10.0, 20.0 mgL−1 of NaAsO2). At the end of the trial plant biomass and As concentration were measured. Plants did not show any visible signs of toxicity, rather the leaf and stem biomass slightly increased in the presence of As and/or PGPBs; moreover, although the Bioaccumulation Factor was double in the presence of BC, the absolute values of As accumulation in the Arundo plants were very low, both in the presence or absence of BC and only detectable in the presence of the highest As dose (20 mgL−1 As). In this case, regardless the presence of PGPB, ≈25% of As remained in the sand and ≈0.15% was accumulated in the plant, whilst the remaining 75% was volatilized by transpiration. Finally, the methylation sensitive amplified polymorphisms (MSAP) of leaves were analyzed in order to investigate their epigenetic response to As and/or BC. Our results suggest that epigenetic modifications are involved in stress response and As detoxification.
- Published
- 2020
25. Effects of Zinc Pollution and Compost Amendment on the Root Microbiome of a Metal Tolerant Poplar Clone
- Author
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Angela Cicatelli, Maria Triassi, Francesco Guarino, Stefano Castiglione, Giovanni Improta, Guarino, Francesco, Improta, Giovanni, Triassi, Maria, Cicatelli, Angela, and Castiglione, Stefano
- Subjects
Pollution ,Microbiology (medical) ,compost ,media_common.quotation_subject ,Amendment ,lcsh:QR1-502 ,metals ,microbiome ,phytoremediation ,engineering.material ,Black poplar ,complex mixtures ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,Microbiome ,bacteria ,030304 developmental biology ,media_common ,Original Research ,0303 health sciences ,Rhizosphere ,biology ,030306 microbiology ,Compost ,fungi ,Root microbiome ,food and beverages ,biology.organism_classification ,Phytoremediation ,Agronomy ,NGS ,engineering - Abstract
Until recently, many phytoremediation studies were focused solely on a plants ability to reclaim heavy metal (HM) polluted soil through a range of different processes, such as phytoextraction and phytostabilization. However, the interaction between plants and their own rhizosphere microbiome represents a new research frontier for phytoremediation. Our hypothesis is that rhizomicrobiome might play a key role in plant wellness and in the response to external stimuli; therefore, this study aimed to shed light the rhizomicrobiome dynamics after an organic amendment (e.g., compost) and/or HM pollution (e.g., Zn), and its relation with plant reclamation ability. To reach this goal we set up a greenhouse experiment cultivating in pot an elite black poplar clone (N12) selected in the past for its excellent ability to reclaim heavy metals. N12 saplings were grown on a soil amended with compost and/or spiked with high Zn doses. At the end of the experiment, we observed that the compost amendment strongly increased the foliar size but did not affect significantly the Zn accumulation in plant. Furthermore, the rhizomicrobiome communities (bacteria and fungi), investigated through NGS, highlighted how α diversity increased in all treatments compared to the untreated N12 saplings. Soil compost amendment, as well as Zn pollution, strongly modified the bacterial rhizomicrobiome structure. Conversely, the variation of the fungal rhizomicrobiome was only marginally affected by soil Zn addition, and only partially impaired by compost. Nevertheless, substantial alterations of the fungal community were due to both compost and Zn. Together, our experimental results revealed that organic amendment increased the bacterial resistance to external stimuli whilst, in the case of fungi, the amendment made the fungi microbiome more susceptible. Finally, the greater microbiome biodiversity does not imply, in this case, a better plant wellness or phytoremediation ability, although the microbiome plays a role in the external stimuli response supporting plant life.
- Published
- 2020
26. Genetic characterization, micropropagation, and potential use for arsenic phytoremediation of Dittrichia viscosa (L.) Greuter
- Author
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Barbara Conte, Angela Cicatelli, Rosaria Sciarrillo, Francesco Guarino, Stefano Castiglione, Giovanni Improta, Carmine Guarino, Guarino, Francesco, Conte, Barbara, Improta, Giovanni, Sciarrillo, Rosaria, Castiglione, Stefano, Cicatelli, Angela, and Guarino, Carmine
- Subjects
0106 biological sciences ,Health, Toxicology and Mutagenesis ,Population ,Asteraceae ,010501 environmental sciences ,01 natural sciences ,Acclimatization ,Arsenic ,Genetic study ,Soil ,Botany ,Dittrichia viscosa ,Soil Pollutants ,Toxicology and Mutagenesis ,education ,0105 earth and related environmental sciences ,Arsenic pollution ,education.field_of_study ,biology ,Environmental and Occupational Health ,Phytotechnology ,Public Health, Environmental and Occupational Health ,In vitro culture ,General Medicine ,biology.organism_classification ,Pollution ,Random Amplified Polymorphic DNA Technique ,RAPD ,Plant Leaves ,Phytoremediation ,Biodegradation, Environmental ,Italy ,Micropropagation ,Seedlings ,Health ,Seedling ,Seeds ,Public Health ,010606 plant biology & botany - Abstract
In the last decade, many scientists have focused their attention on the search for new plant species that can offer improved capacities to reclaim polluted soils and waters via phytoremediation. In this study, seed batches from three natural populations of Dittrichia viscosa, harvested in rural, urban, and industrial areas of central and southern Italy, were used to: (i) evaluate the genetic and morphological diversity of the populations; (ii) develop an efficient protocol for in-vitro propagation from seedling microcuttings; (iii) achieve optimal acclimatization of micropropagated plants to greenhouse conditions; (iv) test the response to arsenic (As) soil contamination of micropropagated plants. The genetic biodiversity study, based on Random Amplification of Polymorphic DNA (RAPD), as well as the morphometric analysis of 20 seedlings from each population revealed some degree of differentiation among populations. Based on these data, the most biodiverse plants from the three populations (10 lines each) were clonally multiplied by micropropagation using microcuttings of in-vitro grown seedlings. Three culture media were tested and Mureshige and Skoog medium was chosen for both seedling growth and micropropagation. The micropropagated plants responded well to greenhouse conditions and over 95% survived the acclimatization phase. Four clones were tested for their capacity to grow on soil spiked with NaAsO2 and to absorb and accumulate the metalloid. All clones tolerated up to 1.0 mg As. At the end of the trial (five weeks), As was detectable only in leaves of As-treated plants and concentration varied significantly among clones. The amount of As present in plants (leaves) corresponded to ca. 0.10–1.7% of the amount supplied. However, As was no longer detectable in soil suggesting that the metalloid was taken up, translocated and probably phytovolatilized.
- Published
- 2018
27. Reclamation of Cr-contaminated or Cu-contaminated agricultural soils using sunflower and chelants
- Author
-
Stefano Castiglione, Francesco Guarino, and Angela Cicatelli
- Subjects
Chromium ,Pollution ,EDDS ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,010501 environmental sciences ,01 natural sciences ,Soil ,chemistry.chemical_compound ,Soil Pollutants ,Environmental Chemistry ,Toxicology and Mutagenesis ,0105 earth and related environmental sciences ,media_common ,EDTA ,Environmental engineering ,Soil classification ,04 agricultural and veterinary sciences ,General Medicine ,Soil contamination ,Phytoremediation ,Bioavailability ,Biodegradation, Environmental ,Copper ,chemistry ,Health ,Environmental chemistry ,Soil water ,040103 agronomy & agriculture ,Helianthus ,0401 agriculture, forestry, and fisheries ,Environmental science - Abstract
Chromium (Cr) and copper (Cu) are pollutants with a strong environmental impact. "Green biotechnology" as phytoremediation represents a sustainability opportunity for soil reclamation. In this study, we evaluated the possibility to reclaim agricultural soils located in the Solofrana valley, contaminated by Cr or Cu. Chromium contamination derives by repeated flooding events of Solofrana rivers containing Cr because of leather tanning plants, while Cu soil pollution was due to the use of Cu-rich pesticides in agriculture. Both metals showed a very low bioavailability. In order to perform an assisted phytoremediation of polluted fields, we carried out a preliminary ex situ experimentation testing for the first time sunflowers (cv. Pretor) and chelants (ethylenediaminetetraacetic acid (EDTA) and/or ethylene diamine disuccinate (EDDS)), useful when metal bioavailability is low. No symptoms of toxicity were observed in sunflowers grown on both soils, while biomass was improved when EDDS was added. Cr and Cu bioavailability was only slightly enhanced by chelants at the end of the treatments. Both Cr and Cu were mainly accumulated in the roots; moreover, Cu was also translocated to the aboveground organs in the presence of EDTA. The ex situ experimentation demonstrated that assisted phytoremediation is a very slow process not useful in the case of persistent pollution.
- Published
- 2017
28. Heavy metal tolerance of orchid populations growing on abandoned mine tailings: A case study in Sardinia Island (Italy)
- Author
-
Angela Cicatelli, Pierluigi Cortis, Andrea Vacca, Michele Lussu, Alberto Caredda, Cinzia Sanna, Domenica Farci, Claudia Caltagirone, Nicola Tommasi, Antonio De Agostini, Dario Piano, Francesco Guarino, Alessandra Garau, Massimo Labra, Annalena Cogoni, De Agostini, A, Caltagirone, C, Caredda, A, Cicatelli, A, Cogoni, A, Farci, D, Guarino, F, Garau, A, Labra, M, Lussu, M, Piano, D, Sanna, C, Tommasi, N, Vacca, A, and Cortis, P
- Subjects
Epipactis ,Heavy metals ,Mycorrhiza ,Orchids ,Soil pollution ,Ascomycota ,Biodegradation, Environmental ,Islands ,Italy ,Metals, Heavy ,Mining ,Orchidaceae ,Plant Roots ,Soil ,Soil Pollutants ,Health, Toxicology and Mutagenesis ,Population ,0211 other engineering and technologies ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Island ,Environmental ,Bioremediation ,Botany ,Orchid ,education ,0105 earth and related environmental sciences ,021110 strategic, defence & security studies ,education.field_of_study ,biology ,Epipactis helleborine ,Public Health, Environmental and Occupational Health ,Plant Root ,General Medicine ,Heavy ,biology.organism_classification ,Pollution ,Tailings ,Soil contamination ,Epipacti ,Heavy metal ,Metals ,Bioaccumulation ,Biodegradation - Abstract
Understanding how environmental pollutants influence plant occurrence, growth, and development is key for effective management plans and potential bioremediation. Rare plants, such as orchids, may occur in modified habitats and on soils containing heavy metals, yet their ecological and physiological responses to heavy metals is poorly understood. We investigated the influence of heavy metal pollution on orchid growth rates and interactions with soil fungal mutualists by comparing a large population of the orchid Epipactis helleborine (L.) Crantz subsp. tremolsii (Pau) E. Klein that grows on mine tailings in south-west Sardinia (Italy) with a population that grows on non-contaminated soils in central Sardinia. Soils of the contaminated site had high levels of heavy metals and low organic matter and nutritive elements content. We performed a morphological analysis on twenty individuals that have been subjected to measurement of bioaccumulation and translocation of heavy metals. Fungi associated with the roots of plants from the contaminated and uncontaminated site were grown and identified by DNA barcoding approach. Plants from the contaminated site were smaller than the ones growing in the uncontaminated site and were found to be able to tolerate heavy metals from the soil and to accumulate and translocate them into their organs. Fungi belonging to the genus Ilyonectria (Ascomycota) were found both in contaminated and uncontaminated sites, while an unidentified fungus was isolated from roots in the contaminated site only. These results are discussed in terms of orchids’ tolerance to heavy metals and its physiological and ecological mechanisms. The role of contaminated habitats in harbouring orchids and peculiar taxa is also discussed.
- Published
- 2019
29. Editorial: Effects of Plant-Microbiome Interactions on Phyto- and Bio-Remediation Capacity
- Author
-
Stefano Castiglione, Angela Cicatelli, Piotr Rozpadek, and Nuria Ferrol
- Subjects
Interaction ,constructed wetlands ,interaction ,mycorrhiza ,endophytes ,Plant Science ,lcsh:Plant culture ,010501 environmental sciences ,Biology ,01 natural sciences ,Endophyte ,Bio-remediation ,Constructed wetlands ,Endophytes ,Mycorrhiza ,NGS ,PGPR ,Bioremediation ,bio-remediation ,Botany ,lcsh:SB1-1110 ,Hyperaccumulator ,0105 earth and related environmental sciences ,Rhizosphere ,Pioneer species ,fungi ,food and beverages ,04 agricultural and veterinary sciences ,Endophytes, mycorrhiza, NGS ,biology.organism_classification ,Phytoremediation ,Editorial ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Soil Pollutants - Abstract
descripción no proporcionada por scopus
- Published
- 2019
30. Tall-statured grasses: a useful functional group for invasion science
- Author
-
Wen-Yong Guo, Mark van Kleunen, Petr Pyšek, Angela Cicatelli, Holger Kreft, Marten Winter, Jasmin G. Packer, Franz Essl, Susan Canavan, John R. U. Wilson, Robert J. Soreng, Jan Čuda, Patrick Weigelt, Kim Canavan, Noëlie Maurel, Maria S. Vorontsova, Vernon Visser, Carla Lambertini, David M. Richardson, Vanessa Lozano, Wayne Dawson, Francesco Guarino, Jan Pergl, Giuseppe Brundu, Laura A. Meyerson, Hana Skálová, Canavan, Susan, Meyerson, Laura A., Packer, Jasmin G., Pyšek, Petr, Maurel, Noëlie, Lozano, Vanessa, Richardson, David M., Brundu, Giuseppe, Canavan, Kim, Cicatelli, Angela, Čuda, Jan, Dawson, Wayne, Essl, Franz, Guarino, Francesco, Guo, Wen-Yong, van Kleunen, Mark, Kreft, Holger, Lambertini, Carla, Pergl, Jan, Skálová, Hana, Soreng, Robert J., Visser, Vernon, Vorontsova, Maria S., Weigelt, Patrick, Winter, Marten, and Wilson, John R. U.
- Subjects
0106 biological sciences ,Arundo ,Evolution ,Naturalisation ,Miscanthus ,Biology ,Poaceae ,010603 evolutionary biology ,01 natural sciences ,Invasive species ,Phragmites ,Behavior and Systematics ,Arundo, Bamboos, Biological invasions, Height, Invasive species, Miscanthus, Phragmites, Plant functional groups, Poaceae, Risk assessment ,ddc:570 ,Bamboos ,Plant functional groups ,Ecosystem ,Biological invasions ,Bamboo ,Ecology, Evolution, Behavior and Systematics ,Phragmite ,Risk assessment ,Biomass (ecology) ,Ecology ,Height ,010604 marine biology & hydrobiology ,Invasive specie ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematic ,Miscanthu ,Biological invasion ,Plant functional group - Abstract
Species in the grass family (Poaceae) have caused some of the most damaging invasions in natural ecosystems, but plants in this family are also among the most widely used by humans. Therefore, it is important to be able to predict their likelihood of naturalisation and impact. We explore whether plant height is of particular importance in determining naturalisation success and impact in Poaceae by comparing naturalisation of tall-statured grasses (TSGs; defined as grass species that maintain a self-supporting height of 2 m or greater) to non-TSGs using the Global Naturalised Alien Flora database. We review the competitive traits of TSGs and collate risk assessments conducted on TSGs. Of the c. 11,000 grass species globally, 929 qualify (c. 8.6%) as TSGs. 80.6% of TSGs are woody bamboos, with the remaining species scattered among 21 tribes in seven subfamilies. When all grass species were analysed, TSGs and non-TSGs did not differ significantly in the probability of naturalisation. However, when we analysed woody bamboos separately from the other grasses, the percentage of TSGs that have naturalised was 2–4 times greater than that of non-TSGs for both bamboos and non-bamboo groups. Our analyses suggest that woody bamboos should be analysed separately from other TSGs when considering naturalisation; within the ≥ 2 m height class they do not naturalise at the same rate as other TSGs. Rapid growth rate and the capacity to accumulate biomass (a function of height) give many TSGs a competitive advantage and allow them to form monospecific stands, accumulate dense and deep litter mats, reduce light availability at ground level, and alter fire and nutrient-cycling regimes, thereby driving rapid ecosystem transformation. While the height distribution in grasses is continuous (i.e. no obvious break is evident in heights), the 2 m designation for TSGs defines an important functional group in grasses that can improve predictive modelling for management and biosecurity.
- Published
- 2019
31. Effects of Plant-Microbiome Interactions on Phyto- and Bio-Remediation Capacity
- Author
-
Stefano Castiglione, Piotr Rozpadek, Angela Cicatelli, and Nuria Ferrol
- Subjects
Bioremediation ,business.industry ,Environmental science ,Microbiome ,business ,Biotechnology - Published
- 2019
32. Effects of Compost Amendment on Glycophyte and Halophyte Crops Grown on Saline Soils: Isolation and Characterization of Rhizobacteria with Plant Growth Promoting Features and High Salt Resistance
- Author
-
Elisa Gamalero, Guido Lingua, Gianmaria Oliva, Angela Cicatelli, Francesco Guarino, Giorgia Novello, Giovanni Vigliotta, and Stefano Castiglione
- Subjects
0106 biological sciences ,halo/thermo-tolerance ,Soil salinity ,Amendment ,Biomass ,010501 environmental sciences ,engineering.material ,Rhizobacteria ,lcsh:Technology ,01 natural sciences ,lcsh:Chemistry ,Halophyte ,General Materials Science ,Halo/thermo-tolerance ,Organic amendment ,Salt stress tolerance ,Sustainable agriculture ,salt stress tolerance ,organic amendment ,lcsh:QH301-705.5 ,Instrumentation ,0105 earth and related environmental sciences ,Fluid Flow and Transfer Processes ,Rhizosphere ,lcsh:T ,Compost ,Process Chemistry and Technology ,General Engineering ,lcsh:QC1-999 ,Computer Science Applications ,sustainable agriculture ,lcsh:Biology (General) ,lcsh:QD1-999 ,Agronomy ,lcsh:TA1-2040 ,Soil water ,engineering ,Environmental science ,lcsh:Engineering (General). Civil engineering (General) ,lcsh:Physics ,010606 plant biology & botany - Abstract
Soil salinization and desertification due to climate change are the most relevant challenges for the agriculture of the 21st century. Soil compost amendment and plant growth promoting rhizobacteria (PGP-R) are valuable tools to mitigate salinization and desertification impacts on agricultural soils. Selection of novel halo/thermo-tolerant bacteria from the rhizosphere of glicophytes and halophytes, grown on soil compost amended and watered with 150/300 mM NaCl, was the main objective of our study. Beneficial effects on the biomass, well-being and resilience, exerted on the assayed crops (maize, tomato, sunflower and quinoa), were clearly observable when soils were amended with 20% compost despite the very high soil electric conductivity (EC). Soil compost amendment not only was able to increase crop growth and biomass, but also their resilience to the stress caused by very high soil EC (up to 20 dS m−1). Moreover, compost amendment has proved itself a valuable source of highly halo-(4.0 M NaCl)/thermo tolerant rhizobacteria (55 °C), showing typical PGP features. Among the 13 rhizobacterial isolates, molecularly and biochemically characterized, two bacterial strains showed several biochemical PGP features. The use of compost is growing all around the world reducing considerably for farmers soil fertilization costs. In fact, only in Italy its utilization has ensured, in the last years, a saving of 650 million euro for the farmers, without taking into account the environment and human health benefits. Furthermore, the isolation of halo/thermo-tolerant PGPR strains and their use will allow the recovery and cultivation of hundreds of thousands of hectares of saline and arid soils now unproductive, making agriculture more respectful of agro-ecosystems also in view of upcoming climate change.
- Published
- 2021
33. Effects of heavy metals and chelants on phytoremediation capacity and on rhizobacterial communities of maize
- Author
-
Angela Cicatelli, Simona Matrella, Giovanni Vigliotta, Francesco Guarino, and Stefano Castiglione
- Subjects
Chelants ,Water reclamation ,Environmental Engineering ,Monitoring ,Microbial Consortia ,Combined use ,Biodiversity ,Bacillus ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,Biology ,Rhizosphere bacterial community ,Zea mays ,01 natural sciences ,Metals, Heavy ,Soil Pollutants ,Tissue Distribution ,Waste Management and Disposal ,Edetic Acid ,Soil Microbiology ,Chelating Agents ,0105 earth and related environmental sciences ,Rhizosphere ,Policy and Law ,Bacteria ,fungi ,Pseudomonas ,food and beverages ,Succinates ,Heavy metals ,04 agricultural and veterinary sciences ,General Medicine ,Ethylenediamines ,biology.organism_classification ,Phytoremediation ,Zea mays L ,Management ,Zinc ,Biodegradation, Environmental ,Agronomy ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Copper - Abstract
Heavy metals (HMs) are one of the major ecological problem related to human activities. Phytoremediation is a promising "green technology" for soil and water reclamation, and it can be improved by means of the use of chelants. In the past particular attention was paid on the effects of HMs and/or chelants on plant health, but much less on their effects on rhizosphere communities. To shed light on the interaction among plant-HM-chelant-rhizobacterial community a pot experiment was set up. Maize plants were grown on uncontaminated, multi-metal (copper and zinc) contaminated and chelants artificially amended soils. A high concentration of HMs was detected in the different maize organs; chelants improved the accumulation capacity of the maize plants. The rhizosphere bacterial community isolated from control plants showed the largest biodiversity in terms of bacterial genera. However, the addition of HMs reduced the number of taxa to three: Bacillus, Lysinibacillus and Pseudomonas. The effects of HM treatment were counteracted by the addition of chelants in terms of the genetic biodiversity. Furthermore, several bacterial strains particularly resistant to HMs and chelants were isolated and selected. Our study suggests that the combined use of resistant bacteria and chelants could improve the phytoremediation capacity of maize.
- Published
- 2016
34. A step forward in tree physiological research on soil copper contamination
- Author
-
Angela Cicatelli and Stefano Castiglione
- Subjects
0106 biological sciences ,Physiology ,Agroforestry ,Environmental pollution ,04 agricultural and veterinary sciences ,Plant Science ,01 natural sciences ,Trees ,Soil ,Tree (data structure) ,Plant science ,Agronomy ,040103 agronomy & agriculture ,Soil Pollutants ,0401 agriculture, forestry, and fisheries ,Environmental science ,Environmental Pollution ,Copper contamination ,Copper ,010606 plant biology & botany - Published
- 2016
35. The combined effect of Cr(III) and NaCl determines changes in metal uptake, nutrient content, and gene expression in quinoa (Chenopodium quinoa Willd.)
- Author
-
Karina B. Ruiz, Stefania Biondi, Angela Cicatelli, Stefano Castiglione, Francesco Guarino, Guarino F., Ruiz K.B., Castiglione S., Cicatelli A., and Biondi S.
- Subjects
Chromium ,Salinity ,Soil salinity ,Proline ,Osmotic shock ,Iron ,Health, Toxicology and Mutagenesis ,Halophyte ,0211 other engineering and technologies ,Gene Expression ,Tocopherols ,chemistry.chemical_element ,02 engineering and technology ,Sodium Chloride ,010501 environmental sciences ,Plant Roots ,01 natural sciences ,Chenopodium quinoa ,Stress, Physiological ,Soil Pollutants ,0105 earth and related environmental sciences ,Ions ,Stress-responsive genes ,021110 strategic, defence & security studies ,Chemistry ,Phosphorus ,Sodium ,Public Health, Environmental and Occupational Health ,Biological Transport ,Salt-Tolerant Plants ,General Medicine ,Pollution ,Phytoremediation ,Plant Leaves ,Horticulture ,Biodegradation, Environmental ,Lead ,Quinoa ,Phytochelatin ,Sulfur - Abstract
Many areas of the world are affected simultaneously by salinity and heavy metal pollution. Halophytes are considered as useful candidates in remediation of such soils due to their ability to withstand both osmotic stress and ion toxicity deriving from high salt concentrations. Quinoa (Chenopodium quinoa Willd) is a halophyte with a high resistance to abiotic stresses (drought, salinity, frost), but its capacity to cope with heavy metals has not yet been fully investigated. In this pot experiment, we investigated phytoextraction capacity, effects on nutrient levels (P and Fe), and changes in gene expression in response to application of Cr(III) in quinoa plants grown on saline or non-saline soil. Plants were exposed for three weeks to 500 mg kg−1 soil of Cr(NO3)3·9H2O either in the presence or absence of 150 mM NaCl. Results show that plants were able tolerate this soil concentration of Cr(III); the metal was mainly accumulated in roots where it reached the highest concentration (ca. 2.6 mg g−1 DW) in the presence of NaCl. On saline soil, foliar Na concentration was significantly reduced by Cr(III). Phosphorus translocation to leaves was reduced in the presence of Cr(III), while Fe accumulation was enhanced by treatment with NaCl alone. A real-time RT-qPCR analysis was conducted on genes encoding for sulfate, iron, and phosphate transporters, a phytochelatin, a metallothionein, glutathione synthetase, a dehydrin, Hsp70, and enzymes responsible for the biosynthesis of proline (P5CS), glycine betaine (BADH), tocopherols (TAT), and phenolic compounds (PAL). Cr(III), and especially Cr(III)+NaCl, affected transcript levels of most of the investigated genes, indicating that tolerance to Cr is associated with changes in phosphorus and sulfur allocation, and activation of stress-protective molecules. Moderately saline conditions, in most cases, enhanced this response, suggesting that the halophytism of quinoa could contribute to prime the plants to respond to chromium stress.
- Published
- 2020
36. Variability in DNA Methylation and Generational Plasticity in the Lombardy Poplar, a Single Genotype Worldwide Distributed Since the Eighteenth Century
- Author
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Rein Brys, Marijke Steenackers, Francesco Guarino, An Vanden Broeck, Angela Cicatelli, Kristine Vander Mijnsbrugge, Karen Cox, Berthold Heinze, and Stefano Castiglione
- Subjects
0106 biological sciences ,0301 basic medicine ,phenotyping ,vegetative propagation ,Climate ,Growing season ,Plant Science ,lcsh:Plant culture ,Biology ,epigenetic variation ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Climate policy (inc. Biomass energy with carbon capture and storage) ,epigenetica ,bud phenology ,Genetic variation ,lcsh:SB1-1110 ,Epigenetics ,B004-botany ,Original Research ,Lombardy poplar ,Phenotypic plasticity ,Genetic diversity ,transgenerational plasticity ,DNA methylation ,Ecotype ,Phenology ,genetic technologies ,DNA-methylatie ,Europe ,030104 developmental biology ,Evolutionary biology ,ecological epigenetics ,Adaptation ,Populus nigra ,poplar (Populus spp.) - Abstract
In the absence of genetic diversity, plants rely on the capacity of phenotypic plasticity to cope with shifts in environmental conditions. Understanding the mechanisms behind phenotypic plasticity and how local phenotypic adjustments are transferred to clonal offspring, will provide insight into its ecological and evolutionary significance. Epigenetic changes have recently been proposed to play a crucial role in rapid environmental adaptation. While the contribution of epigenetic changes to phenotypic plasticity has been extensively studied in sexual reproducing model organisms, little work has been done on vegetative generations of asexual reproducing plant species. We studied the variability of DNA methylation and bud set phenology of the Lombardy poplar (Populus nigra cv. Italica Duroi), a cultivated tree representing a single genotype worldwide distributed since the eighteenth century. Bud set observations and CpG methyl polymorphisms were studied on vegetative offspring resulting from cuttings grown for one season in a common glasshouse environment. The cuttings were collected from 60 adult Lombardy poplars growing in different environments. The physiological condition of the cuttings was determined by measuring weight and nutrient condition. Methylation sensitive amplified polymorphisms were used to obtain global patterns of DNA methylation. Using logistic regression models, we investigated correlations among epigenotype, bud phenology, and the climate at the home site of the donor trees, while accounting for physiological effects. We found significant epigenetic variation as well as significant variation in bud phenology, in the absence of genetic variation. Remarkably, phenology of bud set observed at the end of the growing season in the common environment was significantly correlated with climate variables at the home site of the mother trees, specifically the average temperature of January and monthly potential evapotranspiration. Although we could not directly detect significant effects of epigenetic variation on phenology, our results suggest that, in the Lombardy poplar, epigenetic marks contribute to the variation of phenotypic response that can be transferred onto asexually reproduced offspring resulting in locally adapted ecotypes. This contributes to the growing evidence that epigenetic-based transgenerational inheritance might be relevant for adaptation and evolution in contrasting or rapidly changing environments.
- Published
- 2018
37. In vitro propagation of Leucocroton havanensis Borhidi (Euphorbiaceae): A rare serpentine-endemic species of Cuba
- Author
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Angela Cicatelli, Stefano Castiglione, Francesco Guarino, Dubiel Alfonso, and Daymara Rodríguez
- Subjects
0106 biological sciences ,Ni hyperaccumulation ,AFLP ,Evolution ,Plant Science ,010501 environmental sciences ,01 natural sciences ,Somaclonal variation ,Behavior and Systematics ,Axillary bud ,Botany ,in vitro propagation ,Endemism ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,biology ,Ecology ,Euphorbiaceae ,biology.organism_classification ,In vitro ,somaclonal variation ,Leucocroton havanensis ,Micropropagation ,010606 plant biology & botany ,Explant culture - Abstract
Leucocroton havanensis Borhidi is an endemic plant species of Cuba able to hyperaccumulate nickel. In order to sustain the conservation of this species, an efficient protocol for its micropropagation, via axillary bud proliferation, is described. We placed apical segments from aseptic seedlings on basal medium supplemented with indole-3-acetic acid (IAA) and 6-benzylaminopurine (BAP) or thidiazuron (TDZ), individually or in combination. On a medium containing 0.5 mg L−1 IAA and 1.0 mg L−1 BAP explants (65.5%) developed axillary buds. Nevertheless, combinations of 0.5 mg L−1 IAA with 0.1 mg L−1 TDZ was the most effective treatment producing the highest number of buds per explant (30.3); while the control treatment, without growth regulators, produced no buds at all. Transfer of buds to medium supplemented with indole-3-butyric acid, indicated that 0.25 mg L−1 is the amount of hormone required to generate roots on young buds (100%). In order to assess DNA variations in micropropagated plants, an Amp...
- Published
- 2018
38. β-lactams resistance gene quantification in an antibiotic resistant Escherichia coli water suspension treated by advanced oxidation with UV/H2O2
- Author
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Francesco Guarino, Angela Cicatelli, Giovanna Ferro, and Luigi Rizzo
- Subjects
Environmental Engineering ,Antibiotic resistance ,Health, Toxicology and Mutagenesis ,0208 environmental biotechnology ,02 engineering and technology ,010501 environmental sciences ,Biology ,β- lactams resistance gene ,medicine.disease_cause ,01 natural sciences ,law.invention ,Microbiology ,chemistry.chemical_compound ,law ,β lactams ,medicine ,Environmental Chemistry ,Toxicology and Mutagenesis ,DNA ,Water disinfection ,Pollution ,Waste Management and Disposal ,Gene ,Escherichia coli ,Polymerase chain reaction ,0105 earth and related environmental sciences ,Detection limit ,020801 environmental engineering ,chemistry ,Cell culture ,Health - Abstract
Water is one of the most important habitats and route for the spread of antibiotic resistance (AR) in the environment and disinfection processes can be a potential barrier to minimise this risk. In this study the effect of UV/H2O2 process on the potential of AR transfer was investigated through cultivation methods vs (polymerase chain reaction) PCR based methods. blaTEM was selected as target antibiotic resistance gene (ARG) and was quantified by qPCR in the survived colonies and the whole suspension (total DNA). The detection limit of residual antibiotic resistant Escherichia coli (E. coli) colonies (5CFUmL-1) was reached after 240min treatment, but blaTEM gene was still present in total DNA after 300min (2.8×106 copies mL-1), and no effect was observed in DNA extracted from cell cultures (3.8×108 copies mL-1 after 90min). Accordingly, the investigated disinfection process may select for unaffected ARGs, therefore contributing to the potential transfer of AR in the environment.
- Published
- 2017
39. Use of Zea mays L. in phytoremediation of trichloroethylene
- Author
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Stefano Castiglione, Adriano Intiso, Federico Rossi, Francesco Guarino, Patrizia Iannece, Angela Cicatelli, Antonio Proto, and Emanuele Moccia
- Subjects
Trichloroethylene ,Environmental remediation ,Health, Toxicology and Mutagenesis ,DNAPL ,Organic pollutants ,Phytoremediation ,Plants ,Remediation ,Zea mays L ,Environmental Chemistry ,Medicine (all) ,Pollution ,Health ,Toxicology and Mutagenesis ,0208 environmental biotechnology ,02 engineering and technology ,010501 environmental sciences ,Zea mays ,01 natural sciences ,chemistry.chemical_compound ,Bioreactor ,Soil Pollutants ,Ecotoxicology ,0105 earth and related environmental sciences ,Pollutant ,General Medicine ,Contamination ,020801 environmental engineering ,Biodegradation, Environmental ,chemistry ,Environmental chemistry ,Soil water - Abstract
Trichloroethylene (TCE) is a chlorinated aliphatic organic compound often detected as pollutant in soils and ground water. "Green technologies" based on phytoremediation were proven to be effective to reclaim organic pollutants (e.g. TCE) and heavy metals from different environmental matrices. In this work, we use Zea mays L. for the removal of high TCE concentrations from medium cultures. In particular, we investigated a sealed bioreactor where the growth medium was contaminated with an increasing amount of TCE, in the range 55-280 mg/L; the removal capability of the maize plants was assessed by means of GC-MS and LC-MS analyses. An accurate mass balance of the system revealed that the plants were able to remove and metabolise TCE with an efficiency up to 20 %, depending on the total amount of TCE delivered in the bioreactor. Morphometric data showed that the growth of Z. mays is not significantly affected by the presence of the pollutant up to a concentration of 280 mg/L, while plants show significant alterations at higher TCE concentrations until the growth is completely inhibited for [TCE] ≃ 2000 mg/L. Finally, the presence of several TCE metabolites, including dichloroacetic and trichloroacetic acids, was detected in the roots and in the aerial part of the plants, revealing that Z. mays follows the green liver metabolic model. These results encourage further studies for the employment of this plant species in phytoremediation processes of soils and waters contaminated by TCE and, potentially, by many other chlorinated solvents.
- Published
- 2017
40. Global networks for invasion science: benefits, challenges and guidelines
- Author
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David M. Richardson, Jasmin G. Packer, Francesco Guarino, Carla Lambertini, Xiao Guo, Ren Qing Wang, Franziska Eller, Jian Liu, Wen-Yong Guo, Susan Canavan, Laura A. Meyerson, James T. Cronin, Jan Čuda, Giuseppe Brundu, Hana Skálová, Vanessa Lozano, Petr Pyšek, Angela Cicatelli, Weihua Guo, Jose Luis Hierro, Warwick J. Allen, Hans Brix, Diego Villarreal, Stefano Castiglione, Thomas J. Mozdzer, Ganesh P. Bhattarai, Packer, Jasmin G., Meyerson, Laura A., Richardson, David M., Brundu, Giuseppe, Allen, Warwick J., Bhattarai, Ganesh P., Brix, Han, Canavan, Susan, Castiglione, Stefano, Cicatelli, Angela, Čuda, Jan, Cronin, James T., Eller, Franziska, Guarino, Francesco, Guo, Wei-Hua, Guo, Wen-Yong, Guo, Xiao, Hierro, José L., Lambertini, Carla, Liu, Jian, Lozano, Vanessa, Mozdzer, Thomas J., Skálová, Hana, Villarreal, Diego, Wang, Ren-Qing, and Pyšek, Petr
- Subjects
0106 biological sciences ,Evolution ,Ecology (disciplines) ,Biogeographic ,Biology ,010603 evolutionary biology ,01 natural sciences ,Behavior and Systematics ,Global research network ,Global network ,Biological invasions ,Resilience (network) ,Global change ,Ecology, Evolution, Behavior and Systematics ,Pace ,Multitrophic ,Data collection ,Resistance (ecology) ,Ecology ,business.industry ,010604 marine biology & hydrobiology ,Environmental resource management ,Collaboration ,Ecology, Evolution, Behavior and Systematic ,Scale (social sciences) ,business ,Biological invasion ,Transdisciplinary - Abstract
Much has been done to address the challenges of biological invasions, but fundamental questions (e.g., which species invade? Which habitats are invaded? How can invasions be effectively managed?) still need to be answered before the spread and impact of alien taxa can be effectively managed. Questions on the role of biogeography (e.g., how does biogeography influence ecosystem susceptibility, resistance and resilience against invasion?) have the greatest potential to address this goal by increasing our capacity to understand and accurately predict invasions at local, continental and global scales. This paper proposes a framework for the development of ‘Global Networks for Invasion Science’ to help generate approaches to address these critical and fundamentally biogeographic questions. We define global networks on the basis of their focus on research questions at the global scale, collection of primary data, use of standardized protocols and metrics, and commitment to long-term global data. Global networks are critical for the future of invasion science because of their potential to extend beyond the capacity of individual partners to identify global priorities for research agendas and coordinate data collection over space and time, assess risks and emerging trends, understand the complex influences of biogeography on mechanisms of invasion, predict the future of invasion dynamics, and use these new insights to improve the efficiency and effectiveness of evidence-based management techniques. While the pace and scale of global change continues to escalate, strategic and collaborative global networks offer a powerful approach to inform responses to the threats posed by biological invasions. Much has been done to address the challenges of biological invasions, but fundamental questions (e.g., which species invade? Which habitats are invaded? How can invasions be effectively managed?) still need to be answered before the spread and impact of alien taxa can be effectively managed. Questions on the role of biogeography (e.g., how does biogeography influence ecosystem susceptibility, resistance and resilience against invasion?) have the greatest potential to address this goal by increasing our capacity to understand and accurately predict invasions at local, continental and global scales. This paper proposes a framework for the development of ‘Global Networks for Invasion Science’ to help generate approaches to address these critical and fundamentally biogeographic questions. We define global networks on the basis of their focus on research questions at the global scale, collection of primary data, use of standardized protocols and metrics, and commitment to long-term global data. Global networks are critical for the future of invasion science because of their potential to extend beyond the capacity of individual partners to identify global priorities for research agendas and coordinate data collection over space and time, assess risks and emerging trends, understand the complex influences of biogeography on mechanisms of invasion, predict the future of invasion dynamics, and use these new insights to improve the efficiency and effectiveness of evidence-based management techniques. While the pace and scale of global change continues to escalate, strategic and collaborative global networks offer a powerful approach to inform responses to the threats posed by biological invasions.
- Published
- 2017
41. Polyaspartate, a biodegradable chelant that improves the phytoremediation potential of poplar in a highly metal-contaminated agricultural soil
- Author
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Stefania Biondi, Valeria Todeschini, Michele Grimaldi, Stefano Castiglione, Antonio Proto, Daniela Baldantoni, Angela Cicatelli, Guido Lingua, Patrizia Torrigiani, Guido Lingua, Valeria Todeschini, Michele Grimaldi, Daniela Baldantoni, Antonio Proto, Angela Cicatelli, Stefania Biondi, Patrizia Torrigiani, and Stefano Castiglione
- Subjects
Environmental Engineering ,chemistry.chemical_element ,Zinc ,EDTA/EDDS ,Management, Monitoring, Policy and Law ,White poplar ,chemistry.chemical_compound ,EDDS ,Chelant ,Copper ,Phytoremediation ,Soil Pollutants ,Chelation ,Waste Management and Disposal ,Edetic Acid ,Environmental Restoration and Remediation ,Chelating Agents ,biology ,Waste management ,fungi ,Succinates ,General Medicine ,Biodegradation ,biology.organism_classification ,Ethylenediamines ,Biodegradation, Environmental ,Populus ,chemistry ,Environmental chemistry ,Soil water ,Polyaspartic acid ,Peptides - Abstract
Phytoremediation is a cost-effective and environment friendly in situ technique for the reclamation of heavy metal-polluted soils. The efficacy of this technique, which relies on tolerant plant species, can be improved by the use of chelating agents. A pot experiment was carried out to evaluate the phytoextraction and phytostabilisation capacities of a white poplar (Populus alba L.) clone named AL35 previously selected for its marked tolerance to copper (Cu) and zinc (Zn). Cuttings were grown on agricultural soil highly contaminated with Cu and Zn, in the presence or not (controls) of a chelant mixture (EDTA/EDDS) known to enhance metal bioavailability and, hence, uptake by plant roots, or the not yet investigated synthetic, highly biodegradable polyaspartic acid (PASP). Both chelant treatments improved the phytostabilisation of Cu and Zn in AL35 plants, whilst the phytoextraction capacity was enhanced only in the case of Cu. Considering that the effectiveness of PASP as phytostabilizer was comparable or better than that of EDTA/EDDS, the low cost of its large-scale chemical synthesis and its biodegradability makes it a good candidate for chelant-enhanced metal phytoextraction from soil while avoiding the toxic side-effects previously described for both EDTA and EDDS.
- Published
- 2014
42. β-lactams resistance gene quantification in an antibiotic resistant Escherichia coli water suspension treated by advanced oxidation with UV/H
- Author
-
Giovanna, Ferro, Francesco, Guarino, Angela, Cicatelli, and Luigi, Rizzo
- Subjects
DNA, Bacterial ,Disinfection ,Ultraviolet Rays ,Colony Count, Microbial ,Escherichia coli ,Hydrogen Peroxide ,beta-Lactams ,Oxidation-Reduction ,Polymerase Chain Reaction ,beta-Lactam Resistance ,Anti-Bacterial Agents - Abstract
Water is one of the most important habitats and route for the spread of antibiotic resistance (AR) in the environment and disinfection processes can be a potential barrier to minimise this risk. In this study the effect of UV/H
- Published
- 2016
43. Genetic and biochemical characterization of rhizobacterial strains and their potential use in combination with chelants for assisted phytoremediation
- Author
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Angela Cicatelli, Stefano Castiglione, Francesco Guarino, and Enrico Baldan
- Subjects
0301 basic medicine ,Assisted phytoremediation ,Chelants ,Stenotrophomonas maltophilia ,Health, Toxicology and Mutagenesis ,Microorganism ,Microbial Consortia ,Amendment ,Agrobacterium ,010501 environmental sciences ,Rhizobacteria ,Plant Roots ,complex mixtures ,01 natural sciences ,Soil ,03 medical and health sciences ,Metals, Heavy ,Soil Pollutants ,Environmental Chemistry ,Toxicology and Mutagenesis ,Biomass ,Helianthus ,Edetic Acid ,Soil Microbiology ,Chelating Agents ,0105 earth and related environmental sciences ,Rhizosphere ,biology ,Bacterial consortium ,fungi ,food and beverages ,General Medicine ,biology.organism_classification ,Sunflower ,Pollution ,Zinc ,Phytoremediation ,Biodegradation, Environmental ,030104 developmental biology ,Agronomy ,Heavy metals ,Health ,Soil microbiology ,Copper - Abstract
Copper and zinc are essential micronutrients in plants but, at high concentrations, they are toxic. Assisted phytoremediation is an emerging "green" technology that aims to improve the efficiency of tolerant species to remove metals from soils through the use of chelants or microorganisms. Rhizobacteria can promote plant growth and tolerance and also affect the mobility, bioavailability, and complexation of metals. A pot experiment was conducted to evaluate the phytoremediation effectiveness of sunflowers cultivated in a Cu- and Zn-spiked soil, in the presence or absence of bacterial consortium and/or chelants. The consortium was constituted of two Stenotrophomonas maltophilia strains and one of Agrobacterium sp. These strains were previously isolated from the rhizosphere of maize plants cultivated on a metal-polluted soil and here molecularly and biochemically characterized. Results showed that the consortium improved sunflower growth and biomass production on the spiked soils. Sunflowers accumulated large amounts of metals in their roots and leaves; however, neither the bacterial consortium nor the chelants, singularly added to pots, influenced significantly Cu and Zn plant uptake. Furthermore, the consecutive soil amendment with the EDTA and bacterial consortium determined a consistent accumulation of metals in sunflowers, and it might be an alternative strategy to limit the use of EDTA and its associated environmental risks in phytoremediation.
- Published
- 2016
44. Artificial mycorrhization does not influence the effects of iron availability on Fe, Zn, Cu, Pb and Cd accumulation in leaves of a heavy metal tolerant white poplar clone
- Author
-
Stefano Castiglione, Alessandro Bellino, Daniela Baldantoni, and Angela Cicatelli
- Subjects
biology ,Chemistry ,fungi ,Clone (cell biology) ,Heavy metals ,Plant Science ,White poplar ,biology.organism_classification ,Metal ,Phytoremediation ,Horticulture ,visual_art ,Botany ,Glomus mosseae - Heavy metals - Phytoremediation - Populus alba - Soil iron availability ,visual_art.visual_art_medium ,Ecology, Evolution, Behavior and Systematics ,Glomus - Abstract
In this study, the phytoextraction capacity of a heavy metal tolerant white poplar clone, grown in the presence of high iron availability and/or mycorrhizas was evaluated. A large amount of iron in available form was determined in initial high concentrations in leaf, which declined along time and affected Cd, Cu, Pb and Zn accumulation. Natural and artificial mycorrhization did not influence these dynamics.
- Published
- 2011
45. Arbuscular mycorrhizal fungi restore normal growth in a white poplar clone grown on heavy metal-contaminated soil, and this is associated with upregulation of foliar metallothionein and polyamine biosynthetic gene expression
- Author
-
Valeria Todeschini, Stefano Castiglione, Stefania Biondi, Patrizia Torrigiani, Angela Cicatelli, Guido Lingua, A. Cicatelli, G. Lingua, V. Todeschini, S. Biondi, P. Torrigiani, and S. Castiglione
- Subjects
WHITE POPLAR ,Plant Science ,White poplar ,ARBUSCULAR MYCORRHIZAL FUNGI ,Cutting ,Metals, Heavy ,Mycorrhizae ,CONTAMINATED SOIL ,HEAVY METALS ,Botany ,Polyamines ,Soil Pollutants ,Mycorrhiza ,Chromatography, High Pressure Liquid ,Glomus ,Plant Proteins ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Inoculation ,METALLOTHIONEINS ,fungi ,food and beverages ,Original Articles ,Blotting, Northern ,biology.organism_classification ,Soil contamination ,Zinc ,Phytoremediation ,Biodegradation, Environmental ,Populus ,Metallothionein ,Copper ,Woody plant - Abstract
† Background and Aims It is increasingly evident that plant tolerance to stress is improved by mycorrhiza. Thus, suitable plant –fungus combinations may also contribute to the success of phytoremediation of heavy metal (HM)-polluted soil. Metallothioneins (MTs) and polyamines (PAs) are implicated in the response to HM stress in several plant species, but whether the response is modulated by arbuscular mycorrhizal fungi (AMF) remains to be clarified. The aim of the present study was to check whether colonization by AMF could modify growth, metal uptake/translocation, and MT and PA gene expression levels in white poplar cuttings grown on HM-contaminated soil, and to compare this with plants grown on non-contaminated soil. † Methods In this greenhouse study, plants of a Populus alba clone were pre-inoculated, or not, with either Glomus mosseae or G. intraradices and then grown in pots containing either soil collected from a multimetal(Cu and Zn) polluted site or non-polluted soil. The expression of MT and PA biosynthetic genes was analysed in leaves using quantitative reverse transcription–PCR. Free and conjugated foliar PA concentrations were determined in parallel. † Results On polluted soil, AMF restored plant biomass despite higher Cu and Zn accumulation in plant organs, especially roots. Inoculation with the AMF caused an overall induction of PaMT1, PaMT2, PaMT3, PaSPDS1, PaSPDS2 and PaADC gene expression, together with increased free and conjugated PA levels, in plants grown on polluted soil, but not in those grown on non-polluted soil. † Conclusions Mycorrhizal plants of P. alba clone AL35 exhibit increased capacity for stabilization of soil HMs, together with improved growth. Their enhanced stress tolerance may derive from the transcriptional upregulation of several stress-related genes, and the protective role of PAs.
- Published
- 2010
46. Genetic structure and introgression in riparian populations ofPopulus albaL
- Author
-
Giuseppe Patrignani, Angela Cicatelli, Giuseppe Brundu, Christian Lexer, M. van Loo, Stefano Castiglione, T. Fossati, Renato Lupi, and Maurizio Sabatti
- Subjects
Germplasm ,education.field_of_study ,Genetic diversity ,Ecology ,Population ,Introgression ,Population genetics ,Biodiversity ,Plant Science ,Biology ,White poplar ,biology.organism_classification ,Genetic structure ,Tree breeding ,education ,Ecology, Evolution, Behavior and Systematics - Abstract
White poplar (Populus alba) is a widespread species of the northern hemisphere. Introgressed populations or hybrid zones with the related species of the European aspen (Populus tremula) have been suggested as potential venues for the identification of functionally important variation for germplasm conservation, restoration efforts and tree breeding. Data on the genetic diversity and structure of introgressed P. alba are available only for sympatric populations from central Europe. Here, clonality, introgression and spatial genetic patterns were evaluated in three riparian populations of P. alba along the Ticino, Paglia-Tevere and Cesano river drainages in Italy. Samples of all three populations were typed for five nuclear microsatellite markers and 137 polymorphic amplified fragment length polymorphisms. Microsatellite-based inbreeding co-efficients (FIS) were significantly positive in all three populations. Genetic diversity was consistently highest in Ticino, the population with the highest level of introgression from P. tremula. Population differentiation (FST) was low between the Ticino valley in northern Italy and the Cesano valley in central Italy and between the central Italian populations of Cesano and Paglia-Tevere, consistent with a role of the Appenine mountain range as a barrier to gene flow between adjacent drainage areas. Introgression was not the primary determinant of within-population spatial genetic structure (SGS) in the studied populations.
- Published
- 2010
47. Epigenetic control of heavy metal stress response in mycorrhizal versus non-mycorrhizal poplar plants
- Author
-
Guido Lingua, Stefania Biondi, Patrizia Torrigiani, Valeria Todeschini, Angela Cicatelli, Stefano Castiglione, Angela Cicatelli, Valeria Todeschini, Guido Lingua, Stefania Biondi, Patrizia Torrigiani, and Stefano Castiglione
- Subjects
Health, Toxicology and Mutagenesis ,Arbuscular mycorrhizal fungi ,White poplar ,DNA methylation ,Epigenome ,Heavymetals ,MSAP technique ,Poplar ,Epigenesis, Genetic ,chemistry.chemical_compound ,Soil ,Stress, Physiological ,Metals, Heavy ,Mycorrhizae ,Gene expression ,Botany ,Environmental Chemistry ,Soil Pollutants ,Epigenetics ,Gene ,biology ,Inoculation ,fungi ,General Medicine ,Methylation ,biology.organism_classification ,Pollution ,Plant Leaves ,Heavy metal ,Populus ,chemistry ,Cytosine - Abstract
It was previously shown that arbuscular mycorrhizal fungi (AMF) exert a significant improvement of growth in a tolerant white poplar (Populus alba L.) clone (AL35) grown on Cu- and Zn-polluted soil via foliar alterations in the levels of defence/stress-related transcripts and molecules. However, nothing is known about the epigenetic changes which occur during tolerance acquisition in response to heavy metals (HMs) in the same mycorrhizal vs. non-mycorrhizal poplar plants. In order to analyse the epigenome in leaves of AL35 plants inoculated or not with AMF and grown in a greenhouse on multimetal polluted or unpolluted soil, the Methylation Sensitive Amplification Polymorphism (MSAP) approach was adopted to detect cytosine DNA methylation. Modest changes in cytosine methylation patterns were detected at first sampling (4 months from planting), whereas extensive alterations (hypomethylation) occurred at second sampling (after 6 months) in mycorrhizal plants grown in the presence of HMs. The sequencing of MSAP fragments led to the identification of genes belonging to several Gene Ontology categories. Seven MSAP fragments, selected on the basis of DNA methylation status in treated vs control AL35 leaves at the end of the experiment, were analysed for their transcript levels by means of qRT-PCR. Gene expression varied in treated samples relative to controls in response to HMs and/or AMF inoculation; in particular, transcripts of genes involved in RNA processing, cell wall and amino acid metabolism were upregulated in the presence of AMF with or without HMs.
- Published
- 2013
48. Microwave treatment of agricultural soil samples
- Author
-
Bruno Bisceglia, D. Esposito, A. Di Luca, Francesco Guarino, Angela Cicatelli, Stefano Castiglione, and Michele Grimaldi
- Subjects
biology ,Soil test ,business.industry ,Chemistry ,Pest control ,food and beverages ,Eruca ,Portulaca ,biology.organism_classification ,Horticulture ,Germination ,Agriculture ,Soil water ,business ,Weed - Abstract
Samples of agricultural soil, sown with Eruca sativa Mill. or Portulaca oleracea L., underwent to different microwave (MW) treatments in reverberating chamber (Incident Power = 600 W), varying in the exposure time. Brief treatment with MWs caused a decrease of P. oleracea seed germination up to 30–50 %, relative to controls, whilst seeds of E. sativa, underwent to the same MW treatments (Incident Power 100 W, T1 = 1 min, T2= 30 sec and T3 = 2 min), did not influence seed germination. However, the T2 MW treatment strongly inhibited seed germination. The MW exposition clearly influences germination of the assayed seeds, consequently this methodology might be particularly effective in weed and pest control of agricultural soils.
- Published
- 2015
49. Erratum to: Genetic and biochemical characterization of rhizobacterial strains and their potential use in combination with chelants for assisted phytoremediation
- Author
-
Angela Cicatelli, Francesco Guarino, Enrico Baldan, and Stefano Castiglione
- Subjects
Health, Toxicology and Mutagenesis ,Environmental Chemistry ,General Medicine ,Pollution - Published
- 2017
50. PCR approach reveals that UV light irradiation of differentiating Mel cells causes non random damages in G6PD genes depending on cell activity and DNA sequence
- Author
-
DEL GAUDIO, ROSANNA, GERACI, GIUSEPPE, FORESTI, MAGDA, Angela Cicatelli, Liliana De Falco, Enrico Avvedimento, Graciana Diez-Roux, Gabriella Minchiotti, DEL GAUDIO, Rosanna, Angela, Cicatelli, Liliana De, Falco, Geraci, Giuseppe, and Foresti, Magda
- Subjects
G6PD retroposon ,DNA repair ,UV mutagen sensitivity ,MEL cell ,Transcription - Published
- 2009
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