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Fungi play a very important, but yet mostly unexplored role. Their widespread occurrence on land and in marine life makes them a challenge and a risk for humans (Brase et al., 2009). Fungi are ingenious producers of complex natural products which show a broad range of biological activities (Bohnert et al., 2010). However, a specific characteristic is the production of toxins. Mycotoxins (from “myco” fungus and toxin), are nonvolatile, relatively low-molecular weight, fungal secondary metabolic products (Brase et al., 2009). The most agriculturally important micotoxins are aflatoxins (AF) which are a group of highly toxic metabolites, studied primarly because of their negative effects on human health. Aflatoxins belong to a group of difuranocumarinic derivatives structurally related, and are produced meanly by fungi of genus Aspergillus spp. Its production depends on many factors such as substrate, temperature, pH, relative humidity and the presence of other fungi. It has been identified 18 types of aflatoxins; the most frequent in foods are B1, B2, G1, G2, M1, and M2 (Bhatnagar et al., 2002). These secondary metabolites contaminate a number of oilseed crops during growth of the fungus and this can result in severe negative economic and health impacts (Cary et al., 2009). The higher levels of aflatoxins have been found in cotton and maize seeds, peanuts, and nuts. In grains like wheat, rice, rye or barley the presence of aflatoxins is less frequent. Mycotoxins may also occur in conjugated form, either soluble (masked mycotoxins) or incorporated into/ associated with/attached to macromolecules (bound mycotoxins). These conjugated mycotoxins can emerge after metabolization by living plants, fungi and mammals or after food processing. Awareness of such altered forms of mycotoxins is increasing, but reliable analytical methods, measurement standards, occurrence, and toxicity data are still lacking (Berthiller et al., 2009). A variety of studies has been conducted in order to understand the process of crop contamination by aflatoxins. Mycotoxins are dangerous metabolites that are often carcinogenic, and they represent a serious threat to both animal and human health (Reverberi et al., 2010). Mycotoxins are considered secondary metabolites because