1. Integrated proteogenomic analysis for inherited bone marrow failure syndrome.
- Author
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Wakamatsu M, Muramatsu H, Sato H, Ishikawa M, Konno R, Nakajima D, Hamada M, Okuno Y, Kawashima Y, Hama A, Ito M, Iwafuchi H, Takahashi Y, and Ohara O
- Subjects
- Humans, Male, Female, Child, Adult, Adolescent, Child, Preschool, Anemia, Diamond-Blackfan genetics, Anemia, Diamond-Blackfan diagnosis, Young Adult, Fanconi Anemia genetics, Fanconi Anemia diagnosis, Proteomics methods, Infant, Shwachman-Diamond Syndrome genetics, Dyskeratosis Congenita genetics, Dyskeratosis Congenita diagnosis, Dyskeratosis Congenita pathology, Bone Marrow Failure Disorders genetics, Bone Marrow Failure Disorders pathology, Proteogenomics methods, Bone Marrow Diseases genetics, Bone Marrow Diseases pathology
- Abstract
Recent advances in in-depth data-independent acquisition proteomic analysis have enabled comprehensive quantitative analysis of >10,000 proteins. Herein, an integrated proteogenomic analysis for inherited bone marrow failure syndrome (IBMFS) was performed to reveal their biological features and to develop a proteomic-based diagnostic assay in the discovery cohort; dyskeratosis congenita (n = 12), Fanconi anemia (n = 11), Diamond-Blackfan anemia (DBA, n = 9), Shwachman-Diamond syndrome (SDS, n = 6), ADH5/ALDH2 deficiency (n = 4), and other IBMFS (n = 18). Unsupervised proteomic clustering identified eight independent clusters (C1-C8), with the ribosomal pathway specifically downregulated in C1 and C2, enriched for DBA and SDS, respectively. Six patients with SDS had significantly decreased SBDS protein expression, with two of these not diagnosed by DNA sequencing alone. Four patients with ADH5/ALDH2 deficiency showed significantly reduced ADH5 protein expression. To perform a large-scale rapid IBMFS screening, targeted proteomic analysis was performed on 417 samples from patients with IBMFS-related hematological disorders (n = 390) and healthy controls (n = 27). SBDS and ADH5 protein expressions were significantly reduced in SDS and ADH5/ALDH2 deficiency, respectively. The clinical application of this first integrated proteogenomic analysis would be useful for the diagnosis and screening of IBMFS, where appropriate clinical screening tests are lacking., (© 2024. The Author(s).)
- Published
- 2024
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