316 results on '"Andrew Hunt"'
Search Results
2. Comparing temporal characteristics of slug flow from tomography measurements and video observations
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Marc Olbrich, Andrew Hunt, Terri Leonard, Dennis S. van Putten, Markus Bär, Kilian Oberleithner, and Sonja Schmelter
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Slug flow ,Interface dynamics ,Tomography ,Video observation ,Electric apparatus and materials. Electric circuits. Electric networks ,TK452-454.4 - Abstract
In industrial operations, the slug flow pattern can lead to serious problems, that are mostly caused by the liquid slugs of the flow. Hence, a detailed description of the slug flow pattern is of special interest. In this context, the temporal flow characteristics that are derived from high-speed video observations of the flow, are compared to tomography measurements. For this, the liquid level time series as well as the temporal slug characteristics of two different slug flow experiments are considered. It is shown that the liquid level time series from the video observations are systematically overestimated, but the slug dynamics are in good agreement.
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- 2021
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3. Time Interval to Initiation of Whole-Brain Radiation Therapy in Patients With Small Cell Lung Cancer With Brain Metastasis
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Neil Chevli, MD, Andrew Hunt, MD, Waqar Haque, MD, Andrew M. Farach, MD, Jay A. Messer, MD, Suporn Sukpraprut-Braaten, PhD, Eric H. Bernicker, MD, Jun Zhang, MD, E. Brian Butler, MD, and Bin S. Teh, MD
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Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose: Patients with small cell lung cancer (SCLC) who have brain metastases require whole-brain radiation therapy (WBRT). When there is no emergent indication for WBRT, patients may receive systemic therapy first and WBRT afterward. In scenarios when systemic therapy is initiated first, it has not been previously investigated whether delaying WBRT is harmful. Methods and Materials: The National Cancer Database was queried (2004-2016) for patients with SCLC with brain metastases who received 30 Gy in 10 fractions of WBRT. Patients were divided into groups based on whether they received early WBRT (3-14 days after initiation of chemotherapy) or late WBRT (15-90 days after initiation of chemotherapy). Demographic and clinicopathologic categorical variables were compared between those who had early WBRT (3-14 days) and those who had late WBRT (15-90 days). Factors predictive for late WBRT were determined. Overall survival (OS), which was defined as days from diagnosis to death, was evaluated and variables prognostic for OS were determined. Results: A total of 1082 patients met selection criteria; 587 (54%) had early WBRT and 495 (46%) received late WBRT. Groups were similarly distributed aside from days from initiating chemotherapy to initiating WBRT (P < .001). The early WBRT group had a median of 7 days (interquartile range [IQR], 5-10 days) from initiating chemotherapy to initiating WBRT and the late WBRT group had a median of 34 days (IQR, 21-57 days). On binary logistic regression analysis, a longer time interval between diagnosis and the start of systemic therapy was predictive for later WBRT. Median OS was 8.7 months for early WBRT and 7.5 months for late WBRT (hazard ratio [HR], 1.165; P = .008). Early WBRT (P = .02), female sex (P = .045), and private insurance (P = .04) were favorable prognostic factors for OS on multivariable analysis, whereas older age (P = .006) was an unfavorable prognostic factor. Conclusions: Patients with SCLC and brain metastases who received early WBRT were found to have a modest improvement in OS compared with patients who received late WBRT. These findings suggest that early WBRT should be offered to patients who have brain metastases, even in the absence of an indication for emergent WBRT.
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- 2021
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4. Effect of systematic and random flow measurement errors on history matching: a case study on oil and wet gas reservoirs
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Mahdi Sadri, Seyed M. Shariatipour, Andrew Hunt, and Masoud Ahmadinia
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Flow measurement ,History matching ,Systematic error ,Random error ,Wet gas reservoir ,Petroleum refining. Petroleum products ,TP690-692.5 ,Petrology ,QE420-499 - Abstract
Abstract History matching is the process of modifying a numerical model (representing a reservoir) in the light of observed production data. In the oil and gas industry, production data are employed during a history matching exercise in order to reduce the uncertainty in associated reservoir models. However, production data, normally measured using commercial flowmeters that may or may not be accurate depending on factors such as maintenance schedules, or estimated using mathematical equations, inevitably has inherent errors. In other words, the data which are used to reduce the uncertainty of the model may have considerable uncertainty in itself. This problem is exacerbated for gas condensate and wet gas reservoirs as there are even greater errors associated with measuring small fractions of liquid. The influence of this uncertainty in the production data on history matching has not been addressed in the literature so far. In this paper, the effect of systematic and random flow measurement errors on history matching is investigated. Initially, 14 production data sets with different ranges of systematic and random errors, from 0 to 10%, have been employed in a history matching exercise for an oil reservoir and the results have later been evaluated based on a reference model. Subsequently, 23 data sets with errors ranging from 0 to 20% have been employed in the same process for a wet gas reservoir. The results show that for both cases systematic errors considerably affect history matching, while the effect of random errors on the considered scenarios is seen to be insignificant. Although reservoir model parameters in the wet gas reservoir were not as sensitive to the flow measurement errors as in the oil reservoir, for both cases, the future production forecast was significantly affected by the errors. Permeability was seen to be the most sensitive history matching parameter to the flow measurement errors in the oil reservoir, while for the wet gas reservoir, the most sensitive parameter was the forecast of future oil and gas production. Finally, considering the noticeable effect of systematic errors on both cases, it is suggested that flowmeter calibration and regular maintenance is prioritised, although the subsequent economic cost needs to be considered.
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- 2019
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5. Hyperfractionated abdominal reirradiation for gastrointestinal malignancies
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Andrew Hunt, Prajnan Das, Bruce D. Minsky, Eugene J. Koay, Sunil Krishnan, Joseph M. Herman, Cullen Taniguchi, Albert Koong, Grace L. Smith, and Emma B. Holliday
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Reirradiation ,External beam ,Hyperfractionated ,Abdominal ,Gastrointestinal malignancies ,Toxicity ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background We sought to determine the role of abdominal reirradiation for patients presenting with recurrent or new primary gastrointestinal (GI) malignancies. At our institution, we have established a hyperfractionated, accelerated reirradiation regimen consisting of 39 Gray (Gy) in 26 twice-daily fractions. Although this regimen is used frequently in the pelvis, we sought to determine its toxicity and efficacy for abdominal tumors. Methods Twenty-four patients who received abdominal reirradiation with a hyperfractionated, accelerated approach from 2000 to 2017 were identified. Overall survival (OS) and local progression-free survival (LPFS) were calculated using the Kaplan-Meier method. Several patient, tumor and treatment characteristics were evaluated on univariate analyses for association with OS and LPFS using a Cox proportional hazards model. Results Of the twenty-four patients identified, the majority (n = 11, 46%) had pancreatic adenocarcinoma as their primary disease but also included upper GI adenocarcinoma (n = 4), colon adenocarcinoma (n = 3), hepatobiliary cancers (n = 4) and other malignancies (n = 2). The majority of patients received 45–50.4Gy in 1.8Gy fractions as their initial abdominal radiation course. The median reirradiation dose was 39Gy in 26 twice-daily fractions with a minimum six hour interval. The median [interquartile range (IQR)] interval between the courses of radiotherapy was 28 [18.6–38.9] months. Only palliative reirradiation intent was associated with decreased OS. While colon adenocarcinoma primary was significantly associated with increased LPFS, the sample size was small (n = 3). The 1-yr rate of LPFS was 38%. The median [IQR] duration of freedom from local progression was 8 [3.8–19.2] months. The 1-year OS was 50% and the median (IQR) OS was 14 [6.3–19.6] months. Thirteen patients (54%) had acute side effects with one patient experiencing G3 nausea and one experiencing a G4 bleed; the remaining patients experienced G1-G2 symptoms. Conclusion Hyperfractionated, accelerated reirradiation to the abdomen was relatively well-tolerated but provided limited local control to recurrent or second primary abdominal malignancies. Reirradiation could play a role in treating these patients with palliative or curative intent, but alternative strategies for delivering increased biologically effective dose should be further explored.
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- 2018
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6. Propellant Slosh Force and Mass Measurement
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Andrew Hunt, Richard Foster-Turner, and Ross Drury
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Motor vehicles. Aeronautics. Astronautics ,TL1-4050 - Abstract
We have used electrical capacitance tomography (ECT) to instrument a demonstration tank containing kerosene and have successfully demonstrated that ECT can, in real time, (i) measure propellant mass to better than 1% of total in a range of gravity fields, (ii) image propellant distribution, and (iii) accurately track propellant centre of mass (CoM). We have shown that the ability to track CoM enables the determination of slosh forces, and we argue that this will result in disruptive changes in a propellant tank design and use in a spacecraft. Ground testing together with real-time slosh force data will allow an improved tank design to minimize and mitigate slosh forces, while at the same time keeping the tank mass to a minimum. Fully instrumented Smart Tanks will be able to provide force vector inputs to a spacecraft inertial navigation system; this in turn will (i) eliminate or reduce navigational errors, (ii) reduce wait time for uncertain slosh settling, since actual slosh forces will be known, and (iii) simplify slosh control hardware, hence reducing overall mass. ECT may be well suited to space borne liquid measurement applications. Measurements are independent of and unaffected by orientation or levels of g. The electronics and sensor arrays can be low in mass, and critically, the technique does not dissipate heat into the propellant, which makes it intrinsically safe and suitable for cryogenic liquids. Because of the limitations of operating in earth-bound gravity, it has not been possible to check the exact numerical accuracy of the slosh force acting on the vessel. We are therefore in the process of undertaking a further project to (i) build a prototype integrated “Smart Tank for Space”, (ii) undertake slosh tests in zero or microgravity, (iii) develop the system for commercial ground testing, and (iv) qualify ECT for use in space.
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- 2018
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7. Impact of the Florida Birth-Related Neurological Injury Compensation Association (NICA) on Obstetrician and Attorney Practices
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Karen W. Geletko, Andrew Hunt, and Leslie M. Beitsch
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Public aspects of medicine ,RA1-1270 - Abstract
As health reform continues to unfold nationally, one ofthe more dramatic strategies for reform ofthe current medical liability system is to move towards a no-fault compensation system. Although, no state has established a comprehensive no-fault medical malpractice system, the Florida Birth-Related Neurological Injury Compensation Association (NICA) is a unique and rare working model ofa functioning no-fault insurance program. A cross-sectional design was utilized to survey obstetricians and health law attorneys practicing in Florida in 2011 to ascertain their knowledge and opinions of NICA and its impact on practice patterns and defensive medicine. The findings indicate that respondents believe NICA has had no effect on insurance rates among both obstetricians (39.8%) and attorneys(35.3%) nor did obstetricians (52.8%) or attorneys (35.8%) believe it has affected defensive medicine practices. Additionally, the findings further reinforced stereotypic expectations that obstetricians prefer an administrative process (35%) or arbitration (37.5%), while attorneys have a strong preference towards a standard courtroom venue (57.2%). With over two decades of experience with successful implementation of a no-fault obstetrical mal- practice model, Florida has a strong foundation for further bold experimentation. In addition, because of its large population size, the potential for a pilot study expanding the scope ofclinical practice coverage is promising. Further study and experi- mental models should be considered as possible next steps to explore in Florida.
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- 2012
8. Beatlemania in America: Fan Culture from Below
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Andrew Hunt
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- 2023
9. We Begin Bombing in Five Minutes: Late Cold War Culture in the Age of Reagan
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Andrew Hunt
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- 2021
10. A dynamic linear model for heteroscedastic LDA under class imbalance.
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Kojo Sarfo Gyamfi, James Brusey, Andrew Hunt 0001, and Elena I. Gaura
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- 2019
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11. Lower Extremity Inverse Kinematics Results Differ Between Inertial Measurement Unit- and Marker-Derived Gait Data
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Jocelyn F. Hafer, Julien A. Mihy, Andrew Hunt, Ronald F. Zernicke, and Russell T. Johnson
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Rehabilitation ,Biophysics ,Orthopedics and Sports Medicine - Abstract
In-lab, marker-based gait analyses may not represent real-world gait. Real-world gait analyses may be feasible using inertial measurement units (IMUs) in combination with open-source data processing pipelines (OpenSense). Before using OpenSense to study real-world gait, we must determine whether these methods estimate joint kinematics similarly to traditional marker-based motion capture (MoCap) and differentiate groups with clinically different gait mechanics. Healthy young and older adults and older adults with knee osteoarthritis completed this study. We captured MoCap and IMU data during overground walking at 2 speeds. MoCap and IMU kinematics were computed with OpenSim workflows. We tested whether sagittal kinematics differed between MoCap and IMU, whether tools detected between-group differences similarly, and whether kinematics differed between tools by speed. MoCap showed more anterior pelvic tilt (0%–100% stride) and joint flexion than IMU (hip: 0%–38% and 61%–100% stride; knee: 0%–38%, 58%–89%, and 95%–99% stride; and ankle: 6%–99% stride). There were no significant tool-by-group interactions. We found significant tool-by-speed interactions for all angles. While MoCap- and IMU-derived kinematics differed, the lack of tool-by-group interactions suggests consistent tracking across clinical cohorts. Results of the current study suggest that IMU-derived kinematics with OpenSense may enable reliable evaluation of gait in real-world settings.
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- 2023
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12. Linear dimensionality reduction for classification via a sequential Bayes error minimisation with an application to flow meter diagnostics.
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Kojo Sarfo Gyamfi, James Brusey, Andrew Hunt 0001, and Elena I. Gaura
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- 2018
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13. Personal protective equipment for <scp>COVID</scp> ‐19 among healthcare workers in an emergency department: An exploratory survey of workload, thermal discomfort and symptoms of heat strain
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Andrew Hunt, Joseph Ting, Daniel Schweitzer, E‐Liisa Laakso, and Ian Stewart
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Emergency Medicine - Abstract
To examine workload, thermal discomfort, and heat-related symptoms among healthcare workers (HCWs) in an Australian emergency department during the COVID-19 pandemic.A cross-sectional study design was employed among HCWs in an emergency department at a metropolitan hospital in Brisbane, Australia. Respondents provided demographic information including their self-reported age, sex, height, weight, role (e.g., doctor, nurse), and whether they wore PPE during their shift, rated as either Full PPE, Partial PPE, or usual uniform or scrubs. The workload of HCWs was assessed with the National Aeronautics and Space Administration's task load index (NASA-TLX). Thermal discomfort was evaluated using scales from the International Organisation for Standardisation. Responders rated their subjective heat illness using the Environmental Symptoms Questionnaire (ESQ-SHI).Fifty-nine HCWs completed the survey (27 male, 31 female). Overall workload from the NASA-TLX was 64.6 (IQR: 56.5-73.3) for doctors, 72.5 (IQR: 63.3-83.3) for nurses, and 66.7 (IQR: 58.3-74.17) for other staff, representing moderate to high ratings. Eighty-one percent reported thermal sensation to be slightly warm, warm, or hot, and 88% reported being uncomfortable, ranging from slightly to extremely. Ninety-seven percent reported at least one heat-strain symptom. More than 50% reported light-headedness or headache and approximately 30% reported feeling dizzy, faint, or weak.Emergency department HCWs experience thermal discomfort when wearing PPE. Combined with their workloads, HCWs experienced symptoms related to heat strain. Therefore, careful consideration should be given to managing heat strain among HCWs when wearing PPE in an Emergency Department. This article is protected by copyright. All rights reserved.
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- 2022
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14. Linear classifier design under heteroscedasticity in Linear Discriminant Analysis.
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Kojo Sarfo Gyamfi, James Brusey, Andrew Hunt 0001, and Elena I. Gaura
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- 2017
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15. OA42 Patient experiences of managing their rare rheumatic disease
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Emma Dures, Celia Almeida, Andrew Hunt, Peter C Lanyon, Nicola Walsh, and Joanna C Robson
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Rheumatology ,Pharmacology (medical) - Abstract
Background/Aims Systemic lupus erythematosus, systemic vasculitis, inflammatory myositis, scleroderma and Sjogren’s syndrome are rare autoimmune rheumatic diseases (RAIRDs). A survey of people with RAIRDs found 61% were struggling, 45% had reduced/stopped work and 45% reported an impact on family life. A survey of NHS rheumatology departments found 80% do not offer access to self-management support to people with RAIRDs. Aims: To understand the patients’ experiences of their RAIRD and views on interventions to support self-management, including content and structure. Methods Online focus groups via Zoom using a topic guide developed with a multi-disciplinary team including patient partners with lived experience. Focus groups were advertised via patient charities’ social media platforms (Vasculitis UK, Scleroderma and Raynaud’s UK, Lupus UK, Myositis UK and the British Sjogren’s Syndrome Association). Sessions were audio-recorded, transcribed, organised using NVIVO, and analysed thematically. Results Twenty-six patients, 21 (80.76 %) female, median age 62 (range 34-82), participated in six focus groups. Diagnoses included systemic lupus erythematosus (4), inflammatory myositis (7), ANCA-associated vasculitis (5), mixed connective tissue disease (2), scleroderma (1), undifferentiated vasculitis (2), and primary or secondary Sjogren’s (16). Five patients (19%) were newly diagnosed ( Two related main themes capture the data:“I’m constantly doing medical admin along with surviving and fighting a disease.” A lack of joined-up healthcare (“I’ve got some great people but they’re not working as a team”), difficulty accessing specialists (“Everyone just passes you like the sort of parcel that no one wants to open”) and disease complexity (“she said you’re too complicated”) makes managing RAIRDs hard, resource-intensive work (“I’ve had to push so hard for all of it and I think that only happens with very rare conditions”).“Because you have very rare conditions it’s uniquely isolating.” The psychological impact of having complex autoimmune conditions can be exacerbated when they are poorly understood by family and friends (“I’ve encountered mental health problems having to manage family expectations of me”) and health professionals (“they’ve never seen a patient like me in their life”). Patients described strategies that could be beneficial at an individual level (“acceptance, mindfulness, meditation and to not beat myself up about things”) and the importance of addressing mental health (“you’ve got to build your self-esteem, so you don’t feel rubbish all the time”). Conclusion Patients with RAIRDs identified shared experiences to inform the development of a cross-condition self-management intervention. These include negotiating healthcare systems and managing the psychological impact of RAIRDs. Further work is needed with under-represented groups to identify whether their support needs are distinct. Disclosure E. Dures: None. C. Almeida: None. A. Hunt: None. P.C. Lanyon: None. N. Walsh: None. J.C. Robson: None.
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- 2023
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16. Sustainable Solvents: Perspectives from Research, Business and International Policy
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James H Clark, Andrew Hunt, Corrado Topi, Giulia Paggiola, James Sherwood
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- 2017
17. Matthew Higgs interviewed by Andrew Hunt
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Andrew Hunt
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Visual Arts and Performing Arts - Abstract
This interview considers Matthew Higgs’s role in programming work by self-taught artists and those with developmental disabilities within the context of White Columns, a non-profit artist-run space located in Chelsea, New York City. The conversation describes the active support of work before any critical or institutional consensus emerges around it and explores how painting by self-taught artists and those with developmental disabilities can provide a productive counterpoint to self-reflexive work or art more critical of the narrative of painting as a medium. The term ‘outsider’ is also scrutinized as a useful generalization for painting that operates outside of conventional forms of education and existing foundational narratives in culture. Also discussed is the impact of exemplary historical curators and dealers in the United States and Germany who serve to act as model ‘maverick iconoclasts’.
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- 2022
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18. Minor painting: Outsiders and outliers
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Andrew Hunt
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Visual Arts and Performing Arts - Abstract
The editorial surveys the current terrain of contemporary self-taught and outsider art. Using Deleuze and Guattari’s Towards a Minor Literature to suggest a specific category of minor painting, the text discusses how museological discourse on outsider art that developed over the twentieth century has been transformed over the past decade by large museum exhibitions and smaller community organizations’ activities. These include key examples such as the National Gallery of Art, Washington’s exhibition Outliers and American Vanguard Art curated by Lynne Cooke, and White Columns’s exemplary programme that supports visionary and self-taught artists in New York City. The text outlines how these examples alongside curatorial activism and reappraisal have attempted to recalibrate art history and provides an analysis of the inclusion of outsider and self-taught art in biennales such as Venice, quinquennials such as Documenta and small publicly funded spaces with a desire for equality and inclusion.
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- 2022
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19. Mortality Improvement Rates: Modeling, Parameter Uncertainty, and Robustness
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Andrew Hunt and Andrés M. Villegas
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Statistics and Probability ,Economics and Econometrics ,Statistics, Probability and Uncertainty - Published
- 2022
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20. Testing an Electrical Capacitance Tomography sensor in liquid hydrogen
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Philipp Behruzi, Andrew Hunt, Richard Foster-Turner, and Alexander Fischer
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- 2023
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21. AB-452663-1 THE IMPACT OF LOW POSTERIOR LEFT ATRIAL WALL VOLTAGE ON THE OUTCOMES OF CATHETER ABLATION FOR PERSISTENT ATRIAL FIBRILLATION: A CAPLA RANDOMIZED CLINICAL TRIAL SUBSTUDY
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David Chieng, Hariharan Sugumar, Andrew Hunt, Liang-Han Ling, Louise Segan, Ahmed Al-Kaisey, Joshua Hawson, Sandeep Prabhu, Aleksandr Voskoboinik, Geoffrey R. Wong, Joseph B. Morton, Geoffrey Lee, Laurence D. Sterns, Prashanthan Sanders, Jonathan M. Kalman, and Peter M. Kistler
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Physiology (medical) ,Cardiology and Cardiovascular Medicine - Published
- 2023
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22. Factors associated with patient activation in inflammatory arthritis: a multisite cross-sectional study
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Emma Dures, Bethan Jones, Andrew Hunt, Mwidimi Ndosi, and Diana Harcourt
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Patient Activation Measure ,Self-efficacy ,medicine.medical_specialty ,self-management ,Self-management ,business.industry ,Cross-sectional study ,Psychological intervention ,Health literacy ,Articles ,Rheumatology ,Internal medicine ,patient activation ,medicine ,survey ,business ,AcademicSubjects/MED00010 ,Psychosocial ,self-efficacy ,health literacy - Abstract
Objectives Patient activation covers the skills, abilities and behaviour that impact how able and willing someone is to take an active role in self-managing their health. This study explored clinical and psychosocial factors associated with patient activation in rheumatology patients. Methods This was a cross-sectional study using postal survey methods. Participants with inflammatory rheumatic conditions were from six rheumatology centres in England. Patient activation was captured using the Patient Activation Measure (PAM). Twenty-nine explanatory factors were tested for potential association with patient activation in univariable and multivariable analyses. In preliminary multivariable analyses, factors found to have an association with patient activation at a P Results The sample comprised 251 participants (74% female) with a mean age of 59.31 years (s.d. 12.69), disease duration of 14.48 years (s.d. 12.52) and a PAM score of 58.3 (s.d. 11.46). Of the 29 candidate factors, 25 were entered into a preliminary multivariable analysis. In the final multivariable analysis, four factors (self-efficacy, the illness belief that treatment will control participants’ condition and two dimensions of health literacy) were significantly associated with patient activation. This final model accounted for 40.4% of the variance in PAM scores [F(4, 246) = 41.66, P Conclusions Patient activation is important in managing rheumatic conditions. Our data confirm that self-efficacy and health literacy are particular targets for patient activation interventions.
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- 2021
23. K-Means Clustering using Tabu Search with Quantized Means.
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Kojo Sarfo Gyamfi, James Brusey, and Andrew Hunt 0001
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- 2017
24. Element Recovery and Sustainability
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Andrew Hunt, Andrew Hunt
- Published
- 2013
25. Better Value Investing: Improve your results as a value investor
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Andrew Hunt
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- 2015
26. Heuristic Search and Information Visualization Methods for School Redistricting.
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Marie desJardins, Blazej Bulka, Ryan Carr, Andrew Hunt, Priyang Rathod, and Penny Rheingans
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- 2006
27. Breakthrough ideas.
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James Coplien, Brian Foote, Richard P. Gabriel, Dave A. Thomas, Cristina Videira Lopes, Brian Marick, Bonnie A. Nardi, Rob Tow, Andrew Hunt, and Glenn Vanderburg
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- 2005
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28. Stichwortverzeichnis
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Dave Thomas and Andrew Hunt
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- 2021
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29. Automated identification of installed malicious Android applications.
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Mark D. Guido, Jared Ondricek, Justin Grover, David Wilburn, Thanh Nguyen, and Andrew Hunt
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- 2013
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30. A new W3C markup standard for text-to-speech synthesis.
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Mark R. Walker, Jim Larson, and Andrew Hunt
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- 2001
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31. De novo design of protein logic gates
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Matthew S. Wilken, Florian Busch, Zibo Chen, Ryan Kibler, Galen Dods, Vicki H. Wysocki, Christie Ciarlo, Mengxuan Jia, Hanna Liao, Michael C. Jewett, John A. Stamatoyannopoulos, Jocelynn R. Pearl, Basile I. M. Wicky, Shon Green, David Baker, Zachary L. VanAernum, Hana El-Samad, Scott E. Boyken, and Andrew Hunt
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Transcription, Genetic ,Logic ,Computer science ,T-Lymphocytes ,NAND gate ,Cooperativity ,Computational biology ,Protein Engineering ,010402 general chemistry ,Biochemistry ,01 natural sciences ,Mass Spectrometry ,Article ,03 medical and health sciences ,Synthetic biology ,stomatognathic system ,Yeasts ,Humans ,Protein Interaction Maps ,Hepatitis A Virus Cellular Receptor 2 ,Molecular Biology ,030304 developmental biology ,Protein function ,0303 health sciences ,Modularity (networks) ,Multidisciplinary ,business.industry ,fungi ,Cell Biology ,Protein engineering ,Modular design ,humanities ,0104 chemical sciences ,ComputingMethodologies_PATTERNRECOGNITION ,XNOR gate ,Post translational ,Logic gate ,Protein processing ,Nucleic Acid Conformation ,Synthetic Biology ,business ,Protein Processing, Post-Translational ,Hardware_LOGICDESIGN ,Biotechnology - Abstract
Designer gates Signaling in cells can occur through protein-protein interactions. Chen et al. describe the design of logic gates that can regulate protein association. The gates were built from small, designed proteins that all have a similar structure but where one module can be designed to interact specifically with another module. Using monomers and covalently connected monomers as inputs and encoding specificity through designed hydrogen-bond networks allowed the construction of two-input or three-input gates based on competitive binding. The modular control elements were used to regulate the association of elements of transcription machinery and split enzymes in vitro and in yeast cells. Science , this issue p. 78
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- 2020
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32. Modelling investment plans at asset portfolio level using optimum plan rationalisation approaches
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Andrew Hunt, Robert Lange, Meirion Morgan, and Simon J. E. Taylor
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0209 industrial biotechnology ,Operations research ,Computer science ,Process (engineering) ,020208 electrical & electronic engineering ,02 engineering and technology ,Plan (drawing) ,Investment (macroeconomics) ,Rational planning model ,020901 industrial engineering & automation ,Control and Systems Engineering ,Capital (economics) ,0202 electrical engineering, electronic engineering, information engineering ,Portfolio ,Asset (economics) ,Operating expense - Abstract
A new approach to modelling asset portfolio capital investment and operational plans using a rationalisation process of multiple asset life cycle cost model’s is presented. It overcomes the traditional limitations of stocastic models which do not explicitly consider deliverability issues such as scrarce resources, access in combination with an organisations objectives and finamcial imapcts. The approach builds on earlier work including the Strategic Asset Lifecycle Value Optimisation (SALVO) research and development project and rational decision making. It uses individual life cycle cost models for each asset class and programme-level constraints and multi-criteria to create an optimal plan with transparent cost/benefit/risk justification. Alternative scenarios can then be developed from this idealised plan using significance cooling and hill climbing algorithms. These explore the real-world constraints and competing objectives that might prevent such a plan from being delivered. In this way, a realistic and deliverable plan is produced, with fully quantified business impact of any constraints or programme changes that are required. Using the idealised plan as a benchmark, the rationalised variants and scenarios may be compared and a budget and resource-committed programme then selected. The approach is found to be equally applicable for capital investment, operations and maintenance activities, including the combined operational expenditures (OpEx) and capital (CapEx) plans at enterprise portfolio level. Further, its application is applicable for any industry and regulated or non-regulated asset managing organisations.
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- 2020
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33. Electromagnetic Technique for Hydrocarbon and Sand Transport Monitoring: Proof of Concept
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Andrew Hunt, Yessica Arellano, and Lu Ma
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Permittivity ,Conductivity ,Materials science ,General Computer Science ,Displacement current ,Multiphase flow ,General Engineering ,fluid flow measurement ,Mechanics ,permittivity ,law.invention ,Amplitude ,law ,electromagnetic measurements ,Eddy current ,General Materials Science ,Metering mode ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,lcsh:TK1-9971 ,Electrical conductor - Abstract
Electromagnetic metering offers significant promise in the measurement of low-conductivity medium like in multiphase flow. Such measurements rely on the measurement of conductivity contrasts formed by two medium of substances, one substance being conductive and the other being non-conductive. In these conditions, it is assumed that the permittivity-induced displacement current is small compared to eddy current induced by conductivity, therefore the displacement current is usually ignored. The present study demonstrates, through solution of the electromagnetic forward problem and pilot tests, that the temporal, spatial and frequency related permittivity and conductivity changes are all captured by the induced electrical voltage measurement. Permittivity reflects in the amplitude and the conductivity reflects both in the amplitude and the phase angle of the voltage. The weight of each parameter to the voltage measurement is studied here. The findings of the study disclose that an electromagnetic metering system may offer advantages in continuously monitoring and measuring hydrocarbon contents and solid concentrations via both the amplitude and phase shift changes.
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- 2020
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34. Rheumatology patients’ perceptions of patient activation and the Patient Activation Measure: A qualitative interview study
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Emma Dures, Bethan Jones, Sarah Hewlett, Diana Harcourt, and Andrew Hunt
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medicine.medical_specialty ,Nursing (miscellaneous) ,media_common.quotation_subject ,Physical Therapy, Sports Therapy and Rehabilitation ,03 medical and health sciences ,Social support ,0302 clinical medicine ,Nursing ,Rheumatology ,Internal medicine ,Perception ,Health care ,medicine ,Humans ,Formerly Health & Social Sciences ,Orthopedics and Sports Medicine ,030212 general & internal medicine ,Qualitative Research ,media_common ,030203 arthritis & rheumatology ,Patient Activation Measure ,Self-management ,business.industry ,Arthritis ,Self-Management ,Rehabilitation ,Content analysis ,Chiropractics ,Patient Participation ,business ,Qualitative research - Abstract
Introduction\ud An important aspect of self-management is patient activation (the skills, abilities and confidence someone uses to actively manage their health). The dominant method of capturing patient activation is the Patient Activation Measure (PAM) which has been integrated into many aspects of clinical practice in musculoskeletal care. However, limited research has investigated how rheumatology patients understand and perform patient activation, and how closely their perceptions align with the PAM.\ud \ud Methods\ud Seventeen patients from two rheumatology departments in South West England participated in semi-structured interviews at two timepoints. They discussed how they actively managed their health and their views on the PAM. Data on activation were analysed using framework analysis and data on the PAM were analysed using content analysis.\ud \ud Results\ud Participants self-managed with determination, finding ways to make small, sustainable behaviour changes and effectively navigate the healthcare system. They reported the value of knowing what self-management techniques suited them individually and reported benefitting from positive perceptions of their own health and good social support. Participants noted that the PAM did not always capture the fluctuating nature of their inflammatory arthritis and the collaborative nature of healthcare.\ud \ud Conclusions\ud Patients' perceptions and experiences of patient activation covered a wide range of skills, behaviours and beliefs. However, these are not always captured by the PAM. Therefore, its use as a clinical tool is best accompanied by dialogue with patients to understand their self-management.
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- 2022
35. Collaboration between doctoral researchers and patient research partners: reflections and considerations
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Bethan Jones and Andrew Hunt
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education ,General Medicine ,Public Involvement - Abstract
A key principle of working in collaboration with patient research partners (patients contributing to research projects as team members, rather than as participants) is that they should be equal partners with researchers and health professionals. This presents a challenge in doctoral research, where students are expected to own their research decisions. Consequently, efforts are required to ensure that patient partners’ involvements are not tokenistic. This case study brings together the reflections of a recently completed doctoral student and a patient partner, who was part of the doctoral supervisory team. It discusses the role that the patient partner took during the doctorate and the activities in which he was involved. Both the researcher and the patient partner reflect on their expectations and experiences of collaboration. These reflections include factors that facilitated good working practices, the process of building rapport, and the benefits each got out of their collaboration. The interactions exploring ‘the dance of academia’ (the processes that were formally part of the PhD process or the aspects of academic work that were not directly related to completing the research) required recognition. Open, ongoing communication and practical considerations to support the patient partner were key to establishing a strong working relationship, and to determining what a meaningful contribution looked like at each stage of the process. Working with a patient partner as a doctoral student adds value to the doctoral process, and it is a vital opportunity to develop good practice as a researcher.
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- 2022
36. IMU-derived kinematics detect gait differences with age or knee osteoarthritis but differ from marker-derived inverse kinematics
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Jocelyn F. Hafer, Julien A. Mihy, Andrew Hunt, Ronald F. Zernicke, and Russell T. Johnson
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human activities - Abstract
Common in-lab, marker-based gait analyses may not represent daily, real-world gait. Real-world gait analyses may be feasible using inertial measurement units (IMUs), especially with recent advancements in open-source methods (e.g., OpenSense). Before using OpenSense to study real-world gait, we must determine whether these methods: (1) estimate joint kinematics similarly to traditional marker-based motion capture (MoCap) and (2) differentiate groups with clinically different gait mechanics. Healthy young and older adults and older adults with knee osteoarthritis completed this study. We captured MoCap and IMU data during overground walking at participants’ self-selected and faster speeds. MoCap and IMU kinematics were computed with appropriate OpenSim workflows. We tested whether sagittal kinematics differed between MoCap- and IMU-derived data, whether tools detected between-group differences similarly, and whether kinematics differed between tools by speed. MoCap data showed more flexion than IMU data (hip: 0-47 and 65-100% stride, knee: 0-38 and 58-91% stride, ankle: 18-100% stride). Group kinematics differed at the hip (young extension > knee osteoarthritis at 30-47% stride) and ankle (young plantar flexion > older healthy at 62-65% stride). Group-by-tool interactions occurred at the hip (61-63% stride). Significant tool-by-speed interactions were found, with hip and knee flexion increasing more for MoCap than IMU data with speed (hip: 12-15% stride, knee: 60-63% stride). While MoCap- and IMU-derived kinematics differed, our results suggested that the tools similarly detected clinically meaningful differences in gait. Results of the current study suggest that IMU-derived kinematics with OpenSense may enable the valid and reliable evaluation of gait in real-world, unobserved settings.
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- 2022
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37. Impacts of Positional Error on Spatial Regression Analysis: A Case Study of Address Locations in Syracuse, New York.
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Daniel A. Griffith, Marco Millones, Matthew Vincent, David L. Johnson 0002, and Andrew Hunt
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- 2007
- Full Text
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38. Estimating the minimum distance of large-block turbo codes using iterative multiple-impulse methods.
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Stewart Crozier, Paul Guinand, and Andrew Hunt
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- 2007
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39. A prosodic recognition module based on linear discriminant analysis.
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Andrew Hunt
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- 1994
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40. A generalised model for utilising prosodic information in continuous speech recognition.
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Andrew Hunt
- Published
- 1994
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41. A high-throughput, automated, cell-free expression and screening platform for antibody discovery
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Danielle J. Yoesep, Antje Krüger, Weston Kightlinger, Michael C. Jewett, Bastian Vögeli, and Andrew Hunt
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Rapid identification ,Dna template ,Workflow ,biology ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,biology.protein ,Cell free ,Computational biology ,Antibody ,Throughput (business) ,Antibody fragments - Abstract
Antibody discovery is bottlenecked by the individual expression and evaluation of antigen-specific hits. Here, we address this gap by developing an automated workflow combining cell-free DNA template generation, protein synthesis, and high-throughput binding measurements of antibody fragments in a process that takes hours rather than weeks. We apply this workflow to 119 published SARS-CoV-2 neutralizing antibodies and demonstrate rapid identification of the most potent antibody candidates.
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- 2021
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42. Time Interval to Initiation of Whole-Brain Radiation Therapy in Patients With Small Cell Lung Cancer With Brain Metastasis
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Waqar Haque, Neil Chevli, Jun Zhang, Bin S. Teh, Jay A. Messer, Andrew M. Farach, Eric H. Bernicker, E. Brian Butler, Suporn Sukpraprut-Braaten, and Andrew Hunt
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Oncology ,medicine.medical_specialty ,business.industry ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Medical physics. Medical radiology. Nuclear medicine ,Internal medicine ,medicine ,Interval (graph theory) ,Scientific Article ,Radiology, Nuclear Medicine and imaging ,In patient ,Non small cell ,business ,Whole brain radiation therapy ,RC254-282 ,Brain metastasis - Abstract
Purpose: Patients with small cell lung cancer (SCLC) who have brain metastases require whole-brain radiation therapy (WBRT). When there is no emergent indication for WBRT, patients may receive systemic therapy first and WBRT afterward. In scenarios when systemic therapy is initiated first, it has not been previously investigated whether delaying WBRT is harmful. Methods and Materials: The National Cancer Database was queried (2004-2016) for patients with SCLC with brain metastases who received 30 Gy in 10 fractions of WBRT. Patients were divided into groups based on whether they received early WBRT (3-14 days after initiation of chemotherapy) or late WBRT (15-90 days after initiation of chemotherapy). Demographic and clinicopathologic categorical variables were compared between those who had early WBRT (3-14 days) and those who had late WBRT (15-90 days). Factors predictive for late WBRT were determined. Overall survival (OS), which was defined as days from diagnosis to death, was evaluated and variables prognostic for OS were determined. Results: A total of 1082 patients met selection criteria; 587 (54%) had early WBRT and 495 (46%) received late WBRT. Groups were similarly distributed aside from days from initiating chemotherapy to initiating WBRT (P < .001). The early WBRT group had a median of 7 days (interquartile range [IQR], 5-10 days) from initiating chemotherapy to initiating WBRT and the late WBRT group had a median of 34 days (IQR, 21-57 days). On binary logistic regression analysis, a longer time interval between diagnosis and the start of systemic therapy was predictive for later WBRT. Median OS was 8.7 months for early WBRT and 7.5 months for late WBRT (hazard ratio [HR], 1.165; P = .008). Early WBRT (P = .02), female sex (P = .045), and private insurance (P = .04) were favorable prognostic factors for OS on multivariable analysis, whereas older age (P = .006) was an unfavorable prognostic factor. Conclusions: Patients with SCLC and brain metastases who received early WBRT were found to have a modest improvement in OS compared with patients who received late WBRT. These findings suggest that early WBRT should be offered to patients who have brain metastases, even in the absence of an indication for emergent WBRT.
- Published
- 2021
43. Utilising prosody to perform syntactic disambiguation.
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Andrew Hunt
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- 1993
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44. We Begin Bombing in Five Minutes
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Andrew Hunt
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- 2021
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45. Metal-Responsive Regulation of Enzyme Catalysis using Genetically Encoded Chemical Switches
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Jared C. Lewis, Benoît Roux, Andrew Hunt, Kosuke Seki, Bingqing Liu, Yasmine S. Zubi, Michael C. Jewett, and Ying Li
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chemistry.chemical_classification ,Serine protease ,Cell-free protein synthesis ,Multidisciplinary ,biology ,Chemistry ,Allosteric regulation ,General Physics and Astronomy ,General Chemistry ,Protein engineering ,Computational biology ,General Biochemistry, Genetics and Molecular Biology ,Enzyme catalysis ,Synthetic biology ,Enzyme ,biology.protein ,Luciferase - Abstract
Dynamic control over protein function is a central challenge in synthetic biology. To address this challenge, we describe the development of an integrated computational and experimental workflow to incorporate a metal-responsive chemical switch into proteins. Pairs of bipyridinylalanine (BpyAla) residues are genetically encoded into two structurally distinct enzymes, a serine protease and firefly luciferase, so that metal coordination biases the conformations of these enzymes, leading to reversible control of activity. Computational analysis and molecular dynamics simulations are used to rationally guide BpyAla placement, significantly reducing experimental workload, and cell-free protein synthesis coupled with high-throughput experimentation enable rapid prototyping of variants. Ultimately, this strategy yields enzymes with a robust 20-fold dynamic range in response to divalent metal salts over 24 on/off switches, demonstrating the potential of this approach. We envision that this strategy of genetically encoding chemical switches into enzymes will complement other protein engineering and synthetic biology efforts, enabling new opportunities for applications where precise regulation of protein function is critical.
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- 2021
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46. Detecting bubble rise in liquid nitrogen using Electrical Capacitance Tomography
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Philipp Behruzi, Richard Foster-Turner, and Andrew Hunt
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Materials science ,business.industry ,Bubble ,Optoelectronics ,Electrical capacitance tomography ,Liquid nitrogen ,business - Published
- 2021
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47. Multivalent designed proteins protect against SARS-CoV-2 variants of concern
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David Veesler, James Brett Case, Sean P. J. Whelan, Benjamin S. Freedman, Hsien-Wei Yeh, Ajasja Ljubetič, Hannele Ruohola-Baker, Barry R. Lutz, Louisa Helms, Bastain Vogeli, Yan Ting Zhao, Laura A. VanBlargan, Baoling Ying, David Baker, Natasha I. Edman, Jesse D. Bloom, Natasha M. Kafai, Antje Kruger-gericke, Lauren Carter, Adam L. Bailey, Cameron M. Chow, John E. Bowen, George Ueda, Shally Saini, Amin Addetia, Inna Goreshnik, Michael Gale, Longxing Cao, Scott E. Boyken, Rita E. Chen, Andrew Hunt, Lisa Kozodoy, Kejia Wu, Michael S. Diamond, Wadim L. Matochko, Tien-Ying Hsiang, Michael C. Jewett, Young-Jun Park, Alexandra C. Walls, Lance Stewart, Rashmi Ravichandran, Zhuoming Liu, Christy Ann Thomson, Tyler N. Starr, Nuttada Panpradist, and Lydia Green
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2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,SARS-CoV-2 ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pandemic preparedness ,Cryoelectron Microscopy ,COVID-19 ,Computational biology ,Biology ,Antibodies, Viral ,Antibodies, Neutralizing ,Article ,Mice ,Spike Glycoprotein, Coronavirus ,Ic50 values ,Animals ,Humans - Abstract
Escape variants of SARS-CoV-2 are threatening to prolong the COVID-19 pandemic. To address this challenge, we developed multivalent protein-based minibinders as potential prophylactic and therapeutic agents. Homotrimers of single minibinders and fusions of three distinct minibinders were designed to geometrically match the SARS-CoV-2 spike (S) trimer architecture and were optimized by cell-free expression and found to exhibit virtually no measurable dissociation upon binding. Cryo-electron microscopy (cryoEM) showed that these trivalent minibinders engage all three receptor binding domains on a single S trimer. The top candidates neutralize SARS-CoV-2 variants of concern with IC50 values in the low pM range, resist viral escape, and provide protection in highly vulnerable human ACE2-expressing transgenic mice, both prophylactically and therapeutically. Our integrated workflow promises to accelerate the design of mutationally resilient therapeutics for pandemic preparedness., One-Sentence Summary: We designed, developed, and characterized potent, trivalent miniprotein binders that provide prophylactic and therapeutic protection against emerging SARS-CoV-2 variants of concern.
- Published
- 2021
48. New Insights on the Wall Structure of the Albian-Cenomanian (Cretaceous) Agglutinated Foraminiferal Species Sculptobaculitesgoodlandensis (Cushman et Alexander, 1930) from North-Central Texas, USA
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J. M. Rashall, Galina P. Nestell, Merlynd K. Nestell, and Andrew Hunt
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Calcite ,Cement ,chemistry.chemical_compound ,chemistry ,North central ,Geochemistry ,Paleontology ,Cenomanian ,Test (biology) ,Quartz ,Cretaceous ,Geology - Abstract
The agglutinated foraminiferal species Sculptobaculitesgoodlandensis has been studied to determine the composition of the cement and grains that make up the test wall. Elemental mapping of the internal structure reveals a layered wall with quartz grains in calcitic cement on the edges of the wall and an inner, calcitic layer of mixed detrital calcareous grains and fine-grained calcite, presumed to be secreted calcitic cement.
- Published
- 2019
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49. A dynamic linear model for heteroscedastic LDA under class imbalance
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James Brusey, Kojo Sarfo Gyamfi, Andrew Hunt, and Elena Gaura
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0209 industrial biotechnology ,Heteroscedasticity ,Receiver operating characteristic ,Computer science ,Cognitive Neuroscience ,Word error rate ,Linear classifier ,02 engineering and technology ,Bayes classifier ,Covariance ,Linear discriminant analysis ,Computer Science Applications ,Support vector machine ,Bayes' theorem ,ComputingMethodologies_PATTERNRECOGNITION ,020901 industrial engineering & automation ,Binary classification ,Artificial Intelligence ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Algorithm - Abstract
Linear Discriminant Analysis (LDA) yields the optimal Bayes classifier for binary classification for normally distributed classes with equal covariance. To improve the performance of LDA, heteroscedastic LDA (HLDA) that removes the equal covariance assumption has been developed. In this paper, we show using first and second-order optimality conditions that the existing approaches either have no principled computational procedure for optimal parameter selection, or underperform in terms of the accuracy of classification and the area under the receiver operating characteristics curve (AUC) under class imbalance. Using the same optimality conditions, we then derive a dynamic Bayes optimal linear classifier for heteroscedastic LDA that is optimised via an efficient iterative procedure, which is robust against class imbalance. Experimental work is conducted on two artificial and eight real-world datasets. Our results show that the proposed algorithm compares favourably with the existing heteroscedastic LDA procedures as well as the linear support vector machine (SVM) in terms of the error rate, but is superior to all the algorithms in terms of the AUC under class imbalance. The fast training time of the proposed algorithm also encourages its use for large-data applications that show high incidence of class imbalance, such as in human activity recognition.
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- 2019
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50. Identification of horizontal slug flow structures for application in selective cross-correlation metering
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Andrew Hunt, Ross Drury, and James Brusey
- Subjects
Work (thermodynamics) ,Materials science ,Superficial velocity ,Cross-correlation ,Front (oceanography) ,Electrical capacitance tomography ,Mechanics ,Slug flow ,Computer Science Applications ,Modeling and Simulation ,Metering mode ,Tomography ,Electrical and Electronic Engineering ,Instrumentation - Abstract
Accurate metering of slug flows is important in many industries that handle multiphase products. For the oil and gas industry the harsh environmental conditions mean that non-invasive and non-intrusive instruments are preferred. Cross-correlation meters, particularly those based on electrical tomography, offer a potential solution to this problem but sufficient accuracy has proved difficult to achieve, with the primary issue being that the measurement is dominated by the motion of interfaces rather than the bulk fluid. In the work reported here, results are presented for flows of oil and nitrogen gas in a horizontal pipe of diameter 10.2 cm. Superficial velocities of liquid and gas range from 1 m/s to 3 m/s and 0.4–3 m/s respectively. By analysing the structures of liquid slugs via tomography, it is found that three significantly different slug front structures occur. The high-speed and spatial resolution of Electrical Capacitance Tomography (ECT) enables independent measurement of individual slug fronts and tail as well as average slug velocity. Based on detailed measurements of slug structures and velocity profiles, we go on to show that using differential-based cross-correlation and the average velocity of slug front and tail, an overall accuracy of better than + / − 5 % is achieved for estimation of the mixture superficial velocity. This is an equivalent level of accuracy to that obtained using intrusive methods such as optical fibre probes, which are less suitable for oil and gas applications.
- Published
- 2019
- Full Text
- View/download PDF
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