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1. Inversion of Phytoplankton Pigment Vertical Profiles from Satellite Data Using Machine Learning

Author

Agathe Puissant, Roy El Hourany, Anastase Alexandre Charantonis, Chris Bowler, and Sylvie Thiria

Subjects
machine learning, inversion, ocean colour, phytoplankton, pigment vertical profile, deep chlorophyll maximum, Science
Abstract

Observing the vertical dynamic of phytoplankton in the water column is essential to understand the evolution of the ocean primary productivity under climate change and the efficiency of the CO2 biological pump. This is usually made through in-situ measurements. In this paper, we propose a machine learning methodology to infer the vertical distribution of phytoplankton pigments from surface satellite observations, allowing their global estimation with a high spatial and temporal resolution. After imputing missing values through iterative completion Self-Organizing Maps, smoothing and reducing the vertical distributions through principal component analysis, we used a Self-Organizing Map to cluster the reduced profiles with satellite observations. These referent vector clusters were then used to invert the vertical profiles of phytoplankton pigments. The methodology was trained and validated on the MAREDAT dataset and tested on the Tara Oceans dataset. The different regression coefficients R2 between observed and estimated vertical profiles of pigment concentration are, on average, greater than 0.7. We could expect to monitor the vertical distribution of phytoplankton types in the global ocean.

Published
2021
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16. Fusion of rain radar images and wind forecasts in adeep learning model applied to rain nowcasting

Author

Arthur Filoche, Dominique Béréziat, Anastase Alexandre Charantonis, Julien Brajard, and Vincent Bouget

Subjects
Fusion, Nowcasting, Radar imaging, Environmental science, Remote sensing
Abstract

Short or mid-term rainfall forecasting is a major task with several environmental applications such as agricultural management or flood risks monitoring. Existing data-driven approaches, especially deep learning models, have shown significant skill at this task, using only rainfall radar images as inputs. In order to determine whether using other meteorological parameters such as wind would improve forecasts, we trained a deep learning model on a fusion of rainfall radar images and wind velocity produced by a weather forecast model. The network was compared to a similar architecture trained only on radar data, to a basic persistence model and to an approach based on optical flow. Our network outperforms by 8% the F1-score calculated for the optical flow on moderate and higher rain events for forecasts at a horizon time of 30 minutes. Furthermore, it outperforms by 7% the same architecture trained using only rainfall radar images. Merging rain and wind data has also proven to stabilize the training process and enabled significant improvement especially on the difficult-to-predict high precipitation rainfalls. These results can also be found in Bouget, V., Béréziat, D., Brajard, J., Charantonis, A., & Filoche, A. (2020). Fusion of rain radar images and wind forecasts in a deep learning model applied to rain nowcasting. arXiv preprint arXiv:2012.05015

Published
2021
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17. Fusion of rain radar images and wind forecasts in a deep learning model applied to rain nowcasting

Author

Julien Brajard, Arthur Filoche, Vincent Bouget, Anastase Alexandre Charantonis, Dominique Béréziat, Performance et Qualité des Algorithmes Numériques (PEQUAN), LIP6, Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Nansen Environmental and Remote Sensing Center [Bergen] (NERSC), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut de Recherche pour le Développement (IRD)-Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-École normale supérieure - Paris (ENS-PSL), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)

Subjects
Signal Processing (eess.SP), FOS: Computer and information sciences, Computer Science - Machine Learning, Meteorology, Nowcasting, Science, Optical flow, radar data, FOS: Physical sciences, rain nowcasting, 02 engineering and technology, Wind speed, law.invention, Machine Learning (cs.LG), law, 020204 information systems, Radar imaging, 0202 electrical engineering, electronic engineering, information engineering, FOS: Electrical engineering, electronic engineering, information engineering, [INFO]Computer Science [cs], Precipitation, Radar, Electrical Engineering and Systems Science - Signal Processing, deep learning, business.industry, Deep learning, Training (meteorology), Physics - Atmospheric and Oceanic Physics, 13. Climate action, [INFO.INFO-TI]Computer Science [cs]/Image Processing [eess.IV], Atmospheric and Oceanic Physics (physics.ao-ph), General Earth and Planetary Sciences, Environmental science, 020201 artificial intelligence & image processing, Artificial intelligence, business
Abstract

Short- or mid-term rainfall forecasting is a major task with several environmental applications such as agricultural management or flood risk monitoring. Existing data-driven approaches, especially deep learning models, have shown significant skill at this task, using only rainfall radar images as inputs. In order to determine whether using other meteorological parameters such as wind would improve forecasts, we trained a deep learning model on a fusion of rainfall radar images and wind velocity produced by a weather forecast model. The network was compared to a similar architecture trained only on radar data, to a basic persistence model and to an approach based on optical flow. Our network outperforms by 8% the F1-score calculated for the optical flow on moderate and higher rain events for forecasts at a horizon time of 30 min. Furthermore, it outperforms by 7% the same architecture trained using only rainfall radar images. Merging rain and wind data has also proven to stabilize the training process and enabled significant improvement especially on the difficult-to-predict high precipitation rainfalls., In press in Remote Sensing (MDPI)

Published
2020
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18. The 2020 Climate Informatics Hackathon: Generating Nighttime Satellite Imagery from Infrared Observations

Author

Redouane Lguensat, Anastase Alexandre Charantonis, William K. Jones, Duncan Watson-Parris, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), and ANR-17-MPGA-0009,CZ-TOP,Water, reactions and isotopes in the Critical Zone(2017)

Subjects
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere, Computer science, 020204 information systems, Informatics, 0202 electrical engineering, electronic engineering, information engineering, 020201 artificial intelligence & image processing, Satellite imagery, 02 engineering and technology, [SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces, environment, Data science, Data preparation, ComputingMilieux_MISCELLANEOUS
Abstract

The 2020 Climate Informatics hackathon virtually gathered 40 participants to work on techniques for the generation of nighttime satellite imagery from infrared observations. In this paper, we discuss the data preparation process, the methods used by the participants, and the results of the privately held competition. A public version of the competition provides freely the data and is open on the Codalab platform to foster further research on this direction, it can be found here: https://competitions.codalab.org/competitions/26644.

Published
2020
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19. Learning missing part of physics-based models within a variational data assimilation scheme

Author

Arthur Filoche, Dominique Béréziat, Anastase Alexandre Charantonis, and Julien Brajard

Subjects
Scheme (programming language), Data assimilation, Computer science, Physics based, computer, Algorithm, computer.programming_language
Abstract

The analogy between data assimilation and machine learning has already been shown and is still being investigated to address the problem of improving physics-based models. Even though both techniques learn from data, machine learning focuses on inferring model parameters while data assimilation concentrates on hidden system state estimation with the help of a dynamical model. Also, neural networks and more precisely ResNet-like architectures can be seen as dynamical systems and numerical schemes, respectively. They are now considered state of the art in a vast amount of tasks involving spatio-temporal forecasting. But to train such networks, one needs dense and representative data which is rarely the case in earth sciences. At the same time, data assimilation offers a proper Bayesian framework allowing to learn from partial, noisy and indirect observations. Thus, each of this field can profit from the other by providing either a learnable class of dynamical models or dense data sets.In this work, we benefit from powerful and flexible tools provided by the deep learning community based on automatic differentiation that are clearly suitable for variational data assimilation, avoiding explicit adjoint modelling. We use a hybrid model divided into 2 terms. The first term is a numerical scheme that comes from the discretisation of physics-based equations, the second is a convolutional neural network that represents the unresolved part of the dynamics. From the Data Assimilation point of view, our network can be seen as a particular parametrisation of the model error. We then jointly learn this parameterisation and estimate hidden system states within a variational data assimilation scheme. Indirectly, the issue of incorporating physical knowledge into machine learning models is also addressed. We show that the hybrid model improves forecast skill compared to traditional data assimilation techniques. The generalisation of the method on different models and data will also be discussed.

Published
2020
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20. Using satellite data to estimate partial pressure of CO2in the Baltic Sea

Author

Anastase Alexandre Charantonis, Anna Rutgersson, and Gaëlle Parard

Subjects
0106 biological sciences, Atmospheric Science, Chlorophyll a, 010504 meteorology & atmospheric sciences, Soil Science, Aquatic Science, 01 natural sciences, chemistry.chemical_compound, Range (statistics), 14. Life underwater, 0105 earth and related environmental sciences, Water Science and Technology, Ecology, 010604 marine biology & hydrobiology, Paleontology, Primary production, Forestry, Partial pressure, Sea surface temperature, Colored dissolved organic matter, chemistry, Baltic sea, 13. Climate action, Climatology, Environmental science, Surface water
Abstract

In this study we focused on estimating the pressure partial of CO2 (pCO(2)) in the entire Baltic Sea which can be considered a coastal area in its entirety. We used the self-organizing multiple linear output (SOMLO) method to estimate the ocean surface pCO(2) in the Baltic Sea from the remotely sensed sea surface temperature, chlorophyll a, colored dissolved organic matter, net primary production, and mixed-layer depth. Uncertainties in the estimates include sparsity of in situ data used to train the algorithms, in particular, for some sectors and seasons. For this application we divided the Baltic Sea in four basins. When comparing the results obtained with this division to those obtained in previous studies, we notice a decrease in the root-mean-square error ( 0.96) between them. The outputs of this research have a horizontal resolution of 4km and cover the 1998-2011 period. For the first time, a climatological mean distribution of surface water pCO(2) over the Baltic Sea was calculated based on the SOMLO method with a mean pCO(2) of 368.3100atm, and a range of 234-514atm. The seasonal variability is similar throughout the Baltic Sea, being high in winter and low in summer.

Published
2016
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21. Remote sensing the sea surface CO2 of the Baltic Sea using the SOMLO methodology

Author

Anastase Alexandre Charantonis, Gaëlle Parard, and A. Rutgerson

Subjects
0106 biological sciences, 010504 meteorology & atmospheric sciences, Mean squared error, 010604 marine biology & hydrobiology, Primary production, Missing data, 01 natural sciences, Data set, Sea surface temperature, 13. Climate action, Climatology, Linear regression, Environmental science, Satellite, 14. Life underwater, Image resolution, Ecology, Evolution, Behavior and Systematics, 0105 earth and related environmental sciences, Earth-Surface Processes, Remote sensing
Abstract

Studies of coastal seas in Europe have noted the high variability of the CO2 system. This high variability, generated by the complex mechanisms driving the CO2 fluxes, complicates the accurate estimation of these mechanisms. This is particularly pronounced in the Baltic Sea, where the mechanisms driving the fluxes have not been characterized in as much detail as in the open oceans. In addition, the joint availability of in situ measurements of CO2 and of sea-surface satellite data is limited in the area. In this paper, we used the SOMLO (self-organizing multiple linear output; Sasse et al., 2013) methodology, which combines two existing methods (i.e. self-organizing maps and multiple linear regression) to estimate the ocean surface partial pressure of CO2 (pCO2) in the Baltic Sea from the remotely sensed sea surface temperature, chlorophyll, coloured dissolved organic matter, net primary production, and mixed-layer depth. The outputs of this research have a horizontal resolution of 4 km and cover the 1998–2011 period. These outputs give a monthly map of the Baltic Sea at a very fine spatial resolution. The reconstructed pCO2 values over the validation data set have a correlation of 0.93 with the in situ measurements and a root mean square error of 36 μatm. Removing any of the satellite parameters degraded this reconstructed CO2 flux, so we chose to supply any missing data using statistical imputation. The pCO2 maps produced using this method also provide a confidence level of the reconstruction at each grid point. The results obtained are encouraging given the sparsity of available data, and we expect to be able to produce even more accurate reconstructions in coming years, given the predicted acquisition of new data.

Published
2015
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22. Construction of Multi-Year Time-Series Profiles of Suspended Particulate Inorganic Matter Concentrations Using Machine Learning Approach

Author

Frédéric Jourdin, Khalil Yala, Aurélie Rivier, Francis Gohin, Thierry Garlan, Nicolas Guillou, Sylvie Thiria, Fouad Badran, P. R. Renosh, Anastase Alexandre Charantonis, Fabien Leckler, Service Hydrographique et Océanographique de la Marine (SHOM), Ministère de la Défense, Centre d'études et de recherche en informatique et communications (CEDRIC), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE), Centre d'Etudes et d'Expertise sur les Risques, l'Environnement, la Mobilité et l'Aménagement (Cerema), Processus de la variabilité climatique tropicale et impacts (PARVATI), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre d'Etudes et d'Expertise sur les Risques, l'Environnement, la Mobilité et l'Aménagement - Equipe-projet HA (Cerema Equipe-projet HA), Dynamiques de l'Environnement Côtier (DYNECO), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Laboratoire d'Ecologie Pélagique (PELAGOS), Dynamiques des Écosystèmes Côtiers (DYNECO), and Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)

Subjects
0106 biological sciences, Self-organizing map, 010504 meteorology & atmospheric sciences, Science, self-organizing maps, [PHYS.PHYS.PHYS-GEO-PH]Physics [physics]/Physics [physics]/Geophysics [physics.geo-ph], Forcing (mathematics), Regional Ocean Modeling System, Machine learning, computer.software_genre, 01 natural sciences, Hidden Markov Model, suspended particulate inorganic matter, machine learning, English Channel, ROMS, Robustness (computer science), 14. Life underwater, Hidden Markov model, 0105 earth and related environmental sciences, business.industry, 010604 marine biology & hydrobiology, Observable, Particulates, 13. Climate action, General Earth and Planetary Sciences, Environmental science, Artificial intelligence, business, computer, Communication channel
Abstract

Hydro-sedimentary numerical models have been widely employed to derive suspended particulate matter (SPM) concentrations in coastal and estuarine waters. These hydro-sedimentary models are computationally and technically expensive in nature. Here we have used a computationally less-expensive, well-established methodology of self-organizing maps (SOMs) along with a hidden Markov model (HMM) to derive profiles of suspended particulate inorganic matter (SPIM). The concept of the proposed work is to benefit from all available data sets through the use of fusion methods and machine learning approaches that are able to process a growing amount of available data. This approach is applied to two different data sets entitled “Hidden” and “Observable”. The hidden data are composed of 15 months (27 September 2007 to 30 December 2008) of hourly SPIM profiles extracted from the Regional Ocean Modeling System (ROMS). The observable data include forcing parameter variables such as significant wave heights ( H s and H s 50 (50 days)) from the Wavewatch 3-HOMERE database and barotropic currents ( U b a r and V b a r ) from the Iberian–Biscay–Irish (IBI) reanalysis data. These observable data integrate hourly surface samples from 1 February 2002 to 31 December 2012. The time-series profiles of the SPIM have been derived from four different stations in the English Channel by considering 15 months of output hidden data from the ROMS as a statistical representation of the ocean for ≈11 years. The derived SPIM profiles clearly show seasonal and tidal fluctuations in accordance with the parent numerical model output. The surface SPIM concentrations of the derived model have been validated with satellite remote sensing data. The time series of the modeled SPIM and satellite-derived SPIM show similar seasonal fluctuations. The ranges of concentrations for the four stations are also in good agreement with the corresponding satellite data. The high accuracy of the estimated 25 h average surface SPIM concentrations (normalized root-mean-square error— N R M S E of less than 16%) is the first step in demonstrating the robustness of the method.

Published
2017
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23. The Potential of using Remote Sensing data to estimate Air–Sea CO2 exchange in the Baltic Sea

Author

Gaëlle Parard, Anna Rutgersson, Sindu Raj Parampil, and Anastase Alexandre Charantonis

Abstract

In this article, we present the first climatological map of air–sea CO2 flux over the Baltic Sea, based on remote-sensing data: satellite imaging derived estimates of pCO2 and remotesensed wind estimates. The pCO2 estimates estimated using self-organizing maps classifications along with class-specific linear regressions (SOMLO methodology). The estimates have a spatial resolution of 4-km both in latitude and longitude and a monthly temporal resolution from 1998 to 2011. The CO2 fluxes are estimated using two types of wind products, i.e. reanalysis winds and satellite wind products, the higher-resolution wind product generally leading to higher-amplitude fluxes estimations. Furthermore, the CO2 fluxes were also estimated using two methods: the method of Wanninkhof et al. (2012) and the method of Rutgersson et al. (2010), i.e. reanalysis winds and satellite wind products, the higher-resolution wind product generally resulting in higheramplitude fluxes. The seasonal variation in fluxes reflects the seasonal variation in pCO2 and stays similar throughout the Baltic Sea, with high CO2 emissions in winter and high CO2 uptake in summer. All basins act as a source for the atmosphere, with a higher degree of emission in the southern regions (mean source of 1.6 mmol m−2 d−1 for the South Basin and 0.9 for the Central Basin) than in the northern regions (mean source of 0.1 mmol m−2 d−1 and the coastal areas act as a larger sink (annual uptake of −4.2 mmol m−2 d−1 than does the open sea (−4 mmol m−2 d−1). In this study, we find that the Baltic Sea acts as a small source of 1.2 mmol m−2 d−1 on average and that annual uptake has increased from 1998 to 2012.

Published
2017
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24. Reconstruction of Subsurface Velocities From Satellite Observations Using Iterative Self-Organizing Maps

Author

Christopher C. Chapman, Anastase Alexandre Charantonis, Processus de couplage à Petite Echelle, Ecosystèmes et Prédateurs Supérieurs (PEPS), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Services répartis, Architectures, MOdélisation, Validation, Administration des Réseaux (SAMOVAR), Institut Mines-Télécom [Paris] (IMT)-Télécom SudParis (TSP), Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636))

Subjects
Surface (mathematics), Self-organizing map, 010504 meteorology & atmospheric sciences, Mean squared error, 0211 other engineering and technologies, FOS: Physical sciences, [PHYS.PHYS.PHYS-GEO-PH]Physics [physics]/Physics [physics]/Geophysics [physics.geo-ph], 02 engineering and technology, 01 natural sciences, Physics - Geophysics, remote sensing, Oceans, 14. Life underwater, Electrical and Electronic Engineering, Argo, 021101 geological & geomatics engineering, 0105 earth and related environmental sciences, Probability and statistics, Geotechnical Engineering and Engineering Geology, Geodesy, Geophysics (physics.geo-ph), Sea surface temperature, Physics - Atmospheric and Oceanic Physics, Physics - Data Analysis, Statistics and Probability, Atmospheric and Oceanic Physics (physics.ao-ph), self-organizing feature maps, Satellite, Surface reconstruction, Geology, Data Analysis, Statistics and Probability (physics.data-an)
Abstract

In this letter a new method based on modified self-organizing maps is presented for the reconstruction of deep ocean current velocities from surface information provided by satellites. This method takes advantage of local correlations in the data-space to improve the accuracy of the reconstructed deep velocities. Unlike previous attempts to reconstruct deep velocities from surface data, our method makes no assumptions regarding the structure of the water column, nor the underlying dynamics of the flow field. Using satellite observations of surface velocity, sea-surface height and sea-surface temperature, as well as observations of the deep current velocity from autonomous Argo floats to train the map, we are able to reconstruct realistic high--resolution velocity fields at a depth of 1000m. Validation reveals extremely promising results, with a speed root mean squared error of ~2.8cm/s, a factor more than a factor of two smaller than competing methods, and direction errors consistently smaller than 30 degrees. Finally, we discuss the merits and shortcomings of this methodology and its possible future applications., Submitted to IEEE geoscience and remote sensing letters

Published
2017
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25. PROFHMM_UNC: Introducing a Priori Knowledge for Completing Missing Values of Multidimensional Time-Series

Author

S. Thiria, Anastase Alexandre Charantonis, and F. Badran

Subjects
Self-organizing map, Series (mathematics), Discretization, Computer science, Process (computing), Missing data, computer.software_genre, Viterbi algorithm, symbols.namesake, symbols, A priori and a posteriori, Data mining, Hidden Markov model, computer
Abstract

We present a new method for estimating missing values or correcting unreliable observed values of time dependent physical fields. This method, is based on Hidden Markov Models and Self-Organizing Maps, and is named PROFHMM_UNC. PROFHMM_UNC combines the knowledge of the physical process under study provided by an already known dynamic model and the truncated time series of observations of the phenomenon. In order to generate the states of the Hidden Markov Model, Self-Organizing Maps are used to discretize the available data. We make a modification to the Viterbi algorithm that forces the algorithm to take into account a priori information on the quality of the observed data when selecting the optimum reconstruction. The validity of PROFHMM_UNC was endorsed by performing a twin experiment with the outputs of the ocean biogeochemical NEMO-PISCES model.

Published
2014
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26. Measuring in water suspended particulate inorganic matter by statistical learning of ocean colour satellite data with models of ocean currents

Author

Anastase Alexandre Charantonis, Pannimpullath Renosh, Khalil Yala, Frédéric Jourdin, Fouad Badran, Sylvie Thiria, Nicolas Guillou, Télécom SudParis (TSP), Service Hydrographique et Océanographique de la Marine (SHOM), Ministère de la Défense, Centre d'études et de recherche en informatique et communications (CEDRIC), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), Processus de la variabilité climatique tropicale et impacts (PARVATI), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre d'Etudes et d'Expertise sur les Risques, l'Environnement, la Mobilité et l'Aménagement - Equipe-projet HA (Cerema Equipe-projet HA), Centre d'Etudes et d'Expertise sur les Risques, l'Environnement, la Mobilité et l'Aménagement (Cerema), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636))

Subjects
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere, [PHYS.PHYS.PHYS-AO-PH]Physics [physics]/Physics [physics]/Atmospheric and Oceanic Physics [physics.ao-ph], [MATH.MATH-GM]Mathematics [math]/General Mathematics [math.GM], [SDE.IE]Environmental Sciences/Environmental Engineering, [PHYS.MPHY]Physics [physics]/Mathematical Physics [math-ph], [PHYS.MECA.MEFL]Physics [physics]/Mechanics [physics]/Fluid mechanics [physics.class-ph], [STAT.CO]Statistics [stat]/Computation [stat.CO], [INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation, ComputingMilieux_MISCELLANEOUS, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography
Abstract

International audience

Published
2016

27. Completion of a Sparse GLIDER Database Using Multi-iterative Self-Organizing Maps (ITCOMP SOM)

Author

Fabrizio D'Ortenzio, Pierre Testor, Laurent Mortier, Sylvie Thiria, Anastase Alexandre Charantonis, Processus de la variabilité climatique tropicale et impacts (PARVATI), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre d'études et de recherche en informatique et communications (CEDRIC), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), Variabilité de l'Océan et de la Glace de mer (VOG), Unité de Mécanique (UME), École Nationale Supérieure de Techniques Avancées (ENSTA Paris), Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), European Project: 284321,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2011-1,GROOM(2011), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), and Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)

Subjects
Self-organizing map, Multi-dimensional data, 010504 meteorology & atmospheric sciences, Mean squared error, Iterative method, Computer science, 0211 other engineering and technologies, Temperature salinity diagrams, [PHYS.PHYS.PHYS-GEO-PH]Physics [physics]/Physics [physics]/Geophysics [physics.geo-ph], 02 engineering and technology, computer.software_genre, Data completion, 01 natural sciences, ComputingMilieux_MISCELLANEOUS, Self-Organizing Maps, 021101 geological & geomatics engineering, 0105 earth and related environmental sciences, General Environmental Science, Eye of the Levantine, business.industry, Temperature profiles, Glider, Pattern recognition, Missing data, Salinity, Similarity function, Gliders, Salinity profiles, General Earth and Planetary Sciences, Artificial intelligence, Data mining, business, computer
Abstract

We present a novel approach named ITCOMP SOM that uses iterative self-organizing maps (SOM) to progressively reconstruct missing data in a highly correlated multidimensional dataset. This method was applied for the completion of a complex oceanographic data-set containing glider data from the EYE of the Levantine experiment of the EGO project. ITCOMP SOM provided reconstructed temperature and salinity profiles that are consistent with the physics of the phenomenon they sampled. A cross-validation test was performed and validated the approach, providing a root mean square error of providing a root mean square error of 0,042 °C for the reconstruction of the temperature profiles and 0,008 PSU for the simultaneous reconstruction of the salinity profiles.

Published
2015
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28. Retrieving the evolution of vertical profiles of Chlorophyll-a from satellite observations using Hidden Markov Models and Self-Organizing Topological Maps

Author

Anastase Alexandre Charantonis, Sylvie Thiria, Fouad Badran, Processus de la variabilité climatique tropicale et impacts (PARVATI), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre d'études et de recherche en informatique et communications (CEDRIC), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), and HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)

Subjects
Sequence, 010504 meteorology & atmospheric sciences, Mean squared error, Computer science, 0211 other engineering and technologies, Soil Science, Geology, [PHYS.PHYS.PHYS-GEO-PH]Physics [physics]/Physics [physics]/Geophysics [physics.geo-ph], 02 engineering and technology, Topology, 01 natural sciences, Distribution (mathematics), Satellite, 14. Life underwater, Computers in Earth Sciences, Hidden Markov model, ComputingMilieux_MISCELLANEOUS, 021101 geological & geomatics engineering, 0105 earth and related environmental sciences, Remote sensing
Abstract

We present a statistical method, denoted PROFHMM, to infer the evolution of the vertical profiles of oceanic biogeophysical variables from sea-surface data. This method makes use of discrete Hidden Markov Models whose states are defined through Self-Organizing Topological Maps. The Self-Organizing Topological Maps are used to provide the states of the Hidden Markov Model, as well as improve its parameters. After introducing the general principles of PROFHMM, we present the results obtained in a case study in which the evolution of the vertical profiles of Chlorophyll-a was inverted from sea-surface data. We applied PROFHMM for the reconstruction of the evolution of the vertical distribution of Chlorophyll-a at BATS, by training it on the numerical outputs of the NEMO-PISCES model, and reproducing the evolution of this model by using a sequence satellite observations. We obtained a root mean square error of 0.0399 ng/l for the validation year 2008.

Published
2015
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29. Construction of multi-year time series profiles of suspended particulate inorganic matter concentrations from highly dynamic coastal waters of the English Channel using self-organizing maps and hidden Markov model

Author

Pannimpullath Renosh, Frédéric Jourdin, Anastase Alexandre Charantonis, Khalil Yala, Fouad Badran, Sylvie Thiria, Nicolas Guillou, Francis Gohin, Service Hydrographique et Océanographique de la Marine (SHOM), Ministère de la Défense, Conservatoire National des Arts et Métiers [CNAM] (CNAM), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE), CEDRIC. Méthodes statistiques de data-mining et apprentissage (CEDRIC - MSDMA), Centre d'études et de recherche en informatique et communications (CEDRIC), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre d'Etudes et d'Expertise sur les Risques, l'Environnement, la Mobilité et l'Aménagement - Equipe-projet HA (Cerema Equipe-projet HA), Centre d'Etudes et d'Expertise sur les Risques, l'Environnement, la Mobilité et l'Aménagement (Cerema), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM)-Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-École normale supérieure - Paris (ENS Paris), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut de Recherche pour le Développement (IRD)-Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)

Subjects
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere, [PHYS.PHYS.PHYS-AO-PH]Physics [physics]/Physics [physics]/Atmospheric and Oceanic Physics [physics.ao-ph], [MATH.MATH-GM]Mathematics [math]/General Mathematics [math.GM], [SDE.IE]Environmental Sciences/Environmental Engineering, [PHYS.MPHY]Physics [physics]/Mathematical Physics [math-ph], [PHYS.MECA.MEFL]Physics [physics]/Mechanics [physics]/Fluid mechanics [physics.class-ph], [STAT.CO]Statistics [stat]/Computation [stat.CO], [INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation, ComputingMilieux_MISCELLANEOUS, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography
Abstract

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