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The Neotropical region hosts 4225 freshwater fish species, ranking first among the world's most diverse regions for freshwater fishes. Our NEOTROPICAL FRESHWATER FISHES data set is the first to produce a large-scale Neotropical freshwater fish inventory, covering the entire Neotropical region from Mexico and the Caribbean in the north to the southern limits in Argentina, Paraguay, Chile, and Uruguay. We compiled 185,787 distribution records, with unique georeferenced coordinates, for the 4225 species, represented by occurrence and abundance data. The number of species for the most numerous orders are as follows: Characiformes (1289), Siluriformes (1384), Cichliformes (354), Cyprinodontiformes (245), and Gymnotiformes (135). The most recorded species was the characid Astyanax fasciatus (4696 records). We registered 116,802 distribution records for native species, compared to 1802 distribution records for nonnative species. The main aim of the NEOTROPICAL FRESHWATER FISHES data set was to make these occurrence and abundance data accessible for international researchers to develop ecological and macroecological studies, from local to regional scales, with focal fish species, families, or orders. We anticipate that the NEOTROPICAL FRESHWATER FISHES data set will be valuable for studies on a wide range of ecological processes, such as trophic cascades, fishery pressure, the effects of habitat loss and fragmentation, and the impacts of species invasion and climate change. There are no copyright restrictions on the data, and please cite this data paper when using the data in publications.

Shallow coastal habitats are ruled by fluctuating environmental conditions, which lead to shifts in fish communities. Functional groups of habitat use and trophic strategy were used to address the responses of fish composition and diversity, since comparisons of rich tropical systems are often complex through species-based approaches. We hypothesized that fish groups will have specific affinities in response to the prevailing environmental conditions, especially those reflecting the prevalence of oceanic or estuarine conditions, where guilds of habitat use would perform better as indicators. Despite the importance of other environmental factors (i.e. temperature and transparency), salinity was the key structuring factor irrespective of the coastal lagoon. Although harbouring the greatest biomass of piscivores, the harsh environmental conditions at Araruama lagoon were related to low diversity. A great number of indicator species, typically of marine affinity, was found at the Saquarema lagoon, probably due to the continuous and broad connection to the sea leading to the predominance of euhaline conditions. Despite the presence of non-native species (i.e. Oreochromis niloticus), the Marica lagoon function as an important refuge for freshwater groups. Our results stressed the key role played by coastal lagoons of varied water conditions in supporting fish diversity at regional levels.

This study aimed to address the Ophiothela species distribution worldwide, report invasive populations, and investigate their association with benthic organisms through an extensive review of the scientific literature. All six Ophiothela species occur between latitudes 33o S and 38o N and, together, are dispersed across 75% of the marine realms. Spread throughout more than 6700 km of the Western Atlantic Ocean coastline, O. mirabilis is the only species recorded as invasive. Higher plasticity in substrate use was detected in invaded areas than in native ones, which indicates that substrate availability does not limit the invasive potential of O. mirabilis. The colonization affinity of Ophiothela species is high for Cnidaria species, irrespective of population origin. High densities (e.g., up to 2.8 brittle stars cm−2 per gorgonian surface) and opportunistic habitat colonization pattern found for O. mirabilis invasive populations suggest fast dispersion rates along the Atlantic coast. Therefore, the expansion of this species to nearby systems is likely, and the potential to damage native host species is high.

The intermediate disturbance hypothesis (IDH) has been thoroughly investigated, but much controversy has been found for supporting its assumptions, which rely largely on the nature of the disturbance, spatial scale, and biological predictors tested. In this paper, richness of native and non-native species along a suite of Neotropical aquatic ecosystems across a broad latitudinal and geographical range was used to test the IDH predictions. An extensive literature survey was performed to compile native species richness and the occurrence of several taxonomic groups listed as non-native for twenty-four coastal rivers and bays evenly distributed into three climatic zones (tropical, transitional, and subtropical). The climatic gradient was confirmed by NMDS and PERMANOVA, but IDH predictions were only significantly supported for native and total species richness in the coastal bays. The distribution patterns of non-native marine species showed a linear instead unimodal pattern of increase with latitudinal climatic gradient, but the responses are complex and dependent of many non-exclusive factors, such as the sampling effort per ecosystem and the potential interference of other disturbance gradients that should be further addressed to unravel the role of IDH for non-native species distribution.

Global inland water biodiversity is under mounting stress facing future scenarios of climate change, biological invasions, pollution, diversion, damming of rivers, and increase of water abstractions. Apart from having isolated effects, all these stressors threats act synergistically and thus pose additional emerging threats to biodiversity and ecosystem services. Native to Northern Europe, the nuisance and potential toxic dinoflagellate Ceratium furcoides (Levander) Langhans 1925 is a silent invader that blooms in freshwater systems; it has one of the most rapid spread rates globally. We propose a framework to determine the worldwide most vulnerable areas for the invasion by C. furcoides shortly (2041-2060) by combining future scenarios of climate change (a proxy for invasiveness) derived from ecological niche models with future dam construction data (a proxy for invasibility). The nine models applied in four future scenarios of greenhouse gas emission from Coupled Model Intercomparison Project Phase 6 showed a general increase in areas suitable for the invasion success of C. furcoides. High susceptibility overlapped with areas densely occupied by large and medium-size dams and future dam construction projects. Considering that C. furcoides can reproduce from a single cell, produces resistant stages, and has several strategies to cope with local environmental constraints, early detection protocols, and mitigation actions are urgently needed to avoid biodiversity declines related to this invader.

Peacock bass Cichla ocellaris is a piscivorous cichlid native from the Amazon and Orinoco river basins, which has been broadly introduced into tropical areas worldwide, leading to several adverse local effects. However, predictors of its invasibility and assessments of its ecological impacts over large spatial scales are still lacking. The importance of different environmental factors in explaining the relative abundance of peacock bass in 62 sites across South America (30 native and 32 invaded systems) was investigated. The impacts of peacock bass on fish assemblages were appraised, using years since introduction as a proxy of its cumulative impacts and modern statistical techniques, such as random forests, and negative binomial regression models. Random forests highlighted maximum depth, introduced status, and ecosystem type as the best predictors of the peacock bass relative abundance, which ranged 0.01–26.0%, increased with maximum depth, was highest in invaded reservoirs but decreased with depth in native riverine populations. Other factors such as climate or limnological features were less important in explaining C. ocellaris abundance, which did not vary markedly with years since introduction. Introduction year was not related to latitude but varied among hydrographic regions, indicating invasion pathways not linked to geographical proximity. Variation partitioning of different fish assemblage metrics showed that hydrographic region followed by limnological and reservoir features accounted for most explained variation, indicating a strong historical and local influence. Introduction time accounted for 5–8% of variation in species composition and diversity, independently of limnological features. Our results suggest that the ecological effects of introduced C. ocellaris on native fish fauna are likely but small compared to large geographical and environmental gradients. Although experiments and before-after designs are probably more sensitive in detecting the ecological impacts of invasive species, large-scale compilations of available data are more feasible and can provide invaluable information, especially for large-sized invaders that are often illegally introduced.

Guanabara Bay is located within one of the most populated areas in Brazil, still harbouring a great aquatic biodiversity and supporting important commercial fisheries despite the increased levels of human disturbances. Here, individual and simultaneous effects of water temperature, pH, and salinity on reef-associated and transient fish assemblages in a transitional marine-estuarine zone of Guanabara Bay were addressed. It was predicted that composition and structure of fish assemblages will respond differently to these environmental variables, depending on the species-specific degree of association with rocky substrates. A canonical correspondence analysis applied on all 83 fish species caught revealed that fish assemblages as a whole were mainly driven by salinity and pH, but with no clear trend of species association or seasonal responses. Canonical analysis of principal coordinates revealed a group composed only by reef-associated species, which was separated from a second group of only transient species, but some species of overlapping distribution were also detected (mixed group). Reef-associated species followed mostly a salinity gradient, whereas transient species responded to salinity and temperature, and those of the mixed group were ruled by salinity and pH. Generalized additive models indicated that, except for transient species, fish richness increased with the effects of estuarine waters from inner bay. Our study is the first to highlight the importance of a transitional zone in coastal bays, which can apparently increase the potential of sharing species among marine and estuarine areas, leading thus to positive effects on local biodiversity. We also stress the role of salinity as key structuring factor of the fish assemblages in tropical coastal bays, and its potential to be used, in conjunction with pH and temperature, as a proxy of alternating influence of estuarine and oceanic waters in these systems.

This study addressed whether species composition and structure, and functional guilds of the fish assemblages associated with rocky substrates changed gradually with the marine-estuarine gradient in Guanabara Bay, following thus the predictions for the ecocline gradient. Fish were sampled quarterly with bottom gillnet sets between September 2010 and December 2011 in four locations of Guanabara Bay, with physical and chemical water variables being concurrently measured during fish surveys. PCA corroborated the marine-estuarine gradient between the mouth of the bay (more saline, transparent and oxygenated waters) and the innermost and more estuarine areas (high temperature, and low oxygen and salinity). Most fish metrics, especially richness, Shannon diversity, and functional guilds mirroring the degree of estuary dependence, supported the hypothesis that the ecocline concept still can be applied to explain fish distribution in this highly-eutrophic bay. The upper estuary was intensively used by young stages of the diadromous species targeted by local fisheries, but least used by marine migrants and stragglers. The sites situated near the central portion of the bay shared many species with the upper and lower estuary, probably functioning as ecological corridors for fish dispersal. Our findings supported that shifts in the composition and structure of fish assemblages in Guanabara Bay comply with the ecocline concept, urging special attention to that measures toward environmental rehabilitation and further long-term assessments should be carried out to preserve the role of this complex ecosystem as breeding, nursery, and feeding site.

Neotropical freshwater ecosystems are experiencing a great expansion in the number of invasive species, which is especially alarming since this region harbours 30% of the world’s fish biodiversity with high levels of endemism. We aimed to evaluate the main predictors of peacock basses (Cichla spp.) abundance outside their native range, which are the Amazon and Tocantins-Araguaia river basins. We used multivariate ordination techniques and multimodel inference to analyse peacock basses abundance in twelve reservoirs of the Paraiba do Sul river basin, southeastern Brazil. Interestingly, reservoirs at higher (southernmost) latitudes, located in more populated areas, had higher water temperature and lower turbidity, due to increased water residence time, and these three variables were also positively correlated with abundance of this warm-water invasive fish. Habitat structure was less important in explaining peacock basses abundance, which was not significantly related to biotic factors (fish species richness and time since peacock basses introduction). We hypothesize that the observed effects of reservoir management on limnological features and peacock bass abundance, particularly water residence time (as a mediator of temperature and turbidity), may apply to other Neotropical basins and could influence the impact of this invader.

This study used the hypervariable domain of the mitochondrial DNA (mtDNA) control region (CR) to assess the genetic divergence among native and invasive populations of Cichla kelberi, which is considered the first peacock cichlid introduced and established throughout Brazil and is among the most invasive populations of this genus worldwide. The maximum likelihood tree based on 53 CR sequences with strong bootstrap support revealed that C. kelberi forms a monophyletic clade, confirming that all 30 C. kelberi studied belong to this morphotype. Additionally, the haplotype analysis of the C. kelberi sequences from 11 sampling sites revealed that invasive populations are much less diverse than native ones and largely dominated by a single haplotype that prevailed in reservoirs at the Paraiba do Sul River basin. Two haplotypes were recorded exclusively in an invasive population at Porto Rico, southern Brazil, and one private haplotype was detected in two reservoirs from Paraiba do Sul (Pereira Passos and Paracambi), suggesting more than one introduction event and that native populations should be better evaluated to encompass the entire genetic diversity of native C. kelberi. The possible route and pathways of C. kelberi introduction are also briefly discussed.

This study tested whether some attributes of the diversity, communities and populations of surf-zone fish assemblages varied with different hydrodynamic and anthropogenic influences at four Guanabara Bay sandy beaches: Dentro (sheltered with limited human access), Fora (exposed with limited human access), Urca (sheltered with unlimited human access) and Vermelha (exposed with unlimited human access), between autumn 2011 and summer 2012. Twenty-nine species and 1613 individuals were recorded from 76 trawls. The 10 most abundant species accounted for 94·5% of the total number, but only four species (Diplodus argenteus, Harengula clupeola, Sardinella brasiliensis and Sphoeroides greeleyi) were recorded at all four beaches, revealing a high level of species substitution. Fish assemblages differed not only for diversity attributes, but also at community and population levels, with lower values of the Shannon-Wiener index, richness and total fish abundance and biomass at Vermelha beach, and higher densities of Trachinotus carolinus, Atherinella brasiliensis and S. greeleyi related to beaches with high anthropogenic influence. The findings reveal that fish assemblages of Dentro, Fora, Urca and Vermelha beaches differed not only in response to hydrodynamic influences, but also due to the effects of different degrees of human interference (i.e. presence of solid residues, population density and fishing impacts), emphasizing the importance of the sheltered and less anthropogenically affected beaches, as spawning, nursery and growth areas.

Cetengraulis edentulus is a broadely distributed engraulid in Southwest Atlantic, currently accounting for the main fish species commercially exploited at Guanabara Bay, Brazil. This study aimed to extend the knowledge on reproduction of C. edentulus at Guanabara Bay and to test whether some descriptors of reproductive activity, especially the gonadosomatic index (GSI), and the index of reproductive activity (IRA) changed among seasons. A total of 978 C. edentulus specimens were retrieved from purse seine commercial landings at Conservas Rubi S.A. company, in São Gonçalo city, RJ. Subsamples of 90-120 individuals were collected from bimonthly yields between July 2010 (winter) and June 2011 (autumn). Most fish were adults (120-170 mm TL), in response to the high selectivity of commercial fisheries. All descriptors indicated a broad spawning period (late winter to spring), peaking in November, suggesting this is the critical period to protect C. edentulus stocks from overfishing at Guanabara Bay. Fecundity averaged 12,720 oocytes and was positively related to fish size, GSI and fullness index, indicating that preserving larger individuals (TL > 160 mm) could contribute significantly to the reproductive success of C. edentulus, since they produce more oocytes. Cetengraulis edentulus é um engraulídeo amplamente distribuído no Atlântico Sudoeste, sendo um importante recurso comercialmente explorado na baía de Guanabara, Brasil. O presente estudo teve como objetivo ampliar o conhecimento sobre a reprodução de C. edentulus na baía de Guanabara e testar quais descritores da atividade reprodutiva, especialmente o índice gonadossomático (IGS) e o índice de atividade reprodutiva (IAR) se modificaram ao longo das estações do ano. Um total de 978 indivíduos de C. edentulus foram capturados pelo método de rede de cerco da frota comercial no cais da empresa Conservas Rubi S.A., na cidade de São Gonçalo, RJ. Subamostras de 90-120 indivíduos de C. edentulus foram coletados bimestralmente durante o período de julho de 2010 (inverno) e junho de 2011 (outono). A maioria dos indivíduos foram adultos (120-170 mm CT), em resposta a alta seletividade das capturas comerciais. Todos os índices indicaram um amplo período reprodutivo (final do inverno e primavera), com pico em novembro, sugerindo que este seria um período crítico para preservar os estoques de C. edentulusda sobrepesca na baía de Guanabara. A fecundidade média foi de 12720 ovócitos e foi positivamente relacionada com tamanho do peixe, IGS e índice de repleção, indicando que preservar maiores indivíduos (CT > 160 mm) poderia contribuir significativamente para o sucesso reprodutivo de C. edentulusna área, visto que esses indivíduos produzem um maior número de ovócitos.

C. edentulus accounts for the major fishery resource in Guanabara Bay, but there are only few studies about its captures.This study analyzed the long term changes on C. edentulus catches in Guanabara Bay, focusing especially on temporal variation on capture effort, boat storage temperature, and fish price and size.We assessed the 2002-2011 database of fish landings at the pier of Rubi S.A., with records of year, month, total catch (kg), number of fish per kg, boat storage temperature (oC), and price per kg to boat owner (US$). Those variables differed among years and months (ANOVA; p