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Community structure depends jointly on species' responses to, and effects on, environmental factors. Many such factors, including detritus, are studied in ecosystem ecology. Detritus in terrestrial ecosystems is dominated by plant litter (nonliving organic material), which, in addition to its role in material cycling, can act as a niche factor modulating interactions among plants. Litter thus links traditional community and ecosystem processes, which are often studied separately. We explore this connection using population dynamics models of two plant species and a litter pool. We first find conditions determining the outcome of interactions between these species, highlighting the role that litter plays and the role of broader ecosystem parameters, such as decomposition rate. Species trade-offs in tolerance to direct competition and litter-based interference competition allow for coexistence, provided the litter-tolerant species produces more litter at the population level; otherwise, priority effects may result. When species coexist, litter-mediated interactions between plants disrupt the traditional relationship between biomass accumulation and decomposition. Increasing decomposition rate may have no effect on standing litter density and, in some cases, may even increase litter load. These results illustrate how ecosystem variables can influence community outcomes that then feed back to influence the ecosystem.

Viral dynamics within plant hosts can be important for understanding plant disease prevalence and impacts. However, few mathematical modeling efforts aim to characterize within-plant viral dynamics. In this paper, we derive a simple system of delay differential equations that describes the spread of infection throughout the plant by barley and cereal yellow dwarf viruses via the cell-to-cell mechanism. By incorporating ratio-dependent incidence function and logistic growth of the healthy cells, the model can capture a wide range of biologically relevant phenomena via the disease-free, endemic, mutual extinction steady states, and a stable periodic orbit. We show that when the basic reproduction number is less than \begin{document}$ 1 $\end{document} ( \begin{document}$ R_0 ), the disease-free steady state is asymptotically stable. When \begin{document}$ R_0>1 $\end{document} , the dynamics either converge to the endemic equilibrium or enter a periodic orbit. Using a ratio-dependent transformation, we show that if the infection rate is very high relative to the growth rate of healthy cells, then the system collapses to the mutual extinction steady state. Numerical and bifurcation simulations are provided to demonstrate our theoretical results. Finally, we carry out parameter estimation using experimental data to characterize the effects of varying nutrients on the dynamics of the system. Our parameter estimates suggest that varying the nutrient supply of nitrogen and phosphorous can alter the dynamics of the infection in plants, specifically reducing the rate of viral production and the rate of infection in certain cases.

The densities of highly competent plant hosts may shape pathogen community composition and disease severity, altering disease risk and impacts. Life history and evolutionary history influence host competence: longer-lived species tend to be better defended than shorter-lived species and pathogens adapt to infect species with which they have longer evolutionary histories. It is unclear, however, how the densities of species that differ in competence due to life and evolutionary histories affect plant pathogen community composition and disease severity.We examined foliar fungal pathogens on two host groups in a California grassland: native perennial and non-native annual grasses. We first characterized pathogen community composition and disease severity on the two host groups to approximate differences in competence. We then used observational and manipulated gradients of native perennial and non-native annual grass densities to assess the effects of each host group on pathogen community composition and disease severity in 1-m2 plots.Native perennial and non-native annual grasses hosted distinct pathogen communities but shared generalist pathogens. Native perennial grasses hosted pathogens with larger host ranges and experienced greater disease severity (75% higher proportions of leaves with lesions) than non-native annuals. While the relative abundances of three common pathogens tended to shift, and disease severity of native perennial grasses tended to increase with increasing densities of both host groups, these changes were not statistically significant.Synthesis. The life and evolutionary histories of grasses likely influence their competence for different pathogen species, leading to distinct pathogen communities and differences in disease severity. However, there was no evidence that the density of either host group significantly affected pathogen community composition or disease severity. Therefore, variation in competence for different pathogens likely shapes pathogen community composition and disease severity but may not interact with host density to alter disease risk and impacts at small scales.

Invasive species impact ecosystems through their large abundances and strong per capita effects. Enemies can regulate abundances and per capita effects, but are notably absent for many new invaders. However, invaders acquire enemies over time and as they spread; processes hypothesized to mitigate negative invader impacts by reducing abundance or per capita effects. Alternatively, properties of invaders or acquired enemies, such as an enemy’s ability to attack multiple species, may hinder enemy mitigation of invader impacts. We used field experiments to evaluate disease mitigation of invader impacts using the invasive grass Microstegium vimineum, which hosts an emerging fungal disease, and a native grass competitor, Elymus virginicus. We manipulated competition through density gradients of each plant species, and we reduced ambient foliar diseases with fungicide and autoclaving. We then modeled long-term population dynamics with field-estimated parameters. In the field, disease did not reduce invader abundance or per capita effects. The invader amplified disease on itself and the competitor, and disease reduced invader and competitor fitness components (e.g., germination). The dynamical model predicted that disease impacts on the competitor are greater than on the invader, such that disease will reduce invader abundance by 18%, and competitor abundance by 88%, over time. Our study suggests that enemies acquired by invaders will not necessarily mitigate invader impacts if the invader amplifies the enemy and the enemy attacks and suppresses competitor species.

Early detection and eradication of invasive plants are more cost-effective than managing well-established invasive plant populations and their impacts. However, there is high uncertainty around which taxa are likely to become invasive in a given area. Horizon scanning, which pairs rapid risk assessment with consensus building among experts, can help identify invasion threats. We performed a horizon scan of potential invasive plant threats to Florida, USA—a state with a high influx of introduced species, conditions that are favorable for plant establishment, and a history of negative impacts from invasive plants. We began with a list of 2128 non-native plant species and subspecies that are crop pests or invasive somewhere in the world and used publicly available data to prioritize 100 taxa for rapid risk assessment. We derived overall invasion risk scores by evaluating the likelihood and certainty of each of the 100 taxa arriving, establishing, and having an impact in Florida. Through the rapid risk assessments and a consensus-building discussion, we identified six plant taxa with high overall risk scores ranging from 75 to 100 out of a possible 125. The six taxa are globally distributed, easily transported to new areas, found in regions with climates similar to Florida’s, and can impact native plant communities, human health, or agriculture. We recommend more thorough risk assessments for each of these six species and, if appropriate, policy and management actions to limit invasive plant introduction and establishment in Florida.

Host nutrient supply can mediate host–pathogen and pathogen–pathogen interactions. In terrestrial systems, plant nutrient supply is mediated by soil microbes, suggesting a potential role of soil microbes in plant diseases beyond soil‐borne pathogens and induced plant defenses. Long‐term nitrogen (N) enrichment can shift pathogenic and nonpathogenic soil microbial community composition and function, but it is unclear if these shifts affect plant–pathogen and pathogen–pathogen interactions. In a growth chamber experiment, we tested the effect of long‐term N enrichment on infection by Barley Yellow Dwarf Virus (BYDV‐PAV) and Cereal Yellow Dwarf Virus (CYDV‐RPV), aphid‐vectored RNA viruses, in a grass host. We inoculated sterilized growing medium with soil collected from a long‐term N enrichment experiment (ambient, low, and high N soil treatments) to isolate effects mediated by the soil microbial community. We crossed soil treatments with a N supply treatment (low, high) and virus inoculation treatment (mock‐, singly‐, and co‐inoculated) to evaluate the effects of long‐term N enrichment on plant–pathogen and pathogen–pathogen interactions, as mediated by N availability. We measured the proportion of plants infected (i.e., incidence), plant biomass, and leaf chlorophyll content. BYDV‐PAV incidence (0.96) declined with low N soil (to 0.46), high N supply (to 0.61), and co‐inoculation (to 0.32). Low N soil mediated the effect of N supply on BYDV‐PAV: instead of N supply reducing BYDV‐PAV incidence, the incidence increased. Additionally, ambient and low N soil ameliorated the negative effect of co‐inoculation on BYDV‐PAV incidence. BYDV‐PAV infection only reduced chlorophyll when plants were grown with low N supply and ambient N soil. There were no significant effects of long‐term N soil on CYDV‐RPV incidence. Soil inoculant with different levels of long‐term N enrichment had different effects on host–pathogen and pathogen–pathogen interactions, suggesting that shifts in soil microbial communities with long‐term N enrichment may mediate disease dynamics., Soil microbes alter plant nutrient supply and plant defenses, both of which can modify plant‐pathogen and pathogen‐pathogen interactions. It is unclear if changes in soil microbial communities exposed to long‐term nitrogen (N) enrichment affect their mediation of plant diseases. In a laboratory experiment, soil exposed to long‐term N enrichment neutralized the negative effects of nitrogen and co‐inoculation on infection incidence of a grass virus.

Human activities alter elemental nutrient cycling, which can have profound impacts on agriculture, grasslands, lakes, and other systems. It is becoming increasingly clear that enhanced nitrogen and phosphorus levels can affect disease dynamics across a range of taxa. However, there are few mathematical models that explicitly incorporate nutrients into host-pathogen interactions. Using viral load and plant mass data from an experiment with cereal yellow dwarf virus and its host plant, Avena sativa, we propose and compare two models describing the overall infection dynamics. However, the first model considers nutrient-limited virus production while the other considers a nutrient-induced viral production delay. A virus reproduction number is derived for this nutrient model, which depends on environmental and physiological attributes. Results suggest that including nutrient mediated viral production mechanisms can give rise to robust models that can be used to untangle how nutrients impact pathogen dynamics.

Diversity and nitrogen addition have positive relationships with plant productivity, yet climate-induced changes in water availability threaten to upend these established relationships. Using long-term data from three experiments in a mesic grassland (ranging from 17 to 34 yr of data), we tested how the effects of species richness and nitrogen addition on community-level plant productivity changed as a function of annual fluctuations in water availability using growing season precipitation and the Standardized Precipitation-Evapotranspiration Index (SPEI). While results varied across experiments, our findings demonstrate that water availability can magnify the positive effects of both biodiversity and nitrogen addition on productivity. These results suggest that productivity responses to anthropogenic species diversity loss and increasing nitrogen deposition could depend on precipitation regimes, highlighting the importance of testing interactions between multiple global change drivers.

Infectious diseases and invasive species can be strong drivers of biological systems that may interact to shift plant community composition. For example, disease can modify resource competition between invasive and native species. Invasive species tend to interact with a diversity of native species, and it is unclear how native species differ in response to disease-mediated competition with invasive species. Here, we quantified the biomass responses of three native North American grass species (Dichanthelium clandestinum, Elymus virginicus, and Eragrostis spectabilis) to disease-mediated competition with the non-native invasive grass Microstegium vimineum. The foliar fungal pathogen Bipolaris gigantea has recently emerged in Microstegium populations, causing a leaf spot disease that reduces Microstegium biomass and seed production. In a greenhouse experiment, we examined the effects of B. gigantea inoculation on two components of competitive ability for each native species: growth in the absence of competition and biomass responses to increasing densities of Microstegium. Bipolaris gigantea inoculation affected each of the three native species in unique ways, by increasing (Dichanthelium), decreasing (Elymus), or not changing (Eragrostis) their growth in the absence of competition relative to mock inoculation. Bipolaris gigantea inoculation did not, however, affect Microstegium biomass or mediate the effect of Microstegium density on native plant biomass. Thus, B. gigantea had species-specific effects on native plant competition with Microstegium through species-specific biomass responses to B. gigantea inoculation, but not through modified responses to Microstegium density. Our results suggest that disease may uniquely modify competitive interactions between invasive and native plants for different native plant species.

Plant-pathogen interactions occur throughout the process of plant invasion: pathogens can acutely influence plant survival and reproduction, while the large densities and spatial distributions of invasive plant species can influence pathogen communities. However, interactions between invasive plants and pathogens are often overlooked during the early stages of invasion. As with introductions of invasive plants, the introduction of agricultural crops to new areas can also generate novel host-pathogen interactions. The close monitoring of agricultural plants and resulting insights can inform hypotheses for invasive plants where research on pathogen interactions is lacking. This chapter reviews the known and hypothesized effects of pathogens on the invasion process and the effects of plant invasion on pathogens and infectious disease dynamics throughout the process of invasion. Initially, pathogens may inhibit the transport of potentially invasive plants. After arrival in a new range, pathogens can facilitate or inhibit establishment success of introduced plants depending on their relative impacts on the introduced plants and resident species. As invasive plants spread, they may encounter novel pathogens and alter the abundance and geographic range of pathogens. Pathogens can mediate interactions between invasive plants and resident species and may influence the long-term impacts of invasive plants on ecosystems. As invasive plants shift the composition of pathogen communities, resident species could be subject to higher disease risk. We highlight gaps in invasion biology research by providing examples from the agricultural literature and propose topics that have received little attention from either field.

Infectious diseases and invasive species are strong drivers of biological systems that may interact to shift plant community composition. Disease and invasion can each directly suppress native populations, but variation in responses among native species to disease, invasion, and their combined effects are not well characterized. Here, we quantified the responses of three native North American grass species to experimental inoculation with the fungal pathogen Bipolaris gigantea, which has recently emerged in populations of the invasive grass Microstegium vimineum, causing leaf spot disease. In a greenhouse experiment, we examined the direct effects of disease on the native species and the indirect effects of disease on the native species through altered competition with M. vimineum, which was planted at a range of densities. Pathogen inoculation directly affected each of the three native species in unique ways, by increasing, decreasing, or not changing their biomass relative to mock inoculation. Higher M. vimineum densities, however, reduced the biomass of all three native species, regardless of inoculation treatment, suggesting that disease had no indirect effects through altered competition. In addition, competition with M. vimineum suppressed native plant biomass to a greater extent than disease. The differential impacts of B. gigantea and the consistent impacts of M. vimineum on native species biomass suggest that disease may modify native plant community composition while plant invasion may suppress multiple native plant species in systems where these drivers co-occur.

Non-native invasive plants can establish in natural areas, where they can be ecologically damaging and costly to manage. Like cultivated plants, invasive plants can experience a relatively disease-free period upon introduction and accumulate pathogens over time. Diseases of invasive plant populations are infrequently studied compared to diseases of agriculture, forestry, and even native plant populations. We evaluated similarities and differences in the processes that are likely to affect pathogen accumulation and disease in invasive plants compared to cultivated plants, which are the dominant focus of the field of plant pathology. Invasive plants experience more genetic, biotic, and abiotic variation across space and over time than cultivated plants, which is expected to stabilize the ecological and evolutionary dynamics of interactions with pathogens and possibly weaken the efficacy of infectious disease in their control. Although disease is expected to be context dependent, the widespread distribution of invasive plants makes them important pathogen reservoirs. Research on invasive plant diseases can both protect crops and help manage invasive plant populations.

Ecological theory that predicts the effects of resource availability on species interactions has been explored across a range of systems. Yet, application of this theory to communities of host-associated pathogens has been limited. Host resources and diet can impact disease severity and prevalence, and these resource effects on disease may be mediated by pathogen-pathogen interactions within hosts infected with multiple pathogens. As with free-living organisms, pathogen species can alter each other’s population growth rates, population densities, and transmission to new hosts through facilitative or antagonistic processes. We used a model grass-virus system (Barley and Cereal Yellow Dwarf Viruses) to test the hypothesis that host nutrition can constrain virus-virus interactions by simultaneously determining both within-host density and transmission to new hosts. Hosts (oats) were grown in growth chambers with different concentrations of soil nitrogen (N) and phosphorus (P) and infected with one or both viruses (i.e., coinfection). We quantified the impacts of nutrient addition on virus-virus interactions through within-host density (i.e., the concentration of viruses in a plant) and transmission to new hosts. Nutrients promoted facilitation of one virus (CYDV-RPV) through increased density (elevated N) and increased transmission (elevated N and P) with coinfection relative to single infection. The other virus (BYDV-PAV) experienced facilitation through increased density when nutrients were limited, but nutrient addition led to antagonistic effects of coinfection on density (elevated N and P) and transmission (elevated N). Our results highlight opportunities for novel insights from testing predictions of community ecology in disease systems, including nutrient-dependent facilitation and nutrient-mediated interactions during transmission that were not predicted by within-host dynamics. This study contributes to the growing literature on ecological interactions among coinfecting pathogens by demonstrating that resource availability can mediate pathogen-pathogen interactions both within hosts and during transmission.

Aim Evidence linking the accumulation of exotic species to the suppression of native diversity is equivocal, often relying on data from studies that have used different methods. Plot-level studies often attribute inverse relationships between native and exotic diversity to competition, but regional abiotic filters, including anthropogenic influences, can produce similar patterns. We seek to test these alternatives using identical scale-dependent sampling protocols in multiple grasslands on two continents. Location Thirty-two grassland sites in North America and Australia. Methods We use multiscale observational data, collected identically in grain and extent at each site, to test the association of local and regional factors with the plot-level richness and abundance of native and exotic plants. Sites captured environmental and anthropogenic gradients including land-use intensity, human population density, light and soil resources, climate and elevation. Site selection occurred independently of exotic diversity, meaning that the numbers of exotic species varied randomly thereby reducing potential biases if only highly invaded sites were chosen. Results Regional factors associated directly or indirectly with human activity had the strongest associations with plot-level diversity. These regional drivers had divergent effects: urban-based economic activity was associated with high exotic : native diversity ratios; climate- and landscape-based indicators of lower human population density were associated with low exotic : native ratios. Negative correlations between plot-level native and exotic diversity, a potential signature of competitive interactions, were not prevalent; this result did not change along gradients of productivity or heterogeneity. Main conclusion We show that plot-level diversity of native and exotic plants are more consistently associated with regional-scale factors relating to urbanization and climate suitability than measures indicative of competition. These findings clarify the long-standing difficulty in resolving drivers of exotic diversity using single-factor mechanisms, suggesting that multiple interacting anthropogenic-based processes best explain the accumulation of exotic diversity in modern landscapes.

International audience; Disease and community ecology share conceptual and theoretical lineages, and there has been a resurgence of interest in strengthening links between these fields. Building on recent syntheses focused on the effects of host community composition on single pathogen systems, we examine pathogen (microparasite) communities using a stochastic metacommunity model as a starting point to bridge community and disease ecology perspectives. Such models incorporate the effects of core community processes, such as ecological drift, selection and dispersal, but have not been extended to incorporate host-pathogen interactions, such as immunosuppression or synergistic mortality, that are central to disease ecology. We use a two-pathogen susceptible-infected (SI) model to fill these gaps in the metacommunity approach; however, SI models can be intractable for examining species-diverse, spatially structured systems. By placing disease into a framework developed for community ecology, our synthesis highlights areas ripe for progress, including a theoretical framework that incorporates host dynamics, spatial structuring and evolutionary processes, as well as the data needed to test the predictions of such a model. Our synthesis points the way for this framework and demonstrates that a deeper understanding of pathogen community dynamics will emerge from approaches working at the interface of disease and community ecology.