17 results on '"Amir Bashiri"'
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2. CT images demonstrating the natural progression of locally advanced partially treated rectal cancer
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Niteesh Sundaram, Anthony Morada, Amir Bashiri, and Burt Cagir
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Treatment Outcome ,Rectal Neoplasms ,Humans ,General Medicine ,Tomography, X-Ray Computed ,Neoadjuvant Therapy ,Neoplasm Staging ,Retrospective Studies - Published
- 2024
3. Thermal spread with Voyant 5 mm Fusion versus LigaSure 5 mm Blunt Tip Devices
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Austin Carmack, Emma K. Satchell, Apar S. Patel, Amir Bashiri, Burt Cagir, and Anne Rizzo
- Abstract
Thermal spread is an unavoidable side-effect of electrocautery, however limiting it is important for minimizing damage to surrounding tissues. LigaSure 5 mm Blunt Tip has been in use since 2009 while Voyant 5 mm Fusion has only been FDA approved since 2018. Our hospital, a rural academic tertiary care center, recently moved to purchasing Voyant because of cost concerns. We aimed to compare the thermal spread of the two tools on raw pork meat at two different cut depths and on both right and left sides. The LigaSure device had significantly less thermal spread than Voyant across all measurements. Based on our data, the LigaSure device should be chosen for use despite the increased cost.
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- 2022
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4. Identification of core allosteric sites through temperature- and nucleus-invariant chemical shift covariance
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Hebatallah Mohamed, Ubaidullah Baryar, Amir Bashiri, Rajeevan Selvaratnam, Bryan VanSchouwen, and Giuseppe Melacini
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Allosteric Regulation ,Biophysics ,Molecular Conformation ,Temperature ,Guanine Nucleotide Exchange Factors ,Articles ,Allosteric Site - Abstract
Allosteric regulation is essential to control biological function. In addition, allosteric sites offer a promising venue for selective drug targeting. However, accurate mapping of allosteric sites remains challenging since allostery relies on often subtle, yet functionally relevant, structural and dynamical changes. A viable approach proposed to overcome such challenge is chemical shift covariance analysis (CHESCA). Although CHESCA offers an exhaustive map of allosteric networks, it is critical to define the core allosteric sites to be prioritized in subsequent functional studies or in the design of allosteric drugs. Here, we propose two new CHESCA-based methodologies, called temperature CHESCA (T-CHESCA) and CLASS-CHESCA, aimed at narrowing down allosteric maps to the core allosteric residues. Both T- and CLASS-CHESCAs rely on the invariance of core inter-residue correlations to changes in the chemical shifts of the active and inactive conformations interconverting in fast exchange. In T-CHESCA the chemical shifts of such states are modulated through temperature changes, while in CLASS-CHESCA through variations in the spin-active nuclei involved in pairwise correlations. T- and CLASS-CHESCAs, as well as complete-linkage CHESCA, were applied to the cAMP-binding domain of the exchange protein directly activated by cAMP (EPAC), which serves as a prototypical allosteric switch. Residues consistently identified by the three CHESCA methods were found in previously identified EPAC allosteric core sites. Hence, T-, CLASS-, and CL-CHESCA provide a toolset to establish allosteric site hierarchy and triage allosteric sites to be further analyzed by mutations and functional assays. Furthermore, the core allosteric networks selectively revealed through T- and CLASS-CHESCA are expected to facilitate the mechanistic understanding of disease-related mutations and the design of selective allosteric modulators.
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- 2021
5. A systematic review of primary ileostomy site malignancies
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Anthony Onde Morada, Sri Harshavardhan Senapathi, Amir Bashiri, Seungwoo Chai, and Burt Cagir
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Male ,Adenomatous Polyposis Coli ,Ileostomy ,Humans ,Surgical Stomas ,Surgery ,Female ,Adenocarcinoma ,Neoplasm Recurrence, Local - Abstract
This paper aimed to elucidate the etiologies of all primary ileostomy site malignancies published in the literature.A review of the literature was conducted following PRISMA guidelines by querying PubMed, Global Health, and Web of Science for articles published before November 2020. Search criteria contained broad terminology for ileostomy site neoplasms without language, date, or publication limitations. A full-text review of the abstracts confirmed primary malignant pathologies and was evaluated for study inclusion.Literature search discovered 858 publications, with 76 meeting eligibility criteria. The final sample contained 91 patients, with equal males and females. The mean age of patients with ileostomy site malignancy was 62.0 ± 12.2, with an average ileostomy age of 29.4 ± 12.4. The most common indications for ileostomy creation were inflammatory bowel disease (IBD) (73.6%) and familial adenomatous polyposis (FAP) (20.9%). There was a total of eight ileostomy malignant pathologies reported, with adenocarcinoma being the most common (76.9%), followed by squamous cell carcinoma (SCC) (11.0%). Adenocarcinoma was diagnosed at a younger age than SCC (59.7 vs. 72.3) and developed over a shorter time (28.8 vs. 37.0). Patients with FAP almost exclusively developed adenocarcinoma (94.4%) at a younger stoma age (25.8 vs. 31.4) than those with IBD who developed seven diverse pathologies. With a median follow-up of 0.75 years, four patients developed disease recurrence and received oncologic resection of their cancer less often than the 55 negative patients (p = 0.04).Ileostomy site malignancies are late-appearing complications that require curative surgery. Their presentation is associated with ileostomy duration and creation indication, such as FAP or IBD. We recommend screening at a stoma age ≥ 20 or patient age ≥ 50 for patients with FAP, while stoma age ≥ 25 or patient age ≥ 60 for IBD patients.
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- 2021
6. Correlation between the micromorphological parameters and residual solvent content of a crystalline steroid drug
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Hasznos-Nezdei, Magdolna, Kovács, József, Kováts, Sándor, Shahroodi, Amir Bashiri, and Szabó-Révész, Piroska
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- 2006
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7. Cellular cholesterol accumulation modulates high fat high sucrose (HFHS) diet-induced ER stress and hepatic inflammasome activation in the development of non-alcoholic steatohepatitis
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Jing Zhang, Kevin Chien, Mark Naples, Dominic S. Ng, Dinushan Nesan, Graham F. Maguire, Amir Bashiri, Carolyn L. Cummins, Ian Sue-Chue-Lam, Khosrow Adeli, Ghazaleh Tavallaee, and Lilia Magomedova
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0301 basic medicine ,medicine.medical_specialty ,Inflammasomes ,Palmitic Acid ,Biology ,Diet, High-Fat ,Cholesterol, Dietary ,Phosphatidylcholine-Sterol O-Acyltransferase ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Lecithin Cholesterol Acyltransferase Deficiency ,Non-alcoholic Fatty Liver Disease ,Internal medicine ,medicine ,Animals ,Humans ,Molecular Biology ,Mice, Knockout ,Cholesterol ,Endoplasmic reticulum ,Fatty liver ,Wild type ,Inflammasome ,Hep G2 Cells ,Cell Biology ,Endoplasmic Reticulum Stress ,Lipid Metabolism ,medicine.disease ,Mice, Inbred C57BL ,Disease Models, Animal ,030104 developmental biology ,Endocrinology ,Gene Expression Regulation ,Liver ,Receptors, LDL ,Biochemistry ,chemistry ,Unfolded protein response ,Female ,lipids (amino acids, peptides, and proteins) ,Steatosis ,Steatohepatitis ,Oxidation-Reduction ,Signal Transduction ,medicine.drug - Abstract
Non-alcoholic steatohepatitis (NASH), is the form of non-alcoholic fatty liver disease posing risk to progress into serious long term complications. Human and pre-clinical models implicate cellular cholesterol dysregulation playing important role in its development. Mouse model studies suggest synergism between dietary cholesterol and fat in contributing to NASH but the mechanisms remain poorly understood. Our laboratory previously reported the primary importance of hepatic endoplasmic reticulum cholesterol (ER-Chol) in regulating hepatic ER stress by comparing the responses of wild type, Ldlr-/-xLcat+/+ and Ldlr-/-xLcat-/- mice, to a 2% high cholesterol diet (HCD). Here we further investigated the roles of ER-Chol and ER stress in HFHS diet-induced NASH using the same strains. With HFHS diet feeding, both WT and Ldlr-/-xLcat+/+ accumulate ER-Chol in association with ER stress and inflammasome activation but the Ldlr-/-xLcat-/- mice are protected. By contrast, all three strains accumulate cholesterol crystal, in correlation with ER-Chol, albeit less so in Ldlr-/-xLcat-/- mice. By comparison, HCD feeding per se (i) is sufficient to promote steatosis and activate inflammasomes, and (ii) results in dramatic accumulation of cholesterol crystal which is linked to inflammasome activation in Ldlr-/-xLcat-/- mice, independent of ER-Chol. Our data suggest that both dietary fat and cholesterol each independently promote steatosis, cholesterol crystal accumulation and inflammasome activation through distinct but complementary pathways. In vitro studies using palmitate-induced hepatic steatosis in HepG2 cells confirm the key roles by cellular cholesterol in the induction of steatosis and inflammasome activations. These novel findings provide opportunities for exploring a cellular cholesterol-focused strategy for treatment of NASH.
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- 2016
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8. PC216. Ultrasound-Assisted Retrieval of Embolized Femoral Arterial Catheter
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John Blebea and Amir Bashiri
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medicine.medical_specialty ,business.industry ,medicine ,Surgery ,Radiology ,Arterial catheter ,Cardiology and Cardiovascular Medicine ,Ultrasound assisted ,business - Published
- 2019
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9. Influence of Work of Adhesion on Dissolution Rate in Binary Solid Systems
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Péter Kása, Piroska Szabó-Révész, Parya Reisi Nassab, Zsófia Tüske, and Amir Bashiri-Shahroodi
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Materials science ,Kinetics ,Mineralogy ,Surfaces and Interfaces ,General Chemistry ,Adhesion ,Dosage form ,Surface energy ,Surfaces, Coatings and Films ,Contact angle ,Chemical engineering ,Mechanics of Materials ,Specific surface area ,Materials Chemistry ,Particle size ,Dissolution - Abstract
In powder mixtures, the interactions between the particles are determined by the forces of adhesion and cohesion. The size and the specific surface area of the particles are also determinative factors in the interparticle interactions. The aim of the present work was to investigate the surface properties of different physical mixtures of meloxicam (ME) and find a possible relation between surface properties and dissolution of physical mixtures. The contact angle, surface free energy, polarity, work of adhesion, and work of cohesion of the drug, the carrier, and their physical mixtures were calculated. ME samples with different particle sizes were investigated without the carrier and in two different ratios with mannitol. A smaller (micronized) particle size without the carrier did not improve the dissolution of the drug. However, with the ideal particle size of the drug (ME2) and the ideal ratio of ME and mannitol (1:10), total dissolution of drug was achieved. In this case, mannitol functioned as a core ...
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- 2007
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10. Lecithin:Cholesterol Acyltransferase (LCAT) Deficiency Promotes Differentiation of Satellite Cells to Brown Adipocytes in a Cholesterol-dependent Manner*
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Deborah Koh, Dominic S. Ng, Amir Bashiri, Rawand Abdin, Dinushan Nesan, and Ghazaleh Tavallaee
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medicine.medical_specialty ,Satellite Cells, Skeletal Muscle ,Cellular differentiation ,Sterol O-acyltransferase ,Biology ,Biochemistry ,chemistry.chemical_compound ,Mice ,Lecithin Cholesterol Acyltransferase Deficiency ,Internal medicine ,Brown adipose tissue ,medicine ,Animals ,Molecular Biology ,Mice, Knockout ,Adipogenesis ,Cholesterol ,Lecithin Acyltransferase Deficiency ,Cell Differentiation ,Cell Biology ,Thermogenin ,Endocrinology ,medicine.anatomical_structure ,Metabolism ,Adipocytes, Brown ,chemistry ,LDL receptor ,lipids (amino acids, peptides, and proteins) - Abstract
Our laboratory previously reported that lecithin:cholesterol acyltransferase (LCAT) and LDL receptor double knock-out mice (Ldlr(-/-)xLcat(-/-) or DKO) spontaneously develop functioning ectopic brown adipose tissue (BAT) in skeletal muscle, putatively contributing to protection from the diet-induced obesity phenotype. Here we further investigated their developmental origin and the mechanistic role of LCAT deficiency. Gene profiling of skeletal muscle in DKO newborns and adults revealed a classical lineage. Primary quiescent satellite cells (SC) from chow-fed DKO mice, not in Ldlr(-/-)xLcat(+/+) single-knock-out (SKO) or C57BL/6 wild type, were found to (i) express exclusively classical BAT-selective genes, (ii) be primed to express key functional BAT genes, and (iii) exhibit markedly increased ex vivo adipogenic differentiation into brown adipocytes. This gene priming effect was abrogated upon feeding the mice a 2% high cholesterol diet in association with accumulation of excess intracellular cholesterol. Ex vivo cholesterol loading of chow-fed DKO SC recapitulated the effect, indicating that cellular cholesterol is a key regulator of SC-to-BAT differentiation. Comparing adipogenicity of Ldlr(+/+)xLcat(-/-) (LCAT-KO) SC with DKO SC identified a role for LCAT deficiency in priming SC to express BAT genes. Additionally, we found that reduced cellular cholesterol is important for adipogenic differentiation, evidenced by increased induction of adipogenesis in cholesterol-depleted SC from both LCAT-KO and SKO mice. Taken together, we conclude that ectopic BAT in DKO mice is classical in origin, and its development begins in utero. We further showed complementary roles of LCAT deficiency and cellular cholesterol reduction in the SC-to-BAT adipogenesis.
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- 2015
11. A Tool Set to Map Dynamic Allosteric Networks through the NMR Chemical Shift Covariance Analysis (CHESCA)
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Stephen Boulton, Amir Bashiri, Rajeevan Selvaratnam, Madoka Akimoto, and Giuseppe Melacini
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Set (abstract data type) ,Analysis of covariance ,Biochemistry ,Chemistry ,Chemical shift ,Allosteric regulation ,Biophysics ,Determination methods ,Computational biology ,Conformational ensembles ,Classical structure ,Complement (set theory) - Abstract
Allostery is an essential regulatory mechanism of biological function and allosteric sites are also pharmacologically relevant, as they are typically targeted with higher selectivity than orthosteric sites. However, obtaining a comprehensive map of allosteric sites poses experimental challenges because allostery is driven not only by structural changes, but also by modulations in dynamics that often remain elusive to classical structure determination methods. An avenue to overcome these challenges is provided by the covariance analysis of NMR chemical shift [1, 2], which are exquisitely sensitive to redistributions in dynamic conformational ensembles. Here, we propose a set of complementary algorithms for the NMR chemical shift covariance analysis (CHESCA) designed to reliably detect allosteric networks with minimal occurrences of false positives or negatives. The proposed CHESCA toolset was tested for two allosteric proteins (Protein Kinase A, PKA, and the Exchange Protein directly Activated by cAMP, EPAC) and is expected to complement traditional comparative structural analyses in the comprehensive identification of functionally relevant allosteric sites, including those in otherwise elusive partially unstructured regions.[1] Signaling through dynamic linkers as revealed by PKA. Akimoto M, Selvaratnam R, McNicholl ET, Verma G, Taylor SS, Melacini G. Proc Natl Acad Sci U S A. 2013;110(35):14231-6.[2] Mapping allostery through the covariance analysis of NMR chemical shifts. Selvaratnam R, Chowdhury S, VanSchouwen B, Melacini G. Proc Natl Acad Sci U S A. 2011;108(15):6133-8.
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- 2015
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12. A Tool Set to Map Allosteric Networks through the NMR Chemical Shift Covariance Analysis
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Stephen Boulton, Rajeevan Selvaratnam, Giuseppe Melacini, Madoka Akimoto, and Amir Bashiri
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Models, Molecular ,Computer science ,Allosteric regulation ,Molecular Conformation ,Computational biology ,010402 general chemistry ,Bioinformatics ,01 natural sciences ,Article ,Molecular conformation ,03 medical and health sciences ,Allosteric Regulation ,Set (psychology) ,Nuclear Magnetic Resonance, Biomolecular ,Conformational ensembles ,Classical structure ,030304 developmental biology ,Complement (set theory) ,Analysis of covariance ,0303 health sciences ,Multidisciplinary ,Mechanism (biology) ,Chemical shift ,Reproducibility of Results ,0104 chemical sciences ,Algorithms ,Allosteric Site ,Function (biology) - Abstract
Allostery is an essential regulatory mechanism of biological function. Allosteric sites are also pharmacologically relevant as they are often targeted with higher selectivity than orthosteric sites. However, a comprehensive map of allosteric sites poses experimental challenges because allostery is driven not only by structural changes, but also by modulations in dynamics that typically remain elusive to classical structure determination methods. An avenue to overcome these challenges is provided by the NMR chemical shift covariance analysis (CHESCA), as chemical shifts are exquisitely sensitive to redistributions in dynamic conformational ensembles. Here, we propose a set of complementary CHESCA algorithms designed to reliably detect allosteric networks with minimal occurrences of false positives or negatives. The proposed CHESCA toolset was tested for two allosteric proteins (PKA and EPAC) and is expected to complement traditional comparative structural analyses in the comprehensive identification of functionally relevant allosteric sites, including those in otherwise elusive partially unstructured regions.
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- 2014
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13. Emerging role of cellular cholesterol in the pathogenesis of nonalcoholic fatty liver disease
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Lixin Li, Dominic S. Ng, Amir Bashiri, and Ghazaleh Tavallaee
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Nutrition and Dietetics ,business.industry ,Endocrinology, Diabetes and Metabolism ,Cell Biology ,medicine.disease ,Bioinformatics ,Pathogenesis ,Fatty Liver ,Mice ,Cholesterol ,Liver ,Non-alcoholic Fatty Liver Disease ,Cellular cholesterol ,Nonalcoholic fatty liver disease ,Genetics ,Medicine ,Animals ,Humans ,Cardiology and Cardiovascular Medicine ,business ,Molecular Biology ,Triglycerides - Published
- 2013
14. Preparation of a solid dispersion by a dropping method to improve the rate of dissolution of meloxicam
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Piroska Szabó-Révész, Róbert Rajkó, Parya Reisi Nassab, and Amir Bashiri-Shahroodi
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Chemistry, Pharmaceutical ,Thiazines ,Pharmaceutical Science ,Biological Availability ,Polyethylene glycol ,Meloxicam ,law.invention ,Polyethylene Glycols ,chemistry.chemical_compound ,law ,Phase (matter) ,Drug Discovery ,Organic chemistry ,Crystallization ,Solubility ,Dissolution ,Pharmacology ,Drug Carriers ,Aqueous solution ,Organic Chemistry ,Anti-Inflammatory Agents, Non-Steroidal ,Bioavailability ,Thiazoles ,Chemical engineering ,chemistry ,Dispersion (chemistry) ,Powder Diffraction ,Tablets - Abstract
Application of a solid dispersion system is one of the methods used to increase the bioavailability of poorly water-soluble drugs. Adaptation of the dropping method from the chemical industry as a formulation procedure may help the scaling-up process and simplify the formulation of poorly water-soluble compounds. Meloxicam (ME), a nonsteroidal anti-inflammatory drug that is poorly soluble in water, and polyethylene glycol (PEG) 4000, a water-soluble carrier, were formulated by using a dropping method in an attempt to improve the dissolution of ME. Pure ME and physical mixtures and tablets of ME-PEG 4000 (1:3 ratio) were compared as regards their dissolution with samples formulated by the dropping method. The results revealed that the round particles (solid drops) exhibited a higher dissolution rate than those of the physical mixtures, tablets, and pure ME. Self-modeling curve resolution (SMCR) as a chemometric method was used to evaluate X-ray powder diffractometry (XRPD) data. The results demonstrated the presence of a new crystalline phase in the solid dispersion, which can help the fast and quantitative dissolution from the solid drops. The round particles can be adapted to individual therapy by using a distributor.
- Published
- 2008
15. Cellular cholesterol modulates the differentiation of satellite cells to brown fat in lcat-deficient ldlr-null mice
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Ghazaleh Tavallaee, Amir Bashiri, Dinushan Nesan, Rawand Abdin, Dominic S. Ng, and D. Koh
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Null mice ,biology ,Biochemistry ,LDL receptor ,Lecithin—cholesterol acyltransferase ,Cellular cholesterol ,biology.protein ,Satellite (biology) ,Cardiology and Cardiovascular Medicine ,biology.organism_classification ,Cell biology - Published
- 2015
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16. Cholesterol biosynthesis up-regulation plays a crucial role in hfd-induced hepatic er stress and hepatocellular inflammasomes activation
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Amir Bashiri, M. Menard, G. Tavallaee, and Dominic S. Ng
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medicine.medical_specialty ,Endocrinology ,Downregulation and upregulation ,Chemistry ,Internal medicine ,medicine ,Unfolded protein response ,Cardiology and Cardiovascular Medicine ,Cholesterol biosynthesis - Published
- 2014
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17. Economic Requirements of Water Resources Management
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Nasser Khiabani, Soroush Bagheri, and Amir Bashiripour
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Marketing ,Ownership Rights ,Valuation ,pricing ,Economic Management of Water Resources ,Technology ,Water supply for domestic and industrial purposes ,TD201-500 ,Sewage collection and disposal systems. Sewerage ,TD511-780 - Abstract
Indicators of water resources status and water consumption in Iran reveal an imbalance between supply and demand. This is compounded by the current unrealistic water price that signals the inefficiency of the water market in Iran. In economics parlance, the most important factors responsible for the low efficiency of water market are inaccurate valuation and failure to define the ownership rights of water. Low prices, low sensitivity of water demand to prices, and the lack of proper inputs as substitutes for water resources have collectively contributed to excessive pressures on the available water resources for domestic, industrial, and agricultural uses. A brief glance reveals that water resources in Iran are merely priced based on cost accounting. This is while study has shown that developed countries adopt approaches to water pricing that not only consider the final cost of water but also take into account such other parameters that are affected by intrinsic value of water including its bequest and existence values. The present paper draws upon the concepts of value, expenses, and pricing of water in an attempt to explore the marketing and pricing of water resources as the two major tools economists employ in the management of these resources. It is the objective of the study to arrive at an accurate definition of ownership rights of water resources to improve upon the present water marketing. In doing so, the more important components of modern pricing strategies adopted by developed nations will also be investigated. Results indicate that the present cost accounting method used in pricing water in Iran will in the long-run lead to the wastage of water resources and that it should, therefore, be given up in favor modern and more realistic policies to avoid such waste of resources.
- Published
- 2017
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