87 results on '"Allen AP"'
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2. Scope for latitudinal extension of reef corals is species specific
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Madin, JS, Allen, AP, Baird, AH, Pandolfi, JM, Sommer, B, Madin, JS, Allen, AP, Baird, AH, Pandolfi, JM, and Sommer, B
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- 2016
3. Erratum: A decadal decline in relative abundance and a shift in microphytoplankton composition at a long-term coastal station off southeast Australia
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Ajani, PA, Allen, AP, Ingleton, T, Armand, L, Ajani, PA, Allen, AP, Ingleton, T, and Armand, L
- Published
- 2014
4. Crystal structure of melaminium cyanoacetate monohydrate
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Bhawani Sigdel Regmi, Allen Apblett, and Douglas Powell
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crystal structure ,melaminium cation ,cyanoacetate anion ,hydrogen bonding ,Crystallography ,QD901-999 - Abstract
The asymmetric unit of the title compound, 2,4,6-triamino-1,3,5-triazin-1-ium cyanoacetate monohydrate, C3H7N6+·NCCH2COO−·H2O, consists of a melaminium cation, a cyanoacetate anion and a water molecule, which are connected to each other via N—H...O and O—H...O hydrogen bonds, generating an eight-membered ring. In the crystal, the melaminium cations are connected by two pairs of N—H...N hydrogen bonds, forming tapes along [110]. These tapes develop a three-dimensional network through N—H...O, O—H...O, N—H...N and C—H...O hydrogen bonds between the cations, anions and water molecules.
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- 2020
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5. Detection of Hydrogen Peroxide in Liquid and Vapors Using Titanium(IV)-Based Test Strips and Low-Cost Hardware
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Rayhan Hossain, Jimmy J. Dickinson, Allen Apblett, and Nicholas F. Materer
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titania ,peroxide vapor ,thin film sensor ,colorimetry ,Chemical technology ,TP1-1185 - Abstract
Titanium(IV) solutions are known to detect hydrogen peroxide in solutions by a colorimetric method. Xplosafe’s XploSens PS commercial titanium(IV)-based peroxide detection test strips are used to detect hydrogen peroxide in liquids. The use of these test strips as gas-phase detectors for peroxides was tested using low-cost hardware. The exposure of these strips to hydrogen peroxide liquid or gas leads to the development of an intense yellow color. For liquids, a digital single-lens reflex camera was used to quantify the color change using standardized solutions containing between 50 and 500 ppm peroxide by mass. Analysis of the images with color separation can provide a more quantitative determination than visual comparison to a color chart. For hydrogen peroxide gas, an inexpensive web camera and a tungsten lamp were used to measure the reflected light intensity as a function of exposure from a test strip held in a custom cell. First-order behavior in the color change with time was observed during the exposure to peroxide vapor over a range of peroxide concentrations from 2 and 30 ppm by volume. For a 1-min measurement, the gas-phase detection limit is estimated to be 1 ppm. A 0.01 ppm detection limit can be obtained with a 1-h exposure time. Titanium(IV)-based peroxide detection test strips are sensitive enough to work as a gas-phase hydrogen peroxide detector.
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- 2022
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6. Synthesis and Properties of Anion Exchangers Derived from Chloromethyl Styrene Codivinylbenzene and Their Use in Water Treatment
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Hesham A. Ezzeldin, Allen Apblett, and Gary L. Foutch
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Chemical technology ,TP1-1185 - Abstract
Amination of vinylbenzyl chloride-divinylbenzene (VBC-DVB) copolymers is an effective method for preparation of ion-exchange resins. Conventionally, the starting polymer is produced by chloromethylation of a styrene-divinylbenzene copolymer that utilizes chloromethyl methyl ether, a known carcinogen. An alterative approach is to copolymerize vinylbenzyl chloride with divinylbenzene to generate the necessary VBC-DVB. This method provides precise control over the density of the ion-exchange groups. The regiochemistry of the vinylbenzyl chloride methods was realized using solvent-ion exchange groups. In this investigation, an improved solvent system was found for the preparation of anion exchange resins by the vinylbenzyl chloride route. The effectiveness of amination of the intermediate VBC-DVB polymers with a variety of trimethylamine reagents was investigated, and ethanolic trimethylamine produced the highest degree of amination. These resulting ion-exchange polymers were characterized by a variety of techniques such as analytical titrations, nitrogen analysis, Fourier transform infrared spectroscopy and thermal gravimetric analysis. Testing of these copolymers for breakthrough was performed. The results indicate that these anion exchangers have a meaningful increase in thermal stability over commercial anionic exchange beads.
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- 2010
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7. Marking of Lateral Chest Films
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Allen Ap
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Lateral chest ,Acoustics ,Radiology, Nuclear Medicine and imaging ,General Medicine ,Tube (container) ,Geology ,Front (military) - Abstract
One method of marking films is to imbed permanently in the front face of every cassette a small radio-opaque marker—a flattened lead-shot is very convenient. If the cassette is held upright, resting on a short side, and the marker is placed one-third of the distance down the righthand side, the tube side of every film exposed in such a cassette is automatically indicated because the film must be held so that the image of the marker appears one-third of the way down the long right-hand border.
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- 1976
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8. Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes
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Eckalbar Walter L, Hutchins Elizabeth D, Markov Glenn J, Allen April N, Corneveaux Jason J, Lindblad-Toh Kerstin, Di Palma Federica, Alföldi Jessica, Huentelman Matthew J, and Kusumi Kenro
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Annotation ,Lizard ,Anolis carolinensis ,Transcriptome ,Genome ,RNA-Seq ,Gene ,Vertebrate ,Embryo ,Tissue-specific ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The green anole lizard, Anolis carolinensis, is a key species for both laboratory and field-based studies of evolutionary genetics, development, neurobiology, physiology, behavior, and ecology. As the first non-avian reptilian genome sequenced, A. carolinesis is also a prime reptilian model for comparison with other vertebrate genomes. The public databases of Ensembl and NCBI have provided a first generation gene annotation of the anole genome that relies primarily on sequence conservation with related species. A second generation annotation based on tissue-specific transcriptomes would provide a valuable resource for molecular studies. Results Here we provide an annotation of the A. carolinensis genome based on de novo assembly of deep transcriptomes of 14 adult and embryonic tissues. This revised annotation describes 59,373 transcripts, compared to 16,533 and 18,939 currently for Ensembl and NCBI, and 22,962 predicted protein-coding genes. A key improvement in this revised annotation is coverage of untranslated region (UTR) sequences, with 79% and 59% of transcripts containing 5’ and 3’ UTRs, respectively. Gaps in genome sequence from the current A. carolinensis build (Anocar2.0) are highlighted by our identification of 16,542 unmapped transcripts, representing 6,695 orthologues, with less than 70% genomic coverage. Conclusions Incorporation of tissue-specific transcriptome sequence into the A. carolinensis genome annotation has markedly improved its utility for comparative and functional studies. Increased UTR coverage allows for more accurate predicted protein sequence and regulatory analysis. This revised annotation also provides an atlas of gene expression specific to adult and embryonic tissues.
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- 2013
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9. Genome-wide association between DNA methylation and alternative splicing in an invertebrate
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Flores Kevin, Wolschin Florian, Corneveaux Jason J, Allen April N, Huentelman Matthew J, and Amdam Gro V
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Gene bodies are the most evolutionarily conserved targets of DNA methylation in eukaryotes. However, the regulatory functions of gene body DNA methylation remain largely unknown. DNA methylation in insects appears to be primarily confined to exons. Two recent studies in Apis mellifera (honeybee) and Nasonia vitripennis (jewel wasp) analyzed transcription and DNA methylation data for one gene in each species to demonstrate that exon-specific DNA methylation may be associated with alternative splicing events. In this study we investigated the relationship between DNA methylation, alternative splicing, and cross-species gene conservation on a genome-wide scale using genome-wide transcription and DNA methylation data. Results We generated RNA deep sequencing data (RNA-seq) to measure genome-wide mRNA expression at the exon- and gene-level. We produced a de novo transcriptome from this RNA-seq data and computationally predicted splice variants for the honeybee genome. We found that exons that are included in transcription are higher methylated than exons that are skipped during transcription. We detected enrichment for alternative splicing among methylated genes compared to unmethylated genes using fisher’s exact test. We performed a statistical analysis to reveal that the presence of DNA methylation or alternative splicing are both factors associated with a longer gene length and a greater number of exons in genes. In concordance with this observation, a conservation analysis using BLAST revealed that each of these factors is also associated with higher cross-species gene conservation. Conclusions This study constitutes the first genome-wide analysis exhibiting a positive relationship between exon-level DNA methylation and mRNA expression in the honeybee. Our finding that methylated genes are enriched for alternative splicing suggests that, in invertebrates, exon-level DNA methylation may play a role in the construction of splice variants by positively influencing exon inclusion during transcription. The results from our cross-species homology analysis suggest that DNA methylation and alternative splicing are genetic mechanisms whose utilization could contribute to a longer gene length and a slower rate of gene evolution.
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- 2012
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10. Predicting whaler shark presence and interactions with humans in southern Queensland, Australia.
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Lopes SM, Williamson JE, Lambreghts Y, Allen AP, and Brown C
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- Animals, Queensland, Humans, Endangered Species, Sharks, Conservation of Natural Resources methods
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The Queensland Shark Control Program (QSCP) started in 1962 to reduce the number of shark-human incidents by deploying nets and drumlines across the most popular beaches. The program targets large shark species (white, tiger and bull sharks) that are potentially hazardous to bathers. However, this strategy is lethal for other sharks and marine wildlife, including threatened and endangered species. Thus, finding non-lethal strategies is a priority. To better manage shark-human interactions, establishing a better understanding of the factors that drive shark movement is key. Here we used sea surface temperature (SST), rainfall and distance to rivers as environmental variables to predict the presence of whaler sharks in southern Queensland based on 26 years of catch data from the QSCP. We found that SST is positively corelated to sharks caught by drumlines, while rainfall was associated with the number of sharks captured in shark nets. In addition, more sharks were captured by nets and drumlines further away from rivers, and nets captured roughly 10 times more sharks than drumlines over the period of study. In contrast to tiger sharks, the catch data indicate the number of whalers has not declined over the past 26 years. Our findings suggest that environmental variables can be used to predict the movement of large sharks and by incorporating this knowledge into management plans and public education programs, may ultimately reduce shark-human incidents., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Crown Copyright © 2024. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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11. Autobiographical Cerebral Network Activation in Older Adults Before and After Reminiscence Therapy: A Preliminary Report.
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Viard A, Allen AP, Doyle CM, Naveau M, Bokde ALW, Platel H, Eustache F, Commins S, and Roche RAP
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- Humans, Aged, Pilot Projects, Hippocampus physiology, Quality of Life, Memory, Episodic
- Abstract
Introduction: Reminiscence therapy (RT), which engages individuals to evoke positive memories, has been shown to be effective in improving psychological well-being in older adults suffering from PTSD, depression, and anxiety. However, its impact on brain function has yet to be determined. This paper presents functional magnetic resonance imaging (fMRI) data to describe changes in autobiographical memory networks (AMN) in community-dwelling older adults., Methods: This pilot study used a within-subject design to measure changes in AMN activation in 11 older adults who underwent 6 weeks of RT. In the scanner, participants retrieved autobiographical memories which were either recent or remote, rehearsed or unrehearsed. Participants also underwent a clinical interview to assess changes in memory, quality of life, mental health, and affect., Findings: Compared to pretreatment, anxiety decreased (z = -2.014, p = .040) and activated significant areas within the AMN, including bilateral medial prefrontal cortex, left precuneus, right occipital cortex, and left anterior hippocampus., Conclusion: Although RT had subtle effects on psychological function in this sample with no evidence of impairments, including depression at baseline, the fMRI data support current thinking of the effect RT has on the AMN. Increased activation of right posterior hippocampus following RT is compatible with the Multiple Trace Theory Theory (Nadel & Moscovitch, 1997)., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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12. A scoping review of post-diagnostic dementia supports for people with intellectual disability.
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Dennehy H, Allen AP, McGlinchey E, Buttery N, García-Domínguez L, Chansler R, Corr C, Dunne P, Kennelly S, Daly L, McCallion P, and McCarron M
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Objectives: People with intellectual disability, particularly people with Down syndrome, are at an increased risk for early-onset dementia, in comparison to people without an intellectual disability. The aim of this review was to scope the current landscape of post-diagnostic dementia supports for people with intellectual disability. Method: A systematic search of five electronic databases (CINAHL, Medline, PsycArticles, PsycInfo and Web of Science) was conducted for this scoping review. Results were screened independently by two reviewers, with a third reviewer for arbitration where necessary. Results: Forty-two studies met the inclusion criteria, and relevant information was extracted. The articles included focussed on the experiences of people with intellectual disability and dementia, as well as the role of carers, family members and staff. Key themes included ageing in place, environmental supports for people with intellectual disability and dementia, dementia-specific interventions and therapies, as well as the feasibility of these interventions. Besides the studies that focussed on these themes, other studies focussed on staff training and family supports. Conclusion: This review highlights the importance of implementing timely and appropriate post-diagnostic supports for people living with intellectual disability and dementia. More controlled trials are required on post-diagnostic dementia supports for people with intellectual disability.
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- 2023
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13. Cognitive reserve and dementia risk management in people with an intellectual disability.
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Allen AP, McGlinchey E, Fallon M, McCallion P, and McCarron M
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- Humans, Intellectual Disability, Cognitive Reserve, Dementia therapy, Dementia psychology, Down Syndrome
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- 2023
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14. Morphological Variation in Bumblebees (Bombus terrestris) (Hymenoptera: Apidae) After Three Decades of an Island Invasion.
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Kardum Hjort C, Smith HG, Allen AP, and Dudaniec RY
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- Bees, Animals, Ecosystem, Australia, Body Size, Climate, Hymenoptera
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Introduced social insects can be highly invasive outside of their native range. Around the world, the introduction and establishment of the eusocial bumblebee Bombus terrestris (L. 1758) (Hymenoptera: Apidae) has negatively impacted native pollinators and ecosystems. Understanding how morphological variation is linked to environmental variation across invasive ranges can indicate how rapidly species may be diverging or adapting across novel ranges and may assist with predicting future establishment and spread. Here we investigate whether B. terrestris shows morphological variation related to environmental variation across the island of Tasmania (Australia) where it was introduced three decades ago. We collected 169 workers from 16 sites across Tasmania and related relative abundance and morphology to landscape-wide climate, land use, and vegetation structure. We found weak morphological divergence related to environmental conditions across Tasmania. Body size of B. terrestris was positively associated with the percentage of urban land cover, a relationship largely driven by a single site, possibly reflecting high resource availability in urban areas. Proboscis length showed a significant negative relationship with the percentage of pasture. Wing loading and local abundance were not related to the environmental conditions within sites. Our results reflect the highly adaptable nature of B. terrestris and its ability to thrive in different environments, which may have facilitated the bumblebee's successful invasion across Tasmania., (© The Author(s) 2023. Published by Oxford University Press on behalf of Entomological Society of America.)
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- 2023
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15. The challenges of mental health of staff working with people with intellectual disabilities during COVID-19--A systematic review.
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Chen Y, Allen AP, Fallon M, Mulryan N, McCallion P, McCarron M, and Sheerin F
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Background: The COVID-19 pandemic has posed a great risk to the mental health of health workers (HWs). There are likely to be particular concerns for staff working with adults with an intellectual disability, where infection control may be more challenging., Method: We conducted a systematic review of original research examining the mental health of HWs working with people with intellectual disability, published between March 2020 and July 2021., Results: Five original research studies were included. A high proportion of HWs working with people with intellectual disability reported having had poor mental health including stress, anxiety, and depression. This manifested in similar patterns as for other HWs and also some specific patterns seen as the need to manage increased rates of mental health issues of the people they support. Sources of support and resilience were also identified., Conclusion: The support system should target risk factors, answer unmet needs, and build resilience. More research is also required on the ongoing and long-term effects.
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- 2022
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16. AnimalTraits - a curated animal trait database for body mass, metabolic rate and brain size.
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Herberstein ME, McLean DJ, Lowe E, Wolff JO, Khan MK, Smith K, Allen AP, Bulbert M, Buzatto BA, Eldridge MDB, Falster D, Fernandez Winzer L, Griffith SC, Madin JS, Narendra A, Westoby M, Whiting MJ, Wright IJ, and Carthey AJR
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- Animals, Ecology, Organ Size, Phenotype, Basal Metabolism, Body Weight, Brain, Databases, Factual
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Trait databases have become important resources for large-scale comparative studies in ecology and evolution. Here we introduce the AnimalTraits database, a curated database of body mass, metabolic rate and brain size, in standardised units, for terrestrial animals. The database has broad taxonomic breadth, including tetrapods, arthropods, molluscs and annelids from almost 2000 species and 1000 genera. All data recorded in the database are sourced from their original empirical publication, and the original metrics and measurements are included with each record. This allows for subsequent data transformations as required. We have included rich metadata to allow users to filter the dataset. The additional R scripts we provide will assist researchers with aggregating standardised observations into species-level trait values. Our goals are to provide this resource without restrictions, to keep the AnimalTraits database current, and to grow the number of relevant traits in the future., (© 2022. The Author(s).)
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- 2022
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17. Staff mental health while providing care to people with intellectual disability during the COVID-19 pandemic.
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Sheerin F, Allen AP, Fallon M, McCallion P, McCarron M, Mulryan N, and Chen Y
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Background: The COVID-19 pandemic has placed enormous strain on health systems around the world, undermining the mental health and wellbeing of healthcare workers. Supporting people with intellectual disabilities may be particularly challenging for workers, as some people with intellectual disabilities may have a limited understanding of the pandemic, and find it challenging to adhere to the restrictions imposed by public health guidelines such as social distancing, lockdowns and change in usual routine and activities. In addition, many people with intellectual disabilities have increased vulnerability to more negative effects of COVID-19, with significantly higher mortality rates. Although there is emerging research on the mental health of healthcare staff during this time, there has been little specific work on the mental health of staff working with people with intellectual disability, particularly a lack of qualitative research., Methods: The current study employed semi-structured interviews with 13 healthcare workers (12 women and 1 man) who were working with people with intellectual disability during the COVID-19 pandemic. The interview data were analysed using thematic content analysis., Findings: The participants spoke in depth about the challenges of the working environment, the impact of providing care during the pandemic on staff mental health, supporting staff mental health and wellbeing and learning for the future., Conclusions: Systematic efforts are required to protect the mental health of this staff cohort, as well as encouraging resilience and successful coping among staff themselves., (© 2022 The Authors. British Journal of Learning Disabilities published by John Wiley & Sons Ltd.)
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- 2022
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18. Altered stress responses in adults born by Caesarean section.
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Dinan TG, Kennedy PJ, Morais LH, Murphy A, Long-Smith CM, Moloney GM, Bastiaanssen TFS, Allen AP, Collery A, Mullins D, Cusack AM, Berding K, O'Toole PW, Clarke G, Stanton C, and Cryan JF
- Abstract
Birth by Caesarean-section (C-section), which increases the risk for metabolic and immune disorders, disrupts the normal initial microbial colonisation of the gut, in addition to preventing early priming of the stress and immune-systems.. Animal studies have shown there are enduring psychological processes in C-section born mice. However, the long-term impact of microbiota-gut-brain axis disruptions due to birth by C-section on psychological processes in humans is unknown. Forty age matched healthy young male university students born vaginally and 36 C-section delivered male students were recruited. Participants underwent an acute stressor, the Trier social stress test (TSST), during a term-time study visit. A subset of participants also completed a study visit during the university exam period, representing a naturalistic stressor. Participants completed a battery of cognitive tests and self-report measures assessing mood, anxiety, and perceived stress. Saliva, blood, and stool samples were collected for analysis of cortisol, peripheral immune profile, and the gut microbiota. Young adults born by C-section exhibit increased psychological vulnerability to acute stress and a prolonged period of exam-related stress. They did not exhibit an altered salivary cortisol awakening response to the TSST, but their measures of positive affect were significantly lower than controls throughout the procedure. Both C-section and vaginally-delivered participants performed equally well on cognitive assessments. Most of the initial effects of delivery mode on the gut microbiome did not persist into adulthood as the gut microbiota profile showed modest changes in composition in adult vaginally-delivered and C-sectioned delivered subjects. From an immune perspective, concentrations of IL-1β and 1L-10 were higher in C-section participants. These data confirm that there is a potential enduring effect of delivery mode on the psychological responses to acute stress during early adulthood. The mental health implications of these observations require further study regarding policies on C-section use., Competing Interests: APC Microbiome Ireland has conducted studies in collaboration with several companies, including GSK, Pfizer, Cremo, Wyeth, Mead Johnson, Nutricia, 4D Pharma, and DuPont. T. G. Dinan has been an invited speaker at meetings organized by Servier, Lundbeck, Janssen, and AstraZeneca and has received research funding from Mead Johnson, Cremo, Nutricia, and 4D Pharma. J. F. Cryan has been an invited speaker at meetings organized by Mead Johnson, Yakult, and Alkermes, and has received research funding from Mead Johnson, Cremo, Nutricia, and IFF. GC has received honoraria from Janssen, Probi and Apsen as an invited speaker, is in receipt of research funding from Pharmavite and Fonterra and is a paid consultant for Yakult and Zentiva., (© 2021 Published by Elsevier Inc.)
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- 2021
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19. Pre-release dietary supplements of methoprene and raspberry ketone increase field abundance of sterile Queensland fruit flies (Diptera: Tephritidae).
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Biswas MJH, Mainali BP, Inskeep JR, Cross D, Benelli M, Allen AP, Taylor PW, and Rempoulakis P
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- Animals, Butanones, Dietary Supplements, Male, Methoprene, Saccharomyces cerevisiae, Tephritidae
- Abstract
The sterile insect technique (SIT) is a sustainable pest management tool based on the release of millions of sterile insects that suppress reproduction in targeted populations. Success of SIT depends on survival, maturation, dispersal, and mating of released sterile insects. Laboratory and field cage studies have demonstrated that dietary supplements of methoprene and raspberry ketone (RK) promote sexual maturation of adult Queensland fruit fly, Bactrocera tryoni (Froggatt), and may hence shorten the delay between release and maturity in the field. We investigated the effects of methoprene and RK dietary supplements on field abundance of sexually mature sterile Q-flies relative to untreated flies fed only sugar and yeast hydrolysate before release at 2 d of age. Compared with untreated flies, more methoprene- and RK-treated flies were recaptured in cuelure traps to which only sexually mature males are attracted. At distances of 100 and 200 m from the release point, recapture rates were higher for methoprene- and RK-treated flies than for untreated flies, but at 300 m recapture rates were low and were similar for treated and untreated flies. Rainfall, relative humidity, wind speed, and wind direction did not affect recapture rates, but temperature was positively correlated with recapture rates for all treatments. There was a strong correlation between the number of sterile and wild flies caught in traps, indicating co-location in the field. Dietary supplements of methoprene and RK can substantially increase abundance of sexually mature sterile male Q-flies in the field following release as 2-d-old immature adults., (© The Author(s) 2021. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2021
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20. Canopy distribution and microclimate preferences of sterile and wild Queensland fruit flies.
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Inskeep JR, Allen AP, Taylor PW, Rempoulakis P, and Weldon CW
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- Analysis of Variance, Animals, Behavior, Animal, Environment, Female, Introduced Species, Male, Population Dynamics, Insect Control methods, Microclimate, Tephritidae
- Abstract
Insects tend to live within well-defined habitats, and at smaller scales can have distinct microhabitat preferences. These preferences are important, but often overlooked, in applications of the sterile insect technique. Different microhabitat preferences of sterile and wild insects may reflect differences in environmental tolerance and may lead to spatial separation in the field, both of which may reduce the control program efficiency. In this study, we compared the diurnal microhabitat distributions of mass-reared (fertile and sterile) and wild Queensland fruit flies, Bactrocera tryoni (Froggatt) (Diptera: Tephritidae). Flies were individually tagged and released into field cages containing citrus trees. We recorded their locations in the canopies (height from ground, distance from canopy center), behavior (resting, grooming, walking, feeding), and the abiotic conditions on occupied leaves (temperature, humidity, light intensity) throughout the day. Flies from all groups moved lower in the canopy when temperature and light intensity were high, and humidity was low; lower canopy regions provided shelter from these conditions. Fertile and sterile mass-reared flies of both sexes were generally lower in the canopies than wild flies. Flies generally fed from the top sides of leaves that were lower in the canopy, suggesting food sources in these locations. Our observations suggest that mass-reared and wild B. tryoni occupy different locations in tree canopies, which could indicate different tolerances to environmental extremes and may result in spatial separation of sterile and wild flies when assessed at a landscape scale.
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- 2021
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21. Improvements in sleep indices during exam stress due to consumption of a Bifidobacterium longum .
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Moloney GM, Long-Smith CM, Murphy A, Dorland D, Hojabri SF, Ramirez LO, Marin DC, Bastiaanssen TFS, Cusack AM, Berding K, Fouhy F, Allen AP, Stanton C, Clarke G, Dinan TG, and Cryan JF
- Abstract
Targeting the gut microbiome as an effective therapeutic strategy for psychological disorders has shown promise in recent years. Variation in the composition of the microbiota and restoration of a stable microbiome using targeted interventions (psychobiotics) including Bifidobacteria have shown promise in pre-clinical studies, but more human data is required on the potential health benefits of these live microorganisms . Bifidobacterium including Bif. longum 1714 has been shown to dampen the effects of acute stress in humans. However, its effects over a period of prolonged stress have not been examined. A randomised, placebo-controlled, repeated measures, cross-over intervention study was conducted to examine the effects of a probiotic intervention on measures of stress, cognitive performance, and mood in healthy human volunteers. Twenty male students participated in this crossover study. Post-intervention assessments took place during the university exam period, which was used as a naturalistic chronic stressor. Self-reported measures of stress, depression, sleep quality, physical activity, gastrointestinal symptoms, cognition, and mood were assessed by questionnaire. In addition, tests from the Cambridge Neuropsychological Test Automated Battery (CANTAB) were administered to all participants. Stress and depression scores increased in both placebo and probiotic treated groups during the exam period. While overall sleep quality and duration of sleep improved significantly in the probiotic treated group during exam stress compared with the placebo treated group, B. longum 1714, similar to placebo treatment, showed no efficacy in improving measures of working memory, visual memory, sustained attention or perception. Overall, while B. longum 1714 shows promise in improving sleep quality and duration, it did not alleviate symptoms of chronic stress, depression, or any measure of cognitive assessment. Thus, further mechanistic studies into the ability of B. longum 1714 to modulate sleep during prolonged periods of stress are now warranted., Competing Interests: This publication has emanated from research supported, in part, by a research grant from Science Foundation Ireland (SFI) to APC Microbiome Ireland under grant SFI/12/RC/2273. The authors received additional funding from the European Community’s Seventh Framework Program Grant MyNewGut under grant FP7/2007–2013. The centre has conducted studies in collaboration with several companies, including GSK, Pfizer, Cremo, Suntory, Wyeth, and Mead Johnson., (© 2020 The Author(s).)
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- 2020
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22. The Impact of Reminiscence on Autobiographical Memory, Cognition and Psychological Well-Being in Healthy Older Adults.
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Allen AP, Doyle C, and Roche RAP
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Reminiscence therapy has improved autobiographical memory in older adults with memory impairment. However, there has been a relative lack of research examining the impact of reminiscence interventions on healthy older adults, despite the fact that healthy ageing has been associated with a reduction in episodic autobiographical memory. The current study examined the effects of a semi-structured reminiscence program, compared to a no-intervention control and an active control group focused on current life, in healthy older adults. Before and after reminiscence or control, we assessed episodic and semantic autobiographical memory, as well as reliving of the memory and re-experiencing the emotion associated with the memory. We also examined new learning and executive function, as well as quality of life, satisfaction with life, anxiety, depression, and mood. The reminiscence intervention did not lead to a differing impact on autobiographical memory, cognition or psychological well-being, compared to the control groups. The current results indicate that simple reminiscence does not lead to enhanced autobiographical memory performance in healthy older adults., Competing Interests: The authors have declared that no competing interests exist.
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- 2020
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23. Informal caregiving for dementia patients: the contribution of patient characteristics and behaviours to caregiver burden.
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Allen AP, Buckley MM, Cryan JF, Ní Chorcoráin A, Dinan TG, Kearney PM, O'Caoimh R, Calnan M, Clarke G, and Molloy DW
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- Age Factors, Aged, Cognition, Dementia psychology, Female, Humans, Male, Middle Aged, Patient Safety, Caregivers psychology, Cost of Illness, Dementia therapy, Patient Care psychology
- Abstract
Objectives: The burden often associated with informal caregiving for patients with dementia is associated with negative effects on health, both physiologically and in terms of caregiver cognition. There is wide variation in the level of burden experienced by dementia caregivers. To better understand caregiver burden, it is thus important to understand the factors associated with level of burden., Methods: In the current study, we collected carer burden and putative associated factors at baseline, 6 and 12 months. Hierarchical regression was used to assess the impact of these factors on caregiver burden. We assessed self-reported carer burden, patient behavioural and safety issues, and level of difficulty associated with providing assistance with activities of daily living (ADL). Patients' age was also recorded, and trained nurses assessed patient cognitive performance using the quick mild cognitive impairment screen., Results: At baseline, patients' age, cognition and ADLs were associated with burden, and safety and challenging behaviour were both significantly associated with burden independent of the other factors. Change in burden was associated with change in carer-reported safety at 6-month follow-up, and with change in safety and change in carer-reported challenging behaviours at 12-month follow-up., Conclusions: Safety issues and challenging behaviours are associated with carer burden, even after accounting for cognitive and functional impairment in the person with dementia. As dementia progresses, monitoring these factors may help to inform stress-management strategies for caregivers., (© The Author(s) 2019. Published by Oxford University Press on behalf of the British Geriatrics Society. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2019
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24. The energetics of fish growth and how it constrains food-web trophic structure.
- Author
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Barneche DR and Allen AP
- Subjects
- Animals, Ecosystem, Models, Theoretical, Temperature, Fishes, Food Chain
- Abstract
The allocation of metabolic energy to growth fundamentally influences all levels of biological organisation. Here we use a first-principles theoretical model to characterise the energetics of fish growth at distinct ontogenetic stages and in distinct thermal regimes. Empirically, we show that the mass scaling of growth rates follows that of metabolic rate, and is somewhat steeper at earlier ontogenetic stages. We also demonstrate that the cost of growth, E
m , varies substantially among fishes, and that it may increase with temperature, trophic level and level of activity. Theoretically, we show that Em is a primary determinant of the efficiency of energy transfer across trophic levels, and that energy is transferred more efficiently between trophic levels if the prey are young and sedentary. Overall, our study demonstrates the importance of characterising the energetics of individual growth in order to understand constraints on the structure of food webs and ecosystems., (© 2018 John Wiley & Sons Ltd/CNRS.)- Published
- 2018
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25. Kynurenine pathway metabolism and the neurobiology of treatment-resistant depression: Comparison of multiple ketamine infusions and electroconvulsive therapy.
- Author
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Allen AP, Naughton M, Dowling J, Walsh A, O'Shea R, Shorten G, Scott L, McLoughlin DM, Cryan JF, Clarke G, and Dinan TG
- Subjects
- Adult, Antidepressive Agents administration & dosage, Biomarkers blood, Humans, Ketamine administration & dosage, Metabolic Networks and Pathways drug effects, Antidepressive Agents pharmacology, Cytokines drug effects, Depressive Disorder, Treatment-Resistant blood, Depressive Disorder, Treatment-Resistant drug therapy, Electroconvulsive Therapy methods, Hydrocortisone blood, Ketamine pharmacology, Kynurenine drug effects, Outcome Assessment, Health Care
- Abstract
Current first-line antidepressants can take weeks or months to decrease depressive symptoms. Low dose ketamine, an N-methyl-D-aspartate (NMDA) receptor antagonist, shows potential for a more rapid antidepressant effect, with efficacy also evident in previously treatment-resistant populations. However, a greater understanding of the physiological mechanisms underlying such effects is required. We assessed the potential impact of ketamine infusion on neurobiological drivers of kynurenine pathway metabolism in major depression (HPA axis hyperactivity, inflammation) in patients with treatment-resistant depression compared to gender-matched healthy controls. Furthermore, we assessed these biomarkers before and after electroconvulsive therapy (ECT), which is currently the gold standard for management of treatment-resistant depression. As previously demonstrated, treatment with ketamine and ECT was associated with improved depressive symptoms in patients. At baseline, waking cortisol output was greater in the ECT cohort, kynurenine was greater in the ketamine cohort, and kynurenic acid was lower in patients compared to healthy controls, although inflammatory markers (IL-6, IL-8, IL-10 or IFN-γ) were similar in patients and controls. Furthermore, in patients who responded to ECT, the cortisol awakening response was decreased following treatment. Despite a trend towards reduced kynurenine concentrations in those who responded to ketamine, ketamine was not associated with significant alterations in any of the biomarkers assessed., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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26. Impact of short-term cycle ergometer training on quality of life, cognition and depressive symptomatology in multiple sclerosis patients: a pilot study.
- Author
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Barry A, Cronin O, Ryan AM, Sweeney B, O'Toole O, Allen AP, Clarke G, O'Halloran KD, and Downer EJ
- Subjects
- Adult, Body Mass Index, Body Weight, Depression physiopathology, Exercise psychology, Female, Humans, Immunologic Factors therapeutic use, Male, Multiple Sclerosis physiopathology, Neuropsychological Tests, Physical Fitness, Pilot Projects, Treatment Outcome, Cognition, Depression therapy, Exercise Therapy instrumentation, Multiple Sclerosis psychology, Multiple Sclerosis therapy, Quality of Life
- Abstract
In this pilot study, we investigate whether a routine cycle ergometry training programme has therapeutic potential in individuals with multiple sclerosis (MS) by improving quality of life (QOL) and depressive symptomatology, while ameliorating cognitive disturbances. Healthy volunteers and MS patients cycled for 30 min at 65-75% age-predicted maximal heart rate on a recumbent ergometer, with this session repeated twice a week for 8 weeks. QOL, depressive symptomatology and cognitive function were assessed pre- and post-exercise using the MS Quality of Life-54 (MSQOL-54) questionnaire, 16-item Quick Inventory of Depressive Symptomatology (QIDS-SR
16 ) questionnaire and the Cambridge Neuropsychological Test Automated Battery (CANTAB), respectively. We determined that QOL was lower in MS patients, compared to healthy subjects, with a reduction in physical and mental health summary scores observed. Exercise improved both physical and mental health scores in MS patients. In support of this, exercise was shown to reduce depressive symptomatology in MS patients. Exercise was also associated with an improvement in visual sustained attention, executive function/cognitive flexibility and hippocampal-dependent visuospatial memory in patients. Overall, this study identifies a short-term exercise programme that improves physical and mental health, while reducing depressive symptomatology and cognitive dysfunction in MS.- Published
- 2018
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27. Autobiographical memory, the ageing brain and mechanisms of psychological interventions.
- Author
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Allen AP, Doyle C, Commins S, and Roche RAP
- Subjects
- Aged, Aged, 80 and over, Brain physiopathology, Cognitive Behavioral Therapy methods, Cognitive Behavioral Therapy trends, Dementia physiopathology, Dementia psychology, Dementia therapy, Executive Function physiology, Humans, Memory Disorders therapy, Aging physiology, Aging psychology, Brain physiology, Memory Disorders physiopathology, Memory Disorders psychology, Memory, Episodic
- Abstract
Elucidating the impact of healthy cognitive ageing and dementia on autobiographical memory (AM) may help deepen our theoretical understanding of memory and underlying neural changes. The distinction between episodic and semantic autobiographical memory is particularly informative in this regard. Psychological interventions, particularly those involving reminiscence or music, have led to differential effects on episodic and semantic autobiographical memory. We propose that executive function is a key mediator of psychological therapies on autobiographical memory. We also highlight that interventions that alleviate stress and improve mood, including in major depression, can enhance autobiographical memory. Future research employing more longitudinal approaches and examining moderating factors such as gender and education level will deepen our understanding of changes in AM in later life, enhance our theoretical understanding of the neuroscience of AM and ageing, and help to develop better targeted interventions for preserving AM in older adults., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2018
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28. Using Traits to Assess Nontransitivity of Interactions among Coral Species.
- Author
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Precoda K, Allen AP, Grant L, and Madin JS
- Subjects
- Animals, Geography, Anthozoa, Biodiversity, Phenotype
- Abstract
Simulations and experiments have shown that species coexistence can be maintained via nontransitive competition, of which a simple case is the rock-paper-scissors game. Reef-building corals exemplify high biodiversity competing for a few limiting resources via several mechanisms. Thus, corals represent fertile ground for exploring competition and nontransitivity. This article aimed to test hypotheses about the effects of species-level traits on competitive outcomes, specifically, that more upright growth, larger corallites, smaller ranges, and difference in commonness co-occur with competitive superiority. Further aims were to test whether closely related species show less predictable competitive outcomes and greater nontransitivity and to examine the level of nontransitivity among a large number of species. These goals were addressed by fitting a mixed-effects model to outcomes of 2,322 interspecific interactions. Among species-level traits, corallite width had the greatest impact on outcome, followed by geographical range size, growth form, and the typical commonness of conspecifics in assemblages. These fixed effects had smaller estimated impacts than a random effect associated with species pair, suggesting a primary role for idiosyncratic species-pair or other factors. Closely related species had more variable, less predictable interaction outcomes. Nearly a quarter of three-way species relations were nontransitive. The observed degree of competitive nontransitivity and extent of idiosyncratic species-pair effects together provide an empirical baseline for further investigations of mechanisms of species coexistence.
- Published
- 2017
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29. Bifidobacterium infantis 35624 and other probiotics in the management of irritable bowel syndrome. Strain specificity, symptoms, and mechanisms.
- Author
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Allen AP, Clarke G, Cryan JF, Quigley EMM, and Dinan TG
- Subjects
- Bifidobacterium, Humans, Probiotics, Sensitivity and Specificity, Treatment Outcome, Bifidobacterium longum subspecies infantis, Irritable Bowel Syndrome
- Published
- 2017
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30. A psychology of the human brain-gut-microbiome axis.
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Allen AP, Dinan TG, Clarke G, and Cryan JF
- Abstract
In recent years, we have seen increasing research within neuroscience and biopsychology on the interactions between the brain, the gastrointestinal tract, the bacteria within the gastrointestinal tract, and the bidirectional relationship between these systems: the brain-gut-microbiome axis. Although research has demonstrated that the gut microbiota can impact upon cognition and a variety of stress-related behaviours, including those relevant to anxiety and depression, we still do not know how this occurs. A deeper understanding of how psychological development as well as social and cultural factors impact upon the brain-gut-microbiome axis will contextualise the role of the axis in humans and inform psychological interventions that improve health within the brain-gut-microbiome axis. Interventions ostensibly aimed at ameliorating disorders in one part of the brain-gut-microbiome axis (e.g., psychotherapy for depression) may nonetheless impact upon other parts of the axis (e.g., microbiome composition and function), and functional gastrointestinal disorders such as irritable bowel syndrome represent a disorder of the axis, rather than an isolated problem either of psychology or of gastrointestinal function. The discipline of psychology needs to be cognisant of these interactions and can help to inform the future research agenda in this emerging field of research. In this review, we outline the role psychology has to play in understanding the brain-gut-microbiome axis, with a focus on human psychology and the use of research in laboratory animals to model human psychology.
- Published
- 2017
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31. Lost in translation? The potential psychobiotic Lactobacillus rhamnosus (JB-1) fails to modulate stress or cognitive performance in healthy male subjects.
- Author
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Kelly JR, Allen AP, Temko A, Hutch W, Kennedy PJ, Farid N, Murphy E, Boylan G, Bienenstock J, Cryan JF, Clarke G, and Dinan TG
- Subjects
- Adult, Brain drug effects, Cognition physiology, Cross-Over Studies, Cytokines blood, Double-Blind Method, Electroencephalography, Healthy Volunteers, Humans, Hydrocortisone analysis, Male, Neuropsychological Tests, Probiotics therapeutic use, Saliva chemistry, Stress, Psychological psychology, Young Adult, Attention drug effects, Cognition drug effects, Lacticaseibacillus rhamnosus, Probiotics administration & dosage, Stress, Psychological drug therapy
- Abstract
Background: Preclinical studies have identified certain probiotics as psychobiotics - live microorganisms with a potential mental health benefit. Lactobacillus rhamnosus (JB-1) has been shown to reduce stress-related behaviour, corticosterone release and alter central expression of GABA receptors in an anxious mouse strain. However, it is unclear if this single putative psychobiotic strain has psychotropic activity in humans. Consequently, we aimed to examine if these promising preclinical findings could be translated to healthy human volunteers., Objectives: To determine the impact of L. rhamnosus on stress-related behaviours, physiology, inflammatory response, cognitive performance and brain activity patterns in healthy male participants., Methods: An 8week, randomized, placebo-controlled, cross-over design was employed. Twenty-nine healthy male volunteers participated. Participants completed self-report stress measures, cognitive assessments and resting electroencephalography (EEG). Plasma IL10, IL1β, IL6, IL8 and TNFα levels and whole blood Toll-like 4 (TLR-4) agonist-induced cytokine release were determined by multiplex ELISA. Salivary cortisol was determined by ELISA and subjective stress measures were assessed before, during and after a socially evaluated cold pressor test (SECPT)., Results: There was no overall effect of probiotic treatment on measures of mood, anxiety, stress or sleep quality and no significant effect of probiotic over placebo on subjective stress measures, or the HPA response to the SECPT. Visuospatial memory performance, attention switching, rapid visual information processing, emotion recognition and associated EEG measures did not show improvement over placebo. No significant anti-inflammatory effects were seen as assessed by basal and stimulated cytokine levels., Conclusions: L. rhamnosus was not superior to placebo in modifying stress-related measures, HPA response, inflammation or cognitive performance in healthy male participants. These findings highlight the challenges associated with moving promising preclinical studies, conducted in an anxious mouse strain, to healthy human participants. Future interventional studies investigating the effect of this psychobiotic in populations with stress-related disorders are required., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2017
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32. A systematic review of the psychobiological burden of informal caregiving for patients with dementia: Focus on cognitive and biological markers of chronic stress.
- Author
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Allen AP, Curran EA, Duggan Á, Cryan JF, Chorcoráin AN, Dinan TG, Molloy DW, Kearney PM, and Clarke G
- Subjects
- Biomarkers, Humans, Caregivers, Cognition, Dementia, Stress, Psychological
- Abstract
As the physiological impact of chronic stress is difficult to study in humans, naturalistic stressors are invaluable sources of information in this area. This review systematically evaluates the research literature examining biomarkers of chronic stress, including neurocognition, in informal dementia caregivers. We identified 151 papers for inclusion in the final review, including papers examining differences between caregivers and controls as well as interventions aimed at counteracting the biological burden of chronic caregiving stress. Results indicate that cortisol was increased in caregivers in a majority of studies examining this biomarker. There was mixed evidence for differences in epinephrine, norepinephrine and other cardiovascular markers. There was a high level of heterogeneity in immune system measures. Caregivers performed more poorly on attention and executive functioning tests. There was mixed evidence for memory performance. Interventions to reduce stress improved cognition but had mixed effects on cortisol. Risk of bias was generally low to moderate. Given the rising need for family caregivers worldwide, the implications of these findings can no longer be neglected., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2017
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33. Cognition About the Creative Process - Interview With Dr Andrew P. Allen.
- Author
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Allen AP and Loughnane L
- Abstract
What is the relationship between the creative process and cognition and perception? Lynda Loughnane, a master's student in Art and Process in Crawford College of Art and Design, Cork, Ireland interviewed Dr Andrew P. Allen about the subject. Areas covered include mindfulness, Type 1 and Type 2 thinking, stage theories of creativity, engagement with the art process and the artwork, phenomenology and consciousness with and without self report. The interview was constructed to cover a wide range of subject matter, so as to gather as much information as possible in layman's language about the cognitive process in relation to creativity and interaction with art., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2016
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34. The Trier Social Stress Test: Principles and practice.
- Author
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Allen AP, Kennedy PJ, Dockray S, Cryan JF, Dinan TG, and Clarke G
- Abstract
Researchers interested in the neurobiology of the acute stress response in humans require a valid and reliable acute stressor that can be used under experimental conditions. The Trier Social Stress Test (TSST) provides such a testing platform. It induces stress by requiring participants to make an interview-style presentation, followed by a surprise mental arithmetic test, in front of an interview panel who do not provide feedback or encouragement. In this review, we outline the methodology of the TSST, and discuss key findings under conditions of health and stress-related disorder. The TSST has unveiled differences in males and females, as well as different age groups, in their neurobiological response to acute stress. The TSST has also deepened our understanding of how genotype may moderate the cognitive neurobiology of acute stress, and exciting new inroads have been made in understanding epigenetic contributions to the biological regulation of the acute stress response using the TSST. A number of innovative adaptations have been developed which allow for the TSST to be used in group settings, with children, in combination with brain imaging, and with virtual committees. Future applications may incorporate the emerging links between the gut microbiome and the stress response. Future research should also maximise use of behavioural data generated by the TSST. Alternative acute stress paradigms may have utility over the TSST in certain situations, such as those that require repeat testing. Nonetheless, we expect that the TSST remains the gold standard for examining the cognitive neurobiology of acute stress in humans.
- Published
- 2016
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35. Bifidobacterium longum 1714 as a translational psychobiotic: modulation of stress, electrophysiology and neurocognition in healthy volunteers.
- Author
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Allen AP, Hutch W, Borre YE, Kennedy PJ, Temko A, Boylan G, Murphy E, Cryan JF, Dinan TG, and Clarke G
- Subjects
- Adult, Case-Control Studies, Cold Temperature, Electroencephalography drug effects, Female, Hippocampus drug effects, Humans, Hydrocortisone blood, Male, Mental Recall drug effects, Psychometrics statistics & numerical data, Stress Disorders, Traumatic, Acute diagnosis, Stress Disorders, Traumatic, Acute drug therapy, Stress Disorders, Traumatic, Acute psychology, Stress, Psychological complications, Arousal drug effects, Bifidobacterium longum, Brain drug effects, Cognition Disorders drug therapy, Cognition Disorders psychology, Neuropsychological Tests statistics & numerical data, Probiotics therapeutic use, Stress, Psychological drug therapy, Stress, Psychological psychology, Translational Research, Biomedical
- Abstract
The emerging concept of psychobiotics-live microorganisms with a potential mental health benefit-represents a novel approach for the management of stress-related conditions. The majority of studies have focused on animal models. Recent preclinical studies have identified the B. longum 1714 strain as a putative psychobiotic with an impact on stress-related behaviors, physiology and cognitive performance. Whether such preclinical effects could be translated to healthy human volunteers remains unknown. We tested whether psychobiotic consumption could affect the stress response, cognition and brain activity patterns. In a within-participants design, healthy volunteers (N=22) completed cognitive assessments, resting electroencephalography and were exposed to a socially evaluated cold pressor test at baseline, post-placebo and post-psychobiotic. Increases in cortisol output and subjective anxiety in response to the socially evaluated cold pressor test were attenuated. Furthermore, daily reported stress was reduced by psychobiotic consumption. We also observed subtle improvements in hippocampus-dependent visuospatial memory performance, as well as enhanced frontal midline electroencephalographic mobility following psychobiotic consumption. These subtle but clear benefits are in line with the predicted impact from preclinical screening platforms. Our results indicate that consumption of B. longum 1714 is associated with reduced stress and improved memory. Further studies are warranted to evaluate the benefits of this putative psychobiotic in relevant stress-related conditions and to unravel the mechanisms underlying such effects.
- Published
- 2016
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36. Concatenation of 'alert' and 'identity' segments in dingoes' alarm calls.
- Author
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Déaux EC, Allen AP, Clarke JA, and Charrier I
- Subjects
- Animals, Behavior, Animal, Female, Male, Canidae, Vocalization, Animal
- Abstract
Multicomponent signals can be formed by the uninterrupted concatenation of multiple call types. One such signal is found in dingoes, Canis familiaris dingo. This stereotyped, multicomponent 'bark-howl' vocalisation is formed by the concatenation of a noisy bark segment and a tonal howl segment. Both segments are structurally similar to bark and howl vocalisations produced independently in other contexts (e.g. intra- and inter-pack communication). Bark-howls are mainly uttered in response to human presence and were hypothesized to serve as alarm calls. We investigated the function of bark-howls and the respective roles of the bark and howl segments. We found that dingoes could discriminate between familiar and unfamiliar howl segments, after having only heard familiar howl vocalisations (i.e. different calls). We propose that howl segments could function as 'identity signals' and allow receivers to modulate their responses according to the caller's characteristics. The bark segment increased receivers' attention levels, providing support for earlier observational claims that barks have an 'alerting' function. Lastly, dingoes were more likely to display vigilance behaviours upon hearing bark-howl vocalisations, lending support to the alarm function hypothesis. Canid vocalisations, such as the dingo bark-howl, may provide a model system to investigate the selective pressures shaping complex communication systems.
- Published
- 2016
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37. Impact of Exercise on Innate Immunity in Multiple Sclerosis Progression and Symptomatology.
- Author
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Barry A, Cronin O, Ryan AM, Sweeney B, Yap SM, O'Toole O, Allen AP, Clarke G, O'Halloran KD, and Downer EJ
- Abstract
Multiple Sclerosis (MS), an idiopathic progressive immune-mediated neurological disorder of the central nervous system (CNS), is characterized by recurrent episodes of inflammatory demyelination and consequent axonal deterioration. It accounts for functional deterioration and lasting disability among young adults. A body of literature demonstrates that physical activity counteracts fatigue and depression and may improve overall quality of life in MS patients. Furthermore, much data indicates that exercise ameliorates chronic neuroinflammation and its related pathologies by tipping cytokine profiles toward an anti-inflammatory signature. Recent data has focused on the direct impact of exercise training on the innate immune system by targeting toll-like receptors (TLRs), signaling pattern recognition receptors that govern the innate immune response, shedding light on the physiological role of TLRs in health and disease. Indeed, TLRs continue to emerge as players in the neuroinflammatory processes underpinning MS. This review will highlight evidence that physical activity and exercise are potential immunomodulatory therapies, targeting innate signaling mechanism(s) to modulate MS symptom development and progression.
- Published
- 2016
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38. Energetic and ecological constraints on population density of reef fishes.
- Author
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Barneche DR, Kulbicki M, Floeter SR, Friedlander AM, and Allen AP
- Subjects
- Animals, Biodiversity, Fishes classification, Models, Biological, Population Density, Coral Reefs, Energy Metabolism physiology, Fishes physiology
- Abstract
Population ecology has classically focused on pairwise species interactions, hindering the description of general patterns and processes of population abundance at large spatial scales. Here we use the metabolic theory of ecology as a framework to formulate and test a model that yields predictions linking population density to the physiological constraints of body size and temperature on individual metabolism, and the ecological constraints of trophic structure and species richness on energy partitioning among species. Our model was tested by applying Bayesian quantile regression to a comprehensive reef-fish community database, from which we extracted density data for 5609 populations spread across 49 sites around the world. Our results indicate that population density declines markedly with increases in community species richness and that, after accounting for richness, energetic constraints are manifested most strongly for the most abundant species, which generally are of small body size and occupy lower trophic groups. Overall, our findings suggest that, at the global scale, factors associated with community species richness are the major drivers of variation in population density. Given that populations of species-rich tropical systems exhibit markedly lower maximum densities, they may be particularly susceptible to stochastic extinction., (© 2016 The Author(s).)
- Published
- 2016
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39. Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton.
- Author
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Yvon-Durocher G, Allen AP, Cellamare M, Dossena M, Gaston KJ, Leitao M, Montoya JM, Reuman DC, Woodward G, and Trimmer M
- Subjects
- Animals, Aquaculture, England, Hot Temperature adverse effects, Phytoplankton isolation & purification, Poisson Distribution, Seasons, Zooplankton growth & development, Zooplankton isolation & purification, Biodiversity, Climate Change, Models, Biological, Phytoplankton growth & development, Up-Regulation
- Abstract
Phytoplankton are key components of aquatic ecosystems, fixing CO2 from the atmosphere through photosynthesis and supporting secondary production, yet relatively little is known about how future global warming might alter their biodiversity and associated ecosystem functioning. Here, we explore how the structure, function, and biodiversity of a planktonic metacommunity was altered after five years of experimental warming. Our outdoor mesocosm experiment was open to natural dispersal from the regional species pool, allowing us to explore the effects of experimental warming in the context of metacommunity dynamics. Warming of 4°C led to a 67% increase in the species richness of the phytoplankton, more evenly-distributed abundance, and higher rates of gross primary productivity. Warming elevated productivity indirectly, by increasing the biodiversity and biomass of the local phytoplankton communities. Warming also systematically shifted the taxonomic and functional trait composition of the phytoplankton, favoring large, colonial, inedible phytoplankton taxa, suggesting stronger top-down control, mediated by zooplankton grazing played an important role. Overall, our findings suggest that temperature can modulate species coexistence, and through such mechanisms, global warming could, in some cases, increase the species richness and productivity of phytoplankton communities.
- Published
- 2015
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40. Serum BDNF as a peripheral biomarker of treatment-resistant depression and the rapid antidepressant response: A comparison of ketamine and ECT.
- Author
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Allen AP, Naughton M, Dowling J, Walsh A, Ismail F, Shorten G, Scott L, McLoughlin DM, Cryan JF, Dinan TG, and Clarke G
- Subjects
- Adult, Antidepressive Agents administration & dosage, Biomarkers blood, Case-Control Studies, Depressive Disorder, Treatment-Resistant blood, Diagnostic and Statistical Manual of Mental Disorders, Female, Humans, Infusions, Intravenous, Male, Middle Aged, Time Factors, Treatment Outcome, Brain-Derived Neurotrophic Factor blood, Depressive Disorder, Treatment-Resistant therapy, Electroconvulsive Therapy methods, Excitatory Amino Acid Antagonists administration & dosage, Ketamine administration & dosage
- Abstract
Background: Ketamine is associated with rapid antidepressant efficacy but the biological mechanisms underpinning this effect are unclear. Serum brain-derived neurotrophic factor (sBDNF) is a potential circulating biomarker of treatment-resistant depression (TRD) and ketamine response but it is unclear if this is a common target of both ketamine and electroconvulsive therapy (ECT), the current gold standard for TRD. Moreover, the impact of multiple ketamine infusions on sBDNF has not yet been established., Methods: Thirty five TRD patients with a current DSM-IV diagnosis of recurrent depressive disorder received up to 12 ECT sessions (N=17) or up to three intravenous infusions of low-dose (0.5mg/kg) ketamine (N=18). Blood samples were taken over the course of the study for assessment of sBDNF. Symptom severity and response were monitored using the 17-item Hamilton Depression Rating Scale (HDRS). sBDNF was assessed in 20 healthy controls to allow comparison with TRD patients., Results: As expected, sBDNF was lower in TRD patients at baseline compared to healthy controls. Ketamine and ECT treatment were both associated with significant reductions in depressive symptoms. However, sBDNF was significantly elevated only at one week following the first ketamine infusion in those classified as responders one week later. sBDNF was not elevated following subsequent infusions. ECT reduced depressive symptoms, as expected, but was not associated with an enhancement in BDNF., Limitations: Patients continued with their psychotropic medications throughout this trial., Conclusions: SBDNF normalisation does not appear to be a prerequisite for symptomatic improvement in TRD following ketamine or ECT treatment., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2015
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41. Embracing general theory and taxon-level idiosyncrasies to explain nutrient recycling.
- Author
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Barneche DR and Allen AP
- Subjects
- Animals, Defecation physiology, Fishes physiology, Food Chain, Invertebrates physiology, Metabolic Networks and Pathways physiology, Models, Biological
- Published
- 2015
- Full Text
- View/download PDF
42. Acute tryptophan depletion reduces kynurenine levels: implications for treatment of impaired visuospatial memory performance in irritable bowel syndrome.
- Author
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Kennedy PJ, Allen AP, O'Neill A, Quigley EM, Cryan JF, Dinan TG, and Clarke G
- Subjects
- Adolescent, Adult, Cross-Over Studies, Double-Blind Method, Female, Hippocampus metabolism, Humans, Irritable Bowel Syndrome psychology, Irritable Bowel Syndrome therapy, Memory Disorders psychology, Memory Disorders therapy, Treatment Outcome, Tryptophan deficiency, Young Adult, Irritable Bowel Syndrome blood, Kynurenine blood, Memory Disorders blood, Photic Stimulation methods, Psychomotor Performance physiology, Tryptophan blood
- Abstract
Rationale: A visuospatial episodic memory impairment has recently been identified in irritable bowel syndrome. Increased tryptophan metabolism along the kynurenine pathway has also been reported in irritable bowel syndrome, which may play a role in altered cognitive performance as peripheral kynurenine can cross the blood brain barrier and lead to the production of neuroactive metabolites, which modulate glutamatergic and cholinergic signalling, key neurotransmitter systems involved in cognitive function., Objectives: Utilising the acute tryptophan depletion (ATD) protocol, the aim of this study was to examine if manipulating peripheral levels of tryptophan regulates cognitive performance in irritable bowel syndrome and also to determine for the first time if the ATD protocol alters kynurenine supply to the central nervous system., Methods: In this double-blind, placebo-controlled, crossover design study, nine female patients with irritable bowel syndrome and 14 matched female healthy controls participant completed a range of tests from the CANTAB(®) following ATD and placebo. Plasma tryptophan and kynurenine, self-report measures of gastrointestinal symptoms, mood and arousal were determined pre- and post-treatment on each study day., Results: Following placebo (p = 0.016) but not ATD (p > 0.05), patients with irritable bowel syndrome exhibited impaired visuospatial memory performance (Paired Associates Learning (PAL) test). In addition, ATD significantly decreased (p < 0.001) and placebo significantly increased (p < 0.001) plasma kynurenine levels in both groups., Conclusions: Manipulating peripheral tryptophan and kynurenine levels using ATD modulates hippocampal-mediated cognitive performance in irritable bowel syndrome but not healthy controls. These data may have important implications for reducing cognitive impairment in irritable bowel syndrome.
- Published
- 2015
- Full Text
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43. Chewing gum: cognitive performance, mood, well-being, and associated physiology.
- Author
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Allen AP and Smith AP
- Subjects
- Adolescent, Adult, Female, Humans, Male, Affect physiology, Chewing Gum, Cognition physiology, Mastication, Psychomotor Performance physiology
- Abstract
Recent evidence has indicated that chewing gum can enhance attention, as well as promoting well-being and work performance. Four studies (two experiments and two intervention studies) examined the robustness of and mechanisms for these effects. Study 1 investigated the acute effect of gum on mood in the absence of task performance. Study 2 examined the effect of rate and force of chewing on mood and attention performance. Study 3 assessed the effects of chewing gum during one working day on well-being and performance, as well as postwork mood and cognitive performance. In Study 4, performance and well-being were reported throughout the workday and at the end of the day, and heart rate and cortisol were measured. Under experimental conditions, gum was associated with higher alertness regardless of whether performance tasks were completed and altered sustained attention. Rate of chewing and subjective force of chewing did not alter mood but had some limited effects on attention. Chewing gum during the workday was associated with higher productivity and fewer cognitive problems, raised cortisol levels in the morning, and did not affect heart rate. The results emphasise that chewing gum can attenuate reductions in alertness, suggesting that chewing gum enhances worker performance.
- Published
- 2015
- Full Text
- View/download PDF
44. Scaling metabolism from individuals to reef-fish communities at broad spatial scales.
- Author
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Barneche DR, Kulbicki M, Floeter SR, Friedlander AM, Maina J, and Allen AP
- Subjects
- Animals, Biomass, Population Density, Ecosystem, Energy Metabolism, Fishes metabolism, Models, Biological
- Abstract
Fishes contribute substantially to energy and nutrient fluxes in reef ecosystems, but quantifying these roles is challenging. Here, we do so by synthesising a large compilation of fish metabolic-rate data with a comprehensive database on reef-fish community abundance and biomass. Individual-level analyses support predictions of Metabolic Theory after accounting for significant family-level variation, and indicate that some tropical reef fishes may already be experiencing thermal regimes at or near their temperature optima. Community-level analyses indicate that total estimated respiratory fluxes of reef-fish communities increase on average ~2-fold from 22 to 28 °C. Comparisons of estimated fluxes among trophic groups highlight striking differences in resource use by communities in different regions, perhaps partly reflecting distinct evolutionary histories, and support the hypothesis that piscivores receive substantial energy subsidies from outside reefs. Our study demonstrates one approach to synthesising individual- and community-level data to establish broad-scale trends in contributions of biota to ecosystem dynamics., (© 2014 John Wiley & Sons Ltd/CNRS.)
- Published
- 2014
- Full Text
- View/download PDF
45. Effects and after-effects of chewing gum on vigilance, heart rate, EEG and mood.
- Author
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Allen AP, Jacob TJ, and Smith AP
- Subjects
- Adult, Electroencephalography, Female, Habits, Humans, Male, Psychomotor Performance, Reaction Time, Time Factors, Visual Analog Scale, Young Adult, Affect physiology, Arousal physiology, Brain Waves physiology, Chewing Gum, Heart Rate physiology, Mastication physiology
- Abstract
Research has shown that chewing gum improves attention, although the mechanism for this effect remains unclear. This study investigated the effects and after-effects of chewing gum on vigilance, mood, heart rate and EEG. Participants completed a vigilance task four times; at baseline, with or without chewing gum, and twice post-chewing. EEG alpha and beta power at left frontal and temporal lobes, subjective mood and heart rate were assessed. Chewing gum shortened reaction time and increased the rate of hits, although hits fell during the second post-chewing task. Chewing gum heightened heart rate, but only during chewing. Gum also increased beta power at F7 and T3 immediately post-chewing, but not following the post-chewing tasks. The findings show that chewing gum affects several different indicators of alertness., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
46. Methane fluxes show consistent temperature dependence across microbial to ecosystem scales.
- Author
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Yvon-Durocher G, Allen AP, Bastviken D, Conrad R, Gudasz C, St-Pierre A, Thanh-Duc N, and del Giorgio PA
- Subjects
- Anaerobiosis, Aquatic Organisms metabolism, Atmosphere chemistry, Carbon Cycle, Carbon Dioxide analysis, Cell Respiration, Geologic Sediments microbiology, Greenhouse Effect, Methane analysis, Oryza metabolism, Photosynthesis, Seasons, Wetlands, Archaea metabolism, Ecosystem, Global Warming, Methane metabolism, Temperature
- Abstract
Methane (CH4) is an important greenhouse gas because it has 25 times the global warming potential of carbon dioxide (CO2) by mass over a century. Recent calculations suggest that atmospheric CH4 emissions have been responsible for approximately 20% of Earth's warming since pre-industrial times. Understanding how CH4 emissions from ecosystems will respond to expected increases in global temperature is therefore fundamental to predicting whether the carbon cycle will mitigate or accelerate climate change. Methanogenesis is the terminal step in the remineralization of organic matter and is carried out by strictly anaerobic Archaea. Like most other forms of metabolism, methanogenesis is temperature-dependent. However, it is not yet known how this physiological response combines with other biotic processes (for example, methanotrophy, substrate supply, microbial community composition) and abiotic processes (for example, water-table depth) to determine the temperature dependence of ecosystem-level CH4 emissions. It is also not known whether CH4 emissions at the ecosystem level have a fundamentally different temperature dependence than other key fluxes in the carbon cycle, such as photosynthesis and respiration. Here we use meta-analyses to show that seasonal variations in CH4 emissions from a wide range of ecosystems exhibit an average temperature dependence similar to that of CH4 production derived from pure cultures of methanogens and anaerobic microbial communities. This average temperature dependence (0.96 electron volts (eV)), which corresponds to a 57-fold increase between 0 and 30°C, is considerably higher than previously observed for respiration (approximately 0.65 eV) and photosynthesis (approximately 0.3 eV). As a result, we show that both the emission of CH4 and the ratio of CH4 to CO2 emissions increase markedly with seasonal increases in temperature. Our findings suggest that global warming may have a large impact on the relative contributions of CO2 and CH4 to total greenhouse gas emissions from aquatic ecosystems, terrestrial wetlands and rice paddies.
- Published
- 2014
- Full Text
- View/download PDF
47. Biological and psychological markers of stress in humans: focus on the Trier Social Stress Test.
- Author
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Allen AP, Kennedy PJ, Cryan JF, Dinan TG, and Clarke G
- Subjects
- Biomarkers, Humans, Mental Disorders diagnosis, Mental Disorders physiopathology, Mental Disorders therapy, Psychological Tests, Stress, Psychological physiopathology, Stress, Psychological psychology
- Abstract
Validated biological and psychological markers of acute stress in humans are an important tool in translational research. The Trier Social Stress Test (TSST), involving public interview and mental arithmetic performance, is among the most popular methods of inducing acute stress in experimental settings, and reliably increases hypothalamic-pituitary-adrenal axis activation. However, although much research has focused on HPA axis activity, the TSST also affects the sympathetic-adrenal-medullary system, the immune system, cardiovascular outputs, gastric function and cognition. We critically assess the utility of different biological and psychological markers, with guidance for future research, and discuss factors which can moderate TSST effects. We outline the effects of the TSST in stress-related disorders, and if these responses can be abrogated by pharmacological and psychological treatments. Modified TSST protocols are discussed, and the TSST is compared to alternative methods of inducing acute stress. Our analysis suggests that multiple readouts are necessary to derive maximum information; this strategy will enhance our understanding of the psychobiology of stress and provide the means to assess novel therapeutic agents., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
48. Adult and larval traits as determinants of geographic range size among tropical reef fishes.
- Author
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Luiz OJ, Allen AP, Robertson DR, Floeter SR, Kulbicki M, Vigliola L, Becheler R, and Madin JS
- Subjects
- Analysis of Variance, Animals, Geography, Larva physiology, Likelihood Functions, Oceans and Seas, Reproduction physiology, Species Specificity, Tropical Climate, Animal Distribution physiology, Body Size physiology, Coral Reefs, Fishes physiology, Social Behavior
- Abstract
Most marine organisms disperse via ocean currents as larvae, so it is often assumed that larval-stage duration is the primary determinant of geographic range size. However, empirical tests of this relationship have yielded mixed results, and alternative hypotheses have rarely been considered. Here we assess the relative influence of adult and larval-traits on geographic range size using a global dataset encompassing 590 species of tropical reef fishes in 47 families, the largest compilation of such data to date for any marine group. We analyze this database using linear mixed-effect models to control for phylogeny and geographical limits on range size. Our analysis indicates that three adult traits likely to affect the capacity of new colonizers to survive and establish reproductive populations (body size, schooling behavior, and nocturnal activity) are equal or better predictors of geographic range size than pelagic larval duration. We conclude that adult life-history traits that affect the postdispersal persistence of new populations are primary determinants of successful range extension and, consequently, of geographic range size among tropical reef fishes.
- Published
- 2013
- Full Text
- View/download PDF
49. Reply to Aze et al.: Distinguishing speciation modes based on multiple lines of evidence.
- Author
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Strotz LC and Allen AP
- Subjects
- Biological Evolution, Fossils, Genetic Speciation
- Published
- 2013
- Full Text
- View/download PDF
50. Assessing the role of cladogenesis in macroevolution by integrating fossil and molecular evidence.
- Author
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Strotz LC and Allen AP
- Subjects
- Biological Evolution, Fossils, Genetic Speciation
- Abstract
Assessing the extent to which population subdivision during cladogenesis is necessary for long-term phenotypic evolution is of fundamental importance in a broad range of biological disciplines. Differentiating cladogenesis from anagenesis, defined as evolution within a species, has generally been hampered by dating precision, insufficient fossil data, and difficulties in establishing a direct link between morphological changes detectable in the fossil record and biological species. Here we quantify the relative frequencies of cladogenesis and anagenesis for macroperforate planktic Foraminifera, which arguably have the most complete fossil record currently available, to address this question. Analyzing this record in light of molecular evidence, while taking into account the precision of fossil dating techniques, we estimate that the fraction of speciation events attributable to anagenesis is <19% during the Cenozoic era (last 65 Myr) and <10% during the Neogene period (last 23 Myr). Our central conclusion--that cladogenesis is the predominant mode by which new planktic Foraminifera taxa become established at macroevolutionary time scales--differs markedly from the conclusion reached in a recent study based solely on fossil data. These disparate findings demonstrate that interpretations of macroevolutionary dynamics in the fossil record can be fundamentally altered in light of genetic evidence.
- Published
- 2013
- Full Text
- View/download PDF
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