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1. Low-Cost Tree Crown Dieback Estimation Using Deep Learning-Based Segmentation

Author

Allen, M. J., Moreno-Fernández, D., Ruiz-Benito, P., Grieve, S. W. D., and Lines, E. R.

Subjects
Computer Science - Computer Vision and Pattern Recognition, I.4, I.4.6, I.4.8, I.4.9, I.5, I.5.4
Abstract

The global increase in observed forest dieback, characterised by the death of tree foliage, heralds widespread decline in forest ecosystems. This degradation causes significant changes to ecosystem services and functions, including habitat provision and carbon sequestration, which can be difficult to detect using traditional monitoring techniques, highlighting the need for large-scale and high-frequency monitoring. Contemporary developments in the instruments and methods to gather and process data at large-scales mean this monitoring is now possible. In particular, the advancement of low-cost drone technology and deep learning on consumer-level hardware provide new opportunities. Here, we use an approach based on deep learning and vegetation indices to assess crown dieback from RGB aerial data without the need for expensive instrumentation such as LiDAR. We use an iterative approach to match crown footprints predicted by deep learning with field-based inventory data from a Mediterranean ecosystem exhibiting drought-induced dieback, and compare expert field-based crown dieback estimation with vegetation index-based estimates. We obtain high overall segmentation accuracy (mAP: 0.519) without the need for additional technical development of the underlying Mask R-CNN model, underscoring the potential of these approaches for non-expert use and proving their applicability to real-world conservation. We also find colour-coordinate based estimates of dieback correlate well with expert field-based estimation. Substituting ground truth for Mask R-CNN model predictions showed negligible impact on dieback estimates, indicating robustness. Our findings demonstrate the potential of automated data collection and processing, including the application of deep learning, to improve the coverage, speed and cost of forest dieback monitoring., Comment: 16 pages, 5 figures

Published
2024

2. Effects of Chemical Alteration on Frictional Properties in a Deep, Granitic, Geothermal System in Cornwall: Direct Shear Experiments at Near In Situ Conditions.

Author

Harpers, N., Forbes Inskip, N., Allen, M. J., Buckman, J., Faulkner, D. R., Claes, H., Shail, R., den Hartog, S., and Busch, A.

Subjects
INDUCED seismicity, SEISMIC waves, GEOTHERMAL resources, GRANITE, RENEWABLE energy sources
Abstract

The geochemical alteration of host rocks might affect the productivity and the potential for induced seismicity of geothermal systems. In addition to natural alteration, following production and heat extraction, re‐injected fluids at lower temperatures and different pressures may be in chemical disequilibrium with the rock, impacting mineral solubility and dissolution/precipitation processes. In this study, we investigate the effect of geochemical alteration on the frictional behavior of granites, and their seismogenic potential, by conducting direct shear experiments using samples with varying degrees of alteration. The samples originate from the Carnmenellis granite in Cornwall, SW England, and represent the formation used in the United Downs Deep Geothermal Power Project for heat extraction. Experiments were conducted on granite powders (referred to as gouges) at room temperature and 180°C, at simulated in situ confining and pore pressures of 130 and 50 MPa, respectively (∼5 km depth). With increasing degree of alteration, the frictional strength of the gouges decreases while frictional stability increases. At high temperature, frictional stability is reduced for all samples while maintaining the trend with alteration stage. Microstructural investigation of the sheared gouges shows alteration delocalizes shear by reducing grain size and increasing clay fraction, which promotes the formation of pervasive shear fabrics. Our work suggests that, within the range of tested pressures, more alteration of granite initially causes more stable shearing in a fault. This behavior with alteration is sustained at high temperatures, but the overall frictional stability is reduced which increases the potential for induced seismicity at higher temperatures. Plain Language Summary: Geothermal systems are of high interest as renewable energy source. However, hot fluids in the deep subsurface can chemically react with the host rock they flow through. These reactions then affect the fluid chemistry and the rock mineral composition. With changes in mineral composition, changes in mechanical and hydraulic properties are observed. We test the effects of a specific group of reactions (argillic alteration) on the frictional properties of granite powders by using an example rock that is targeted in geothermal projects in Cornwall, SW England. The frictional properties give information about how likely it is for granitic rocks to produce an earthquake while sliding. Our tests show that the more the granite has chemically changed, the easier the powder is to slide but the more stably it will slide. This means that chemically changed powders are less likely to create seismic waves on sliding. In addition, tests at high temperature (180°C) showed the same stabilizing effect within the reacted rocks but the general sliding stability was reduced over all samples. This implies that the potential for earthquakes is higher at higher temperatures, although the analyzed chemical reactions reduce this potential in granitic geothermal systems. Key Points: Large fault systems are targeted at depth as geothermal reservoirs in high‐heat producing granites in CornwallDirect shear experiments were conducted on a series of successively more naturally altered granites from a fault in Carnmenellis graniteAlteration makes sliding more likely but also more stable, while higher temperatures destabilize shearing [ABSTRACT FROM AUTHOR]

Published
2024
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3. Detection of hypoxia in human brain tumor xenografts using a modified comet assay

Author

Wang, J L, Klem, J, Wyrick, J B, Ozawa, T, Cunningham, E, Golinveaux, J, Allen, M J, Lamborn, K R, and Deen, D F

Subjects
hypoxia, comet assay, brain tumor cells, oxygen enhancement ratio, human tumor xenografts
Abstract

We used the standard comet assay successfully to generate in vitro dose-response curves under oxic and hypoxic conditions. We then made mixtures of cells that had been irradiated with 3 and 9 Gy of X-rays to simulate two subpopulations in a tumor, but efforts to accurately detect and quantify the subpopulations using the standard comet assay were unsuccessful. Therefore, we investigated a modified comet assay to determine whether it could be used for measuring hypoxia in our model systems. U251 MG cells were grown as subcutaneous tumors in athymic mice; U251 MG and U87 MG cells were grown as intracerebral (i.c.) tumors in athymic rats. Animals were injected with RSU 1069, irradiated, and euthanized. Tumors and normal brains were removed, and the cells were analyzed using a modified comet assay. Differences in comet tail moment distributions between tumor and contralateral normal brain, using tail moments at either the 25th or 50th percentile in each distribution, were taken as measures of the degree of tumor hypoxia. For U251 MG tumors, there was a positive relationship between tumor size and the degree of hypoxia, whereas preliminary data from U87 MG i.c. tumors showed less hypoxia and no apparent relationship between tumor size and hypoxia.

Published
2003

6. The Phycodnaviridae: The Story of How Tiny Giants Rule the World

Author

Wilson, W. H., Van Etten, James L., Allen, M. J., Compans, Richard W., editor, Cooper, Max D., editor, Honjo, Tasuku, editor, Koprowski, Hilary, editor, Melchers, Fritz, editor, Oldstone, Michael B. A., editor, Olsnes, Sjur, editor, Vogt, Peter K., editor, and Van Etten, James L., editor

Published
2009
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9. Assessment of the Acceptability and Costs of Interactive Videoconferencing for Continuing Medical Education in Nova Scotia.

Author

Langille, D. B., Sargeant, J. M., and Allen, M. J.

Abstract

Two rural and two urban sites in Nova Scotia received continuing medical education via interactive videoconferencing. Although limited bandwidth and video and sound quality were concerns, 72% of 46 participants felt it was as effective as face-to-face instruction and appreciated not having to travel or lose work time. (SK)

Published
1998

13. Bone density of the humeral condyle in Labrador retrievers with medial coronoid process disease.

Author

Gander Soares, D., Allen, M. J., and Burton, N. J.

Subjects
ELBOW, LABRADOR retriever, HUMERUS, BONE density, COMPUTED tomography
Abstract

Objectives: To estimate, using CT imaging, differences in the regional bone density of the humeral condyle in Labrador retriever elbows with and without medial coronoid process disease. Materials and Methods: The elbows of Labrador Retrievers that had undergone CT were reviewed. Scans were divided into three categories: elbows without medial coronoid process disease; elbows with medial coronoid process disease involving fragmentation of the radial incisure; elbows with medial coronoid process disease involving fragmentation of the medial coronoid apex. A templating technique was employed to define the weight‐bearing regions of the medial and lateral portion of the humeral condyle and estimates of volumetric bone density (defined by Hounsfield unit measurement) were compared across the three groups. Results: CT evaluation was performed on 122 elbows in 81 dogs. There was a higher mean Hounsfield unit measurement in the medial and lateral portions of the humeral condyles in elbows with medial coronoid process disease involving fragmentation of the medial coronoid apex compared with elbows with medial coronoid process disease involving fragmentation of the radial incisure. Clinical Significance: Dogs with apical fragmentation of the medial coronoid process exhibited significantly higher estimated bone mineral density within the medial portion of the humeral condyle when compared to dogs with radial incisure fragmentation. The medial portion of the humeral condyle may be associated with the pathogenesis of apical but not radial incisure medial coronoid process fragmentation in Labrador Retrievers. [ABSTRACT FROM AUTHOR]

Published
2022
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19. Chemistry of Wine Flavor

Author

ANDREW L. WATERHOUSE, SUSAN E. EBELER, Peter Winterhalter, Beate Baderschneider, Bernd Bonnländer, I. Leigh Francis, Stella Kassara, Ann C. Noble, Patrick J. Williams, M. S. Allen, M. J. Lacey, H. Guth, G. E. Krammer, M. Güntert, S. Lambrecht, H. Sommer, P. Werkhoff, J. Kaulen, A. Rapp, J. H. Thorng

Published
1998

28. Irish society of gastroenterology: Proceedings of meeting held Friday 12th and Saturday 13th June, 1998

Author

Ryan, B. M., McKiernan, S., Keeling, P. W. N., Byrne, P. J., Quill, R., McCallion, K., Mitchell, R. M. S., Watson, R. G. P., Collins, J. S. A., Gardiner, K. R., Winter, D. C., O’Sullivan, G. C., Taylor, C. T., Fanning, N. F., Redmond, H. P., O’Donoghue, D. P., Baird, A. W., Harvey, B. J., Brannigan, A. E., O’Connell, P. R., Regan, M. C., Fitzpatrick, J. M., Watson, R. W. G., Lemass, H., Ryan, E., MacMathuna, P., Crowe, J., O’Keane, J. C., Goh, J., MacMathuna, P., Baird, A., Maher, L., Godson, C., Brady, H. R., Petasis, N. A., Fokin, V. V., O’Keane, J. C., Barry, M. K., Grant, D. C., Sheahan, K., O’Donoghue, D. P., Hyland, J. M. P., Sheehan, K. M., Sheahan, K., O’Donoghue, D. P., Fitzgerald, D. J., Murray, F. E., Heaney, A., Collins, J. S. A., Bamford, K. B., Watson, R. G. P., McFarland, R. J., Tham, T. C. K., McNamara, D., Franelli, S., Whelan, H., Hamilton, H., Beattie, S., O’Morain, C., Ryan, B. M., Keeling, P. W. N., Brennan, E. G., O’Hare, N., McDermott, R., Byrne, P. J., McDougall, N. I., Collins, J. S. A., Gieeson, C. M., Russell, S. E. H., Sloan, J. M., Morrisey, D., Murphy, L., Kiely, B., Fitzgerald, G., Daly, C., O’Sullivan, G., Shanahan, F., Collins, J. K., Marteau, P., Johnston, S. D., Watson, R. G. P., Coates, C., Feighery, C., O’Keeffe, J., Whelan, A., Lynch, S., Weir, D. G., Abuzakouk, M., Feighery, C., Barnes, L., O’Gorman, N., McKenna, M., Freaney, R., Young, M., Gaines, S., Brady, D., Drudy, D., O’Farrelly, C., Gilleece, A., Fenelon, L., McPartlin, J., Goh, J., MacMathuna, P., Baird, A., Godson, C., Brady, H. R., Petasis, N. A., Fokin, V. V., Hopkins, A. M., Myers, A., Moynagh, P., Baird, A. W., O’Donoghue, D. P., Kirby, J. M., Tham, T. C. K., Allen, M. J., Best, B., Calvert, H., Kirk, S., McKelvey, S. T. D., Moorehead, R. J., Varghese, J. C., Sookhai, S., Murray, F. E., Walsh, T., Osborne, H., Broe, P., Lee, M. J., Moriarty, D., Baird, A. W., Watson, R. W. G., Brannigan, A. E., Coffey, R., Murphy, E., Fitzpatrick, J. M., Shah, A. A., Murray, F. E., Murray, E., Thjodleifsson, B., Bjarnason, I., Fitzgerald, D. J., Sheehan, K. M., Murray, E., Shah, A. A., Murray, F. E., Thjodleifsson, B., Bjarnason, I., Fitzgerald, D. J., Montague, S., McNamara, D., Forkin, C., O’Morain, C., O’Toole, G. C., Grant, D. C., Barry, M. K., Sheahan, K., O’Donoghue, D. P., Hyland, J. M. P., Gallagher, C. M., Grant, D. C., Connell, P., Barry, M. K., Traynor, O., Hyland, J. M. P., Barry, M. K., Grant, D. C., Sheahan, K., O’Donoghue, D. P., Hyland, J. M. P., Ling, T. C., Johnston, B., Byrne, M. F., Farrell, M. A., Varghese, J. C., Lee, M. J., Murray, F. E., Goulding, C. A., Albloushi, S. S., O’Connell, P., Murray, F. E., Graham, L. E., Robinson, T. J., Graham, L. E., Robinson, T. J., Jabeen, T., Cannon, B., Jenkins, D., Whelton, M. J., Bohra, S., Cannon, B., Whelton, M. J., Keohane, C., Duggan, M., Bohra, S., Cannon, B., Whelton, M. J., Siddheshwar, R. K., Wilson, R. G., Hainsworth, P. J., Campbell, F. C., Kelly, S. B., Kirby, J. M., Tham, T. C. K., Best, B., Calvert, H., Moorehead, R. J., Kirk, S., Heaney, A., Collins, J. S. A., Watson, R. G. P., Heaney, A., Collins, J. S. A., Watson, R. G. P., Bamford, K. B., McFarland, R. J., Tham, T. C. K., Egan, B. M., Grant, D. C., Barry, M. K., Traynor, O., Hyland, J. M. P., Simutowe, C., McNamara, D. A., Collins, N., Walsh, T. N., Mukherjee, A., Scott, M., Pohl, C., Duggan, E., Wasi, M., Sarkar, A., Donnell, L. O., Eustace, P. W., Johnston, J. G., Waldron, R., Barrett, S., Ryan, E., MacMathuna, P., Crowe, J., Callagy, G., Keane, J. C. O., Coughlan, B., Crowe, J., Sheehan, J., Hickey, A., Carr, A., Kell, M. R., Lynch, M., Ryan, D., Winter, D. C., Rajpal, P., Kirwan, W. O., Redmond, H. P., Larkin, C. J., Sloan, J. M., Watson, R. G. P., Ardill, J. E. S., Collins, J. S. A., Buchanan, K. D., Lim, P. L., Gibbons, M., Crawford, E. J., Johnston, B. T., Mitchell, R. M. S., Watson, R. G. P., Gardiner, K. R., Collins, J. S. A., McCallion, K., Mitchell, R. M. S., Collins, J. S. A., Watson, R. G. P., McCallion, K., Gardiner, K. R., McCallion, K., Gardiner, K. R., Mitchell, R. M. S., Watson, R. G. P., Collins, J. S. A., Rodgers, C., Johnston, S., Watson, R. G. P., Crone, B. M., Love, A. H. G., Feighery, L., Feighery, C., Jackson, J., Abuzakouk, M., Lynch, S., Weir, D. G., Yassin, M. M. I., Harkin, D. W., Barros D’sa, A. A. B., Parks, T. G., Curry, M. P., Hegarty, J. E., Golden-Mason, L., O’Farrelly, C., Hannigan, E., and Parfrey, N.

Published
1998
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29. The Book of Job in Middle English literature (1100-1500)

Author

Allen, M. J.

Subjects
820.9002
Abstract

This dissertation examines references to the Book of Job by Middle Englisb authors, shows the ways 1n which they amploy the ,tory or quotations from it, and attempts to account for the consistency with which they depart from their source. Middle English authors abridge the Book of Job considerably, unifying it and smoothing away much of its complexity. While they give evidence o! uneasiness with their source they exercise considerable ingenuity in adapting it to their purposes. They retain some of the original but frequently depart from the facts and even from the spirit and general tenor of the book. They alter events, misquote the text or quote it in a manner or context wbich alters its significance. and augment it with material which does not occur in it. They select only a f~1 of Job's words for quotation and often attribute to him speeches uttered in the original by his friends who are h1s opponents in the discussion. The principal reason for these variations Is the Book of Job itself, part of Icripture, yet containing palsage. repugnant to orthodox religious sensibilities. The Church Fathers. legend and liturgy are the main source. of the variations in the literature. Exegetes give allegorical interpretations which replace unaatis!actory literal meanings or associate particular features of dogma with certain passages. Legends supply the notion of the patience of Job and give additional evidence of hi' saintlines$. Because some portions of the book are used 1n a liturgical effice, adjacent antiphons come to be regarded as from Job. ~vin9 to its nature and to the influences brought to bear on it before it was used in Itlddle English. there 1s a considerable difference between the Book of Job as it appears 1n the Blble and as it 1$ reproduced 1n ~~ddle English literature.

Published
1970

32. Compounds of Groups 7-3 (Mn..., Cr..., V..., Ti..., Sc..., La..., Ac...)

Author

Imamoto, T., additional, Oshima, K., additional, Gridnev, I. D., additional, Kühn, F. E., additional, Romäo, C. C., additional, Herrmann, W. A., additional, Kündig, E. P., additional, Pache, S. H., additional, Uemura, M., additional, Theopold, K. H., additional, Mommertz, A., additional, Salisbury, B. A., additional, Poli, R., additional, Smith, K. M., additional, Ito, T., additional, Minato, M., additional, Mashima, K., additional, Nakamura, A., additional, Mikami, K., additional, Matsumoto, Y., additional, Shiono, T., additional, Takeda, T., additional, Tsubouchi, A., additional, Bertus, P., additional, Boeda, F., additional, Pearson-Long, M. S. M., additional, Negishi, E.-i., additional, Takahashi, T., additional, Hou, Z., additional, Wakatsuki, Y., additional, Dissanayake, P., additional, Averill, D. J., additional, Allen, M. J., additional, Dormond, A., additional, Barbier-Baudry, D., additional, Beweries, T., additional, and Rosenthal, U., additional

Published
2003
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35. Sixteenth sir peter freyer memorial lecture and surgical symposium September 13th & 14th, 1991 Session I

Author

Coulter, J., Molloy, R. G., Moran, K. T., Waldron, R., Kirwan, W. O., O’Suilleabhain, C., Horgan, A., Mealy, K., Burke, P., Hyland, J., Horgan, A. F., Sheehan, M., Browne, R. M., Austin, O., Clery, A. P., Deasy, J. M., Sulaiman-Shoaib S., Soeda, J., O’Briain, D. S., Puri, P., Coveney, E. C., McAllister, V., McDermott, E. W. M., O’Higgins, N. J., Maher, M., Caldwell, M. T. P., Murchan, P., Beesley, W., Feeley, T. M., Tanner, W. A., Keane, F. B. V., Abbasakoor, F., Attwood, S. E. A., McGrath, L P., Stephens, R. B., O’Broin, E., Davies, M. G., McGinley, J., Mannion, C., Gupta, S., Shine, M. F., Lennon, F., Ninan, G., Fitzgerald, R. J., Guiney, E. J., O’Donnell, B., O’Donnell, A. F., Luke, D., Wood, A. E., Murphy, P. G., Walsh, T. N., Hill, A. D. K., Li, H., Hennessy, T. P. J., Noonan, N., Breslin, B., Keeling, P. W. N., Curran, A. J., Gough, D. B., Davidson, I. R., Keeling, P., O’Leary, D. P., Smythe, A., Bird, N. C., Johnson, A. G., Nicholson, P., Traynor, O., Dawson, K., Aitken, J., Cooke, B. A., Parbhoo, S. P., N.Williams, N., Daly, J. M., Herlyn, M., Bouchier-Hayes, D., Stuart, R. C., Allen, M. J., Thompson, W. D., Peel, A. L. G., Hehir, D. T., Cronin, K., McCann, A., Dervan, P. A., Heffernan, S. J., Hederman, W. P., Galea, M. H., Dilks, B., Gilmour, A., Ellis, L. O., Elston, C. W., Blarney, R. W., O’Rourke, S., Mookens, A., Carter, R., Parkin, D., Couse, N. F., Delaney, C. P., Horgan, P. G., Fitzpatrick, J. M., Gorey, T. F., O’Byrne, J. M., McCabe, J. P., Stephens, M., McManus, F., L.Mangan, J., Barr, D. A., Mulvenna, G. J., Maginn, P., Kernohan, W. G., Mollan, R. A. B., O’Flanagan, S. J., Stack, J. P., Dervan, P., Hurson, B., Tierney, S., Fitzgerald, P., O’Sullivan, T., Grace, P., Wyatt, J. P., Evans, R. J., Cusack, S. P., McGowan, S., McGovem, E., Schwaitzberg, S. D., Connolly, R. J., Sullivan, R. P., Mortimer, G., Geraghty, J. G., O’Dwyer, P. J., McGlone, B. S., O’Brien, D. P., Younis, H. A., Given, H. F., Phelan, C., Byrne, J., Barry, K., Gough, D., Hanrahan, L., Given, F., Sweeney, J. P., Korebrits, A. M., Reynolds, J. V, Gorey, T. F, O’Hanlon, D. M., Stokes, M. A., Redmond, H. P., McCarthy, J., Daly, J. M., Losty, P., Murphy, M., Butler, P. E. M., Grace, P. G., Novell, J. R., Hobbs, S. K., Smith, O., Hazlehurst, G., Brozovic, B., Rolles, K., Burroughs, A., Mallett, S., Mehta, A., Buckley, D., Waldron, D., O’Brien, D., Curran, C., Given, F., Grey, L., Leahy, A., Darzi, A., Leader, D., Broe, P., Geoghegan, J. G., Cheng, C. A., Lawson, D. C., Pappas, T. N., O’Sullivan, D., Lieber, M. M., Colby, T. V, Barrett, D. M., Rogers, E., Greally, J., Bredin, H. C., Corcoran, M. O., Kenny, M., Horgan, P., Headon, D., Grace, A., Grace, P. A., Bouchier-Hayes, D., Cross, S., Hehir, D., O’Briain, S., Hartigan, P., Colgan, M. P., Moore, D., Shanik, G., Zaidi, S. Z., Hehir, D. J., Cross, K. S., Colgan, M. P., Moore, D. J., Shanik, D. G., Lacy, P., Cross, S., Hehir, D., Moore, D., Shanik, G., Coleman, J. E., McEnroe, C. S., Gelfand, J. A., O’Donnell, T. F., Callow, A. D., Buckley, D. J., O’Riordain, D. S., O’Donnell, J. A., Meagher, P., Boos, K., Gillen, P., Corrigan, T., Vashisht, R., Sian, M., Sharp, E. J, O’Malley, M. K., Kerin, M. J., Wilkinson, D., Parkin, A., Kester, R. C., Maher, M. M., Waldron, R. P., Waldron, D. J., Brady, M. P., Allen, M., Lyncy, T. H, Waymont, B., Emtage, L., Blackledge, G. R., Hughes, M. A., Wallace, D. M. A., O’Sullivan, D., Mynderse, L., Barrett, D. M., Rogers, E., Grimes, H., Chambers, F., Lowe, D., Bredin, H. C., Corcoran, M. O., Waldron, D. J., Prasad, B., O’Sullivan, D. C., Gillen, M. Barry P., McNicholas, M., Traynor, O., Bredin, H., O’Dowd, T. H., Corcoran, M., O’Donoghue, J. M., Corcoran, M., McGuire, M., McNamara, A., Creagh, T., Grainger, R., McDermott, T. B. D., Butler, M. R., Gleeson, M., Creagh, T., Grainger, R., McDermott, T. E. D., Hurley, J. P., Hone, R., Neligan, M., Hurley, J., White, M., McDonagh, P., Phelan, D., McGovern, E., Quinn, F., Breatnach, F., O’Meara, A., McGrath, J. P., McCann, S. R., Gaffney, E. F., Hennessy, A, Leader, M., Taleb, F. S., McKiernan, M. V., Leyden, P. J., McCann, J. J., Coleman, J., Quereshi, A., Ajayi, N., McEntee, G., Osborne, H., Bouchier-Hayes, D. J., Johnston, S., O’Malley, K., Smyth, E., Bouchier-Hayes, D. L, Darzi, A., Quereshi, A., McEntee, G., O’Connell, P. R., Gorey, T., McAnena, O. J., Reed, M. W., Duncan, J. L., Reilly, C. S., McGibney, C., Lawlor, P., Lawless, B., McGuinness, E., and Leahy, S.

Published
1992
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