Search

The goal of protein fitness optimization is to discover new protein variants with enhanced fitness for a given use. The vast search space and the sparsely populated fitness landscape, along with the discrete nature of protein sequences, pose significant challenges when trying to determine the gradient towards configurations with higher fitness. We introduce Variational Latent Generative Protein Optimization (VLGPO), a variational perspective on fitness optimization. Our method embeds protein sequences in a continuous latent space to enable efficient sampling from the fitness distribution and combines a (learned) flow matching prior over sequence mutations with a fitness predictor to guide optimization towards sequences with high fitness. VLGPO achieves state-of-the-art results on two different protein benchmarks of varying complexity. Moreover, the variational design with explicit prior and likelihood functions offers a flexible plug-and-play framework that can be easily customized to suit various protein design tasks.

The weak gravitational lensing magnification of Type Ia supernovae (SNe Ia) is sensitive to the matter power spectrum on scales $k>1 h$ Mpc$^{-1}$, making it unwise to interpret SNe Ia lensing in terms of power on linear scales. We compute the probability density function of SNe Ia magnification as a function of standard cosmological parameters, plus an empirical parameter $A_{\rm mod}$ which describes the suppression or enhancement of matter power on non-linear scales compared to a cold dark matter only model. While baryons are expected to enhance power on the scales relevant to SN Ia lensing, other physics such as neutrino masses or non-standard dark matter may suppress power. Using the Dark Energy Survey Year-5 sample, we find $A_{\rm mod} = 0.77^{+0.69}_{-0.40}$ (68\% credible interval around the median). Although the median is consistent with unity there are hints of power suppression, with $A_{\rm mod} < 1.09$ at 68\% credibility., Comment: 12 pages, submitted to MNRAS. arXiv admin note: text overlap with arXiv:2410.07956

We conduct a search for strong gravitational lenses in the Dark Energy Survey (DES) Year 6 imaging data. We implement a pre-trained Vision Transformer (ViT) for our machine learning (ML) architecture and adopt Interactive Machine Learning to construct a training sample with multiple classes to address common types of false positives. Our ML model reduces 236 million DES cutout images to 22,564 targets of interest, including around 85% of previously reported galaxy-galaxy lens candidates discovered in DES. These targets were visually inspected by citizen scientists, who ruled out approximately 90% as false positives. Of the remaining 2,618 candidates, 149 were expert-classified as 'definite' lenses and 516 as 'probable' lenses, with 147 of these candidates being newly identified. Additionally, we trained a second ViT to find double-source plane lens systems, finding at least one double-source system. Our main ViT excels at identifying galaxy-galaxy lenses, consistently assigning high scores to candidates with high confidence. The top 800 ViT-scored images include around 100 of our `definite' lens candidates. This selection is an order of magnitude higher in purity than previous convolutional neural network-based lens searches and demonstrates the feasibility of applying our methodology for discovering large samples of lenses in future surveys.

Skyrmions, merons, bimerons, and skyrmionic hopfions are quasiparticles which have stable topological textures. They have been observed across multiple physical domains including nucleons, water waves, magnetic materials, electromagnetic fields, condensed-matter physics, liquid crystals, and Bose-Einstein condensates. The nontrivial topological texture of these quasiparticles exhibited promising applications across several research fields including cosmology, particle physics, superfluids, high-energy physics, optics, condensed matter, early-universe cosmology, cold quantum matter, and liquid crystals. These quasiparticles have most recently been observed in paraxial vector beams. Due to the inhomogeneous polarization distribution of vector beams, the quasiparticle textures reside in the Stokes vector fields. Here, we review recent developments in paraxial quasiparticle research and provide detailed information on their fundamental properties and future prospects. We discuss various techniques which have been used to experimentally generate these quasiparticles and we examine a number of their proposed applications. Notably, this review offers insight into the concepts and techniques which can be applied to the generation of optical skyrmions in paraxial laser beams, and investigates their intriguing applications across both fundamental and applied optics., Comment: 43 pages, 29 figures, topical review

Recent cosmological analyses measuring distances of Type Ia Supernovae (SNe Ia) and Baryon Acoustic Oscillations (BAO) have all given similar hints at time-evolving dark energy. To examine whether underestimated SN Ia systematics might be driving these results, Efstathiou (2024) compared overlapping SN events between Pantheon+ and DES-SN5YR (20% SNe are in common), and reported evidence for a $\sim$0.04 mag offset between the low and high-redshift distance measurements of this subsample of events. If these offsets are arbitrarily subtracted from the entire DES-SN5YR sample, the preference for evolving dark energy is reduced. In this paper, we reproduce this offset and show that it has two sources. First, 43% of the offset is due to DES-SN5YR improvements in the modelling of supernova intrinsic scatter and host galaxy properties. These are scientifically-motivated modelling updates implemented in DES-SN5YR and their associated uncertainties are captured within the DES-SN5YR systematic error budget. Even if the less accurate scatter model and host properties from Pantheon+ are used instead, the DES-SN5YR evidence for evolving dark energy is only reduced from 3.9$\sigma$ to 3.3$\sigma$. Second, 38% of the offset is due to a misleading comparison because different selection functions characterize the DES subsets included in Pantheon+ and DES-SN5YR and therefore individual SN distance measurements are expected to be different because of different bias corrections. In conclusion, we confirm the validity of the published DES-SN5YR results., Comment: 9 pages, 5 figures

We describe the photometric data set assembled from the full six years of observations by the Dark Energy Survey (DES) in support of static-sky cosmology analyses. DES Y6 Gold is a curated data set derived from DES Data Release 2 (DR2) that incorporates improved measurement, photometric calibration, object classification and value added information. Y6 Gold comprises nearly $5000~{\rm deg}^2$ of $grizY$ imaging in the south Galactic cap and includes 669 million objects with a depth of $i_{AB} \sim 23.4$ mag at S/N $\sim 10$ for extended objects and a top-of-the-atmosphere photometric uniformity $< 2~{\rm mmag}$. Y6 Gold augments DES DR2 with simultaneous fits to multi-epoch photometry for more robust galaxy shapes, colors, and photometric redshift estimates. Y6 Gold features improved morphological star-galaxy classification with efficiency $98.6\%$ and contamination $0.8\%$ for galaxies with $17.5 < i_{AB} < 22.5$. Additionally, it includes per-object quality information, and accompanying maps of the footprint coverage, masked regions, imaging depth, survey conditions, and astrophysical foregrounds that are used for cosmology analyses. After quality selections, benchmark samples contain 448 million galaxies and 120 million stars. This paper will be complemented by online data access and documentation., Comment: Data products and documentation are publicly available at https://des.ncsa.illinois.edu/releases

Synthetic source injection (SSI), the insertion of sources into pixel-level on-sky images, is a powerful method for characterizing object detection and measurement in wide-field, astronomical imaging surveys. Within the Dark Energy Survey (DES), SSI plays a critical role in characterizing all necessary algorithms used in converting images to catalogs, and in deriving quantities needed for the cosmology analysis, such as object detection rates, galaxy redshift estimation, galaxy magnification, star-galaxy classification, and photometric performance. We present here a source injection catalog of $146$ million injections spanning the entire 5000 deg$^2$ DES footprint, generated using the Balrog SSI pipeline. Through this sample, we demonstrate that the DES Year 6 (Y6) image processing pipeline provides accurate estimates of the object properties, for both galaxies and stars, at the percent-level, and we highlight specific regimes where the accuracy is reduced. We then show the consistency between SSI and data catalogs, for all galaxy samples developed within the weak lensing and galaxy clustering analyses of DES Y6. The consistency between the two catalogs also extends to their correlations with survey observing properties (seeing, airmass, depth, extinction, etc.). Finally, we highlight a number of applications of this catalog to the DES Y6 cosmology analysis. This dataset is the largest SSI catalog produced at this fidelity and will serve as a key testing ground for exploring the utility of SSI catalogs in upcoming surveys such as the Vera C. Rubin Observatory Legacy Survey of Space and Time.

We propose TAMER, a Test-time Adaptive MoE-driven framework for EHR Representation learning. TAMER combines a Mixture-of-Experts (MoE) with Test-Time Adaptation (TTA) to address two critical challenges in EHR modeling: patient population heterogeneity and distribution shifts. The MoE component handles diverse patient subgroups, while TTA enables real-time adaptation to evolving health status distributions when new patient samples are introduced. Extensive experiments across four real-world EHR datasets demonstrate that TAMER consistently improves predictive performance for both mortality and readmission risk tasks when combined with diverse EHR modeling backbones. TAMER offers a promising approach for dynamic and personalized EHR-based predictions in practical clinical settings. Code is publicly available at https://github.com/yhzhu99/TAMER., Comment: 8 pages, 3 figures, 7 tables

For the 696 trans-Neptunian objects (TNOs) with absolute magnitudes $5.5 < H_r < 8.2$ detected in the Dark Energy Survey (DES), we characterize the relationships between their dynamical state and physical properties -- namely $H_r$, indicating size; colors, indicating surface composition; and flux variation semi-amplitude $A$, indicating asphericity and surface inhomogeneity. We seek ``birth'' physical distributions that can recreate these parameters in every dynamical class. We show that the observed colors of these TNOs are consistent with 2 Gaussian distributions in $griz$ space, ``near-IR bright'' (NIRB) and ``near-IR faint'' (NIRF), presumably an inner and outer birth population, respectively. We find a model in which both the NIRB and NIRF $H_r$ and $A$ distributions are independent of current dynamical states, supporting their assignment as birth populations. All objects are consistent with a common rolling $p(H_r)$, but NIRF objects are significantly more variable. Cold classicals (CCs) are purely NIRF, while hot classical (HC), scattered, and detached TNOs are consistent with $\approx70\%$ NIRB, and resonances' NIRB fractions show significant variation. The NIRB component of the HCs and of some resonances have broader inclination distributions than the NIRFs, i.e. their current dynamics retains information about birth location. We find evidence for radial stratification within the birth NIRB population, in that HC NIRBs are on average redder than detached or scattered NIRBs; a similar effect distinguishes CCs from other NIRFs. We estimate total object counts and masses of each class within our $H_r$ range. These results will strongly constrain models of the outer solar system., Comment: 52 pages, 13 figures, 4 appendices. Abstract abridged. Associated repository: https://github.com/bernardinelli/des_tno_likelihood

Cosmic shear, galaxy clustering, and the abundance of massive halos each probe the large-scale structure of the universe in complementary ways. We present cosmological constraints from the joint analysis of the three probes, building on the latest analyses of the lensing-informed abundance of clusters identified by the South Pole Telescope (SPT) and of the auto- and cross-correlation of galaxy position and weak lensing measurements (3$\times$2pt) in the Dark Energy Survey (DES). We consider the cosmological correlation between the different tracers and we account for the systematic uncertainties that are shared between the large-scale lensing correlation functions and the small-scale lensing-based cluster mass calibration. Marginalized over the remaining $\Lambda$CDM parameters (including the sum of neutrino masses) and 52 astrophysical modeling parameters, we measure $\Omega_\mathrm{m}=0.300\pm0.017$ and $\sigma_8=0.797\pm0.026$. Compared to constraints from Planck primary CMB anisotropies, our constraints are only 15% wider with a probability to exceed of 0.22 ($1.2\sigma$) for the two-parameter difference. We further obtain $S_8\equiv\sigma_8(\Omega_\mathrm{m}/0.3)^{0.5}=0.796\pm0.013$ which is lower than the Planck measurement at the $1.6\sigma$ level. The combined SPT cluster, DES 3$\times$2pt, and Planck datasets mildly prefer a non-zero positive neutrino mass, with a 95% upper limit $\sum m_\nu<0.25~\mathrm{eV}$ on the sum of neutrino masses. Assuming a $w$CDM model, we constrain the dark energy equation of state parameter $w=-1.15^{+0.23}_{-0.17}$ and when combining with Planck primary CMB anisotropies, we recover $w=-1.20^{+0.15}_{-0.09}$, a $1.7\sigma$ difference with a cosmological constant. The precision of our results highlights the benefits of multiwavelength multiprobe cosmology., Comment: Submitted to Phys. Rev. D

Modeling the intrinsic alignment (IA) of galaxies poses a challenge to weak lensing analyses. The Dark Energy Survey is expected to be less impacted by IA when limited to blue, star-forming galaxies. The cosmological parameter constraints from this blue cosmic shear sample are stable to IA model choice, unlike passive galaxies in the full DES Y3 sample, the goodness-of-fit is improved and the $\Omega_{m}$ and $S_8$ better agree with the cosmic microwave background. Mitigating IA with sample selection, instead of flexible model choices, can reduce uncertainty in $S_8$ by a factor of 1.5., Comment: Data access available at https://jamiemccullough.github.io/data/blueshear/

The evolution of the quantum state of a system upon measurement results in state update. In this work, we investigate the characterization of updated states of multi-partite entangled qubit states with non-destructive weak measurements, involving weakly coupling a pointer to each qubit in a relativistic context. As is well-known, the updated state at intermediate times is frame-dependent, and outcome randomness intrinsic to projective measurements prevents any information to be acquired on the updated state. Here we will see that when weak measurements are implemented there is instead an interplay between randomness and interference, depending on the number of qubits, so as to maintain consistency between descriptions in arbitrary reference frames. Analytical results are given for a small or infinite number of qubits, while for a finite number of qubits we will resort to Monte-Carlo sampling in order to simulate numerically the results of weak measurements. As a by-product, we show how a single-shot measurement of the pointers positions allows to make quantitative predictions on the outcomes that can be obtained for any observable measured on a distant qubit of the multi-partite state.

The number density and redshift evolution of optically selected galaxy clusters offer an independent measurement of the amplitude of matter fluctuations, $S_8$. However, recent results have shown that clusters chosen by the redMaPPer algorithm show richness-dependent biases that affect the weak lensing signals and number densities of clusters, increasing uncertainty in the cluster mass calibration and reducing their constraining power. In this work, we evaluate an alternative cluster proxy, outskirt stellar mass, $M_{\textrm{out}}$, defined as the total stellar mass within a $[50,100]$ kpc envelope centered on a massive galaxy. This proxy exhibits scatter comparable to redMaPPer richness, $\lambda$, but is less likely to be subject to projection effects. We compare the Dark Energy Survey Year 3 redMaPPer cluster catalog with a $M_{\textrm{out}}$ selected cluster sample from the Hyper-Suprime Camera survey. We use weak lensing measurements to quantify and compare the scatter of $M_{\textrm{out}}$ and $\lambda$ with halo mass. Our results show $M_{\textrm{out}}$ has a scatter consistent with $\lambda$, with a similar halo mass dependence, and that both proxies contain unique information about the underlying halo mass. We find $\lambda$-selected samples introduce features into the measured $\Delta \Sigma$ signal that are not well fit by a log-normal scatter only model, absent in $M_{\textrm{out}}$ selected samples. Our findings suggest that $M_{\textrm{out}}$ offers an alternative for cluster selection with more easily calibrated selection biases, at least at the generally lower richnesses probed here. Combining both proxies may yield a mass proxy with a lower scatter and more tractable selection biases, enabling the use of lower mass clusters in cosmology. Finally, we find the scatter and slope in the $\lambda-M_{\textrm{out}}$ scaling relation to be $0.49 \pm 0.02$ and $0.38 \pm 0.09$., Comment: 22 pages, 8 figures, 4 tables, submitted to PRD

Gravitational lensing magnification of Type Ia supernovae (SNe Ia) allows information to be obtained about the distribution of matter on small scales. In this paper, we derive limits on the fraction $\alpha$ of the total matter density in compact objects (which comprise stars, stellar remnants, small stellar groupings and primordial black holes) of mass $M > 0.03 M_{\odot}$ over cosmological distances. Using 1,532 SNe Ia from the Dark Energy Survey Year 5 sample (DES-SN5YR) combined with a Bayesian prior for the absolute magnitude $M$, we obtain $\alpha < 0.12$ at the 95\% confidence level after marginalisation over cosmological parameters, lensing due to large-scale structure, and intrinsic non-Gaussianity. Similar results are obtained using priors from the cosmic microwave background, baryon acoustic oscillations and galaxy weak lensing, indicating our results do not depend on the background cosmology. We argue our constraints are likely to be conservative (in the sense of the values we quote being higher than the truth), but discuss scenarios in which they could be weakened by systematics of the order of $\Delta \alpha \sim 0.04$, Comment: Accepted by MNRAS

Predicting the end-of-life (EOL) of lithium-ion batteries across different manufacturers presents significant challenges due to variations in electrode materials, manufacturing processes, cell formats, and a lack of generally available data. Methods that construct features solely on voltage-capacity profile data typically fail to generalize across cell chemistries. This study introduces a methodology that combines traditional voltage-capacity features with Direct Current Internal Resistance (DCIR) measurements, enabling more accurate and generalizable EOL predictions. The use of early-cycle DCIR data captures critical degradation mechanisms related to internal resistance growth, enhancing model robustness. Models are shown to successfully predict the number of cycles to EOL for unseen manufacturers of varied electrode composition with a mean absolute error (MAE) of 150 cycles. This cross-manufacturer generalizability reduces the need for extensive new data collection and retraining, enabling manufacturers to optimize new battery designs using existing datasets. Additionally, a novel DCIR-compatible dataset is released as part of ongoing efforts to enrich the growing ecosystem of cycling data and accelerate battery materials development., Comment: 17 pages, 7 figures

Accurate estimation of battery state of health is crucial for effective electric vehicle battery management. Here, we propose five health indicators that can be extracted online from real-world electric vehicle operation and develop a machine learning-based method to estimate the battery state of health. The proposed indicators provide physical insights into the energy and power fade of the battery and enable accurate capacity estimation even with partially missing data. Moreover, they can be computed for portions of the charging profile and real-world driving discharging conditions, facilitating real-time battery degradation estimation. The indicators are computed using experimental data from five cells aged under electric vehicle conditions, and a linear regression model is used to estimate the state of health. The results show that models trained with power autocorrelation and energy-based features achieve capacity estimation with maximum absolute percentage error within 1.5% to 2.5% .

Statistics that capture the directional dependence of the baryon distribution in the cosmic web enable unique tests of cosmology and astrophysical feedback. We use constrained oriented stacking of thermal Sunyaev-Zel'dovich (tSZ) maps to measure the anisotropic distribution of hot gas $2.5-40$ Mpc away from galaxy clusters embedded in massive filaments and superclusters. The cluster selection and orientation (at a scale of $\sim15$ Mpc) use Dark Energy Survey (DES) Year 3 data, while expanded tSZ maps from the Atacama Cosmology Telescope Data Release 6 enable a $\sim3\times$ more significant measurement of the extended gas compared to the technique's proof-of-concept. Decomposing stacks into cosine multipoles of order $m$, we detect a dipole ($m=1$) and quadrupole ($m=2$) at $8-10\sigma$, as well as evidence for $m=4$ signal at up to $6\sigma$, indicating sensitivity to late-time non-Gaussianity. We compare to the Cardinal simulations with spherical gas models pasted onto dark matter halos. The fiducial tSZ data can discriminate between two models that deplete pressure differently in low-mass halos (mimicking astrophysical feedback), preferring higher average pressure in extended structures. However, uncertainty in the amount of cosmic infrared background contamination reduces the constraining power. Additionally, we apply the technique to DES galaxy density and weak lensing to study for the first time their oriented relationships with tSZ. In the tSZ-to-lensing relation, averaged on 7.5 Mpc (transverse) scales, we observe dependence on redshift but not shape or radial distance. Thus, on large scales, the superclustering of gas pressure, galaxies, and total matter is coherent in shape and extent., Comment: 45 pages, 18 figures, submitted to ApJ

Using a sample of 2800 galaxy clusters identified in the Dark Energy Survey across the redshift range $0.20 < z < 0.60$, we characterize the hierarchical assembly of Bright Central Galaxies (BCGs) and the surrounding intracluster light (ICL). To quantify hierarchical formation we use the stellar mass - halo mass (SMHM) relation for the BCG+ICL system and incorporate the magnitude gap (M14), the difference in brightness between the BCG (measured within 30kpc) and 4th brightest cluster member galaxy within 0.5 $R_{200,c}$. The inclusion of M14, which traces BCG hierarchical growth, increases the slope and decreases the intrinsic scatter in the SMHM relation, highlighting that it is a latent variable within the BCG+ICL SMHM relation. Moreover, the correlation with M14 decreases at large radii from the BCG's centre. However, the stellar light within the BCG+ICL transition region (30kpc - 80kpc) most strongly correlates with the dark matter halo mass and has a statistically significant correlation with M14. As the light in the transition region and M14 are independent measurements, the transition region may grow as a result of the BCG's hierarchical two-phase formation. Additionally, as M14 and ICL result from hierarchical growth, we use a stacked sample and find that clusters with large M14 values are characterized by larger ICL and BCG+ICL fractions, which illustrates that the merger processes that build the BCG stellar mass also grow the ICL. Furthermore, this may suggest that M14 combined with the ICL fraction can be used as a method to identify dynamically relaxed clusters., Comment: 16 pages, 5 Figures, submitted to MNRAS on 8/30/2024

Using 1533 type Ia supernovae (SNe Ia) from the five-year sample of the Dark Energy Survey (DES), we investigate the effects of projected galactocentric separation between the SNe and their host galaxies on their light curves and standardization. We show, for the first time, that the difference in SN Ia post-standardization brightnesses between high and low-mass hosts reduces from $0.078\pm0.011$ mag in the full sample to $0.036 \pm 0.018$ mag for SNe Ia located in the outer regions of their host galaxies, while increasing to $0.100 \pm 0.014$ mag for SNe in the inner regions. In these inner regions, the step can be reduced (but not removed) using a model where the $R_V$ of dust along the line-of-sight to the SN changes as a function of galaxy properties. To explain the remaining difference, we use the distributions of the SN Ia stretch parameter to test whether the inferred age of SN progenitors are more varied in the inner regions of galaxies. We find that the proportion of high-stretch SNe Ia in red (older) environments is more prominent in outer regions and that the outer regions stretch distributions are overall more homogeneous compared to inner regions, but conclude that this effect cannot explain the reduction in significance of any Hubble residual step in outer regions. We conclude that the standardized distances of SNe Ia located in the outer regions of galaxies are less affected by their global host galaxy properties than those in the inner regions., Comment: 17 pages, 13 figures

The present state of cosmology is facing a crisis where there is a fundamental disagreement in measurements of the Hubble constant ($H_{0}$), with significant tension between the early and late universe methods. Type Ia supernovae (SNe Ia) are important to measuring $H_{0}$ through the astronomical distance ladder. However, there remains potential to better standardise SN Ia light curves by using known dependencies on host galaxy properties after the standard light curve width and colour corrections have been applied to the peak SN Ia luminosities. To explore this, we use the 5-year photometrically identified SNe Ia sample obtained by the Dark Energy Survey, along with host galaxy spectra obtained by the Australian Dark Energy Survey. Using host galaxy spectroscopy, we find a significant trend with the equivalent width (EW) of the [OII] $\lambda\lambda$ 3727, 29 doublet, a proxy for specific star formation rate, and Hubble residuals. We find that the correlation with [OII] EW is a powerful alternative to the commonly used mass step after initial light curve corrections. We applied our [OII] EW correction to a sample of 20 SN Ia hosted by calibrator galaxies observed using WiFeS, and examined the impact on both the SN Ia absolute magnitude and $H_{0}$. We then explored different [OII] EW corrections and found $H_{0}$ values ranging between $72.80$ to $73.28~\mathrm{km} \mathrm{s}^{-1} \mathrm{Mpc}^{-1}$. Notably, even after using an additional [OII] EW correction, the impact of host galaxy properties in standardising SNe Ia appears limited in reducing the current tension ($\sim$5$\sigma$) with the Cosmic Microwave Background result for $H_{0}$., Comment: 16 pages, 13 figures. Submitting to MNRAS

Cosmological analyses with Type Ia Supernovae (SNe Ia) have traditionally been reliant on spectroscopy for both classifying the type of supernova and obtaining reliable redshifts to measure the distance-redshift relation. While obtaining a host-galaxy spectroscopic redshift for most SNe is feasible for small-area transient surveys, it will be too resource intensive for upcoming large-area surveys such as the Vera Rubin Observatory Legacy Survey of Space and Time, which will observe on the order of millions of SNe. Here we use data from the Dark Energy Survey (DES) to address this problem with photometric redshifts (photo-z) inferred directly from the SN light-curve in combination with Gaussian and full p(z) priors from host-galaxy photo-z estimates. Using the DES 5-year photometrically-classified SN sample, we consider several photo-z algorithms as host-galaxy photo-z priors, including the Self-Organizing Map redshifts (SOMPZ), Bayesian Photometric Redshifts (BPZ), and Directional-Neighbourhood Fitting (DNF) redshift estimates employed in the DES 3x2 point analyses. With detailed catalog-level simulations of the DES 5-year sample, we find that the simulated w can be recovered within $\pm$0.02 when using SN+SOMPZ or DNF prior photo-z, smaller than the average statistical uncertainty for these samples of 0.03. With data, we obtain biases in w consistent with simulations within ~1$\sigma$ for three of the five photo-z variants. We further evaluate how photo-z systematics interplay with photometric classification and find classification introduces a subdominant systematic component. This work lays the foundation for next-generation fully photometric SNe Ia cosmological analyses., Comment: 19 pages, 9 figures. Submitting to MNRAS, comments welcome

This paper proposes a framework for time series generation built to investigate anomaly detection in cloud microservices. In the field of cloud computing, ensuring the reliability of microservices is of paramount concern and yet a remarkably challenging task. Despite the large amount of research in this area, validation of anomaly detection algorithms in realistic environments is difficult to achieve. To address this challenge, we propose a framework to mimic the complex time series patterns representative of both normal and anomalous cloud microservices behaviors. We detail the pipeline implementation that allows deployment and management of microservices as well as the theoretical approach required to generate anomalies. Two datasets generated using the proposed framework have been made publicly available through GitHub., Comment: The paper has been accepted by the 10th International Conference on Machine Learning, Optimization and Data Science

Large Language Models (LLMs) have become pivotal in advancing natural language processing, yet their potential to perpetuate biases poses significant concerns. This paper introduces a new framework employing Direct Preference Optimization (DPO) to mitigate gender, racial, and religious biases in LLM-generated English text. By developing a loss function that favors less biased over biased completions, our approach cultivates a preference for respectful and non-discriminatory language in LLMs. We also contribute a manually designed dataset for training LLMs to recognize and correct biases. This dataset encompasses a diverse range of prompts paired with both biased and unbiased completions. Implementing this approach on the Microsoft Phi-2 model, we demonstrate substantial reductions in biased outputs as our model outperforms the baseline model on almost all bias benchmarks. Our model also achieves better performance compared to other open-source models on most benchmarks. By reducing biases in the language generated by the model, our study marks a significant step towards developing more ethical and socially responsible LLMs. We publicly release BiasDPO dataset on HuggingFace.

We propose a deep generative approach using latent temporal processes for modeling and holistically analyzing complex disease trajectories, with a particular focus on Systemic Sclerosis (SSc). We aim to learn temporal latent representations of the underlying generative process that explain the observed patient disease trajectories in an interpretable and comprehensive way. To enhance the interpretability of these latent temporal processes, we develop a semi-supervised approach for disentangling the latent space using established medical knowledge. By combining the generative approach with medical definitions of different characteristics of SSc, we facilitate the discovery of new aspects of the disease. We show that the learned temporal latent processes can be utilized for further data analysis and clinical hypothesis testing, including finding similar patients and clustering SSc patient trajectories into novel sub-types. Moreover, our method enables personalized online monitoring and prediction of multivariate time series with uncertainty quantification., Comment: Accepted at Machine Learning for Healthcare 2024. arXiv admin note: substantial text overlap with arXiv:2311.08149

We present a study of the weak lensing matter profiles of 698 South Pole Telescope (SPT) thermal Sunyaev-Zel'dovich effect (tSZE) selected galaxy clusters in the redshift range $0.25

We report new radio observations of SDSS J090122.37+181432.3, a strongly lensed star-forming galaxy at $z=2.26$. We image 1.4 GHz (L-band) and 3 GHz (S-band) continuum using the VLA and 1.2 mm (band 6) continuum with ALMA, in addition to the CO(7-6) and CI(${\rm ^3P_2\rightarrow ^3\!P_1}$) lines, all at $\lesssim1.^{\prime\prime}7$ resolution. Based on the VLA integrated flux densities, we decompose the radio spectrum into its free-free (FF) and non-thermal components. The infrared-radio correlation (IRRC) parameter $q_{\rm TIR}=2.65_{-0.31}^{+0.24}$ is consistent with expectations for star forming galaxies. We obtain radio continuum-derived SFRs that are free of dust extinction, finding $\rm {620}_{-220}^{+280}\,M_\odot\,yr^{-1}$, $\rm {230}_{-160}^{+570}\,M_\odot\,yr^{-1}$, and $\rm {280}_{-120}^{+460}\,M_\odot\,yr^{-1}$ from the FF emission, non-thermal emission, and when accounting for both emission processes, respectively, in agreement with previous results. We estimate the gas mass from the CI(${\rm ^3P_2\rightarrow ^3\!P_1}$) line as $M_{\rm gas}=(1.2\pm0.2)\times10^{11}\,M_\odot$, which is consistent with prior CO(1-0)-derived gas masses. Using our new IR and radio continuum data to map the SFR, we assess the dependence of the Schmidt-Kennicutt relation on choices of SFR and gas tracer for $\sim{\rm kpc}$ scales. The different SFR tracers yield different slopes, with the IR being the steepest, potentially due to highly obscured star formation in J0901. The radio continuum maps have the lowest slopes and overall fidelity for mapping the SFR, despite producing consistent total SFRs. We also find that the Schmidt-Kennicutt relation slope is flattest when using CO(7-6) or CI(${\rm ^3P_2\rightarrow ^3\!P_1}$) to trace gas mass, suggesting that those transitions are not suitable for tracing the bulk molecular gas in galaxies like J0901., Comment: 28 pages, 13 figures, 9 tables

We present the joint tomographic analysis of galaxy-galaxy lensing and galaxy clustering in harmonic space, using galaxy catalogues from the first three years of observations by the Dark Energy Survey (DES Y3). We utilise the redMaGiC and MagLim catalogues as lens galaxies and the METACALIBRATION catalogue as source galaxies. The measurements of angular power spectra are performed using the pseudo-$C_\ell$ method, and our theoretical modelling follows the fiducial analyses performed by DES Y3 in configuration space, accounting for galaxy bias, intrinsic alignments, magnification bias, shear magnification bias and photometric redshift uncertainties. We explore different approaches for scale cuts based on non-linear galaxy bias and baryonic effects contamination. Our fiducial covariance matrix is computed analytically, accounting for mask geometry in the Gaussian term, and including non-Gaussian contributions and super-sample covariance terms. To validate our harmonic space pipelines and covariance matrix, we used a suite of 1800 log-normal simulations. We also perform a series of stress tests to gauge the robustness of our harmonic space analysis. In the $\Lambda$CDM model, the clustering amplitude $S_8 =\sigma_8(\Omega_m/0.3)^{0.5}$ is constrained to $S_8 = 0.704\pm 0.029$ and $S_8 = 0.753\pm 0.024$ ($68\%$ C.L.) for the redMaGiC and MagLim catalogues, respectively. For the $w$CDM, the dark energy equation of state is constrained to $w = -1.28 \pm 0.29$ and $w = -1.26^{+0.34}_{-0.27}$, for redMaGiC and MagLim catalogues, respectively. These results are compatible with the corresponding DES Y3 results in configuration space and pave the way for harmonic space analyses using the DES Y6 data., Comment: To be submitted to MNRAS

The residuals of the distance moduli of Type Ia supernovae (SN Ia) relative to a Hubble diagram fit contain information about the inhomogeneity of the universe, due to weak lensing magnification by foreground matter. By correlating the residuals of the Dark Energy Survey Year 5 SN Ia sample (DES-SN5YR) with extra-galactic foregrounds from the DES Y3 Gold catalog, we detect the presence of lensing at $6.0 \sigma$ significance. This is the first detection with a significance level above $5\sigma$. Constraints on the effective mass-to-light ratios and radial profiles of dark-matter haloes surrounding individual galaxies are also obtained. We show that the scatter of SNe Ia around the Hubble diagram is reduced by modifying the standardisation of the distance moduli to include an easily calculable de-lensing (i.e., environmental) term. We use the de-lensed distance moduli to recompute cosmological parameters derived from SN Ia, finding in Flat $w$CDM a difference of $\Delta \Omega_{\rm M} = +0.036$ and $\Delta w = -0.056$ compared to the unmodified distance moduli, a change of $\sim 0.3\sigma$. We argue that our modelling of SN Ia lensing will lower systematics on future surveys with higher statistical power. We use the observed dispersion of lensing in DES-SN5YR to constrain $\sigma_8$, but caution that the fit is sensitive to uncertainties at small scales. Nevertheless, our detection of SN Ia lensing opens a new pathway to study matter inhomogeneity that complements galaxy-galaxy lensing surveys and has unrelated systematics., Comment: Submitted to MNRAS

We present $griz$ photometric light curves for the full 5 years of the Dark Energy Survey Supernova program (DES-SN), obtained with both forced Point Spread Function (PSF) photometry on Difference Images (DIFFIMG) performed during survey operations, and Scene Modelling Photometry (SMP) on search images processed after the survey. This release contains $31,636$ DIFFIMG and $19,706$ high-quality SMP light curves, the latter of which contains $1635$ photometrically-classified supernovae that pass cosmology quality cuts. This sample spans the largest redshift ($z$) range ever covered by a single SN survey ($0.1

We report constraints on a variety of non-standard cosmological models using the full 5-year photometrically-classified type Ia supernova sample from the Dark Energy Survey (DES-SN5YR). Both Akaike Information Criterion (AIC) and Suspiciousness calculations find no strong evidence for or against any of the non-standard models we explore. When combined with external probes, the AIC and Suspiciousness agree that 11 of the 15 models are moderately preferred over Flat-$\Lambda$CDM suggesting additional flexibility in our cosmological models may be required beyond the cosmological constant. We also provide a detailed discussion of all cosmological assumptions that appear in the DES supernova cosmology analyses, evaluate their impact, and provide guidance on using the DES Hubble diagram to test non-standard models. An approximate cosmological model, used to perform bias corrections to the data holds the biggest potential for harbouring cosmological assumptions. We show that even if the approximate cosmological model is constructed with a matter density shifted by $\Delta\Omega_m\sim0.2$ from the true matter density of a simulated data set the bias that arises is sub-dominant to statistical uncertainties. Nevertheless, we present and validate a methodology to reduce this bias., Comment: Published to MNRAS on 20 August 2024; v2 updates to the accepted version

We present a precise measurement of cosmological time dilation using the light curves of 1504 type Ia supernovae from the Dark Energy Survey spanning a redshift range $0.1\lesssim z\lesssim 1.2$. We find that the width of supernova light curves is proportional to $(1+z)$, as expected for time dilation due to the expansion of the Universe. Assuming type Ia supernovae light curves are emitted with a consistent duration $\Delta t_{\rm em}$, and parameterising the observed duration as $\Delta t_{\rm obs}=\Delta t_{\rm em}(1+z)^b$, we fit for the form of time dilation using two methods. Firstly, we find that a power of $b \approx 1$ minimises the flux scatter in stacked subsamples of light curves across different redshifts. Secondly, we fit each target supernova to a stacked light curve (stacking all supernovae with observed bandpasses matching that of the target light curve) and find $b=1.003\pm0.005$ (stat) $\pm\,0.010$ (sys). Thanks to the large number of supernovae and large redshift-range of the sample, this analysis gives the most precise measurement of cosmological time dilation to date, ruling out any non-time-dilating cosmological models at very high significance., Comment: 14 pages, 13 figures. Updated in response to reviewer feedback. Accepted for publication in the Monthly Notices of the Royal Astronomical Society (MNRAS)

We measure the current expansion rate of the Universe, Hubble's constant $H_0$, by calibrating the absolute magnitudes of supernovae to distances measured by Baryon Acoustic Oscillations. This `inverse distance ladder' technique provides an alternative to calibrating supernovae using nearby absolute distance measurements, replacing the calibration with a high-redshift anchor. We use the recent release of 1829 supernovae from the Dark Energy Survey spanning $0.01\lt z \lt1.13$ anchored to the recent Baryon Acoustic Oscillation measurements from DESI spanning $0.30 \lt z_{\mathrm{eff}} \lt 2.33$. To trace cosmology to $z=0$, we use the third-, fourth- and fifth-order cosmographic models, which, by design, are agnostic about the energy content and expansion history of the universe. With the inclusion of the higher-redshift DESI-BAO data, the third-order model is a poor fit to both data sets, with the fourth-order model being preferred by the Akaike Information Criterion. Using the fourth-order cosmographic model, we find $H_0=67.19^{+0.66}_{-0.64}\mathrm{~km} \mathrm{~s}^{-1} \mathrm{~Mpc}^{-1}$, in agreement with the value found by Planck without the need to assume Flat-$\Lambda$CDM. However the best-fitting expansion history differs from that of Planck, providing continued motivation to investigate these tensions.