47 results on '"Alexey Kamyshny"'
Search Results
2. Turnover Rates of Intermediate Sulfur Species (Sx2-, S0, S2O32-, S4O62-, SO32-) in Anoxic Freshwater and Sediments
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Alyssa J. Findlay and Alexey Kamyshny
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sulfur ,sulfide oxidation ,intermediate sulfur species ,sulfur biogeochemistry ,thiosulfate ,Microbiology ,QR1-502 - Abstract
The microbial reduction of sulfate to sulfide coupled to organic matter oxidation followed by the transformation of sulfide back to sulfate drives a dynamic sulfur cycle in a variety of environments. The oxidative part of the sulfur cycle in particular is difficult to constrain because the eight electron oxidation of sulfide to sulfate occurs stepwise via a suite of biological and chemical pathways and produces a wide variety of intermediates (Sx2-, S0, S2O32-, S4O62-, and SO32-), which may in turn be oxidized, reduced or disproportionated. Although the potential processes affecting these intermediates are well-known from microbial culture and geochemical studies, their significance and rates in the environment are not well constrained. In the study presented here, time-course concentration measurements of intermediate sulfur species were made in amended freshwater water column and sediment incubation experiments in order to constrain consumption rates and processes. In sediment incubations, consumption rates were Scolloidal0>Sx2->SO32-≈ S4O62-> S2O32-, which is consistent with previous measurements of SO32-, S4O62-, and S2O32- consumption rates in marine sediments. In water column incubations, however, the relative reactivity was Scolloidal0>SO32->Sx2-> S2O32-> S4O62-. Consumption of thiosulfate, tetrathionate and sulfite was primarily biological, whereas it was not possible to distinguish between abiotic and biological polysulfide consumption in either aqueous or sediment incubations. Scolloidal0 consumption in water column experiments was biologically mediated, however, rapid sedimentary consumption was likely due to reactions with iron minerals. These experiments provide important constraints on the biogeochemical reactivity of intermediate sulfur species and give further insight into the diversity of biological and geochemical processes that comprise (cryptic) environmental sulfur cycling.
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- 2017
- Full Text
- View/download PDF
3. Impact of Aeolian Dry Deposition of Reactive Iron Minerals on Sulfur Cycling in Sediments of the Gulf of Aqaba
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Barak Blonder, Valeria Boyko, Alexandra V. Turchyn, Gilad Antler, Uriel Sinichkin, Nadav Knossow, Rotem Klein, and Alexey Kamyshny
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Red Sea ,Gulf of Aqaba ,aeolian dust deposition ,highly reactive iron ,manganese ,sulfide oxidation intermediates ,Microbiology ,QR1-502 - Abstract
The Gulf of Aqaba is an oligotrophic marine system with oxygen-rich water column and organic carbon-poor sediments (≤0.6% at sites that are not influenced by anthropogenic impact). Aeolian dust deposition from the Arabian, Sinai, and Sahara Deserts is an important source of sediment, especially at the deep-water sites of the Gulf, which are less affected by sediment transport from the Arava Desert during seasonal flash floods. Microbial sulfate reduction in sediments is inferred from the presence of pyrite (although at relatively low concentrations), the presence of sulfide oxidation intermediates, and by the sulfur isotopic composition of sulfate and solid-phase sulfides. Saharan dust is characterized by high amounts of iron minerals such as hematite and goethite. We demonstrated, that the resulting high sedimentary content of reactive iron(III) (hydr)oxides, originating from this aeolian dry deposition of desert dust, leads to fast re-oxidation of hydrogen sulfide produced during microbial sulfate reduction and limits preservation of reduced sulfur in the form of pyrite. We conclude that at these sites the sedimentary sulfur cycle may be defined as cryptic.
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- 2017
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- View/download PDF
4. Thermodynamic constants of formation of disulfide anion in aqueous solutions
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Khoren Avetisyan and Alexey Kamyshny
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Geochemistry and Petrology - Published
- 2022
5. Kinetics and mechanism of polysulfides and elemental sulfur formation by a reaction between hydrogen sulfide and δ-MnO2
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George W. Luther, Khoren Avetisyan, Irina Zweig, and Alexey Kamyshny
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Bisulfide ,Hydrogen sulfide ,Inorganic chemistry ,chemistry.chemical_element ,Manganese ,engineering.material ,Redox ,Sulfur ,Reaction rate ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,engineering ,Pyrite ,Polysulfide - Abstract
Formation rates for various products of hydrogen sulfide oxidation by δ-MnO2 were studied as a function of pH, temperature, concentration of the reactants, and ionic strength at the environmentally-relevant conditions. The main goals of this work were studying the effects of these parameters on speciation of zero-valent sulfur, including individual polysulfides and revealing the mechanism of its formation. A reaction between hydrogen sulfide and manganese dioxide is the fastest environmentally-relevant abiotic process of polysulfides formation, reactive sulfur species, which participate in complexation of metals, pyrite formation, sulfurization of organic matter and may serve as a substrate for microorganisms. In the pH range of 7.0 to 10.5, zero-valent sulfur accounted for > 55% of the sulfur in the products of hydrogen sulfide oxidation, while at pH ≥ 7.5, the formation rates of polysulfide zero-valent sulfur were higher than those of particulate zero-valent sulfur formation. Speciation of polysulfides on the initial stage of the reaction shows significant shift toward the higher polysulfides compared to their speciation calculated under assumption of thermodynamic equilibrium in both H2S - Sn2− - S8(aq) - α-S8 and H2S - Sn2− - S8(aq) - S8(coll) systems. We suggest that the shift in the speciation of polysulfide system results from the presence of a short-living highly reactive sulfur atoms, which are formed on the first stage of the reaction: two-electron transfer from hydrogen sulfide to manganese dioxide. Results of this study provide constraints on the rates of polysulfide formation at the redox interfaces of the stratified aquatic systems, and allows quantitative assessment of their role in sulfur cycling.
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- 2021
6. Theoretical estimates of equilibrium sulfur isotope effects among aqueous polysulfur and associated compounds with applications to authigenic pyrite formation and hydrothermal disproportionation reactions
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Daniel L. Eldridge, James Farquhar, and Alexey Kamyshny
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Thiosulfate ,chemistry.chemical_classification ,Sulfide ,Stable isotope ratio ,Inorganic chemistry ,chemistry.chemical_element ,Sulfur cycle ,Disproportionation ,010402 general chemistry ,010502 geochemistry & geophysics ,01 natural sciences ,Sulfur ,0104 chemical sciences ,chemistry.chemical_compound ,Isotope fractionation ,chemistry ,13. Climate action ,Geochemistry and Petrology ,Polysulfide ,0105 earth and related environmental sciences - Abstract
Author(s): Eldridge, DL; Kamyshny, A; Farquhar, J | Abstract: Inorganic polysulfur compounds (polysulfides, Sx2-; polysulfur radical ions, Sx·-; thiosulfate, S2O32-; polythionate, SxO62-; elemental sulfur, e.g. S8) participate in numerous geochemical processes related to the sulfur cycle. These include authigenic pyrite formation in sediments undergoing early stages of diagenesis, reactions associated with magmatic-hydrothermal processes, and numerous other aquatic sulfur redox processes (e.g., pyrite and sulfide oxidation). Sulfur isotope fractionations among many of these and associated compounds (e.g., H2S, HSO4-) are either unknown or unconstrained over wide ranges of temperatures. We present theoretical estimates of equilibrium sulfur isotope fractionation factors among aqueous polysulfur compounds (including select polysulfides, polysulfur radical anions, and polythionates) and select aqueous sulfide and sulfate compounds that correspond to all three stable isotope ratios of sulfur (33S/32S, 34S/32S, 36S/32S). Our estimates are based on electronic structure calculations performed at the B3LYP/6–31+G(d,p) level of theory and basis set implemented in concert with an explicit solvation model whereby molecules are encapsulated in water clusters of varying size (30–52 H2O) to simulate the aqueous solvation environment. These calculations yield relatively small magnitude fractionation factors between aqueous polysulfides, polysulfur radicals, and reduced sulfur moieties in polythionates relative to the aqueous sulfide compounds but reveal numerous crossovers that result in non-intuitive temperature dependencies. Our predictions of 34S/32S-based fractionation factors among aqueous sulfur compounds generally agree with previous experimental constraints where available within estimated uncertainties (e.g., HSO4-/H2S(aq), H2S(aq)/HS-, HSO4-/S0, H2S(aq)/S0). We use our calculations to explore equilibrium isotope fractionations among polysulfur and sulfide compounds that are precursors to authigenic pyrite in the framework of established mechanisms (e.g., the polysulfide mechanism). We examine possible explanations for why pyrite formation may be associated with relatively small isotope fractionation with respect to precursor aqueous sulfur compounds. We additionally use our theoretical calculations to constrain multiple sulfur isotope (33S/32S, 34S/32S, 36S/32S) mass balance models associated with the abiotic hydrolytic disproportionation of intermediate sulfur compounds (SO2, S8, S3·-) relevant to hydrothermal-magmatic-volcanic systems in order to illustrate the potential for subtle but potentially resolvable effects expressed in values of Δ33S and Δ36S associated with these processes. We apply a SO2 disproportionation mass balance model based on previous work but newly constrained by our theoretical calculations to (hyper-) acid crater lakes associated with active volcanoes, and newly highlight the potential for the utility of multiple sulfur isotope analyses in volcanic gas monitoring and constraining sulfur cycling processes in such systems.
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- 2021
7. Kinetics and mechanism of the reaction between dimethyl trisulfide and cyanide
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Alexey Kamyshny and Irina Kurashova
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Thiosulfate ,Tetrathionate ,010504 meteorology & atmospheric sciences ,Cyanide ,Inorganic chemistry ,010501 environmental sciences ,01 natural sciences ,Reaction rate ,chemistry.chemical_compound ,Reaction rate constant ,chemistry ,Nucleophile ,Geochemistry and Petrology ,Chemistry (miscellaneous) ,Environmental Chemistry ,Dimethyl trisulfide ,Polysulfide ,0105 earth and related environmental sciences - Abstract
Environmental context Dimethyl trisulfide (DMTS) is a malodorous compound formed from decomposing algal matter and can severely compromise the quality of drinking water. The reactivity of DMTS toward cyanide was studied in aqueous solutions at environmentally relevant conditions. It was found that the half-lives of DMTS in the presence of free cyanide varied from several months to several thousand years depending on environmental conditions. Abstract Organically bound sulfur in the form of mono-, di- and polysulfide bridges constitutes a significant fraction of this element in recent and ancient sediments. In water columns of lakes, the concentrations of organo-sulfur compounds are much lower, and they are present in the form of malodorous dimethyl polysulfides. Currently, information regarding reactivity of organic polysulfides towards nucleophiles that are stronger than hydroxyl anions is lacking. In this work, the reaction kinetics of dimethyl trisulfide (DMTS) with the strong nucleophile and important environmental pollutant cyanide as a function of concentrations of reactants, pH and temperature were studied. It was found that the reaction rate constant as well as the activation energy of the reaction strongly depend on pH. The experimental data agree well with the existence of two distinct pathways: slow reaction between protonated cyanide and DMTS under acidic and neutral conditions and fast reaction between cyanide anion and DMTS under highly alkaline conditions. However, reactions of DMTS with the iron cyanide complexes hexacyanoferrate(ii) and hexacyanoferrate(iii) have no environmental significance since they are slower than the rate of DMTS decomposition. Under environmentally relevant conditions, rates of reactions of free cyanide with DMTS will be lower than the reaction with inorganic polysulfides or tetrathionate, but faster than the reaction with thiosulfate. Examples of application of kinetic parameters for calculation of rates of cyanide consumption in industrial and non-polluted natural aquatic systems as well as a protocol for quantification of organic polysulfide sulfur based on reaction with cyanide are provided.
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- 2021
8. Petrological and chemical characterizations of pristine and reworked phosphorites from Negev, Israel: Insights into industrial usage
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Amit Levy, Aya Schneider-Mor, Faina Gelman, and Alexey Kamyshny
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Geology ,Earth-Surface Processes - Published
- 2023
9. Iron speciation in southern Israel phosphates: paleoenvironmental implications
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Irina Zweig, Alexey Kamyshny, Nadya Teutsch, and Aya Schneider-Mor
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Phosphorite deposits in southern Israel alternate between low phosphorous pristine phosphorites and high phosphorous reworked phosphorites. Deposition of pristine phosphorites occurs at high productivity and sedimentation rates under suboxic to anoxic conditions, whereas deposition of reworked phosphorites has been attributed to oxidizing conditions at low sedimentation rates during high-energy episodes accompanied by bioturbation. In this study, iron speciation in primary and reworked phosphates was used for investigating paleoenvironmental conditions of the two phosphate facies. Studied phosphates include low iron sections (Zin and Rotem synclines, North Negev) and iron-rich phosphates deposit (Ein-Ofarim, North Arava). Iron speciation in different synclines provides information on diagenetic processes during phosphogenesis and reworking processes.Pristine phosphorites are associated with substantially higher total iron (FeT) and highly reactive iron (FeHR) contents compared to the reworked phosphorites. On the other hand, the FeHR to FeT ratio is higher in reworked phosphorites. The pyrite Fe (Fepy) fraction to FeHR ratio is diagnostic for non-sulfidic water conditions for all studied phosphorites. The combination of FeHR/FeT and Fepy/FeHR paleoredox proxies points to possibly anoxic to anoxic-ferruginous sedimentary settings for pristine phosphorites while reworked phosphorites seem to be formed under more anoxic conditions. However, this observation opposes the general concept of reworked facies formation under aerated conditions. As ferruginous conditions are implausible, an alternative explanation for the observed iron speciation could be external input (possibly aeolian dust) of iron-rich particles during initial phosphate. During the reworking processes, removal of poorly reactive iron-rich smectites during reworking processes, although both fractions were depleted by up to 90%. Thus, the observed differences in FeHR to FeT ratio between pristine and reworked phosphates were likely caused by physical processes rather than changes in environmental redox conditions.
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- 2022
10. Kinetics of Thiocyanate Formation by Reaction of Cyanide with Tetrathionate
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Alexey Kamyshny and Irina Kurashova
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Tetrathionate ,Order of reaction ,010504 meteorology & atmospheric sciences ,Thiocyanate ,Cyanide ,Kinetics ,Inorganic chemistry ,Hydrogen cyanide ,010501 environmental sciences ,01 natural sciences ,Decomposition ,chemistry.chemical_compound ,Geophysics ,Reaction rate constant ,chemistry ,Geochemistry and Petrology ,0105 earth and related environmental sciences - Abstract
In aquatic systems a reaction between tetrathionate and cyanide results in the formation of thiocyanate. We have studied kinetics of the reactions of tetrathionate with free cyanide and two cyanide complexes, hexacyanoferrate(II) and hexacyanoferrate(III), at the environmentally relevant conditions. For the reaction between tetrathionate and free cyanide, the rate constant and the activation energy, but not the reaction order, strongly depend on pH. Our observations allow to propose the following pathways of thiocyanate formation by the reactions of free cyanide with tetrathionate: (1) tetrathionate reacts relatively slow with hydrogen cyanide at acidic and neutral conditions; and (2) tetrathionate reacts relatively fast with cyanide anion under highly alkaline conditions. Depending on environmental conditions, the half-lives of the reaction between free cyanide and tetrathionate will be in the ranges of hours to several years. Reactions of tetrathionate with hexacyanoferrate(II) and hexacyanoferrate(III) have no environmental significance as they are slower than the decomposition of tetrathionate. Strategy for improvement of analytical protocols for analysis of tetrathionate and cyanide is proposed based on the detected kinetics parameters.
- Published
- 2020
11. Sulfur, manganese and iron transformations in low-sulfate iron-rich Lake Sihailongwan
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Alexey Kamyshny, Valeria Boyko, Khoren Avetisyan, Alyssa Findlay, Qingjun Guo, Xi Yang, and Andre Pellerin
- Published
- 2022
12. Kinetics of Thiocyanate Formation by Reaction of Cyanide and Its Iron Complexes with Thiosulfate
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Alexey Kamyshny and Irina Kurashova
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Thiosulfate ,Reaction rate ,chemistry.chemical_compound ,Geophysics ,Coke oven ,chemistry ,Aqueous medium ,Thiocyanate ,Geochemistry and Petrology ,Cyanide ,Inorganic chemistry ,Kinetics ,Ph range - Abstract
Reactions between cyanide and compounds, which contain S–S bonds, in aqueous media result in formation of thiocyanate. In this work, we studied the kinetics of reactions of thiosulfate with free cyanide and its complexes under environmental conditions. Rates of reactions between cyanide species and thiosulfate decrease in the following order: CN− > HCN > [Fe(CN)6]3− > [Fe(CN)6]4−. However, at neutral and slightly acidic pH range, reaction of thiosulfate with iron-cyanide complexes outcompetes its reaction with free cyanide, which exists in equilibrium with complexed cyanide. At environmentally relevant conditions, the characteristic time of reaction between free cyanide and thiosulfate was found to be tens of thousands of years, while for iron-cyanide complexes it was found to be hundreds to millions of years. Examples of application of kinetic parameters for calculation of rates of cyanide consumption in industrial (coke oven wastewater) and non-polluted natural aquatic system (Delaware Great Marsh) are provided.
- Published
- 2019
13. Eutrophication leads to the formation of a sulfide-rich deep-water layer in Lake Sevan, Armenia
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Alexey Kamyshny, Natella Mirzoyan, Khoren Avetisyan, Rayford B. Payne, and Vardan Hayrapetyan
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chemistry.chemical_classification ,Geologic Sediments ,Sulfide ,Hydrogen sulfide ,Water ,Armenia ,Eutrophication ,Sulfides ,Inorganic Chemistry ,chemistry.chemical_compound ,Lakes ,δ34S ,Water column ,Nitrate ,chemistry ,Environmental chemistry ,Environmental Chemistry ,Environmental science ,Sulfate ,Hypolimnion ,General Environmental Science - Abstract
Lake Sevan is a meso-eutrophic water body, which was severely impacted by anthropogenic level decrease, pollution and eutrophication during the last century. Starting in the 1970s, these processes resulted in the formation of an oxygen-depleted hypolimnion during summer-autumn stratification of the lake. In this work, we demonstrate for the first time that eutrophication of the lake leads not only to the full depletion of oxygen and nitrate in the hypolimnion but as well to the presence of sulfate-reducing microorganisms and toxic hydrogen sulfide. Concentrations of hydrogen sulfide in the hypolimnion of Major and Minor Sevan in October were as high as 9 and 39 μM, respectively. In October 2019, 66 % of lake's bottom was covered by sulfidic waters, while the fraction of sulfidic water volume reached 19 %. Values of δ34S for hypolimnetic sulfide are lower by only 7-12 ‰ compared to epilimnetic sulfate, while δ33S values of sulfide are similar to the δ33S values of sulfate. These isotopic fingerprints are not consistent with microbial sulfate reduction as the sole source of hydrogen sulfide in the hypolimnion. We attribute the formation of a sulfidic deep-water layer to a combination of microbial sulfate reduction in the water column and diffusion of hydrogen sulfide from the sediments.
- Published
- 2021
14. Iron and sulfur speciation and cycling in the sediments of marine systems located in arid environments: the northern Red Sea
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Alexey Kamyshny, Jürgen Pätzold, and Valeria Boyko
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Total organic carbon ,media_common.quotation_subject ,Hydrogen sulfide ,Sulfur cycle ,chemistry.chemical_element ,Geology ,engineering.material ,Sulfur ,Speciation ,chemistry.chemical_compound ,chemistry ,Environmental chemistry ,engineering ,Aeolian processes ,Pyrite ,Sulfate ,media_common - Abstract
The high fluxes of iron minerals associated with aeolian dry deposition may result in an anomalously high reactive iron content and the rapid reoxidation of hydrogen sulfide in sediments. This will prevent the formation of pyrite and result in a ‘cryptic’ sulfur cycle. We studied the cycling of iron and sulfur in deep water (>800 m water depth) sediments of the Red Sea and its northern extension, the Gulf of Aqaba. We found that the reactive iron content in the surface sediments of the Gulf of Aqaba and the Red Sea is high, whereas the amount of sulfur-bound iron is very low and decreases with the water depth. The presence of trace amounts of pyrite and zero-valent sulfur, as well as the isotopic compositions of sulfate and pyrite, which are consistent with sulfate reduction under substrate-limiting conditions, suggest that cryptic sulfur cycling is likely to be a result of the rapid reoxidation of hydrogen sulfide rather than the suppression of microbial sulfate reduction. The low amount of reactive iron and high organic carbon content in the sediments of the Shaban Deep, which are overlain by hypersaline hydrothermal brines, result in a non-cryptic sulfur cycle characterized by the preservation of pyrite in the sediments. Supplementary material: Data for sulfur speciation, iron speciation and sulfur isotope composition are available at https://doi.org/10.6084/m9.figshare.c.5508155 Thematic collection: This article is part of the Sulfur in the Earth system collection available at: https://www.lyellcollection.org/cc/sulfur-in-the-earth-system
- Published
- 2021
15. Iron and sulfide nanoparticle formation and transport in nascent hydrothermal vent plumes
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George W. Luther, Mustafa Yücel, Alexey Kamyshny, Alyssa Findlay, Amy Gartman, and Emily R. Estes
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0301 basic medicine ,ATLANTIC ,Sulfide ,EQUILIBRIA ,Science ,Geochemistry ,General Physics and Astronomy ,SULFUR ,02 engineering and technology ,engineering.material ,OXIDATION ,General Biochemistry, Genetics and Molecular Biology ,Hydrothermal circulation ,Article ,Metal ,03 medical and health sciences ,Settling ,lcsh:Science ,chemistry.chemical_classification ,PYRITE FES2 ,Multidisciplinary ,FRACTIONATION ,General Chemistry ,021001 nanoscience & nanotechnology ,EAST PACIFIC RISE ,Plume ,030104 developmental biology ,chemistry ,visual_art ,PRECIPITATION ,engineering ,visual_art.visual_art_medium ,ISOTOPE ,Particle ,Environmental science ,lcsh:Q ,Pyrite ,0210 nano-technology ,GEOCHEMISTRY ,Hydrothermal vent - Abstract
Deep-sea hydrothermal vents are a significant source of dissolved metals to the global oceans, producing midwater plumes enriched in metals that are transported thousands of kilometers from the vent source. Particle precipitation upon emission of hydrothermal fluids controls metal speciation and the magnitude of metal export. Here, we document metal sulfide particles, including pyrite nanoparticles, within the first meter of buoyant plumes from three high-temperature vents at the East Pacific Rise. We observe a zone of particle settling 10–20 cm from the orifice, indicated by stable sulfur isotopes; however, we also demonstrate that nanoparticulate pyrite (FeS2) is not removed from the plume and can account for over half of the filtered Fe (≤0.2 µm) up to one meter from the vent orifice. The persistence of nanoparticulate pyrite demonstrates that it is an important mechanism for near-vent Fe stabilisation and highlights the potential role of nanoparticles in element transport., There has been much interest recently in the transport mechanisms of metals from hydrothermal vents. Here the authors found that nanoparticulate pyrite is not removed from the plume and can account for over 50% of filtered iron one metre from the vent mouth.
- Published
- 2019
16. Kinetics and mechanism of polysulfides formation by a reaction between hydrogen sulfide and orthorhombic cyclooctasulfur
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Alexey Kamyshny, Tamir Buchshtav, and Khoren Avetisyan
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010504 meteorology & atmospheric sciences ,Cyclooctasulfur ,Hydrogen sulfide ,Batch reactor ,Kinetics ,Inorganic chemistry ,010502 geochemistry & geophysics ,01 natural sciences ,6. Clean water ,Reaction rate ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Orthorhombic crystal system ,Polysulfide ,0105 earth and related environmental sciences - Abstract
A detailed study of kinetics of reaction between hydrogen sulfide and orthorhombic cyclooctasulfur at environmentally relevant conditions, which results in formation of inorganic polysulfides, was performed. Rates of reaction were measured as a function of pH, temperature and concentrations of S2− and S0 in airtight stirred batch reactor. Reaction was carried out at [S0]/[S2−]
- Published
- 2019
17. Dynamics of pyrite formation and organic matter sulfurization in organic-rich carbonate sediments
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Shimon Feinstein, Valeria Boyko, Lubna Shawar, Alexey Kamyshny, Ward Said-Ahmad, Itay Halevy, and Alon Amrani
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chemistry.chemical_classification ,010504 meteorology & atmospheric sciences ,Sulfide ,Chemistry ,engineering.material ,010502 geochemistry & geophysics ,01 natural sciences ,chemistry.chemical_compound ,Isotope fractionation ,δ34S ,13. Climate action ,Geochemistry and Petrology ,Environmental chemistry ,Kerogen ,engineering ,Carbonate ,Organic matter ,Pyrite ,Sulfate ,0105 earth and related environmental sciences - Abstract
Organic-rich carbonate sediments are deposited in a range of environments today and in the geologic past. A significant part of organic matter (OM) degradation in such sediments often occurs by microbial reduction of seawater sulfate, and the sulfide product may be preserved in pyrite and in organic sulfur (S) compounds. The isotopic composition (δ34S) of these phases can provide valuable information about S cycling in the ocean and in sediment porewaters, but only insofar as the processes governing these δ34S values are understood. To this end, we investigated the pathways, timing and interactions between pyrite and organic S formation during the deposition of organic-rich chalks. As a test case, we studied cores representing the thickest (∼350 m) and most complete Late Cretaceous organic-rich sequence along the southern Paleotethyan margin (central Israel). The organic S and OM contents show an inverse relation with the pyritic S content, which together with the uniform FePy/FeHR ratio (∼40%), suggest competition between organic S and pyrite formation. Both kerogen and pyritic S are 34S-depleted relative to Late Cretaceous marine sulfate (δ34S∼17–20‰), but the kerogen S is consistently and unusually 34S-enriched relative to coexisting pyrite by up to ∼38‰. Large S isotope fractionation (∼60‰) during microbial sulfate reduction necessary to reproduce the lowest pyrite δ34S values in the core, and relatively invariant δ34S values in organic S suggests that this large fractionation was approximately constant during deposition of the chalks in the core. Higher pyrite δ34S values observed in the most organic-rich parts of the core may be explained by Fe-limited pyrite formation, perhaps due to the reaction of Fe (e.g., complexation, sorption) with organic compounds. Lesser Fe availability, relative to the OM available for sulfate reduction, limits the ultimate abundance of pyrite, but importantly, it delays the formation of pyrite to deeper below the sediment-water interface, from 34S-enriched sulfide produced by Rayleigh distillation of a dwindling sulfate reservoir. Thus, it appears that competing Fe-OM, S-OM and Fe-S reactions can significantly affect the δ34S values recorded in pyrite in organic-rich carbonate sediments despite large and relatively constant microbial S isotope fractionation.
- Published
- 2018
18. Biogeochemical cycling of sulfur, manganese and iron in ferruginous limnic analog of Archean ocean
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André Pellerin, Alexey Kamyshny, Qingjun Guo, Khoren Avetisyan, Alyssa Findlay, Valeria Boyko, and Xi Yang
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Biogeochemical cycle ,Manganese ,010504 meteorology & atmospheric sciences ,Archean ,Iron ,Geochemistry ,chemistry.chemical_element ,010502 geochemistry & geophysics ,01 natural sciences ,chemistry.chemical_compound ,Ferruginous lake ,Water column ,chemistry ,Geochemistry and Petrology ,Epilimnion ,Analog of Archean ocean ,Environmental science ,Sedimentary rock ,Sulfate ,Sulfur isotope fractionation ,Chemical composition ,Sulfur ,0105 earth and related environmental sciences - Abstract
The early evolution of life on Earth was intimately coupled with the evolution of ocean chemical composition and redox conditions in Archean ocean. However, the measurements of chemical and isotopic compositions of Archean sedimentary rocks does not provide sufficient information for understanding the biogeochemical processes that characterized oceans during this period. In this research, the cycling of the redox-sensitive elements in the water column and sediments of the seasonally stratified Lake Sihailongwan, China, was studied. It was found that during the stratification, the concentrations of sulfate ions in the epilimnion were −1. The hypolimnion of the lake becomes anoxic and contains iron, manganese and low concentrations of hydrogen sulfide. These conditions are similar to those suggested to exist in the Archean ocean, and therefore the biogeochemical cycles in Lake Sihailongwan may be analogous to those in the Archean ocean. In Lake Sihailongwan, the chemocline is always deeper than the thermocline. The hypolimnion is supersaturated with respect to iron sulfide in August, while in May and October, this supersaturation is present only in the lower hypolimnion. The concentration profiles of the redox species in the water column and in the sediments show that dissolved iron(II) and manganese(II) diffuse from the sediments into the water column, while hydrogen sulfide and sulfate diffuse into the sediment. At the hypolimnion, the sulfur isotope fractionation values are consistent with microbial sulfate reduction, possibly combined, to a minor extent, with disproportionation of zero-valent sulfur. The absolute sulfur isotope fractionation factor increases between spring and autumn and decreases with water depth, possibly due to precipitation of iron sulfide in the lower hypolimnion. The fraction of highly reactive iron in the sediments is mainly composed of iron(II) carbonates and the most reactive iron(III) (hydr)oxide phases. Iron-based redox proxies are consistent with sediment deposition under ferruginous water column conditions. In the sediment, concentrations of sulfate and hydrogen sulfide are low, and sulfur isotope composition of sedimentary pyrite is equal to that of the epilimnetic sulfate. The obtained results demonstrated that despite a low sulfate concentration in the water column, sulfur isotope fractionation is high. However, due to the complete consumption of the sulfate reservoir, the large isotope fractionation is not preserved in the sedimentary record.
- Published
- 2021
19. Oxygen Consumption in Permeable and Cohesive Sediments of the Gulf of Aqaba
- Author
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Alexey Kamyshny, Adi Torfstein, and Valeria Boyko
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0106 biological sciences ,010504 meteorology & atmospheric sciences ,010604 marine biology & hydrobiology ,Hydrogen sulfide ,Sediment ,chemistry.chemical_element ,01 natural sciences ,Oxygen ,chemistry.chemical_compound ,Waves and shallow water ,Geophysics ,Deposition (aerosol physics) ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Aeolian processes ,Environmental science ,Surface runoff ,Transect ,0105 earth and related environmental sciences - Abstract
Oxygen profiles were measured in the sediments of the Gulf of Aqaba (Red Sea), an oligotrophic marine system affected by episodic seasonal flash floods and intense aeolian dry deposition. Sediment cores were retrieved from shallow (15–45 m), intermediate (250–561 m) and deep (700 m) water sites of south–north and east–west transects. Dissolved oxygen concentrations were measured simultaneously by using microelectrodes and microoptodes immediately after sampling and after transportation. Oxygen penetration depths were found to increase from 2 to 5 mm at the shallow water sites with sandy permeable sediments to 10–21 mm at the deeper sites with cohesive muddy sediments. This increase corresponds to decrease in oxygen diffusive fluxes at the sediment–water interface and oxygen consumption rates with depth. Oxygen consumption rates exhibit local maxima at the oxic–anoxic sediment boundary, which may be attributed to oxygen reduction coupled to oxidation of dissolved Fe(II) and Mn(II) at deep and intermediate water sites and of hydrogen sulfide at shallow water sites. Microelectrodes and microoptodes measurements of cohesive sediments from deep and intermediate water sites yielded similar results. By comparison, the microoptodes displayed more robust measurements than microelectrodes in sandy near-shore sediments. This was attributed to their flexible fiber structure that is less likely to break or to abruptly displace sand particles. After transportation of sediment cores from Eilat to Beer Sheva followed by ≤ 24-h storage, no changes in oxygen fluxes and consumption rates were detected.
- Published
- 2018
20. Iron-controlled oxidative sulfur cycling recorded in the distribution and isotopic composition of sulfur species in glacially influenced fjord sediments of west Svalbard
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Volker Brüchert, Casey R. J. Hubert, Timothy G. Ferdelman, Benjamin Brunner, Natascha Riedinger, Laura Mariana Wehrmann, Michael J. Formolo, Bo Barker Jørgensen, Lisa C. Herbert, and Alexey Kamyshny
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Biogeochemical cycle ,010504 meteorology & atmospheric sciences ,Sulfide ,Mineralogy ,chemistry.chemical_element ,Manganese ,engineering.material ,Oxidative sulfur cycling ,010502 geochemistry & geophysics ,Arctic fjords ,01 natural sciences ,Isotopes of oxygen ,chemistry.chemical_compound ,Sediment biogeochemistry ,REDUCING BACTERIA ,STABLE SULFUR ,Geochemistry and Petrology ,Sulfate ,BACTERIAL SULFATE REDUCTION ,0105 earth and related environmental sciences ,chemistry.chemical_classification ,PYRITE FORMATION ,ELEMENTAL SULFUR ,Sulfur cycle ,Geology ,DISSIMILATORY SULFATE ,Sulfur ,OXYGEN-ISOTOPE ,ORGANIC-MATTER ,chemistry ,Sulfur and oxygen isotopes ,Environmental chemistry ,ARCTIC MARINE-SEDIMENTS ,Iron geochemistry ,engineering ,Pyrite ,SULFIDE OXIDATION - Abstract
This study investigates how glacially delivered reactive iron (oxyhydr) oxide and manganese oxide phases influence the biogeochemical cycling of sulfur in sediments of three Arctic fjords and how the biogeochemical signatures of these processes are preserved. Results reveal differences in the concentrations of dissolved iron and manganese in pore-waters and the concentration of solid-phase sulfur species within individual fjords and amongst the three fjords, likely controlled by the varying input of reactive iron (oxyhydr) oxides to the sediment. Broadly, the stations can be divided into three categories based on their biogeochemical signals. Stations in the first category, located in Smeerenburgfjorden, are characterized by relatively low concentrations of (easily) reducible particulate iron phases, increasing concentrations of iron monosulfides, pyrite, and elemental sulfur with depth, and low pore-water dissolved iron and manganese concentrations. Biogeochemical processes at these stations are primarily driven by organoclastic sulfate reduction, sulfur disproportionation and the subsequent reaction and sequestration of sulfide in the sediment as iron monosulfide and pyrite. Sulfur and oxygen isotope values of sulfate display progressive enrichment in heavy isotopes with depth at these stations. In contrast, concentrations of (easily) reducible particulate iron phases and pore-water dissolved iron (up to 850 mu M) and manganese (up to 650 mu M) are very high at stations of the second and third category, located in Kongsfjorden and Van Mijenfjorden, while iron monosulfide and pyrite contents are extremely low. The amount of pyrite and its isotope values in conjunction with organic sulfur compounds provide evidence for a detrital origin of a fraction of these sulfur compounds. At the Kongsfjorden and Van Mijenfjorden stations, oxidative pathways of the sedimentary sulfur cycle, controlled by the high availability of reducible particulate iron phases, play an important role, leading to the effective recycling of sulfide to sulfate through sulfur intermediates and concomitant resupply of the sulfate reservoir with S-32. In both fjords, elemental sulfur was only detected at the outer fjord stations grouped into the third category. Our study provides a framework for interpreting the Fe-S-C geochemistry of similar continental shelf areas in modern settings and ultimately for identifying these environments in the rock record.
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- 2017
21. Sulfide oxidation affects the preservation of sulfur isotope signals
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Qingjun Guo, Alyssa Findlay, Xi Yang, Alexey Kamyshny, Khoren Avetisyan, André Pellerin, and Valeria Boyko
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chemistry.chemical_classification ,010504 meteorology & atmospheric sciences ,Sulfide ,Isotope ,FRACTIONATION ,chemistry.chemical_element ,LOW-SULFATE ,Geology ,010502 geochemistry & geophysics ,01 natural sciences ,Sulfur ,LAKE ,BACTERIAL DISPROPORTIONATION ,chemistry ,13. Climate action ,SYSTEMS ,Environmental chemistry ,0105 earth and related environmental sciences - Abstract
The accumulation of oxygen in Earth’s atmosphere and oceans in the late Archean had profound implications for the planet’s biogeochemical evolution. Oxygen impacts sulfur cycling through the oxidation of sulfide minerals and the production of sulfate for microbial sulfate reduction (MSR). The isotopic signature of sulfur species preserved in the geologic record is affected by the prevailing biological and chemical processes and can therefore be used to constrain past oxygen and sulfate concentrations. Here, in a study of a late Archean analogue, we find that the sulfur isotopic signature in the water column of a seasonally stratified lake in southern China is influenced by MSR, whereas model results indicate that the isotopic signature of the underlying sediments can be best explained by concurrent sulfate reduction and sulfide oxidation. These data demonstrate that small apparent sulfur isotope fractionations (δ34Ssulfate-AVS = 4.2‰–1.5‰; AVS—acid volatile sulfides) can be caused by dynamic sulfur cycling at millimolar sulfate concentrations. This is in contrast to current interpretations of the isotopic record and indicates that small fractionations do not necessarily indicate very low sulfate or oxygen.
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- 2019
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22. Diurnal variations in sulfur transformations at the chemocline of a stratified freshwater lake
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Alexey Kamyshny, Khoren Avetisyan, Alyssa Findlay, and Werner Eckert
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Biogeochemical cycle ,010504 meteorology & atmospheric sciences ,Sulfide ,Hydrogen sulfide ,chemistry.chemical_element ,Chemocline ,01 natural sciences ,Sulfur cycle ,chemistry.chemical_compound ,Stratified lake ,Triple sulfur isotopes ,Phototrophic sulfide oxidation ,Environmental Chemistry ,Photic zone ,Sulfate ,0105 earth and related environmental sciences ,Earth-Surface Processes ,Water Science and Technology ,Thiosulfate ,chemistry.chemical_classification ,Seiche ,04 agricultural and veterinary sciences ,Sulfur ,chemistry ,Environmental chemistry ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries - Abstract
In order to characterize biogeochemical sulfur cycling in the metalimnion of a thermally stratified freshwater lake, we followed changes in the concentrations and isotopic composition of sulfur species during a 24-h period, during which the chemocline oscillated at an amplitude of 5.3 m due to internal wave activity. Hourly sampling at a fixed depth (17.1 m) enabled study of redox changes during the transition from oxic to sulfidic conditions and vice versa. The oxidation–reduction potential, pH, conductivity and turbidity correlated linearly with the water temperature (a proxy for depth relative to the chemocline). The highest concentrations of thiosulfate and sulfite were detected approximately 2.5 m below the chemocline. Concentrations of zero-valent sulfur increased ~ 10 fold when the chemocline rose into the photic zone due to phototrophic sulfide oxidation. Triple isotopic composition of sulfur species indicates a shift with depth from values typical for sulfate reduction right below the chemocline to values which may be explained by either sulfate reduction alone or by a combination of microbial sulfate reduction and microbial sulfate disproportionation. We conclude that consumption of hydrogen sulfide at the chemocline of Lake Kinneret is controlled by the combination of its chemical and/or chemotrophic oxidation to sulfur oxoanions and predominantly phototrophic oxidation to zero-valent sulfur.
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- 2019
23. Decomposition of dimethyl polysulfides under solar irradiation in oxic aqueous solutions
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Alexey Kamyshny and Tamir Buchshtav
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Aqueous solution ,010504 meteorology & atmospheric sciences ,chemistry.chemical_element ,Context (language use) ,010501 environmental sciences ,Photochemistry ,01 natural sciences ,Decomposition ,Sulfur ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Chemistry (miscellaneous) ,Environmental Chemistry ,Dimethyl disulfide ,Dimethyl trisulfide ,Polysulfide ,Chemical decomposition ,0105 earth and related environmental sciences - Abstract
Environmental context The quality of drinking water can be greatly compromised by the presence of dimethyl polysulfides. We studied the rate and mechanism of decomposition of dimethyl polysulfides in aqueous solution under solar irradiation, and found that they decompose photochemically in seconds to minutes, i.e. much faster than under dark conditions. These results suggest that photochemical pathways of dimethyl polysulfide decomposition may prevail in euphotic zones of natural aquatic systems. Abstract The presence of malodorous dimethyl polysulfides (DMPSs) has been documented in marine and limnic systems as well as in tap water distribution systems. These compounds compromise the quality of drinking water. Under oxic conditions and in the absence of radiation, DMPSs with n ≥ 3 sulfur atoms disproportionate into DMPSs with n + 1 and n − 1 sulfur atoms, and, finally, to dimethyl disulfide (DMDS) and S8. DMDS, in turn, decomposes to methyl mercaptan (MT) and methanesulfinic acid. Under these conditions, the half-lives of DMPSs vary from months for dimethyl pentasulfide (DM5S) to hundreds of thousands of years for DMDS. In this work, we studied the kinetics and mechanisms of the decomposition reactions of DMPSs with 2–5 sulfur atoms in aqueous solutions in the presence of oxygen and under exposure to solar radiation. The quantum yields of decomposition of DMPSs with 2, 3, 4 and 5 sulfur atoms do not depend on either the concentration of DMPSs or pH, and are 40 ± 10, 2.0 ± 0.2, 35 ± 10 and 10 ± 4 respectively. The quantum yields, which are higher than unity, suggest that under exposure to solar radiation the photochemical decomposition of DMPSs proceeds by a radical chain reaction mechanism. Half-lives of DMPSs in oxic aquatic solutions exposed to solar radiation under a very clear atmosphere and a solar elevation angle of 90 ° were calculated from the quantum yields and were found to be as low as 43 ± 13 s for DMDS, 40 ± 4 s for dimethyl trisulfide (DMTS), 2.1 ± 0.6 s for dimethyl tetrasulfide (DM4S) and 4.2 ± 1.7 s for DM5S.
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- 2020
24. Turnover Rates of Intermediate Sulfur Species (Sx2-, S0, S2O32-, S4O62-, SO32-) in Anoxic Freshwater and Sediments
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Alexey Kamyshny and Alyssa Findlay
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sulfur biogeochemistry ,0301 basic medicine ,Microbiology (medical) ,Biogeochemical cycle ,Sulfide ,030106 microbiology ,lcsh:QR1-502 ,chemistry.chemical_element ,sulfide oxidation ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Sulfate ,Original Research ,Tetrathionate ,chemistry.chemical_classification ,Thiosulfate ,thiosulfate ,Sulfur cycle ,Anoxic waters ,Sulfur ,intermediate sulfur species ,030104 developmental biology ,chemistry ,sulfur ,Environmental chemistry - Abstract
The microbial reduction of sulfate to sulfide coupled to organic matter oxidation followed by the transformation of sulfide back to sulfate drives a dynamic sulfur cycle in a variety of environments. The oxidative part of the sulfur cycle in particular is difficult to constrain because the eight electron oxidation of sulfide to sulfate occurs stepwise via a suite of biological and chemical pathways and produces a wide variety of intermediates (Sx2-, S0, S2O32-, S4O62-, and SO32-), which may in turn be oxidized, reduced or disproportionated. Although the potential processes affecting these intermediates are well-known from microbial culture and geochemical studies, their significance and rates in the environment are not well constrained. In the study presented here, time-course concentration measurements of intermediate sulfur species were made in amended freshwater water column and sediment incubation experiments in order to constrain consumption rates and processes. In sediment incubations, consumption rates were Scolloidal0>Sx2->SO32-≈ S4O62-> S2O32-, which is consistent with previous measurements of SO32-, S4O62-, and S2O32- consumption rates in marine sediments. In water column incubations, however, the relative reactivity was Scolloidal0>SO32->Sx2-> S2O32-> S4O62-. Consumption of thiosulfate, tetrathionate and sulfite was primarily biological, whereas it was not possible to distinguish between abiotic and biological polysulfide consumption in either aqueous or sediment incubations. Scolloidal0 consumption in water column experiments was biologically mediated, however, rapid sedimentary consumption was likely due to reactions with iron minerals. These experiments provide important constraints on the biogeochemical reactivity of intermediate sulfur species and give further insight into the diversity of biological and geochemical processes that comprise (cryptic) environmental sulfur cycling.
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- 2017
25. Impact of Aeolian Dry Deposition of Reactive Iron Minerals on Sulfur Cycling in Sediments of the Gulf of Aqaba
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Rotem Klein, Nadav Knossow, Alexandra V. Turchyn, Alexey Kamyshny, Barak Blonder, Gilad Antler, Valeria Boyko, and Uriel Sinichkin
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Microbiology (medical) ,010504 meteorology & atmospheric sciences ,Sulfide ,sub-01 ,Hydrogen sulfide ,lcsh:QR1-502 ,chemistry.chemical_element ,Mineralogy ,Mineral dust ,engineering.material ,010502 geochemistry & geophysics ,01 natural sciences ,Microbiology ,lcsh:Microbiology ,chemistry.chemical_compound ,highly reactive iron ,Sulfate ,Original Research ,0105 earth and related environmental sciences ,chemistry.chemical_classification ,Gulf of Aqaba ,Sulfur cycle ,Red Sea ,Sulfur ,aeolian dust deposition ,sulfide oxidation intermediates ,chemistry ,13. Climate action ,Environmental chemistry ,manganese ,engineering ,Environmental science ,Aeolian processes ,Pyrite ,cryptic sulfur cycle - Abstract
The Gulf of Aqaba is an oligotrophic marine system with oxygen-rich water column and organic carbon-poor sediments (≤0.6% at sites that are not influenced by anthropogenic impact). Aeolian dust deposition from the Arabian, Sinai, and Sahara Deserts is an important source of sediment, especially at the deep-water sites of the Gulf, which are less affected by sediment transport from the Arava Desert during seasonal flash floods. Microbial sulfate reduction in sediments is inferred from the presence of pyrite (although at relatively low concentrations), the presence of sulfide oxidation intermediates, and by the sulfur isotopic composition of sulfate and solid-phase sulfides. Saharan dust is characterized by high amounts of iron minerals such as hematite and goethite. We demonstrated, that the resulting high sedimentary content of reactive iron(III) (hydr)oxides, originating from this aeolian dry deposition of desert dust, leads to fast re-oxidation of hydrogen sulfide produced during microbial sulfate reduction and limits preservation of reduced sulfur in the form of pyrite. We conclude that at these sites the sedimentary sulfur cycle may be defined as cryptic.
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- 2017
26. Sulfidization of lacustrine glacial clay upon Holocene marine transgression (Arkona Basin, Baltic Sea)
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Bo Barker Jørgensen, Lars Holmkvist, Volker Brüchert, Timothy G. Ferdelman, and Alexey Kamyshny
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chemistry.chemical_classification ,Greigite ,Sulfide ,engineering.material ,Diagenesis ,chemistry.chemical_compound ,Oceanography ,chemistry ,Geochemistry and Petrology ,Deglaciation ,engineering ,Pyrite ,Sulfate ,Geology ,Holocene ,Marine transgression - Abstract
Towards the end of the last deglaciation more than 13,500 years ago the southern Baltic Sea was a freshwater lake, the Baltic Ice Lake, for several thousand years during which iron-rich, organic-poor clay was deposited. The modern brackish-marine stage started about 8600 years ago with the deposition of organic-rich mud, which is today characterized by high rates of sulfate reduction and high concentrations of free sulfide. We studied the iron–sulfur diagenesis in gravity cores from the Arkona Basin, SW Baltic Sea, to track the progressing sulfidization front in the buried Ice Lake sediment. The geochemical zonation was unusual as the sulfate concentration dropped steeply by two thirds below which it increased again due to a deep sulfate reservoir. The reservoir had been established during the early Holocene marine period as sulfate and other seawater ions diffused down into the lake sediment for several thousand years. Sulfur isotope analyses confirmed its origin as seawater sulfate, while its oxygen isotope composition indicated a microbially catalyzed equilibration with ambient interstitial water, decoupled from net sulfate reduction. Today, hydrogen sulfide diffuses from the marine mud down into the lake sediment where a black band with high magnetic susceptibility and high iron monosulfide, greigite and elemental sulfur content shows progressing sulfidization of the large pool of solid-phase reactive iron. Dissolved iron from the deep Ice Lake sediment diffuses up to the sulfide front and provides a small supplement to the solid Fe(III) pool as a sulfide sink. Pyrite formation at the sulfidization front may involve surface-bound zero-valent sulfur while, above the front, polysulfides are in equilibrium with the system hydrogen sulfide – polysulfide – rhombic sulfur and may not be important for further pyrite formation. The Holocene iron–sulfur diagenesis observed in the Arkona Basin represents an important transitional state for post-glacial transgressions with organic-rich marine sediment overlying lacustrine clay, such as in other areas of the Baltic Sea or in the Black Sea.
- Published
- 2014
27. Microbial consumption of zero-valence sulfur in marine benthic habitats
- Author
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Alexey Kamyshny, Marc Mußmann, Stefan Dyksma, and Petra Pjevac
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Epsilonproteobacteria ,biology ,Ecology ,fungi ,chemistry.chemical_element ,Sulfur cycle ,biology.organism_classification ,Deltaproteobacteria ,Microbiology ,Sulfur ,Anoxic waters ,chemistry ,Sulfurimonas ,Desulfuromonadales ,Ecology, Evolution, Behavior and Systematics ,Desulfobulbaceae - Abstract
Zero-valence sulfur (S°) is a central intermediate in the marine sulfur cycle and forms conspicuous accumulations at sediment surfaces, hydrothermal vents and in oxygen minimum zones. Diverse microorganisms can utilize S°, but those consuming S° in the environment are largely unknown. We identified possible key players in S° turnover on native or introduced S° in benthic coastal and deep-sea habitats using the 16S ribosomal RNA approach, (in situ) growth experiments and activity measurements. In all habitats, the epsilonproteobacterial Sulfurimonas/Sulfurovum group accounted for a substantial fraction of the microbial community. Deltaproteobacterial Desulfobulbaceae and Desulfuromonadales were also frequently detected, indicating S° disproportionation and S° respiration under anoxic conditions. Sulfate production from S° particles colonized in situ with Sulfurimonas/Sulfurovum suggested that this group oxidized S°. We also show that the type strain Sulfurimonas denitrificans is able to access cyclooctasulfur (S₈), a metabolic feature not yet demonstrated for sulfur oxidizers. The ability to oxidize S°, in particular S8 , likely facilitates niche partitioning among sulfur oxidizers in habitats with intense microbial sulfur cycling such as sulfidic sediment surfaces. Our results underscore the previously overlooked but central role of Sulfurimonas/Sulfurovum group for conversion of free S° at the seafloor surface.
- Published
- 2014
28. Correction to: Diurnal variations in sulfur transformations at the chemocline of a stratified freshwater lake
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Alexey Kamyshny, Khoren Avetisyan, Alyssa Findlay, and Werner Eckert
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010504 meteorology & atmospheric sciences ,Sampling (statistics) ,chemistry.chemical_element ,04 agricultural and veterinary sciences ,Chemocline ,01 natural sciences ,Sulfur ,Oceanography ,chemistry ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental Chemistry ,Environmental science ,Ecosystem ,Biogeosciences ,0105 earth and related environmental sciences ,Earth-Surface Processes ,Water Science and Technology - Abstract
In the initial online version of the article, the sampling station location “F” was missing in Fig. 1. The original article has been corrected.
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- 2019
29. Sources and transformations of iron in the sediments of the Gulf of Aqaba (Red Sea)
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Barak Blonder, Valeria Boyko, and Alexey Kamyshny
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0106 biological sciences ,Shore ,geography ,geography.geographical_feature_category ,010504 meteorology & atmospheric sciences ,010604 marine biology & hydrobiology ,Geochemistry ,General Chemistry ,Oceanography ,01 natural sciences ,Anoxic waters ,Deposition (geology) ,Redox gradient ,Water column ,Environmental Chemistry ,Environmental science ,Aeolian processes ,Sedimentary rock ,Sediment transport ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
The Gulf of Aqaba is an oligotrophic marine system with an oxygen-rich water column. Aeolian dust from the Arabian, Sinai, and Sahara deserts is an important source of sedimentary material to the gulf, especially at 700 m water depth. The head of the gulf is affected by sediment transport from the Arava desert during winter flash floods. In this work, we have studied the speciation of iron in the dust, dry creek sediments and sediments of the Gulf of Aqaba at various water depths in order to understand sources and transformations of iron. Two sources of iron, dust and flash floods transported material, were found to possess distinct geochemical signatures: dust was found to be enriched in total and highly reactive iron relative to the sediments in creek beds. Combination of these two sources leads to an increase of highly reactive iron in sediments with water depth. This increase, in turn, results in formation of a lateral redox gradient with sulfidic pore-waters near the shore, and ferruginous-manganous pore-waters and cryptic sulfur cycling at the deeper water sites. Another result of dry aeolian deposition of desert dust to the sediments of the Gulf of Aqaba, overlaid by deep well‑oxygenated waters, is anomalously high ratios of highly reactive to total iron, which have been proposed to be diagnostic for anoxic, iron-rich water columns, when applied as a paleoproxy.
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- 2019
30. Kinetics and mechanism of the abiotic decomposition of dimethyl polysulfides with three, four and five sulfur atoms under dark, oxic conditions
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Alon Amrani, Tamir Buchshtav, Alexey Kamyshny, and Ward Said-Ahmad
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Aqueous solution ,Order of reaction ,Inorganic chemistry ,chemistry.chemical_element ,Context (language use) ,010501 environmental sciences ,01 natural sciences ,Sulfur ,Decomposition ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Chemistry (miscellaneous) ,Environmental Chemistry ,Dimethyl disulfide ,Dimethyl trisulfide ,Chemical decomposition ,0105 earth and related environmental sciences - Abstract
Environmental context Dimethyl polysulfides are malodorous compounds formed from decomposing algal matter. The decomposition of dimethylpolysulfides with 3–5 sulfur atoms was studied in aqueous solution under dark, oxygenated conditions and compared with observations of natural systems. The half-lives of dimethyl tri- and tetrasulfides are very long (176–100 000 years), while the half-life of dimethyl pentasulfide (
- Published
- 2019
31. Kinetics and mechanism of abiotic decomposition of malodorous dimethyl disulfide under dark, oxic conditions
- Author
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Alon Amrani, Tamir Buchshtav, and Alexey Kamyshny
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chemistry.chemical_classification ,Aqueous solution ,Kinetics ,Context (language use) ,010501 environmental sciences ,Photochemistry ,01 natural sciences ,Decomposition ,chemistry.chemical_compound ,chemistry ,Tap water ,Geochemistry and Petrology ,Chemistry (miscellaneous) ,Environmental Chemistry ,Organic matter ,Dimethyl disulfide ,Chemical decomposition ,0105 earth and related environmental sciences - Abstract
Environmental contextDimethyl disulfide, a malodorous product of decomposing organic matter, can severely compromise the quality of drinking water. We studied the abiotic decomposition of dimethyl disulfide in aqueous solutions under dark, oxygenated conditions and found that the half-life varied from thousands to hundreds of thousands of years. The results indicate that in natural aquatic systems the decomposition of dimethyl disulfide is governed by other chemical, photochemical and microbial processes. AbstractThe presence of malodorous dimethyl polysulfides (DMPSs) has been documented in limnic systems as well as in tap water distribution systems. These compounds compromise the quality of drinking water. In this work, we studied kinetics and mechanisms of the decomposition reactions of the most abundant and stable DMPS, dimethyl disulfide (DMDS), in aqueous solutions in the presence of oxygen and absence of light. It was found that DMDS reacts with a hydroxyl ion and its decomposition leads to the formation of methyl mercaptan and other products. The decomposition reaction is of the first order with respect to both the concentration of DMDS and the activity of the hydroxyl ion, with an activation energy of 90±8kJmol−1. The half-life of DMDS under abiotic, dark, oxic conditions was observed to vary from thousands to hundreds of thousands of years depending on the pH and temperature. These results indicate that DMDS is decomposed by other chemical, photochemical and microbially-mediated pathways.
- Published
- 2019
32. Quadruple sulfur isotope constraints on the origin and cycling of volatile organic sulfur compounds in a stratified sulfidic lake
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Yue Li, Harry Oduro, James Farquhar, Aubrey L. Zerkle, and Alexey Kamyshny
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Biogeochemical cycle ,Chemistry ,Stable isotope ratio ,Inorganic chemistry ,chemistry.chemical_element ,Plankton ,Dimethylsulfoniopropionate ,Anoxic waters ,Sulfur ,chemistry.chemical_compound ,Water column ,Geochemistry and Petrology ,Environmental chemistry ,Sulfate - Abstract
We have quantified the major forms of volatile organic sulfur compounds (VOSCs) distributed in the water column ofstratified freshwater Fayetteville Green Lake (FGL), to evaluate the biogeochemical pathways involved in their production.The lake’s anoxic deep waters contain high concentrations of sulfate (12–16 mmol L 1 ) and sulfide (0.12 lmol L 1 to1.5 mmol L 1 ) with relatively low VOSC concentrations, ranging from 0.1 nmol L to 2.8 lmol L 1 . Sulfur isotope measure-ments of combined volatile organic sulfur compounds demonstrate that VOSC species are formed primarily from reducedsulfur (H 2 S/HS ) and zero-valent sulfur (ZVS), with little input from sulfate. Thedata support a role of a combination ofbiological and abiotic processes in formation of carbon–sulfur bonds between reactive sulfur species and methyl groups oflignin components. These processes are responsible for very fast turnover of VOSC species, maintaining their low levels inFGL. No dimethylsulfoniopropionate (DMSP) was detected by Electrospray Ionization Mass Spectrometry (ESI-MS) inthe lake water column or in planktonic extracts. These observations indicate a pathway distinct from oceanic and coastal mar-ine environments, where dimethylsulfide (DMS) and other VOSC species are principally produced via the breakdown ofDMSP by plankton species. 2013 Elsevier Ltd. All rights reserved.1. INTRODUCTIONThe use of stable isotopes to understand the biogeo-chemical cycling of sulfur in oceanic (Rees et al., 1978;Jorgensen et al., 2004; Bo¨ttcher et al., 2006), freshwater(Fry, 1986; Canfield et al., 2010; Zerkle et al., 2010), andterrestrial systems (Goldhaber and Kaplan, 1980; Habichtand Canfield, 2001) has focused mostly on the dynamicsof inorganic sulfate, sulfide and their intermediate species.Few studies (e.g., Amrani et al., 2009; Oduro et al., 2011)have examined organic sulfur compounds, such as dimeth-ylsulfide (DMS; CH
- Published
- 2013
33. Intermediate sulfur oxidation state compounds in the euxinic surface sediments of the Dvurechenskii mud volcano (Black Sea)
- Author
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Alexey Kamyshny, Anna Lichtschlag, Dirk deBeer, and Timothy G. Ferdelman
- Subjects
Thiosulfate ,chemistry.chemical_classification ,Sulfide ,Hydrogen sulfide ,Inorganic chemistry ,chemistry.chemical_element ,Sulfur ,Anoxic waters ,Cold seep ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Polysulfide ,Geology ,Mud volcano - Abstract
The deep Black Sea is known to be depleted in electron-acceptors for sulfide oxidation. This study on depth distributions of sulfur species (S(II), S(0), S n 2 - , S 2 O 3 2 - , SO 3 2 - , SO 4 2 - ) in the Dvurechenskii mud volcano, a cold seep situated in the permanently anoxic eastern Black Sea basin (Sorokin Trough, 2060 m water depth), showed remarkable concentrations of sulfide oxidation products. Sulfite concentrations of up to 11 μmol L−1, thiosulfate concentrations of up to 22 μmol L−1, zero-valent sulfur concentrations of up to 150 μmol L−1 and up to five polysulfide species were measured in the upper 20 cm of the sediment. Electron-acceptors found to be available in the Dvurechenskii mud volcano (DMV) for the oxidation of hydrogen sulfide to sulfide oxidation intermediates are iron-minerals, and probably also reactive manganese phases. Up to 60 μmol g−1 of reactive iron-minerals and up to 170 μmol L−1 dissolved iron was present in the central summit with the highest fluid upflow and fresh mud outflow. Thus, the source for the oxidative power in the DMV are reactive iron phases extruded with the mud from an ancient source in the deeply buried sediments, leading to the formation of various sulfur intermediates in comparably high concentrations. Another possible source of sulfide oxidation intermediates in DMV sediments could be the formation of zero-valent sulfur by sulfate dependent anaerobic microbial oxidation of methane followed by disproportionation of zero-valent sulfur. Sulfide oxidation intermediates, which are produced by these processes, do not reach thermodynamic equilibrium with rhombic sulfur, especially close to the active center of the DMV due to a short equilibration time. Thus, mud volcano sediments, such as in the DMV, can provide oxidizing niches even in a highly reduced environment like the abyssal part of the Black Sea.
- Published
- 2013
34. Hydrogen Cyanide Accumulation and Transformations in Non-polluted Salt Marsh Sediments
- Author
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Alexey Kamyshny, Harry Oduro, Zahra F. Mansaray, and James Farquhar
- Subjects
chemistry.chemical_classification ,geography ,geography.geographical_feature_category ,Thiocyanate ,biology ,Sulfide ,Aquatic ecosystem ,Cyanide ,Inorganic chemistry ,Hydrogen cyanide ,Spartina alterniflora ,biology.organism_classification ,chemistry.chemical_compound ,Geophysics ,chemistry ,Geochemistry and Petrology ,Salt marsh ,Sedimentary organic matter - Abstract
While cyanide is known to be produced by many organisms, including plants, bacteria, algae, fungi and some animals, it is generally thought that high levels of cyanide in aquatic systems require anthropogenic sources. Here, we report accumulation of relatively high levels of cyanide in non-polluted salt marsh sediments (up to 230 μmol kg−1). Concentrations of free cyanide up to 1.92 μmol L−1, which are toxic to aquatic life, were detected in the pore-waters. Concentration of total (free and complexed) cyanide in the pore-waters was up to 6.94 μmol L−1. Free cyanide, which is released to the marsh sediments, is attributed to processes associated with decomposition of cord grass, Spartina alterniflora, roots and possibly from other sources. This cyanide is rapidly complexed with iron and adsorbed on sedimentary organic matter. The ultimate cyanide sink is, however, associated with formation of thiocyanate by reaction with products of sulfide oxidation by Fe(III) minerals, especially polysulfides. The formation of thiocyanate by this pathway detoxifies two poisonous compounds, polysulfides and hydrogen cyanide, preventing release of free hydrogen cyanide from salt marsh sediments into overlying water or air.
- Published
- 2012
35. Biogeochemical sulfur cycling in the water column of a shallow stratified sea-water lake: Speciation and quadruple sulfur isotope composition
- Author
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Irena Ciglenečki, James Farquhar, Zahra F. Mansaray, Alexey Kamyshny, Elvira Bura-Nakić, Timothy G. Ferdelman, and Aubrey L. Zerkle
- Subjects
chemistry.chemical_classification ,Sulfide ,Inorganic chemistry ,chemistry.chemical_element ,Sulfur cycle ,General Chemistry ,Oceanography ,Chemocline ,Sulfur ,chemistry.chemical_compound ,δ34S ,Water column ,chemistry ,Environmental Chemistry ,Sulfate-reducing bacteria ,Sulfate ,Lake Rogoznica ,Stratified lake ,Multiple sulfur isotopes ,Microbial sulfate reduction ,Phototrophic sulfide oxidation ,Zero-valent sulfur ,Thiocyanate ,Water Science and Technology - Abstract
Concentrations of sulfate, sulfide and intermediate sulfur species as well as quadruple sulfur isotope compositions of sulfate, sulfide and zero-valent sulfur (ZVS) were analyzed in the water column of Lake Rogoznica (Croatia), a stratified marine euxinic lake. The chemocline in the lake, which was located at 8.5–9.5 m depth, supports a dense population of purple phototrophic sulfide oxidizing bacteria from the genus Chromatium. The highest ZVS (5.42 μmol L−1) and sulfite (1.13 μmol L−1) concentrations were detected at the chemocline. Thiocyanate concentrations up to 288 nmol L−1 were detected near the bottom of the lake. The thiocyanate profile suggests that it diffuses up from the sediment, where it may be produced by the reaction of cyanide with sulfide oxidation intermediates. Multiple sulfur isotope fractionations between sulfate and sulfide were consistent with a model finding that disproportionation is not a dominant process below the chemocline. Microbial sulfide oxidation was found to be the dominant process of the reoxidative part of the sulfur cycle. Despite the absence of a clear signal for sulfur disproportionation in multiple sulfur isotope values, δ34S fractionations between sulfate and sulfide were in the range of 43.8–45.2‰, is relatively large in comparison to most laboratory culturing studies. Our results suggest that such fractionation is achieved by microbial sulfate reduction alone, which is in agreement with metabolic models and recent laboratory studies.
- Published
- 2011
36. Multiple sulfur isotope analysis of volatile organic sulfur compounds and their sulfonium precursors in coastal marine environments
- Author
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Alexey Kamyshny, James Farquhar, Weifu Guo, and Harry Oduro
- Subjects
inorganic chemicals ,chemistry.chemical_classification ,Carbon disulfide ,Sulfide ,Mineralogy ,chemistry.chemical_element ,Sulfur cycle ,Methanethiol ,General Chemistry ,Oceanography ,Sulfur ,chemistry.chemical_compound ,δ34S ,chemistry ,Environmental chemistry ,Environmental Chemistry ,Hydrodesulfurization ,Water Science and Technology ,Isotope analysis - Abstract
Volatile methylated sulfur compounds emitted from terrestrial and aquatic ecosystems play a significant role in the global sulfur cycle, yet no satisfactory methods are available to trace their source and transformation in natural systems. Here we present a method for quantification and multiple sulfur isotopic analysis of a variety of volatile sulfur species as well as their natural precursors via hydrodesulfurization with a Raney nickel catalyst. The detection limit of this method for methanethiol (MT), dimethylsulfide (DMS), dimethyldisulfide (DMDS), and carbon disulfide (CS2) is 0.2 mg of sulfur per sample. Average recovery of ~ 95% was attained for samples containing more than 1.3 mg of these sulfur compounds. Triplicate to quadruplicate sulfur isotopic analyses of reduced standard materials yield average standard deviations of 0.3‰, 0.02‰, and 0.1‰, respectively, for δ34S, ∆33S, and ∆36S. The method developed here was used for determination of sulfur isotopic compositions of volatile organic sulfur compounds (VOSCs) and their precursor dimethylsulfoniopropionoate (DMSP) in sediment cores and a C4 plant Spartina alterniflora collected from the Delaware Great Marsh. Application of the method to these natural samples indicates that the S-isotope compositions of VOSCs and DMSP-S are similar to, but slightly 34S-depleted (~0.6–0.9), relative to porewater sulfide. These compounds are 34S-enriched (~ 1.7–2.0‰) relative to the compositions of the coexisting sulfide. Both suggest a relationship between source sulfide and these organic sulfur compounds.
- Published
- 2011
37. Sulfur cycling in a stratified euxinic lake with moderately high sulfate: Constraints from quadruple S isotopes
- Author
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Michael A. Arthur, Aubrey L. Zerkle, Lee R. Kump, James Farquhar, Alexey Kamyshny, and Harry Oduro
- Subjects
chemistry.chemical_classification ,education.field_of_study ,Sulfide ,Inorganic chemistry ,Population ,chemistry.chemical_element ,Chemocline ,Sulfur ,chemistry.chemical_compound ,δ34S ,Water column ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Organic matter ,Sulfate ,education - Abstract
We present a 3-year study of concentrations and sulfur isotope values (δ34S, Δ33S, and Δ36S) of sulfur compounds in the water column of Fayetteville Green Lake (NY, USA), a stratified (meromictic) euxinic lake with moderately high sulfate concentrations (12–16 mM). We utilize our results along with numerical models (including transport within the lake) to identify and quantify the major biological and abiotic processes contributing to sulfur cycling in the system. The isotope values of sulfide and zero-valent sulfur across the redox-interface (chemocline) change seasonally in response to changes in sulfide oxidation processes. In the fall, sulfide oxidation occurs primarily via abiotic reaction with oxygen, as reflected by an increase in sulfide δ34S at the redox interface. Interestingly, S isotope values for zero-valent sulfur sampled at this time still reflect production and recycling by phototrophic S-oxidation. In the spring, sulfide S isotope values suggest an increased input from phototrophic oxidation, consistent with a more pronounced phototroph population at the chemocline. This trend is associated with smaller fractionations between sulfide and zero-valent sulfur, suggesting a metabolic rate control on fractionation similar to that for sulfate reduction. Comparison of our data with previous studies indicates that the S isotope values of sulfate and sulfide in the deep waters are remarkably stable over long periods of time, with consistently large fractionations of up to 58‰ in δ34S. Models of the δ34S and Δ33S trends in the deep waters (considering mass transport via diffusion and advection along with biological processes) require that these fractionations are a consequence of sulfur compound disproportionation at and below the redox interface in addition to large fractionations during sulfate reduction. The large fractionations during sulfate reduction appear to be a consequence of the high sulfate concentrations and the distribution of organic matter in the water column. The occurrence of disproportionation in the lake is supported by profiles of intermediate sulfur compounds and by lake microbiology, but is not evident from the δ34S trends alone. These results illustrate the utility of including minor S isotopes in sulfur isotope studies to unravel complex sulfur cycling in natural systems.
- Published
- 2010
38. Dynamics of zero-valent sulfur species including polysulfides at seep sites on intertidal sand flats (Wadden Sea, North Sea)
- Author
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Alexey Kamyshny and Timothy G. Ferdelman
- Subjects
chemistry.chemical_classification ,Sulfide ,chemistry.chemical_element ,Mineralogy ,Sediment ,General Chemistry ,Oceanography ,Sulfur ,Anoxic waters ,chemistry.chemical_compound ,chemistry ,Environmental chemistry ,Environmental Chemistry ,Seawater ,Particle size ,Sulfate ,Polysulfide ,Water Science and Technology - Abstract
Zero-valent sulfur species dynamics in tidal flat pools of Wadden Sea (North Sea) were studied. Concentrations of solid sulfur, colloidal sulfur of different particle sizes and distribution of inorganic polysulfide species were detected near the bottom of different pools as a function of time after detachment of the pool from sea. Concentrations of these species were detected also in the incubated sediment cores taken from the same site with the pumping of anoxic seawater, anoxic seawater spiked with sulfide and anoxic seawater spiked with lactate. Sulfide concentration in the pool increased during the first 2 h of pool detachment from the sea to a maximum of 273 µM. Polysulfides were present at the beginning of the detachment of the pool and higher concentrations of elemental sulfur and polysulfides lead to more rapid coagulation and precipitation of dispersed solid sulfur. The process of the formation of zero-valent sulfur began with the formation of polysulfides and colloidal sulfur with a particle size less than 5 μm. Further coagulation led to an increase in the amount of colloidal sulfur with the particle size more than 5 μm followed by crystallization of solid sulfur particles. Maximum concentration of colloidal sulfur detected in the pools was 73 µM and that of solid sulfur was 25 µM. Maximum concentration of the sum of all polysulfide species measured was 5.9 µM, which corresponded to 23.1 µM of detected polysulfide sulfur or to 27.7 µM of polysulfide sulfur taking into account the calculated concentrations of species with concentration under detection limit. Polythionates were not detected. Levels of total zero-valent sulfur usually reached the value of 40 µM, but can be even higher than 100 µM. This depended on the overall concentration of sulfide. In the tidal pools, polysulfide chain lengths were short and the polysulfide system was found not to be in equilibrium with solid or colloidal sulfur at any time of pool detachment from sea. Flow-through incubation experiments, however, exhibited polysulfide in equilibrium with respect to rhombic sulfur. No difference in the polysulfide speciation was observed in experiments where sulfide was artificially added and sulfide was produced through enhanced bacterial sulfate reduction. The differences were attributed to the kinetics and to competing oxidation processes present in the exposed Wadden Sea tidal pools as compared to the longer running and more restricted incubation experiments.
- Published
- 2010
39. Solubility of cyclooctasulfur in pure water and sea water at different temperatures
- Author
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Alexey Kamyshny
- Subjects
chemistry.chemical_compound ,Aqueous solution ,chemistry ,Thiocyanate ,Geochemistry and Petrology ,Inorganic chemistry ,Potassium cyanide ,chemistry.chemical_element ,Seawater ,Water quality ,Solubility ,Sulfur ,Ion - Abstract
The solubility of cyclooctasulfur in water and sea water at various temperatures in the range between 4 and 80 °C was determined. Cyclooctasulfur in equilibrium with rhombic sulfur reacted with hot acidic aqueous potassium cyanide to form thiocyanate anion which was measured by anion chromatography. Sulfur solubility in pure water was found to increase with temperature by more than 78 times: from 6.1 nM S 8 at 4 °C to 478 nM S 8 at 80 °C. The following thermodynamic values for solubilisation of S 8 in water were calculated from the experimental data: K° = 3.01 ± 1.04 × 10 −8 , Δ G r ° = 42.93 ± 0.73 kJ mol −1 , Δ H r ° = 47.4 ± 3.6 kJmol −1 , Δ S r ° = 15.0 ± 11.7 J mol −1 K −1 ). Solubility of cyclooctasulfur in sea water was found to be 61 ± 13% of the solubility in pure water regardless of the temperature.
- Published
- 2009
40. Protocol for Quantitative Detection of Elemental Sulfur and Polysulfide Zero-Valent Sulfur Distribution in Natural Aquatic Samples
- Author
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Alexey Kamyshny, Timothy G. Ferdelman, and Clemens G. Borkenstein
- Subjects
inorganic chemicals ,Chloroform ,Stereochemistry ,Extraction (chemistry) ,Inorganic chemistry ,chemistry.chemical_element ,Geology ,Zinc ,Sulfur ,chemistry.chemical_compound ,Colloid ,chemistry ,Geochemistry and Petrology ,Seawater ,Polysulfide ,Methyl trifluoromethanesulfonate - Abstract
A HPLC-based protocol has been developed for the determination of zero-valent sulfur (ZVS) speciation, including solid, colloidal elemental sulfur and individual inorganic polysulfides in natural aquatic samples. The protocol includes four experimental procedures: (1) determination of polysulfide speciation by rapid single-phase derivatisation with methyl trifluoromethanesulfonate; (2) determination of the sum of polysulfide and colloidal sulfur by reaction with hydrogen cyanide (cyanolysis); (3) determination of total zero-valent sulfur by treatment with zinc chloride followed by extraction with chloroform; and (4) chromatographic determination of polythionates without sample pre-treatment. With proper sampling and preservation techniques in the field or on board ship, this combination of methods allowed the quantitative determination of: (a) individual polysulfide species; (b) dispersed colloidal sulfur; (c) dispersed solid elemental sulfur; and (d) tetra-, penta- and hexathionates. With minor modification, the method could be expanded to include other polythionates. Sixteen various wet chemical and liquid chromatographic methods were tested on nine synthetic reference samples (including solid elemental sulfur, colloidal elemental sulfur, inorganic polysulfides and polythionates) to establish the optimal protocol. The protocol was further evaluated by analysing the zero-valent sulfur content in microbially-produced sulfur and in sulfur from two natural samples of sulfide-rich seawater from tidal flats pools of the Wadden Sea (Germany).
- Published
- 2009
41. Improved cyanolysis protocol for detection of zero-valent sulfur in natural aquatic systems
- Author
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Alexey Kamyshny
- Subjects
Detection limit ,chemistry.chemical_compound ,Chromatography ,chemistry ,Thiocyanate ,Evaporation ,Potassium cyanide ,chemistry.chemical_element ,Ocean Engineering ,Fraction (chemistry) ,Seawater ,Ethylene glycol ,Sulfur - Abstract
We propose a novel protocol for detection of reactive zero-valent sulfur (ZVS) in natural aquatic samples including seawater. Reaction with hot potassium cyanide at slightly acidic conditions recovers ZVS from col- loidal fraction of particulate elemental sulfur, polysulfides (S n 2- ), and their protonated forms. Preconcentration by partial evaporation of the sample and separation of thiocyanate anions by high-performance liquid chro- matography on the C30 reverse phase column modified with poly(ethylene glycol) followed by spectrophoto- metric detection at 220 nm wavelength allows us to detect reactive ZVS with detection limit of 3 nmol L -1 for fresh water samples and 6 nmol L -1 for seawater samples. Storage at 4°C for 6 weeks does not change the con- centration of thiocyanate in the sample by more than 10%.
- Published
- 2009
42. Multiple sulfur isotopes fractionations associated with abiotic sulfur transformations in Yellowstone National Park geothermal springs
- Author
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James Farquhar, Zahra F. Mansaray, Gregory K. Druschel, and Alexey Kamyshny
- Subjects
chemistry.chemical_classification ,Thiosulfate ,Hydrothermal springs ,Sulfide ,Hydrogen sulfide ,Sulfur cycle ,Mineralogy ,chemistry.chemical_element ,Sulfur disproportionation ,Sulfur ,6. Clean water ,chemistry.chemical_compound ,Isotope geochemistry ,δ34S ,Isotope fractionation ,chemistry ,13. Climate action ,Geochemistry and Petrology ,Environmental chemistry ,Sulfide oxidation ,Multiple sulfur isotopes ,Yellowstone national park ,Sulfate ,Research Article - Abstract
Background: The paper presents a quantification of main (hydrogen sulfide and sulfate), as well as of intermediate sulfur species (zero-valent sulfur (ZVS), thiosulfate, sulfite, thiocyanate) in the Yellowstone National Park (YNP) hydrothermal springs and pools. We combined these measurements with the measurements of quadruple sulfur isotope composition of sulfate, hydrogen sulfide and zero-valent sulfur. The main goal of this research is to understand multiple sulfur isotope fractionation in the system, which is dominated by complex, mostly abiotic, sulfur cycling. Results: Water samples from six springs and pools in the Yellowstone National Park were characterized by pH, chloride to sulfate ratios, sulfide and intermediate sulfur species concentrations. Concentrations of sulfate in pools indicate either oxidation of sulfide by mixing of deep parent water with shallow oxic water, or surface oxidation of sulfide with atmospheric oxygen. Thiosulfate concentrations are low (
- Published
- 2014
43. An improved pyrite pretreatment protocol for kinetic and isotopic studies
- Author
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Itay Halevy, Natella Mirzoyan, and Alexey Kamyshny
- Subjects
Grain morphology ,Elemental sulfur ,Inorganic chemistry ,Methodology ,Sulfur cycle ,chemistry.chemical_element ,Pyrite oxidation ,engineering.material ,Sulfur isotopes ,Sulfur ,Sulfide minerals ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Specific surface area ,Particle-size distribution ,engineering ,Particle ,Pyrite ,Dissolution ,Etch pits - Abstract
Background Pyrite is one of the most abundant and widespread of the sulfide minerals with a central role in biogeochemical cycles of iron and sulfur. Due to its diverse roles in the natural and anthropogenic sulfur cycle, pyrite has been extensively studied in various experimental investigations of the kinetics of its dissolution and oxidation, the isotopic fractionations associated with these reactions, the microbiological processes involved, and the effects of pyrite on human health. Elemental sulfur (S0) is a common product of incomplete pyrite oxidation. Preexisting S0 impurities as unaccounted reaction products are a source of experimental uncertainty, as are adhered fine grains of pyrite and its oxidation products. Removal of these impurities is, therefore, desirable. A robust standardized pretreatment protocol for removal of fine particles and oxidation impurities from pyrite is lacking. Here we describe a protocol for S0 and fine particle removal from the surface of pyrite by rinsing in acid followed by repeated ultrasonication with warm acetone. Results Our data demonstrate the presence of large fractions of S0 on untreated pyrite particle surfaces, of which only up to 60% was removed by a commonly used pretreatment method described by Moses et al. (GCA 51:1561-1571, 1987). In comparison, after pretreatment by the protocol proposed here, approximately 98% S0 removal efficiency was achieved. Additionally, the new procedure was more efficient at removal of fine particles of adhered pyrite and its oxidation products and did not appear to affect the particle size distribution, the specific surface area, or the properties of grain surfaces. Conclusions The suggested pyrite pretreatment protocol is more efficient in removal of impurities from pyrite grains, and provides multiple advantages for both kinetic and isotopic investigations of pyrite transformations under various environmental conditions. Graphical Abstract Pyrite pretreatment by a commonly used technique (Method I) and a novel protocol (Method II)
- Published
- 2013
44. Microbial consumption of zero-valence sulfur in marine benthic habitats
- Author
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Petra, Pjevac, Alexey, Kamyshny, Stefan, Dyksma, and Marc, Mussmann
- Subjects
Deltaproteobacteria ,Geologic Sediments ,Hydrothermal Vents ,Sulfates ,Biofilms ,RNA, Ribosomal, 16S ,Epsilonproteobacteria ,Seawater ,Ecosystem ,Sulfur - Abstract
Zero-valence sulfur (S°) is a central intermediate in the marine sulfur cycle and forms conspicuous accumulations at sediment surfaces, hydrothermal vents and in oxygen minimum zones. Diverse microorganisms can utilize S°, but those consuming S° in the environment are largely unknown. We identified possible key players in S° turnover on native or introduced S° in benthic coastal and deep-sea habitats using the 16S ribosomal RNA approach, (in situ) growth experiments and activity measurements. In all habitats, the epsilonproteobacterial Sulfurimonas/Sulfurovum group accounted for a substantial fraction of the microbial community. Deltaproteobacterial Desulfobulbaceae and Desulfuromonadales were also frequently detected, indicating S° disproportionation and S° respiration under anoxic conditions. Sulfate production from S° particles colonized in situ with Sulfurimonas/Sulfurovum suggested that this group oxidized S°. We also show that the type strain Sulfurimonas denitrificans is able to access cyclooctasulfur (S₈), a metabolic feature not yet demonstrated for sulfur oxidizers. The ability to oxidize S°, in particular S8 , likely facilitates niche partitioning among sulfur oxidizers in habitats with intense microbial sulfur cycling such as sulfidic sediment surfaces. Our results underscore the previously overlooked but central role of Sulfurimonas/Sulfurovum group for conversion of free S° at the seafloor surface.
- Published
- 2013
45. Pathways for Neoarchean pyrite formation constrained by mass-independent sulfur isotopes
- Author
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Alexey Kamyshny, David T. Adams, John B. Cliff, James Farquhar, Brian Harms, Mark Claire, Aubrey L. Zerkle, and Simon W. Poulton
- Subjects
Geological Phenomena ,Multidisciplinary ,Isotope ,Hydrogen sulfide ,Iron ,Geochemistry ,chemistry.chemical_element ,engineering.material ,Isotopes of sulfur ,Sulfides ,Sulfur ,chemistry.chemical_compound ,South Africa ,δ34S ,chemistry ,Chemistry and Applications in Nature of Mass Independent Isotope Effects Special Feature ,Sulfur Isotopes ,engineering ,Sedimentary rock ,Pyrite ,Sulfate ,Geology ,History, Ancient ,Electron Probe Microanalysis - Abstract
It is generally thought that the sulfate reduction metabolism is ancient and would have been established well before the Neoarchean. It is puzzling, therefore, that the sulfur isotope record of the Neoarchean is characterized by a signal of atmospheric mass-independent chemistry rather than a strong overprint by sulfate reducers. Here, we present a study of the four sulfur isotopes obtained using secondary ion MS that seeks to reconcile a number of features seen in the Neoarchean sulfur isotope record. We suggest that Neoarchean ocean basins had two coexisting, significantly sized sulfur pools and that the pathways forming pyrite precursors played an important role in establishing how the isotopic characteristics of each of these pools was transferred to the sedimentary rock record. One of these pools is suggested to be a soluble (sulfate) pool, and the other pool (atmospherically derived elemental sulfur) is suggested to be largely insoluble and unreactive until it reacts with hydrogen sulfide. We suggest that the relative contributions of these pools to the formation of pyrite depend on both the accumulation of the insoluble pool and the rate of sulfide production in the pyrite-forming environments. We also suggest that the existence of a significant nonsulfate pool of reactive sulfur has masked isotopic evidence for the widespread activity of sulfate reducers in the rock record.
- Published
- 2013
46. Quantification of free and metal-complexed cyanide by tetrathionate derivatization
- Author
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Alexey Kamyshny, Harry Oduro, and James Farquhar
- Subjects
Tetrathionate ,Detection limit ,Chromatography ,Thiocyanate ,Health, Toxicology and Mutagenesis ,Cyanide ,Potassium ,Public Health, Environmental and Occupational Health ,Soil Science ,chemistry.chemical_element ,Pollution ,High-performance liquid chromatography ,Analytical Chemistry ,Metal ,chemistry.chemical_compound ,chemistry ,visual_art ,visual_art.visual_art_medium ,Environmental Chemistry ,Derivatization ,Waste Management and Disposal ,Water Science and Technology - Abstract
A sensitive and robust method for detection of free and metal-complexed cyanide in solutions is described. The method does not require a distillation step and is applicable for both low ionic strength and sea-water samples. The method is based on the reaction of cyanide with potassium tetrathionate followed by high-performance liquid chromatography (HPLC) separation and UV detection of formed thiocyanate. The detection limit of the method is 250 nmol L−1 cyanide (6.5 µg L−1 CN−) without a pre-concentration step. Storage for three days does not significantly change the results. The sum of free and weak metal-complexed cyanide can be measured by tetrathionate derivatization at a pH of 10. The sum of free, weak metal-complexed cyanide, iron(II) and iron(III)-complexed cyanides may be measured by tetrathionate derivatization at pH 4.4. Derivatization requires heating to 90°C for 20 min at pH = 10 and for 12 h at pH = 4.4. Weighted mean recoveries for free, iron(II), iron(III), nickel(II), silver(I), Cd(II) and Zn(II) complexed cyanide were in the range of 87 to 112% and weighted standard deviations were in the range of 1.7 to 10.0%. The method is not applicable for cyanide complexes of gold and cobalt. We illustrate an application of cyanide quantification using pore-waters from the Delaware Great Marsh.
- Published
- 2012
47. Sulfate reduction below the sulfate-methane transition in Black Sea sediments
- Author
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Alexey Kamyshny, Bo Barker Jørgensen, Christoph Vogt, Kyriakos Vamvakopoulos, Lars Holmkvist, and Timothy G. Ferdelman
- Subjects
Total organic carbon ,chemistry.chemical_classification ,Sediment ,chemistry.chemical_element ,Mineralogy ,Aquatic Science ,Oceanography ,Sulfur ,Anoxic waters ,Salinity ,chemistry.chemical_compound ,Mediterranean sea ,chemistry ,Environmental chemistry ,Organic matter ,Sulfate ,Geology - Abstract
A sudden increase in salinity about 7000 years ago caused a shift in the deposited sediments of the Black Sea from limnic to brackish-marine. Due to the development of an anoxic deep water basin and a relatively high sulfate concentration, organic matter is mineralized primarily through sulfate reduction in modern Black Sea sediments. Earlier studies showed that sulfate-reducing bacteria are abundant within the limnic sub-surface sediment in spite of extremely low concentrations of sulfate and organic carbon. A main objective of the present study was therefore to understand the depth distribution of sulfate reduction across the different sediment units, even deep below the sulfate–methane transition. Our study combined experimental measurements of sulfate reduction using 35 S radiotracer with analyses of sulfur and iron geochemistry in pore water and sediment. Potential sulfate reduction rates were measured with 35 S in sediment samples that were amended with sulfate and organic substrates and incubated in time-series up to 48 h. Sulfate reduction could thereby be detected and quantified at depths where concentrations of sulfate were otherwise too low to enable calculation of the rates. The results demonstrate that sulfate-reducing bacteria are active several meters below the sulfate–methane transition in Black Sea sediments. The cryptic sulfate reduction below the sulfate–methane transition may be driven by sulfate produced from re-oxidation of reduced sulfur species with oxidized iron minerals buried in the deep limnic sediment.
- Published
- 2011
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