81 results on '"Alessandro Sinigaglia"'
Search Results
2. West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers
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Lu Lu, Feifei Zhang, Bas B. Oude Munnink, Emmanuelle Munger, Reina S. Sikkema, Styliani Pappa, Katerina Tsioka, Alessandro Sinigaglia, Emanuela Dal Molin, Barbara B. Shih, Anne Günther, Anne Pohlmann, Ute Ziegler, Martin Beer, Rachel A. Taylor, Frederic Bartumeus, Mark Woolhouse, Frank M. Aarestrup, Luisa Barzon, Anna Papa, Samantha Lycett, and Marion P. G. Koopmans
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Published
- 2024
3. Detection of SARS-CoV-2 viral proteins and genomic sequences in human brainstem nuclei
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Aron Emmi, Stefania Rizzo, Luisa Barzon, Michele Sandre, Elisa Carturan, Alessandro Sinigaglia, Silvia Riccetti, Mila Della Barbera, Rafael Boscolo-Berto, Patrizia Cocco, Veronica Macchi, Angelo Antonini, Monica De Gaspari, Cristina Basso, Raffaele De Caro, and Andrea Porzionato
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Neurological manifestations are common in COVID-19, the disease caused by SARS-CoV-2. Despite reports of SARS-CoV-2 detection in the brain and cerebrospinal fluid of COVID-19 patients, it is still unclear whether the virus can infect the central nervous system, and which neuropathological alterations can be ascribed to viral tropism, rather than immune-mediated mechanisms. Here, we assess neuropathological alterations in 24 COVID-19 patients and 18 matched controls who died due to pneumonia/respiratory failure. Aside from a wide spectrum of neuropathological alterations, SARS-CoV-2-immunoreactive neurons were detected in the dorsal medulla and in the substantia nigra of five COVID-19 subjects. Viral RNA was also detected by real-time RT-PCR. Quantification of reactive microglia revealed an anatomically segregated pattern of inflammation within affected brainstem regions, and was higher when compared to controls. While the results of this study support the neuroinvasive potential of SARS-CoV-2 and characterize the role of brainstem inflammation in COVID-19, its potential implications for neurodegeneration, especially in Parkinson’s disease, require further investigations.
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- 2023
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4. A specific anti‐COVID‐19 BNT162b2 vaccine‐induced early innate immune signature positively correlates with the humoral protective response in healthy and multiple sclerosis vaccine recipients
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Martina Severa, Fabiana Rizzo, Alessandro Sinigaglia, Daniela Ricci, Marilena Paola Etna, Gaia Cola, Doriana Landi, Maria Chiara Buscarinu, Catia Valdarchi, Giovanni Ristori, Silvia Riccetti, Chiara Piubelli, Pierangela Palmerini, Antonio Rosato, Federico Gobbi, Stefano Balducci, Girolama Alessandra Marfia, Marco Salvetti, Luisa Barzon, and Eliana Marina Coccia
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humoral response ,innate immunity ,mRNA vaccine ,SARS‐CoV‐2 ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Objectives The very rapidly approved mRNA‐based vaccines against SARS‐CoV‐2 spike glycoprotein, including Pfizer‐BioNTech BNT162b2, are effective in protecting from severe coronavirus disease 2019 (COVID‐19) in immunocompetent population. However, establishing the duration and identifying correlates of vaccine‐induced protection will be crucial to optimise future immunisation strategies. Here, we studied in healthy vaccine recipients and people with multiple sclerosis (pwMS), undergoing different therapies, the regulation of innate immune response by mRNA vaccination in order to correlate it with the magnitude of vaccine‐induced protective humoral responses. Methods Healthy subjects (n = 20) and matched pwMS (n = 22) were longitudinally sampled before and after mRNA vaccination. Peripheral blood mononuclear cell (PBMC)‐associated type I and II interferon (IFN)‐inducible gene expression, serum innate cytokine/chemokine profile as well as binding and neutralising anti‐SARS‐COV‐2 antibodies (Abs) were measured. Results We identified an early immune module composed of the IFN‐inducible genes Mx1, OAS1 and IRF1, the serum cytokines IL‐15, IL‐6, TNF‐α and IFN‐γ and the chemokines IP‐10, MCP‐1 and MIG, induced 1 day post second and third BNT162b2 vaccine doses, strongly correlating with magnitude of humoral response to vaccination in healthy and MS vaccinees. Moreover, induction of the early immune module was dramatically affected in pwMS treated with fingolimod and ocrelizumab, both groups unable to induce a protective humoral response to COVID‐19 vaccine. Conclusion Overall, this study suggests that the vaccine‐induced early regulation of innate immunity is mediated by IFN signalling, impacts on the magnitude of adaptive responses and it might be indicative of vaccine‐induced humoral protection.
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- 2023
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5. Circulating microRNA signatures associated with disease severity and outcome in COVID-19 patients
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Alessandra Giannella, Silvia Riccetti, Alessandro Sinigaglia, Chiara Piubelli, Elisa Razzaboni, Piero Di Battista, Matteo Agostini, Emanuela Dal Molin, Riccardo Manganelli, Federico Gobbi, Giulio Ceolotto, and Luisa Barzon
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COVID-19 ,microRNA ,biomarkers ,innate immunity ,inflammation ,interferon ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundSARS-CoV-2 induces a spectrum of clinical conditions ranging from asymptomatic infection to life threatening severe disease. Host microRNAs have been involved in the cytokine storm driven by SARS-CoV-2 infection and proposed as candidate biomarkers for COVID-19.MethodsTo discover signatures of circulating miRNAs associated with COVID-19, disease severity and mortality, small RNA-sequencing was performed on serum samples collected from 89 COVID-19 patients (34 severe, 29 moderate, 26 mild) at hospital admission and from 45 healthy controls (HC). To search for possible sources of miRNAs, investigation of differentially expressed (DE) miRNAs in relevant human cell types in vitro.ResultsCOVID-19 patients showed upregulation of miRNAs associated with lung disease, vascular damage and inflammation and downregulation of miRNAs that inhibit pro-inflammatory cytokines and chemokines, angiogenesis, and stress response. Compared with mild/moderate disease, patients with severe COVID-19 had a miRNA signature indicating a profound impairment of innate and adaptive immune responses, inflammation, lung fibrosis and heart failure. A subset of the DE miRNAs predicted mortality. In particular, a combination of high serum miR-22-3p and miR-21-5p, which target antiviral response genes, and low miR-224-5p and miR-155-5p, targeting pro-inflammatory factors, discriminated severe from mild/moderate COVID-19 (AUROC 0.88, 95% CI 0.80-0.95, p
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- 2022
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6. Case Report: The Carotid Body in COVID-19: Histopathological and Virological Analyses of an Autopsy Case Series
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Andrea Porzionato, Aron Emmi, Martina Contran, Elena Stocco, Silvia Riccetti, Alessandro Sinigaglia, Veronica Macchi, Luisa Barzon, and Raffaele De Caro
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carotid body ,COVID-19 ,nervous system ,silent hypoxia ,peripheral arterial chemoreceptors ,chemosensitivity ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Various authors have hypothesized carotid body (CB) involvement in Coronavirus Disease 2019 (COVID-19), through direct invasion or indirect effects by systemic stimuli (‘cytokine storm’, angiotensin-converting enzyme [ACE]1/ACE2 imbalance). However, empirical evidence is limited or partial. Here, we present an integrated histopathological and virological analysis of CBs sampled at autopsy from four subjects (2 males and 2 females; age: >70 years old) who died of COVID-19. Histopathological, immunohistochemical and molecular investigation techniques were employed to characterize Severe Acute Respiratory Syndrome – Coronavirus 2 (SARS-CoV2) viral invasion and inflammatory reaction. SARS-CoV2 RNA was detected in the CBs of three cases through Real-Time Reverse Transcription Polymerase Chain Reaction (RT-PCR). In these cases, positive immunostaining for Nucleocapsid and Spike protein were also demonstrated, mainly at the level of large roundish cells consistent with type I cells, confirming direct CB invasion. In these cases, T lymphocytes showed focal aggregations in the CBs, suggestive of local inflammatory reaction. Blood congestion and microthrombosis were also found in one of the positive cases. Intriguingly, microthrombosis, blood congestion and microhaemorrages were also bilaterally detected in the CBs of the negative case, supporting the possibility of COVID-19 effects on the CB even in the absence of its direct invasion. SARS-CoV-2 direct invasion of the CB is confirmed through both immunohistochemistry and RT-PCR, with likely involvement of different cell types. We also reported histopathological findings which could be ascribed to local and/or systemic actions of SARS-CoV-2 and which could potentially affect chemoreception.
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- 2021
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7. Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infection.
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Martina Severa, Roberta A Diotti, Marilena P Etna, Fabiana Rizzo, Stefano Fiore, Daniela Ricci, Marco Iannetta, Alessandro Sinigaglia, Alessandra Lodi, Nicasio Mancini, Elena Criscuolo, Massimo Clementi, Massimo Andreoni, Stefano Balducci, Luisa Barzon, Paola Stefanelli, Nicola Clementi, and Eliana M Coccia
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
SARS-CoV-2 fine-tunes the interferon (IFN)-induced antiviral responses, which play a key role in preventing coronavirus disease 2019 (COVID-19) progression. Indeed, critically ill patients show an impaired type I IFN response accompanied by elevated inflammatory cytokine and chemokine levels, responsible for cell and tissue damage and associated multi-organ failure. Here, the early interaction between SARS-CoV-2 and immune cells was investigated by interrogating an in vitro human peripheral blood mononuclear cell (PBMC)-based experimental model. We found that, even in absence of a productive viral replication, the virus mediates a vigorous TLR7/8-dependent production of both type I and III IFNs and inflammatory cytokines and chemokines, known to contribute to the cytokine storm observed in COVID-19. Interestingly, we observed how virus-induced type I IFN secreted by PBMC enhances anti-viral response in infected lung epithelial cells, thus, inhibiting viral replication. This type I IFN was released by plasmacytoid dendritic cells (pDC) via an ACE-2-indipendent but Neuropilin-1-dependent mechanism. Viral sensing regulates pDC phenotype by inducing cell surface expression of PD-L1 marker, a feature of type I IFN producing cells. Coherently to what observed in vitro, asymptomatic SARS-CoV-2 infected subjects displayed a similar pDC phenotype associated to a very high serum type I IFN level and induction of anti-viral IFN-stimulated genes in PBMC. Conversely, hospitalized patients with severe COVID-19 display very low frequency of circulating pDC with an inflammatory phenotype and high levels of chemokines and pro-inflammatory cytokines in serum. This study further shed light on the early events resulting from the interaction between SARS-CoV-2 and immune cells occurring in vitro and confirmed ex vivo. These observations can improve our understanding on the contribution of pDC/type I IFN axis in the regulation of the anti-viral state in asymptomatic and severe COVID-19 patients.
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- 2021
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8. Hypopharyngeal Ulcers in COVID-19: Histopathological and Virological Analyses – A Case Report
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Andrea Porzionato, Elena Stocco, Aron Emmi, Martina Contran, Veronica Macchi, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon, and Raffaele De Caro
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COVID-19 ,gastrointestinal tract ,inflammation ,mucosal injury ,HSV ,histopathology ,Immunologic diseases. Allergy ,RC581-607 - Abstract
In coronavirus disease 2019 (COVID-19), ulcerative lesions have been episodically reported in various segments of the gastrointestinal (GI) tract, including the oral cavity, oropharynx, esophagus, stomach and bowel. In this report, we describe an autopsy case of a COVID-19 patient who showed two undiagnosed ulcers at the level of the anterior and posterior walls of the hypopharynx. Molecular testing of viruses involved in pharyngeal ulcers demonstrated the presence of severe acute respiratory syndrome – coronavirus type 2 (SARS-CoV-2) RNA, together with herpes simplex virus 1 DNA. Histopathologic analysis demonstrated full-thickness lympho-monocytic infiltration (mainly composed of CD68-positive cells), with hemorrhagic foci and necrosis of both the mucosal layer and deep skeletal muscle fibers. Fibrin and platelet microthrombi were also found. Cytological signs of HSV-1 induced damage were not found. Cells expressing SARS-CoV-2 spike subunit 1 were immunohistochemically identified in the inflammatory infiltrations. Immunohistochemistry for HSV1 showed general negativity for inflammatory infiltration, although in the presence of some positive cells. Thus, histopathological, immunohistochemical and molecular findings supported a direct role by SARS-CoV-2 in producing local ulcerative damage, although a possible contributory role by HSV-1 reactivation cannot be excluded. From a clinical perspective, this autopsy report of two undiagnosed lesions put the question if ulcers along the GI tract could be more common (but frequently neglected) in COVID-19 patients.
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- 2021
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9. Antibody Response to the BNT162b2 mRNA COVID-19 Vaccine in Subjects with Prior SARS-CoV-2 Infection
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Federico Gobbi, Dora Buonfrate, Lucia Moro, Paola Rodari, Chiara Piubelli, Sara Caldrer, Silvia Riccetti, Alessandro Sinigaglia, and Luisa Barzon
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COVID-19 vaccine ,neutralizing antibody ,anti-spike RBD IgG antibody ,BNT162b2 vaccine ,SARS-CoV-2 ,immune response ,Microbiology ,QR1-502 - Abstract
Although antibody levels progressively decrease following SARS-CoV-2 infection, the immune memory persists for months. Thus, individuals who naturally contracted SARS-CoV-2 are expected to develop a more rapid and sustained response to COVID-19 vaccines than naïve individuals. In this study, we analyzed the dynamics of the antibody response to the BNT162b2 mRNA COVID-19 vaccine in six healthcare workers who contracted SARS-CoV-2 in March 2020, in comparison to nine control subjects without a previous infection. The vaccine was well tolerated by both groups, with no significant difference in the frequency of vaccine-associated side effects, with the exception of local pain, which was more common in previously infected subjects. Overall, the titers of neutralizing antibodies were markedly higher in response to the vaccine than after natural infection. In all subjects with pre-existing immunity, a rapid increase in anti-spike receptor-binding domain (RBD) IgG antibodies and neutralizing antibody titers was observed one week after the first dose, which seemed to act as a booster. Notably, in previously infected individuals, neutralizing antibody titers 7 days after the first vaccine dose were not significantly different from those observed in naïve subjects 7 days after the second vaccine dose. These results suggest that, in previously infected people, a single dose of the vaccine might be sufficient to induce an effective response.
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- 2021
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10. Specific detection of dengue and Zika virus antibodies using envelope proteins with mutations in the conserved fusion loop
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Alexandra Rockstroh, Beyene Moges, Luisa Barzon, Alessandro Sinigaglia, Giorgio Palù, Widuranga Kumbukgolla, Jonas Schmidt-Chanasit, Manoel Sarno, Carlos Brites, Andres Moreira-Soto, Jan Felix Drexler, Orlando C Ferreira, and Sebastian Ulbert
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dengue virus ,Zika virus ,diagnosis ,cross-reactivity ,ELISA ,envelope proteins ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Detection of antibodies is widely used for the diagnosis of infections with arthropod-borne flaviviruses including dengue (DENV) and Zika virus (ZIKV). Due to the emergence of ZIKV in areas endemic for DENV, massive co-circulation is observed and methods to specifically diagnose these infections and differentiate them from each other are mandatory. However, serological assays for flaviviruses in general, and for DENV and ZIKV in particular, are compromised by the high degree of similarities in their proteins which can lead to cross-reacting antibodies and false-positive test results. Cross-reacting flavivirus antibodies mainly target the highly conserved fusion loop (FL) domain in the viral envelope (E-) protein, and we and others have shown previously that recombinant E-proteins bearing FL-mutations strongly reduce cross-reactivity. Here we investigate whether such mutant E-proteins can be used to specifically detect antibodies against DENV and ZIKV in an ELISA-format. IgM antibodies against DENV and ZIKV virus were detected with 100% and 94.2% specificity and 90.7% and 87.5% sensitivity, respectively. For IgG the mutant E-proteins showed cross-reactivity, which was overcome by pre-incubation of the sera with the heterologous antigen. This resulted in specificities of 97.1% and 97.9% and in sensitivities of 100% and 100% for the DENV and ZIKV antigens, respectively. Our results suggest that E-proteins bearing mutations in the FL-domain have a high potential for the development of serological DENV and ZIKV tests with high specificity.Emerging Microbes & Infections (2017) 6, e99; doi:10.1038/emi.2017.87; published online 8 November 2017
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- 2017
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11. SARS-CoV-2 Epitope Mapping on Microarrays Highlights Strong Immune-Response to N Protein Region
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Angelo Musicò, Roberto Frigerio, Alessandro Mussida, Luisa Barzon, Alessandro Sinigaglia, Silvia Riccetti, Federico Gobbi, Chiara Piubelli, Greta Bergamaschi, Marcella Chiari, Alessandro Gori, and Marina Cretich
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SARS-CoV-2 ,Covid-19 ,serological test ,epitope mapping ,peptide microarrays ,click chemistry ,Medicine - Abstract
A workflow for rapid SARS-CoV-2 epitope discovery on peptide microarrays is herein reported. The process started with a proteome-wide screening of immunoreactivity based on the use of a high-density microarray followed by a refinement and validation phase on a restricted panel of probes using microarrays with tailored peptide immobilization through a click-based strategy. Progressively larger, independent cohorts of Covid-19 positive sera were tested in the refinement processes, leading to the identification of immunodominant regions on SARS-CoV-2 spike (S), nucleocapsid (N) protein and Orf1ab polyprotein. A summary study testing 50 serum samples highlighted an epitope of the N protein (region 155–71) providing good diagnostic performance in discriminating Covid-19 positive vs. healthy individuals. Using this epitope, 92% sensitivity and 100% specificity were reached for IgG detection in Covid-19 samples, and no cross-reactivity with common cold coronaviruses was detected. Likewise, IgM immunoreactivity in samples collected within the first month after symptoms onset showed discrimination ability. Overall, epitope 155–171 from N protein represents a promising candidate for further development and rapid implementation in serological tests.
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- 2021
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12. Tuberculosis-Associated MicroRNAs: From Pathogenesis to Disease Biomarkers
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Alessandro Sinigaglia, Elektra Peta, Silvia Riccetti, Seshasailam Venkateswaran, Riccardo Manganelli, and Luisa Barzon
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microRNA ,tuberculosis ,diagnosis ,biomarker ,pathogenesis ,latent infection ,Cytology ,QH573-671 - Abstract
Tuberculosis (TB) caused by Mycobacterium tuberculosis is one of the most lethal infectious diseases with estimates of approximately 1.4 million human deaths in 2018. M. tuberculosis has a well-established ability to circumvent the host immune system to ensure its intracellular survival and persistence in the host. Mechanisms include subversion of expression of key microRNAs (miRNAs) involved in the regulation of host innate and adaptive immune response against M. tuberculosis. Several studies have reported differential expression of miRNAs during active TB and latent tuberculosis infection (LTBI), suggesting their potential use as biomarkers of disease progression and response to anti-TB therapy. This review focused on the miRNAs involved in TB pathogenesis and on the mechanism through which miRNAs induced during TB modulate cell antimicrobial responses. An attentive study of the recent literature identifies a group of miRNAs, which are differentially expressed in active TB vs. LTBI or vs. treated TB and can be proposed as candidate biomarkers.
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- 2020
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13. Modelling West Nile Virus and Usutu Virus Pathogenicity in Human Neural Stem Cells
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Silvia Riccetti, Alessandro Sinigaglia, Giovanna Desole, Norbert Nowotny, Marta Trevisan, and Luisa Barzon
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West Nile virus ,Usutu virus ,Zika virus ,neural stem cells ,human induced pluripotent stem cells ,innate antiviral response ,Microbiology ,QR1-502 - Abstract
West Nile virus (WNV) and Usutu virus (USUV) are genetically related neurotropic mosquito-borne flaviviruses, which frequently co-circulate in nature. Despite USUV seeming to be less pathogenic for humans than WNV, the clinical manifestations induced by these two viruses often overlap and may evolve to produce severe neurological complications. The aim of this study was to investigate the effects of WNV and USUV infection on human induced pluripotent stem cell-derived neural stem cells (hNSCs), as a model of the neural progenitor cells in the developing fetal brain and in adult brain. Zika virus (ZIKV), a flavivirus with known tropism for NSCs, was used as the positive control. Infection of hNSCs and viral production, effects on cell viability, apoptosis, and innate antiviral responses were compared among viruses. WNV displayed the highest replication efficiency and cytopathic effects in hNSCs, followed by USUV and then ZIKV. In these cells, both WNV and USUV induced the overexpression of innate antiviral response genes at significantly higher levels than ZIKV. Expression of interferon type I, interleukin-1β and caspase-3 was significantly more elevated in WNV- than USUV-infected hNSCs, in agreement with the higher neuropathogenicity of WNV and the ability to inhibit the interferon response pathway.
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- 2020
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14. Human West Nile Virus Lineage 2 Infection: Epidemiological, Clinical, and Virological Findings
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Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, Silvana Pagni, Enrico Lavezzo, Fabrizio Montarsi, Gioia Capelli, and Luisa Barzon
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West Nile virus ,encephalitis ,fever ,diagnosis ,symptoms ,outbreak ,Microbiology ,QR1-502 - Abstract
West Nile virus (WNV) lineage 2 is expanding and causing large outbreaks in Europe. In this study, we analyzed the epidemiological, clinical, and virological features of WNV lineage 2 infection during the large outbreak that occurred in northern Italy in 2018. The study population included 86 patients with neuroinvasive disease (WNND), 307 with fever (WNF), and 34 blood donors. Phylogenetic analysis of WNV full genome sequences from patients’ samples showed that the virus belonged to the widespread central/southern European clade of WNV lineage 2 and was circulating in the area at least since 2014. The incidence of WNND and WNF progressively increased with age and was higher in males than in females. Among WNND patients, the case fatality rate was 22%. About 70% of blood donors reported symptoms during follow-up. Within the first week after symptom onset, WNV RNA was detectable in the blood or urine of 80% of patients, while 20% and 40% of WNND and WNF patients, respectively, were WNV IgM-seronegative. In CSF samples of WNND patients, WNV RNA was typically detectable when WNV IgM antibodies were absent. Blunted or no WNV IgM response and high WNV IgG levels were observed in seven patients with previous flavivirus immunity.
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- 2020
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15. Modeling Viral Infectious Diseases and Development of Antiviral Therapies Using Human Induced Pluripotent Stem Cell-Derived Systems
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Marta Trevisan, Alessandro Sinigaglia, Giovanna Desole, Alessandro Berto, Monia Pacenti, Giorgio Palù, and Luisa Barzon
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human induced pluripotent stem cells ,viral infection ,patient-specific disease model ,genome editing ,genetic susceptibility ,antiviral resistance ,CRISPR/Cas9 ,personalized therapy ,hepatitis C virus ,human immunodeficiency virus ,Microbiology ,QR1-502 - Abstract
The recent biotechnology breakthrough of cell reprogramming and generation of induced pluripotent stem cells (iPSCs), which has revolutionized the approaches to study the mechanisms of human diseases and to test new drugs, can be exploited to generate patient-specific models for the investigation of host–pathogen interactions and to develop new antimicrobial and antiviral therapies. Applications of iPSC technology to the study of viral infections in humans have included in vitro modeling of viral infections of neural, liver, and cardiac cells; modeling of human genetic susceptibility to severe viral infectious diseases, such as encephalitis and severe influenza; genetic engineering and genome editing of patient-specific iPSC-derived cells to confer antiviral resistance.
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- 2015
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16. Mycobacterium tuberculosis-induced miR-155 subverts autophagy by targeting ATG3 in human dendritic cells.
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Marilena P Etna, Alessandro Sinigaglia, Angela Grassi, Elena Giacomini, Alessandra Romagnoli, Manuela Pardini, Martina Severa, Melania Cruciani, Fabiana Rizzo, Eleni Anastasiadou, Barbara Di Camillo, Luisa Barzon, Gian Maria Fimia, Riccardo Manganelli, and Eliana M Coccia
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Autophagy is a primordial eukaryotic pathway, which provides the immune system with multiple mechanisms for the elimination of invading pathogens including Mycobacterium tuberculosis (Mtb). As a consequence, Mtb has evolved different strategies to hijack the autophagy process. Given the crucial role of human primary dendritic cells (DC) in host immunity control, we characterized Mtb-DC interplay by studying the contribution of cellular microRNAs (miRNAs) in the post-transcriptional regulation of autophagy related genes. From the expression profile of de-regulated miRNAs obtained in Mtb-infected human DC, we identified 7 miRNAs whose expression was previously found to be altered in specimens of TB patients. Among them, gene ontology analysis showed that miR-155, miR-155* and miR-146a target mRNAs with a significant enrichment in biological processes linked to autophagy. Interestingly, miR-155 was significantly stimulated by live and virulent Mtb and enriched in polysome-associated RNA fraction, where actively translated mRNAs reside. The putative pair interaction among the E2 conjugating enzyme involved in LC3-lipidation and autophagosome formation-ATG3-and miR-155 arose by target prediction analysis, was confirmed by both luciferase reporter assay and Atg3 immunoblotting analysis of miR-155-transfected DC, which showed also a consistent Atg3 protein and LC3 lipidated form reduction. Late in infection, when miR-155 expression peaked, both the level of Atg3 and the number of LC3 puncta per cell (autophagosomes) decreased dramatically. In accordance, miR-155 silencing rescued autophagosome number in Mtb infected DC and enhanced autolysosome fusion, thereby supporting a previously unidentified role of the miR-155 as inhibitor of ATG3 expression. Taken together, our findings suggest how Mtb can manipulate cellular miRNA expression to regulate Atg3 for its own survival, and highlight the importance to develop novel therapeutic strategies against tuberculosis that would boost autophagy.
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- 2018
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17. Role of NS1 and TLR3 in Pathogenesis and Immunity of WNV
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Sameera Patel, Alessandro Sinigaglia, Luisa Barzon, Matteo Fassan, Florian Sparber, Salome LeibundGut-Landmann, and Mathias Ackermann
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NS1 ,TLR3 ,West Nile Virus ,immunity ,pathogenesis ,subunit vaccine ,West Nile neuroinvasive disease ,Microbiology ,QR1-502 - Abstract
West Nile Virus (WNV) is a mosquito-transmitted flavivirus which causes encephalitis especially in elderly and immunocompromised individuals. Previous studies have suggested the protective role of the Toll-like receptor 3 (TLR3) pathway against WNV entry into the brain, while the WNV non-structural protein 1 (NS1) interferes with the TLR3 signaling pathway, besides being a component of viral genome replication machinery. In this study, we investigated whether immunization with NS1 could protect against WNV neuroinvasion in the context of TLR3 deficiency. We immunized mice with either an intact or deleted TLR3 system (TLR3KO) with WNV envelope glycoprotein (gE) protein, NS1, or a combination of gE and NS1. Immunization with gE or gE/NS1, but not with NS1 alone, induced WNV neutralizing antibodies and protected against WNV brain invasion and inflammation. The presence of intact TLR3 signaling had no apparent effect on WNV brain invasion. However, mock-immunized TLR3KO mice had higher inflammatory cell invasion upon WNV brain infection than NS1-immunized TLR3KO mice and wild type mice. Thus, immunization against NS1 may reduce brain inflammation in a context of TLR3 signaling deficiency.
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- 2019
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18. Vaccination of mice using the West Nile virus E-protein in a DNA prime-protein boost strategy stimulates cell-mediated immunity and protects mice against a lethal challenge.
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Marina De Filette, Silke Soehle, Sebastian Ulbert, Justin Richner, Michael S Diamond, Alessandro Sinigaglia, Luisa Barzon, Stefan Roels, Julianna Lisziewicz, Orsolya Lorincz, and Niek N Sanders
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Medicine ,Science - Abstract
West Nile virus (WNV) is a mosquito-borne flavivirus that is endemic in Africa, the Middle East, Europe and the United States. There is currently no antiviral treatment or human vaccine available to treat or prevent WNV infection. DNA plasmid-based vaccines represent a new approach for controlling infectious diseases. In rodents, DNA vaccines have been shown to induce B cell and cytotoxic T cell responses and protect against a wide range of infections. In this study, we formulated a plasmid DNA vector expressing the ectodomain of the E-protein of WNV into nanoparticles by using linear polyethyleneimine (lPEI) covalently bound to mannose and examined the potential of this vaccine to protect against lethal WNV infection in mice. Mice were immunized twice (prime--boost regime) with the WNV DNA vaccine formulated with lPEI-mannose using different administration routes (intramuscular, intradermal and topical). In parallel a heterologous boost with purified recombinant WNV envelope (E) protein was evaluated. While no significant E-protein specific humoral response was generated after DNA immunization, protein boosting of DNA-primed mice resulted in a marked increase in total neutralizing antibody titer. In addition, E-specific IL-4 T-cell immune responses were detected by ELISPOT after protein boost and CD8(+) specific IFN-γ expression was observed by flow cytometry. Challenge experiments using the heterologous immunization regime revealed protective immunity to homologous and virulent WNV infection.
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- 2014
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19. Characterization of a new CDC73 missense mutation that impairs Parafibromin expression and nucleolar localization.
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Giulia Masi, Maurizio Iacobone, Alessandro Sinigaglia, Barbara Mantelli, Gianmaria Pennelli, Ignazio Castagliuolo, Giorgio Palù, and Luisa Barzon
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Medicine ,Science - Abstract
Mutations of the Cell Division Cycle 73 (CDC73) tumor suppressor gene (previously known as HRPT2), encoding for parafibromin, are associated with the Hyperparathyroidism-Jaw Tumor (HPT-JT) syndrome, an autosomal dominant disease whose clinical manifestations are mainly parathyroid tumors and, less frequently, ossifying fibromas of the jaws, uterine and renal tumors. Most mutations of CDC73 are nonsense or frameshift, while missense mutations are rare and generally affect the N-terminal domain of parafibromin, a region that is still poorly characterized. The aim of this study was to characterize a novel somatic CDC73 missense mutation (Ile60Asn) identified in the mandibular tumor of a HPT-JT patient carrying a germline CDC73 inactivating mutation. Immunostaining of the tumor showed reduced nuclear parafibromin immunoreactivity. Western blotting and confocal microscopy of transfected cells demonstrated that the Ile60Asn mutant parafibromin was less expressed than the wild-type protein and exhibited impaired nucleolar localization. Treatment of transfected cells with translation and proteasome inhibitors demonstrated a decreased stability of the Ile60An mutant, partially due to an increase in proteasomal degradation. Overexpression of the Ile60Asn mutant led to increased cell proliferation and to accumulation in the G2/M phase of cell cycle. Moreover, mutant parafibromin lost the ability to down-regulate c-myc expression. In conclusion, our study shows that a missense mutation in the N-terminus of parafibromin, identified in an ossifying fibroma from a HPT-JT patient, stimulated cell proliferation and impaired parafibromin expression and nucleolar localization, suggesting a relevant role of the N-terminal domain for parafibromin function.
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- 2014
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20. Characterization of Intra-Type Variants of Oncogenic Human Papillomaviruses by Next-Generation Deep Sequencing of the E6/E7 Region
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Enrico Lavezzo, Giulia Masi, Stefano Toppo, Elisa Franchin, Valentina Gazzola, Alessandro Sinigaglia, Serena Masiero, Marta Trevisan, Silvana Pagni, Giorgio Palù, and Luisa Barzon
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human papillomavirus ,genotyping ,next-generation sequencing ,E6/E7 ,subtype ,variant ,cervical cancer ,high-risk HPV ,deep sequencing ,pyrosequencing ,Microbiology ,QR1-502 - Abstract
Different human papillomavirus (HPV) types are characterized by differences in tissue tropism and ability to promote cell proliferation and transformation. In addition, clinical and experimental studies have shown that some genetic variants/lineages of high-risk HPV (HR-HPV) types are characterized by increased oncogenic activity and probability to induce cancer. In this study, we designed and validated a new method based on multiplex PCR-deep sequencing of the E6/E7 region of HR-HPV types to characterize HPV intra-type variants in clinical specimens. Validation experiments demonstrated that this method allowed reliable identification of the different lineages of oncogenic HPV types. Advantages of this method over other published methods were represented by its ability to detect variants of all HR-HPV types in a single reaction, to detect variants of HR-HPV types in clinical specimens with multiple infections, and, being based on sequencing of the full E6/E7 region, to detect amino acid changes in these oncogenes potentially associated with increased transforming activity.
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- 2016
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21. Oxidative DNA damage correlates with cell immortalization and mir-92 expression in hepatocellular carcinoma
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Romilda Cardin, Marika Piciocchi, Alessandro Sinigaglia, Enrico Lavezzo, Marina Bortolami, Andromachi Kotsafti, Umberto Cillo, Giacomo Zanus, Claudia Mescoli, Massimo Rugge, and Fabio Farinati
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Hepatocellular carcinoma ,8-hydroxydeoxyguanosine ,miR-92 ,Telomeric dysfunction ,OGG1 gene ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background MicroRNAs expression has been extensively studied in hepatocellular carcinoma but little is known regarding the relationship, if any, with inflammation, production of reactive oxygen species (ROS), host’s repair mechanisms and cell immortalization. This study aimed at assessing the extent of oxidative DNA damage (8-hydroxydeoxyguanosine - 8-OHdG) in different phases of the carcinogenetic process, in relation to DNA repair gene polymorphism, telomeric dysfunction and to the expression of several microRNAs, non-coding genes involved in post-transcriptional regulation, cell proliferation, differentiation and death. Methods Tissue samples obtained either at surgery, [neoplastic (HCC) and adjacent non-cancerous cirrhotic tissues (NCCT)] at percutaneous or laparoscopic biopsy (patients with HCV or HBV-related hepatitis or patients undergoing cholecystectomy) were analysed for 8-OHdG (HPLC-ED), OGG1 (a DNA repair gene) polymorphism (PCR-RFLP), telomerase activity, telomere length (T/S, by RT-PCR), Taqman microRNA assay and Bad/Bax mRNA (RT-PCR). Fifty-eight samples from 29 HCC patients (obtained in both neoplastic and peritumoral tissues), 22 from chronic hepatitis (CH) and 10 controls (cholecystectomy patients - CON) were examined. Results Eight-OHdG levels were significantly higher in HCC and NCCT than in CH and CON (p=0.001). Telomerase activity was significantly higher in HCC than in the remaining subgroups (p=0.002); conversely T/S was significantly lower in HCC (p=0.05). MiR-199a-b, -195, -122, -92a and −145 were down-regulated in the majority of HCCs while miR-222 was up-regulated. A positive correlation was observed among 8-OHdG levels, disease stage, telomerase activity, OGG1 polymorphisms and ALT/GGT levels. In HCC, miR-92 expression correlated positively with telomerase activity, 8-OHdG levels and Bad/Bax mRNA. Conclusions The above findings confirm the accumulation, in the progression of chronic liver damage to HCC, of a ROS-mediated oxidative DNA damage, and suggest that this correlates with induction of telomerase activity and, as a novel finding, with over-expression of miR-92, a microRNA that plays a role in both the apoptotic process and in cellular proliferation pathways.
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- 2012
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22. ACE2 Receptor and TMPRSS2 Protein Expression Patterns in the Human Brainstem Reveal Anatomical Regions Potentially Vulnerable to SARS-CoV-2 Infection
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Aron Emmi, Aleksandar Tushevski, Alessandro Sinigaglia, Silvia Barbon, Michele Sandre, Elena Stocco, Veronica Macchi, Angelo Antonini, Luisa Barzon, Andrea Porzionato, and Raffaele De Caro
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Physiology ,Cognitive Neuroscience ,Cell Biology ,General Medicine ,Biochemistry - Published
- 2023
23. TRK Protein Expression in Merkel Cell Carcinoma Is Not Caused by NTRK Fusions
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Rocco Cappellesso, Lorenzo Nicolè, Paolo Del Fiore, Luisa Barzon, Alessandro Sinigaglia, Silvia Riccetti, Renato Franco, Federica Zito Marino, Giada Munari, Carolina Zamuner, Francesco Cavallin, Marta Sbaraglia, Francesca Galuppini, Franco Bassetto, Mauro Alaibac, Vanna Chiarion-Sileni, Luisa Piccin, Clara Benna, Matteo Fassan, Simone Mocellin, and Angelo Paolo Dei Tos
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EPR17341 ,Organic Chemistry ,NTRK1 ,NTRK2 ,General Medicine ,NTRK3 ,Catalysis ,Merkel cell carcinoma ,Computer Science Applications ,Inorganic Chemistry ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Merkel cell carcinoma (MCC) is a rare and aggressive cutaneous malignant tumor with neuroendocrine differentiation, with a rapidly growing incidence rate, high risk of recurrence, and aggressive behavior. The available therapeutic options for advanced disease are limited and there is a pressing need for new treatments. Tumors harboring fusions involving one of the neurotrophin receptor tyrosine kinase (NTRK) genes are now actionable with targeted inhibitors. NTRK-fused genes have been identified in neuroendocrine tumors of other sites; thus, a series of 76 MCCs were firstly analyzed with pan-TRK immunohistochemistry and the positive ones with real-time RT-PCR, RNA-based NGS, and FISH to detect the eventual underlying gene fusion. Despite 34 MCCs showing pan-TRK expression, NTRK fusions were not found in any cases. As in other tumors with neural differentiation, TRK expression seems to be physiological and not caused by gene fusions.
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- 2022
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24. Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in Italy in 2022
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Luisa Barzon, Monia Pacenti, Fabrizio Montarsi, Diletta Fornasiero, Federica Gobbo, Erika Quaranta, Isabella Monne, Alice Fusaro, Andrea Volpe, Alessandro Sinigaglia, Silvia Riccetti, Emanuela Dal Molin, Sorsha Satto, Vittoria Lisi, Federico Gobbi, Silvia Galante, Giuseppe Feltrin, Valerio Valeriano, Laura Favero, Francesca Russo, Matteo Mazzucato, Alessio Bortolami, Paolo Mulatti, Calogero Terregino, and Gioia Capelli
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General Medicine - Abstract
BackgroundA new strain of West Nile virus lineage 1 (WNV-1) emerged in the Veneto Region, northern Italy, in 2021, 8 years after the last WNV-1 outbreak in Italy. The virus, which co-circulates with West Nile virus lineage 2 (WNV-2), has become endemic in the region, where, in 2022, most human cases of neuroinvasive disease (WNND) reported in Europe have occurred.MethodsComparative analysis of the epidemiology and clinical presentation of WNV-1 and WNV-2 infection in humans, as well as the temporal and geographic distribution of WNV-1 and WNV-2 among wild birds and Culex pipiens mosquitoes in Veneto, from 16 May to 21 August 2022, to determine if the high number of WNND cases was associated with WNV-1.Results222 human cases of WNV infection were confirmed by molecular testing, including 103 with West Nile fever (WNF) and 119 with WNND. The WNV lineage was determined in 201 (90.5%) cases, comprising 138 WNV-1 and 63 WNV-2 infections. In addition, 35 blood donors tested positive, including 30 in whom WNV lineage was determined (13 WNV-1 and 17 WNV-2). Comparative analysis of the distribution of WNV-1 and WNV-2 infections among WNND cases, WNF cases and WNV-positive blood donors showed that WNND patients were more likely to have WNV-1 infection than blood donors (odds ratio 3.44; 95% confidence interval: 1.54–8.24; P = 0.0043). As observed in humans, in wild birds, WNV-1 had a higher infection rate (IR) and showed a more rapid expansion than WNV-2. At variance, the distribution of the two lineages was more even in mosquitoes, but with a trend of rapid increase of WNV-1 IR over WNV-2.ConclusionsComparative analysis of WNV-1 vs WNV-2 infection in humans, wild birds and mosquitos showed a rapid expansion of WNV-1 and suggested that WNV-1-infected patients might have an increased risk to develop severe disease.
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- 2022
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25. COVID-19 Neuropathology: evidence for SARS-CoV-2 invasion of Human Brainstem Nuclei
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Aron Emmi, Stefania Rizzo, Luisa Barzon, Michele Sandre, Elisa Carturan, Alessandro Sinigaglia, Silvia Riccetti, Mila della Barbera, Rafael Boscolo-Berto, Patrizia Cocco, Veronica Macchi, Angelo Antonini, Monica De Gaspari, Cristina Basso, Raffaele De Caro, and Andrea Porzionato
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Neurological manifestations are common in COVID-19, the disease caused by SARS-CoV-2. Despite reports of SARS-CoV-2 detection in the brain and cerebrospinal fluid of COVID-19 patients, it’s still unclear whether the virus can infect the central nervous system, and which neuropathological alterations can be ascribed to viral tropism, rather than immune-mediated mechanisms.Here, we assess neuropathological alterations in 24 COVID-19 patients and 18 matched controls who died due to pneumonia / respiratory failure. Aside from a wide spectrum of neuropathological alterations, SARS-CoV-2-immunoreactive neurons were detected in specific brainstem nuclei of 5 COVID-19 subjects. Viral RNA was also detected by real-time RT-PCR. Quantification of reactive microglia revealed an anatomically segregated pattern of inflammation within affected brainstem regions, and was higher when compared to controls. While the results of this study support the neuroinvasive potential of SARS-CoV-2, the role of SARS-CoV-2 neurotropism in COVID-19 and its long-term sequelae require further investigation.
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- 2022
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26. COVID-19 Neuropathology: Evidence for SARS-CoV-2 invasion of Human Brainstem Nuclei
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Patrizia Cocco, Stefania Rizzo, Monica De Gasperi, Cristina Basso, Elisa Carturan, Aron Emmi, Veronica Macchi, Rafael Boscolo Berto, Raffaele De Caro, Luisa Barzon, Silvia Riccetti, Alessandro Sinigaglia, Andrea Porzionato, and Mila Della Barbera
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Coronavirus disease 2019 (COVID-19) ,business.industry ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Medicine ,Neuropathology ,Brainstem ,business ,Virology - Abstract
Neurological manifestations are common in COVID-19, the disease caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). Despite some reports of detection of SARS-CoV-2 in the brain and cerebrospinal fluid of patients with COVID-19, it is still unclear whether the virus can infect the central nervous system (CNS), and which neuropathological alterations can be ascribed to viral tropism rather than immune-mediated mechanisms. Available autopsy reports are often conflictual, reporting a heterogeneous spectrum of neuropathological alterations, while viral proteins and RNA were detected only in sparse cells within the brainstem; furthermore, there appears to be no consistent correlation between viral invasion and neuropathological alterations to date. Here, we assess the neuropathological changes occurring in 24 patients who died following a diagnosis of SARS-CoV-2 infection in Italy during the COVID-19 pandemic (from March 2020 to May 2021) and 10 age-matched controls with comparable medical conditions. Aside from a wide spectrum of neuropathological alterations, including astrogliosis, sparse lympho-monocytic infiltrations and several instances of small vessel thromboses, we identified 5 COVID-19 subjects presenting SARS-CoV-2-immunoreactive neurons within the boundaries of the solitary tract nucleus, nucleus ambiguus and substantia nigra in the brainstem. In these subjects, viral RNA was also detected by real-time RT-PCR. Quantification of reactive microglia revealed an anatomically segregated pattern of inflammation targeting mainly the medulla oblongata and the mesencephalon, and was significantly higher when compared to controls. However, SARS-CoV-2 direct invasion did not appear to correlate with the severity of neuropathological changes. The results of this study support the neuroinvasive potential of SARS-CoV-2 by demonstrating the presence of viral proteins and genome sequences within the human brainstem, but further investigation is required to identify the link between invasion and consequent neuropathological alterations in humans.
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- 2021
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27. Serological differentiation of West Nile virus- and Usutu virus-induced antibodies by envelope proteins with modified cross-reactive epitopes
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Beatrice Sarah Berneck, Alexandra Rockstroh, Luisa Barzon, Alessandro Sinigaglia, Caterina Vocale, Maria Paola Landini, Holger F. Rabenau, Jonas Schmidt‐Chanasit, Sebastian Ulbert, and Publica
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General Veterinary ,General Immunology and Microbiology ,Flavivirus ,fusion loop ,General Medicine ,West-Nil-Virus ,mutations ,Antibodies, Viral ,Flavivirus Infections ,envelope protein ,Epitopes ,Immunoglobulin M ,Usutu virus ,West Nile virus ,Antigens, Heterophile ,Immunoglobulin G ,Animals ,Humans ,mutation ,West Nile Fever - Abstract
West Nile virus (WNV) and Usutu virus (USUV) are mosquito-borne viruses that belong to the Japanese encephalitis virus serocomplex within the genus Flavivirus. Due to climate change and the expansion of mosquito vectors, flaviviruses are becoming endemic in increasing numbers of countries. WNV infections are reported with symptoms ranging from mild fever to severe neuro-invasive disease. Until now, only a few USUV infections have been reported in humans, mostly with mild symptoms. The serological diagnosis and differentiation between flavivirus infections, in general, and between WNV and USUV, in particular, are challenging due to the high degree of cross-reacting antibodies, especially of those directed against the conserved fusion loop (FL) domain of the envelope (E) protein. We have previously shown that E proteins containing four amino-acid mutations in and near the FL strongly reduce the binding of cross-reactive antibodies leading to diagnostic technologies with improved specificities. Here, we expanded the technology to USUV and analyzed the differentiation of USUV- and WNV-induced antibodies in humans. IgG ELISAs modified by an additional competition step with the heterologous antigen resulted in overall specificities of 93.94% for WNV Equad and 92.75% for USUV Equad. IgM antibodies against WNV could be differentiated from USUV IgM in a direct comparison using both antigens. The data indicate the potential of the system to diagnose antigenically closely related flavivirus infections.
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- 2021
28. New avenues for therapeutic discovery against West Nile virus
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Alessandro Sinigaglia, Elektra Peta, Luisa Barzon, and Silvia Riccetti
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Drug ,NS3 ,NS5 ,medicine.drug_class ,viruses ,media_common.quotation_subject ,Mosquito Vectors ,Virus Replication ,Antiviral Agents ,Virus ,Zika virus ,Therapeutic antibody ,03 medical and health sciences ,0302 clinical medicine ,Drug Development ,Antiviral drug ,drug discovery ,Flavivirus ,siRNA ,Vaccine ,West Nile virus ,Drug Discovery ,medicine ,Animals ,Humans ,030304 developmental biology ,media_common ,0303 health sciences ,biology ,Drug discovery ,virus diseases ,biology.organism_classification ,Virology ,Immunity, Innate ,Review article ,030220 oncology & carcinogenesis ,West Nile Fever - Abstract
Introduction: West Nile virus (WNV) is a neurotropic mosquito-borne flavivirus, which is endemic in many countries, especially in Europe and in North America, where the virus has increased its activity in the recent years. No vaccines nor antiviral drugs are available for the prevention and treatment of WNV infection in humans.Areas covered: This review article describes viral and host targets that have been addressed by anti-WNV drug discovery studies and summarizes the most relevant anti-WNV candidate compounds identified so far, focusing on those showing antiviral efficacy in in vivo models and broad-spectrum anti-flavivirus activity.Expert opinion: The most promising anti-WNV drug candidates target conserved enzymatic motifs in viral NS3 protease and NS5 polymerase and are effective against different flaviviruses. Targeting host factors required for viral infection and replication and modulation of host innate antiviral response are also promising approaches, which may lead to the development of compounds with broad-spectrum antiviral activity, a desirable feature for an antiviral drug.
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- 2020
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29. Autochthonous dengue outbreak in Italy 2020: clinical, virological and entomological findings
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Mario Rassu, Federico Gobbi, Felice Foglia, Vinicio Manfrin, Fabrizio Montarsi, Maria Teresa Padovan, Francesca Russo, Gioia Capelli, Monia Pacenti, Luisa Barzon, Simone Martini, Francesca Zanella, Silvia Riccetti, Alessandro Sinigaglia, G. Pavan, and Luca Lazzarini
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viruses ,030231 tropical medicine ,Context (language use) ,Mosquito Vectors ,Arbovirus ,Disease Outbreaks ,Dengue fever ,Dengue ,03 medical and health sciences ,0302 clinical medicine ,Aedes koreicus ,Aedes ,Pandemic ,follow-up ,Animals ,Humans ,Medicine ,030212 general & internal medicine ,Phylogeny ,saliva ,DENV ,biology ,SARS-CoV-2 ,business.industry ,Transmission (medicine) ,virus diseases ,COVID-19 ,Outbreak ,General Medicine ,Dengue Virus ,Aedes albopictus ,medicine.disease ,biology.organism_classification ,Virology ,urine ,3. Good health ,surveillance ,Female ,Italy ,Original Article ,business ,AcademicSubjects/MED00295 - Abstract
Background In August 2020, in the context of COVID-19 pandemics, an autochthonous dengue outbreak was identified for the first time in Italy. Methods Following the reporting of the index case of autochthonous dengue, epidemiological investigation, vector control and substances of human origin safety measures were immediately activated, according to the national arbovirus surveillance plan. Dengue cases were followed-up with weekly visits and laboratory tests until recovery and clearance of viral RNA from blood. Results The primary dengue case was identified in a young woman, who developed fever after returning from Indonesia to northern Italy, on 27 July 2020. She spent the mandatory quarantine for COVID-19 at home with relatives, six of whom developed dengue within two weeks. Epidemiological investigation identified further five autochthonous dengue cases among people who lived or stayed near the residence of the primary case. The last case of the outbreak developed fever on 29 September 2020. Dengue cases had a mild febrile illness, except one with persistent asthenia and myalgia. DENV-1 RNA was detected in blood and/or urine in all autochthonous cases, up to 35 days after fever onset. All cases developed IgM and IgG antibodies which cross-reacted with West Nile virus (WNV) and other flaviviruses. Sequencing of the full viral genome from blood samples showed over 99% nucleotide identity with DENV-1 strains isolated in China in 2014–2015; phylogenetic analysis classified the virus within Genotype I. Entomological site inspection identified a high density of Aedes albopictus mosquitoes, which conceivably sustained local DENV-1 transmission. Aedes koreicus mosquitoes were also collected in the site. Conclusions Areas in Europe with high density of Aedes mosquitoes should be considered at risk for dengue transmission. The presence of endemic flaviviruses, such as WNV, might pose problems in the laboratory diagnosis.
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- 2021
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30. Antibody response in individuals infected with SARS-CoV-2 early after the first dose of the BNT162b2 mRNA vaccine
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Alessandro Sinigaglia, Davide Martini, Zeno Bisoffi, Federico Gobbi, Chiara Piubelli, Silvia Riccetti, Luisa Barzon, Ronaldo Silva, and Dora Buonfrate
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Microbiology (medical) ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Delayed second vaccine dose ,03 medical and health sciences ,0302 clinical medicine ,RBD-binding IgG antibody ,Medicine ,Humans ,030212 general & internal medicine ,Neutralizing antibody ,Adverse effect ,Letter to the Editor ,BNT162 Vaccine ,030304 developmental biology ,0303 health sciences ,Messenger RNA ,Vaccines, Synthetic ,BNT162b2 vaccine ,biology ,business.industry ,SARS-CoV-2 ,SARS-CoV-2 infection ,COVID-19 ,Virology ,3. Good health ,mRNA vaccine ,Infectious Diseases ,Antibody response ,Adverse events ,Antibody Formation ,biology.protein ,mRNA Vaccines ,business - Published
- 2021
31. Evaluation of DestiNA ‘spin-tube’ technology – a novel test for the diagnosis of tuberculosis and mycobacteriosis
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Mark Bradley, Aaron Navarro Garcia, Larisa Chernousova, Juan Diaz Mochon, Adrian Garcia Sirera, Ekaterina Kiseleva, Riccardo Manganelli, Elena Larionova, Atadzhan Ergeshov, Alessandro Sinigaglia, Seshasailam Venkateswaran, Mavys Trabue, Mario Antonio Fara, Tatiana Smirnova, Daniel J. Norman, Irina Andrievskaya, Sofya Andreevskaya, Antonio Martínez-Murcia, and Luisa Barzon
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Tuberculosis ,Materials science ,Nuclear magnetic resonance ,medicine ,Tube (fluid conveyance) ,medicine.disease ,Spin-½ - Published
- 2020
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32. Clinical and virological findings in patients with Usutu virus infection, northern Italy, 2018
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Marco Zoccarato, Luisa Barzon, Gioia Capelli, Monia Pacenti, Carlo Giovanni Doroldi, Francesco Bigolin, Lucia Nardetto, Elisa Franchin, Silvana Pagni, Alessandro Sinigaglia, Fabrizio Montarsi, Maria Elena De Rui, Elektra Peta, Luca Santelli, Silvia Riccetti, Adelaide Milani, and Thomas Martello
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0301 basic medicine ,Genotyping Techniques ,Epidemiology ,viruses ,encephalitis ,030106 microbiology ,Enzyme-Linked Immunosorbent Assay ,Antibodies, Viral ,Arbovirus ,Neutralization ,Flavivirus Infections ,Serology ,Diagnosis, Differential ,03 medical and health sciences ,Virology ,medicine ,West Nile Virus ,Animals ,Humans ,Usutu virus ,Phylogeny ,fever ,Surveillance ,Whole Genome Sequencing ,medicine.diagnostic_test ,biology ,Flavivirus ,Public Health, Environmental and Occupational Health ,virus diseases ,Nucleic acid test ,biology.organism_classification ,medicine.disease ,Antibodies, Neutralizing ,Culicidae ,030104 developmental biology ,Italy ,Immunoglobulin M ,Immunoglobulin G ,Population Surveillance ,biology.protein ,human infection ,Antibody ,Sentinel Surveillance ,West Nile Fever ,Encephalitis - Abstract
Background Usutu virus (USUV) is a mosquito-borne flavivirus, which shares its transmission cycle with the phylogenetically related West Nile virus (WNV). USUV circulates in several European countries and its activity has increased over the last 5 years. Aim To describe human cases of USUV infection identified by surveillance for WNV and USUV infection in the Veneto Region of northern Italy in 2018. Methods From 1 June to 30 November 2018, all cases of suspected autochthonous arbovirus infection and blood donors who had a reactive WNV nucleic acid test were investigated for both WNV and USUV infection by in-house molecular methods. Anti-WNV and anti-USUV IgM and IgG antibodies were detected by ELISA and in-house immunofluorescence assay, respectively; positive serum samples were further tested by WNV and USUV neutralisation assays run in parallel. Results Eight cases of USUV infection (one with neuroinvasive disease, six with fever and one viraemic blood donor who developed arthralgia and myalgia) and 427 cases of WNV infection were identified. A remarkable finding of this study was the persistence of USUV RNA in the blood and urine of three patients during follow-up. USUV genome sequences from two patients shared over 99% nt identity with USUV sequences detected in mosquito pools from the same area and clustered within lineage Europe 2. Conclusions Clinical presentation and laboratory findings in patients with USUV infection were similar to those found in patients with WNV infection. Cross-reactivity of serology and molecular tests challenged the differential diagnosis.
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- 2019
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33. Modelling Neurotropic Flavivirus Infection in Human Induced Pluripotent Stem Cell-Derived Systems
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Alessandro Sinigaglia, Luisa Barzon, Marta Trevisan, Silvia Riccetti, Giulia Masi, Monia Pacenti, and Giovanna Desole
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induced pluripotent stem cell ,viruses ,Dengue virus ,Virus Replication ,medicine.disease_cause ,Zika virus ,lcsh:Chemistry ,neural stem cell ,Neural Stem Cells ,flavivirus ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Cells, Cultured ,Spectroscopy ,Neurons ,Cell Death ,biology ,Neurogenesis ,apoptosis ,virus diseases ,Cell Differentiation ,General Medicine ,Neural stem cell ,Computer Science Applications ,Flavivirus ,West Nile virus ,Apoptosis ,Infection ,Innate immune response ,Neuron ,Viral replication ,Induced Pluripotent Stem Cells ,Models, Biological ,Article ,Catalysis ,Flavivirus Infections ,Inorganic Chemistry ,medicine ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,Tropism ,Innate immune system ,dengue virus ,Organic Chemistry ,biology.organism_classification ,Virology ,neuron ,infection ,Viral Tropism ,lcsh:Biology (General) ,lcsh:QD1-999 ,innate immune response ,viral replication - Abstract
Generation of human induced pluripotent stem cells (hiPSCs) and their differentiation into a variety of cells and organoids have allowed setting up versatile, non-invasive, ethically sustainable, and patient-specific models for the investigation of the mechanisms of human diseases, including viral infections and host&ndash, pathogen interactions. In this study, we investigated and compared the infectivity and replication kinetics in hiPSCs, hiPSC-derived neural stem cells (NSCs) and undifferentiated neurons, and the effect of viral infection on host innate antiviral responses of representative flaviviruses associated with diverse neurological diseases, i.e., Zika virus (ZIKV), West Nile virus (WNV), and dengue virus (DENV). In addition, we exploited hiPSCs to model ZIKV infection in the embryo and during neurogenesis. The results of this study confirmed the tropism of ZIKV for NSCs, but showed that WNV replicated in these cells with much higher efficiency than ZIKV and DENV, inducing massive cell death. Although with lower efficiency, all flaviviruses could also infect pluripotent stem cells and neurons, inducing similar patterns of antiviral innate immune response gene expression. While showing the usefulness of hiPSC-based infection models, these findings suggest that additional virus-specific mechanisms, beyond neural tropism, are responsible for the peculiarities of disease phenotype in humans.
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- 2019
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34. West Nile virus infection in individuals with pre-existing Usutu virus immunity, northern Italy, 2018
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Monia Pacenti, Silvana Pagni, Thomas Martello, Elisa Franchin, Luisa Barzon, and Alessandro Sinigaglia
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0301 basic medicine ,Male ,cross-protection ,Epidemiology ,animal diseases ,viruses ,antibody cross-reactivity ,medicine.disease_cause ,Antibodies, Viral ,Polymerase Chain Reaction ,Neutralization ,Disease Outbreaks ,secondary infection ,Public Health Surveillance ,Usutu virus ,Phylogeny ,biology ,virus diseases ,Middle Aged ,Culex ,Italy ,Female ,West Nile virus ,Rapid Communication ,Adult ,Secondary infection ,030106 microbiology ,Enzyme-Linked Immunosorbent Assay ,Real-Time Polymerase Chain Reaction ,03 medical and health sciences ,Immunity ,Neutralization Tests ,Virology ,medicine ,Animals ,Humans ,West Nile Virus Infection ,Flavivirus ,Public Health, Environmental and Occupational Health ,Outbreak ,biology.organism_classification ,Antibodies, Neutralizing ,Northern italy ,nervous system diseases ,030104 developmental biology ,Immunoglobulin G ,West Nile Fever - Abstract
In 2018, there was a large West Nile virus (WNV) outbreak in northern Italy. We observed five atypical cases of WNV infection that were characterised by the presence of WNV RNA and WNV IgG at the time of diagnosis, but no IgM response during follow-up. Neutralisation assays demonstrated pre-existing Usutu virus immunity in all patients. Besides challenging diagnosis, the immunological crosstalk between the two viruses warrants further investigation on possible cross-protection or infection enhancement effects.
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- 2019
35. Specific detection and differentiation of tick-borne encephalitis and West Nile virus induced IgG antibodies in humans and horses
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Norbert Nowotny, Friedrich Schmoll, Alexandra Rockstroh, Beatrice Sarah Berneck, Tatjana Sattler, Sebastian Ulbert, Luisa Barzon, Monia Pacenti, Alessandro Sinigaglia, Jonas Schmidt-Chanasit, Sandra Revilla-Fernández, Beyene Moges, and Publica
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cross-reactivity ,040301 veterinary sciences ,tick-borne encephalitis virus ,viruses ,serology ,ELISA ,West Nile virus ,zoonoses ,Antibodies, Viral ,medicine.disease_cause ,Cross-reactivity ,Virus ,Encephalitis Viruses, Tick-Borne ,Serology ,0403 veterinary science ,03 medical and health sciences ,medicine ,Animals ,Humans ,Flavivirus Infections ,Horses ,030304 developmental biology ,0303 health sciences ,General Veterinary ,General Immunology and Microbiology ,biology ,Tick-borne encephalitis ,virus diseases ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,medicine.disease ,Virology ,nervous system diseases ,Tick-borne encephalitis virus ,Immunoglobulin G ,biology.protein ,Horse Diseases ,Antibody ,Encephalitis, Tick-Borne ,West Nile Fever ,Encephalitis - Abstract
Tick-borne encephalitis virus (TBEV) and West Nile virus (WNV) are important arthropod-borne zoonotic flaviviruses. Due to the emergence of WNV in TBEV-endemic regions co-circulation of both viruses is increasing. Flaviviruses are structurally highly similar, which leads to cross-reacting antibodies upon infection. Currently available serological assays for TBEV and WNV infections are therefore compromised by false-positive results, especially in IgG measurements. In order to discriminate both infections novel diagnostic methods are needed. We describe an ELISA to measure IgG antibodies specific for TBEV and WNV, applicable to human and horse sera. Mutant envelope proteins were generated, that lack conserved parts of the fusion loop domain, a predominant target for cross-reacting antibodies. These were incubated with equine and human sera with known TBEV, WNV or other flavivirus infections. For WNV IgG, specificities and sensitivities were 100% and 87.9%, respectively, for horse sera, and 94.4% and 92.5%, respectively, for human sera. TBEV IgG was detected with specificities and sensitivities of 95% and 96.7%, respectively, in horses, and 98.9% and 100%, respectively, in humans. Specificities increased to 100% by comparing individual samples on both antigens. The antigens could form the basis for serological TBEV- and WNV-assays with improved specificities.
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- 2019
36. Modeling Viral Infectious Diseases and Development of Antiviral Therapies Using Human Induced Pluripotent Stem Cell-Derived Systems
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Luisa Barzon, Marta Trevisan, Giorgio Palù, Alessandro Berto, Monia Pacenti, Alessandro Sinigaglia, and Giovanna Desole
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hepatitis C virus ,Antiviral resistance ,CRISPR/Cas9 ,Ersonalized therapy ,Genetic susceptibility ,Genome editing ,Hepatitis C virus ,Human immunodeficiency virus ,Human induced pluripotent stem cells ,Patient-specific isease model ,Viral infection ,Infectious Diseases ,Virology ,Cell ,Induced Pluripotent Stem Cells ,lcsh:QR1-502 ,Review ,Biology ,medicine.disease_cause ,Antiviral Agents ,Models, Biological ,lcsh:Microbiology ,patient-specific disease model ,antiviral resistance ,medicine ,Genetic predisposition ,CRISPR ,genome editing ,Animals ,Humans ,Induced pluripotent stem cell ,personalized therapy ,human immunodeficiency virus ,Antimicrobial ,3. Good health ,human induced pluripotent stem cells ,medicine.anatomical_structure ,Virus Diseases ,Immunology ,Viruses ,viral infection ,Reprogramming ,genetic susceptibility ,Virus Physiological Phenomena - Abstract
The recent biotechnology breakthrough of cell reprogramming and generation of induced pluripotent stem cells (iPSCs), which has revolutionized the approaches to study the mechanisms of human diseases and to test new drugs, can be exploited to generate patient-specific models for the investigation of host–pathogen interactions and to develop new antimicrobial and antiviral therapies. Applications of iPSC technology to the study of viral infections in humans have included in vitro modeling of viral infections of neural, liver, and cardiac cells; modeling of human genetic susceptibility to severe viral infectious diseases, such as encephalitis and severe influenza; genetic engineering and genome editing of patient-specific iPSC-derived cells to confer antiviral resistance.
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- 2015
37. In silico approaches to Zika virus drug discovery
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Marta Trevisan, Alessandro Sinigaglia, Luisa Barzon, and Silvia Riccetti
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0301 basic medicine ,medicine.medical_specialty ,drug design ,In silico ,education ,Ns3 helicase ,Global Health ,Antiviral Agents ,Zika virus ,03 medical and health sciences ,hit discovery ,0302 clinical medicine ,NS5 MTase/RdRp ,Drug Development ,Pregnancy ,Drug Discovery ,Medicine ,Animals ,Humans ,Computer Simulation ,030212 general & internal medicine ,NS3 helicase ,Virtual screening ,biology ,business.industry ,Drug discovery ,Zika Virus Infection ,Antiviral drugs ,Public health ,Drug Discovery3003 Pharmaceutical Science ,NS2B-NS3 protease ,virtual screening ,biology.organism_classification ,Virology ,030104 developmental biology ,Female ,Public Health ,business - Abstract
After the WHO declared Zika virus (ZIKV) as a public health emergency of international concern, intense research for the development of vaccines and drugs has been undertaken, leading to the development of several candidates. Areas covered: This review discusses the developments achieved so far by computational methods in the discovery of candidate compounds targeting ZIKV proteins, i.e. the envelope and capsid structural proteins, the NS3 helicase/protease, and the NS5 methyltransferase/RNA-dependent RNA polymerase. Expert opinion: Research for effective drugs against ZIKV is still in a very early discovery phase. Notwithstanding the intense efforts for the development of new drugs and the identification of several promising candidates by using different approaches, including computational methods, so far only a few candidates have been experimentally tested. An important caveat of anti-flavivirus drug development is represented by the difficult of reproducing the in vivo microenvironment of the replication complex, which may lead to discrepancies between in vitro results and experimental evaluation in vivo. Moreover, anti-ZIKV drugs have the additional requirement of an excellent safety profile in pregnancy and ability to diffuse to different tissues, including the central nervous system, the testis, and the placenta.
- Published
- 2018
38. HPV16 E6 and E7 upregulate the histone lysine demethylase KDM2B through the c-MYC/miR-146a-5p axys
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Barbara Di Camillo, Luisa Barzon, Alessandro Sinigaglia, Erminia Manfrin, Giorgio Palù, Giulia Masi, Arianna Loregian, Angela Grassi, Guido Martignoni, Lorenzo Messa, Matteo Brunelli, Elektra Peta, and Marta Trevisan
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Male ,0301 basic medicine ,Jumonji Domain-Containing Histone Demethylases ,Cancer Research ,cervical cancer ,Papillomavirus E7 Proteins ,Cell ,Uterine Cervical Neoplasms ,KDM2B ,hystone demethylase KDM2B ,medicine.disease_cause ,Gene Expression Regulation, Enzymologic ,Proto-Oncogene Proteins c-myc ,03 medical and health sciences ,0302 clinical medicine ,microRNA ,Genetics ,medicine ,Humans ,Gene silencing ,human papillomaviruses (HPVs), cervical cancer , microRNAs (miRNAs), hystone demethylase KDM2B ,human papillomaviruses (HPVs) ,Molecular Biology ,Cells, Cultured ,Regulation of gene expression ,biology ,microRNAs (miRNAs) ,F-Box Proteins ,Infant, Newborn ,Cancer ,Oncogene Proteins, Viral ,Cell Transformation, Viral ,medicine.disease ,Up-Regulation ,Repressor Proteins ,MicroRNAs ,HEK293 Cells ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Demethylase ,Female ,Carcinogenesis ,HeLa Cells ,Signal Transduction - Abstract
Persistent infection by high-risk human papillomaviruses (HPVs) is associated with the development of cervical cancer and a subset of anogenital and head and neck squamous cell carcinomas. Abnormal expression of cellular microRNAs (miRNAs) plays an important role in the development of cancer, including HPV-related tumors. In this study, we demonstrated that miR-146a-5p was down-regulated by E6 and, less efficiently, by E7 of high-risk HPV16 in keratinocytes and the presence of low levels of this miRNA in cervical carcinoma cell lines and in high-risk HPV-positive cervical specimens. Down-regulation of miR-146a-5p was mediated at least in part by the transcription repressor c-MYC, through binding sites in the miR-146a promoter. Overexpression of miR-146a-5p significantly inhibited proliferation and migration of keratinocytes and cervical cancer cells. The histone demethylase KDM2B was validated as a new direct target of miR-146a-5p and two putative binding sites for miR-146a-5p were identified in its 3'UTR sequence. Western blot analysis and immunohistochemistry showed that KDM2B was overexpressed in HPV16 E6/E7-positive keratinocytes, in cervical cancer cell lines, and in a subset of invasive cervical carcinomas and HPV-positive laryngeal squamous cell carcinomas. In these tumors, KDM2B overexpression was associated with c-MYC copy number gain. In vitro, silencing of KDM2B inhibited proliferation of cervical cancer cells. In conclusion, this study identified a novel player, the hystone demethylase KDM2B, in HPV-mediated tumorigenesis. E6 and, less efficiently, E7 of high-risk HPV16 up-regulated KDM2B expression in human keratinocytes through a pathway involving overexpression of c-MYC, which in turn downregulated miR-146a-5p.
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- 2018
39. Mycobacterium tuberculosis-induced miR-155 subverts autophagy by targeting ATG3 in human dendritic cells
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Gian Maria Fimia, Alessandro Sinigaglia, Manuela Pardini, Riccardo Manganelli, Fabiana Rizzo, Angela Grassi, Barbara Di Camillo, Melania Cruciani, Luisa Barzon, Eleni Anastasiadou, Marilena P. Etna, Eliana M. Coccia, Martina Severa, Elena Giacomini, and Alessandra Romagnoli
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0301 basic medicine ,Autophagosome ,Microarrays ,Autolysosome ,Autophagy-Related Proteins ,Biochemistry ,0302 clinical medicine ,Gene expression ,lcsh:QH301-705.5 ,Cells, Cultured ,Regulation of gene expression ,Cultured ,Cell Death ,Gene Ontologies ,Messenger RNA ,Autophagosomes ,Autophagy ,Dendritic Cells ,Gene Expression Regulation ,HEK293 Cells ,Host-Pathogen Interactions ,Humans ,MicroRNAs ,Mycobacterium tuberculosis ,Ubiquitin-Conjugating Enzymes ,Parasitology ,Microbiology ,Immunology ,Molecular Biology ,Genetics ,Virology ,Genomics ,3. Good health ,Cell biology ,Actinobacteria ,Nucleic acids ,Bioassays and Physiological Analysis ,Cell Processes ,030220 oncology & carcinogenesis ,Cellular Structures and Organelles ,Research Article ,lcsh:Immunologic diseases. Allergy ,Programmed cell death ,Autophagic Cell Death ,Cells ,Biology ,Transfection ,Research and Analysis Methods ,miR-155 ,03 medical and health sciences ,Gene silencing ,Non-coding RNA ,Molecular Biology Techniques ,Bacteria ,Organisms ,Biology and Life Sciences ,Computational Biology ,Cell Biology ,Genome Analysis ,Gene regulation ,030104 developmental biology ,lcsh:Biology (General) ,Polyribosomes ,RNA ,lcsh:RC581-607 ,Ribosomes - Abstract
Autophagy is a primordial eukaryotic pathway, which provides the immune system with multiple mechanisms for the elimination of invading pathogens including Mycobacterium tuberculosis (Mtb). As a consequence, Mtb has evolved different strategies to hijack the autophagy process. Given the crucial role of human primary dendritic cells (DC) in host immunity control, we characterized Mtb-DC interplay by studying the contribution of cellular microRNAs (miRNAs) in the post-transcriptional regulation of autophagy related genes. From the expression profile of de-regulated miRNAs obtained in Mtb-infected human DC, we identified 7 miRNAs whose expression was previously found to be altered in specimens of TB patients. Among them, gene ontology analysis showed that miR-155, miR-155* and miR-146a target mRNAs with a significant enrichment in biological processes linked to autophagy. Interestingly, miR-155 was significantly stimulated by live and virulent Mtb and enriched in polysome-associated RNA fraction, where actively translated mRNAs reside. The putative pair interaction among the E2 conjugating enzyme involved in LC3-lipidation and autophagosome formation-ATG3-and miR-155 arose by target prediction analysis, was confirmed by both luciferase reporter assay and Atg3 immunoblotting analysis of miR-155-transfected DC, which showed also a consistent Atg3 protein and LC3 lipidated form reduction. Late in infection, when miR-155 expression peaked, both the level of Atg3 and the number of LC3 puncta per cell (autophagosomes) decreased dramatically. In accordance, miR-155 silencing rescued autophagosome number in Mtb infected DC and enhanced autolysosome fusion, thereby supporting a previously unidentified role of the miR-155 as inhibitor of ATG3 expression. Taken together, our findings suggest how Mtb can manipulate cellular miRNA expression to regulate Atg3 for its own survival, and highlight the importance to develop novel therapeutic strategies against tuberculosis that would boost autophagy., Author summary Mycobacterium tuberculosis (Mtb) is one of the most successful pathogens in human history and remains the second leading cause of death from an infectious agent worldwide. The major reason of Mtb success relies on its ability to evade host immunity. Autophagy, a cellular mechanism involved in intracellular pathogen elimination, is one of the pathways hijacked by Mtb to elude the control of dendritic cells (DC), major cellular effectors of immune response. Recently, it has become clear that Mtb infection not only alters cellular gene expression, but also controls the level of small RNA molecules, namely microRNAs (miRNAs), which function as negative regulators of mRNA translation into protein. In the present study, we observed that the infection of human DC with Mtb leads to a strong induction of host miR-155, a critical regulator of host immune response. By mean of miR-155 induction, Mtb reduces Atg3 protein content, a crucial enzyme needed for the initial phase of the autophagic process. Interestingly, miR-155 silencing during Mtb infection restores Atg3 level and rescues autophagy. These findings contribute to better elucidate Mtb-triggered escape mechanisms and highlight the importance to develop host-directed therapies to combat tuberculosis based on autophagy boosting.
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- 2018
40. Changes in microRNA expression during disease progression in patients with chronic viral hepatitis
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Maria Guido, Romilda Cardin, Rocco Cappellesso, Luisa Barzon, Ignazio Castagliuolo, Enrico Lavezzo, Melania Scarpa, Fabio Farinati, Marta Trevisan, Barbara Di Camillo, Ambrogio Fassina, Tiziana Sanavia, Elektra Peta, Alessandro Sinigaglia, Giorgio Palù, and Samantha Sarcognato
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Genetic Markers ,Liver Cirrhosis ,Male ,Cirrhosis ,epithelial-mesenchymal transition ,Biology ,Liver Cirrhosis, Experimental ,Severity of Illness Index ,chronic viral hepatitis ,liver fibrosis ,liver injury ,microRNA ,Mice ,Hepatitis B, Chronic ,Antigens, CD ,medicine ,Animals ,Humans ,Gene silencing ,Epithelial–mesenchymal transition ,Zinc Finger E-box Binding Homeobox 2 ,Epithelial cell differentiation ,Homeodomain Proteins ,Liver injury ,Hepatology ,Gene Expression Profiling ,Zinc Finger E-box-Binding Homeobox 1 ,Hepatitis C, Chronic ,Cadherins ,medicine.disease ,Phenotype ,miRNA expression analysis ,Repressor Proteins ,MicroRNAs ,Liver ,Chemical and Drug Induced Liver Injury, Chronic ,Immunology ,Disease Progression ,Viral hepatitis ,Transcription Factors - Abstract
Background & Aims MicroRNAs (miRNAs) have been involved in hepatocarcinogenesis, but little is known on their role in the progression of chronic viral hepatitis. Aim of this study was to identify miRNA signatures associated with stages of disease progression in patients with chronic viral hepatitis. Methods MiRNA expression profile was investigated in liver biopsies from patients with chronic viral hepatitis and correlated with clinical, virological and histopathological features. Relevant miRNAs were further investigated. Results Most of the significant changes in miRNA expression were associated with liver fibrosis stages and included the significant up-regulation of a group of miRNAs that were demonstrated to target the master regulators of epithelial–mesenchymal transition ZEB1 and ZEB2 and involved in the preservation of epithelial cell differentiation, but also in cell proliferation and fibrogenesis. In agreement with miRNA data, immunostaining of liver biopsies showed that expression of the epithelial marker E-cadherin was maintained in severe fibrosis/cirrhosis while expression of ZEBs and other markers of epithelial–mesenchymal transition were low or absent. Severe liver fibrosis was also significantly associated with the down-regulation of miRNAs with antiproliferative and tumour suppressor activity. Similar changes in miRNA and target gene expression were demonstrated along with disease progression in a mouse model of carbon tetrachloride (CCl4)-induced liver fibrosis, suggesting that they might represent a general response to liver injury. Conclusion Chronic viral hepatitis progression is associated with the activation of miRNA pathways that promote cell proliferation and fibrogenesis, but preserve the differentiated hepatocyte phenotype.
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- 2015
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41. Specific detection of dengue and Zika virus antibodies using envelope proteins with mutations in the conserved fusion loop
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Alessandro Sinigaglia, Jan Felix Drexler, Jonas Schmidt-Chanasit, Manoel Sarno, Beyene Moges, Widuranga Kumbukgolla, Carlos Brites, Alexandra Rockstroh, Andres Moreira-Soto, Giorgio Palù, Sebastian Ulbert, Luisa Barzon, Orlando C. Ferreira, and Publica
- Subjects
0301 basic medicine ,cross-reactivity ,Epidemiology ,diagnosis ,viruses ,Dengue virus ,medicine.disease_cause ,600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit ,Antibodies, Viral ,Dengue fever ,Serology ,Zika virus ,Dengue ,Viral Envelope Proteins ,Drug Discovery ,envelope proteins ,Antigens, Viral ,biology ,Zika Virus Infection ,virus diseases ,General Medicine ,Flavivirus ,Infectious Diseases ,Original Article ,ELISA ,030106 microbiology ,Immunology ,Enzyme-Linked Immunosorbent Assay ,Cross Reactions ,600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::616 Krankheiten ,Microbiology ,Sensitivity and Specificity ,Virus ,Diagnosis, Differential ,03 medical and health sciences ,Viral envelope ,Antigen ,Virology ,medicine ,Humans ,Serologic Tests ,dengue virus ,Zika Virus ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,medicine.disease ,Immunoglobulin M ,Immunoglobulin G ,Parasitology ,Mutant Proteins - Abstract
Detection of antibodies is widely used for the diagnosis of infections with arthropod-borne flaviviruses including dengue (DENV) and Zika virus (ZIKV). Due to the emergence of ZIKV in areas endemic for DENV, massive co-circulation is observed and methods to specifically diagnose these infections and differentiate them from each other are mandatory. However, serological assays for flaviviruses in general, and for DENV and ZIKV in particular, are compromised by the high degree of similarities in their proteins which can lead to cross-reacting antibodies and false-positive test results. Cross- reacting flavivirus antibodies mainly target the highly conserved fusion loop (FL) domain in the viral envelope (E-) protein, and we and others have shown previously that recombinant E-proteins bearing FL-mutations strongly reduce cross-reactivity. Here we investigate whether such mutant E-proteins can be used to specifically detect antibodies against DENV and ZIKV in an ELISA- format. IgM antibodies against DENV and ZIKV virus were detected with 100% and 94.2% specificity and 90.7% and 87.5% sensitivity, respectively. For IgG the mutant E-proteins showed cross-reactivity, which was overcome by pre- incubation of the sera with the heterologous antigen. This resulted in specificities of 97.1% and 97.9% and in sensitivities of 100% and 100% for the DENV and ZIKV antigens, respectively. Our results suggest that E-proteins bearing mutations in the FL-domain have a high potential for the development of serological DENV and ZIKV tests with high specificity.
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- 2017
42. Down-regulation of microRNA-146a is associated with high-risk human papillomavirus infection and epidermal growth factor receptor overexpression in penile squamous cell carcinoma
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Giulia Masi, Rocco Cappellesso, Elektra Peta, Luisa Barzon, Elisa Vassarotto, Giorgio Palù, Marta Trevisan, Angela Grassi, Ambrogio Fassina, Barbara Di Camillo, and Alessandro Sinigaglia
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0301 basic medicine ,Oncology ,Keratinocytes ,Male ,Time Factors ,Cell ,Uterine Cervical Neoplasms ,Foreskin ,Genotype ,Epidermal growth factor receptor ,E6 ,Penile squamous cell carcinoma ,Up-Regulation ,ErbB Receptors ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,HPV16 ,Human papillomavirus ,MiR-146a ,Carcinoma, Squamous Cell ,Female ,Signal Transduction ,medicine.medical_specialty ,Down-Regulation ,Biology ,Transfection ,Polymorphism, Single Nucleotide ,Pathology and Forensic Medicine ,03 medical and health sciences ,Downregulation and upregulation ,Internal medicine ,microRNA ,medicine ,Biomarkers, Tumor ,Penile cancer ,Humans ,Penile Neoplasms ,Cell Proliferation ,Papillomavirus Infections ,Oncogene Proteins, Viral ,medicine.disease ,Repressor Proteins ,MicroRNAs ,030104 developmental biology ,Cancer research ,biology.protein ,Ectopic expression ,HeLa Cells - Abstract
Dysregulation of host microRNA expression has been involved in the development and progression of human papillomavirus (HPV)-related tumors. Analysis of miR-146a expression in a series of 59 penile squamous cell carcinomas (PSCCs) showed that its levels were lower in high-risk HPV-positive than in HPV-negative PSCCs and inversely correlated with expression of epidermal growth factor receptor (EGFR), a known target for miR-146a. Analysis of genotype distribution for rs2910164, a common functional polymorphism of miR-146a, did not identify correlations with miR-146a levels and EGFR expression in PSCCs. In vitro experiments demonstrated that E6 of HPV type 16, but not low-risk HPV-6, down-regulated miR-146a in human foreskin keratinocytes and up-regulated EGFR. Ectopic expression of miR-146a decreased expression of EGFR and inhibited proliferation of keratinocytes and cervical carcinoma cells. EGFR is commonly overexpressed in penile cancer and in other squamous cell carcinomas. Molecular mechanisms leading to EGFR overexpression and activation are known for HPV-negative cancers and include amplification or mutations of the EGFR gene. The results of this study indicate that down-regulation of miR-146a may represent another mechanism of EGFR overexpression in PSCCs, which can be mediated by high-risk HPV E6 in HPV-related tumors.
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- 2016
43. Isolation of West Nile Virus from Urine Samples of Patients with Acute Infection
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Monia Pacenti, Giorgio Palù, Luisa Barzon, Laura Squarzon, Alessandro Sinigaglia, Riccardo Cusinato, Sebastian Ulbert, Elisa Franchin, and Publica
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Microbiology (medical) ,Virus Cultivation ,Isolation (health care) ,Diagnostic Tests, Routine ,West Nile virus ,animal diseases ,viruses ,virus diseases ,Acute infection ,Urine ,Biology ,medicine.disease_cause ,Virology ,virology ,nervous system diseases ,medicine ,Humans ,West Nile Fever - Abstract
This study demonstrated that West Nile virus (WNV) excreted in the urine of patients with acute infection can be isolated in cell cultures. In addition, the protocols for WNV isolation from urine samples were standardized, and factors that may affect the efficiency of WNV isolation were identified.
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- 2014
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44. Isolation of infectious Zika virus from saliva and prolonged viral RNA shedding in a traveller returning from the Dominican Republic to Italy, January 2016
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Luisa Barzon, Alessandro Berto, Enrico Lavezzo, Pierluigi Brugnaro, Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, and Giorgio Palù
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0301 basic medicine ,Saliva ,Isolation (health care) ,Epidemiology ,diagnosis ,Zika virus ,Young Adult ,03 medical and health sciences ,Virology ,genome sequencing ,saliva ,transmission ,virus isolation ,Humans ,Medicine ,Viral rna ,Symptom onset ,Viral shedding ,Travel ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Sequence Analysis, RNA ,Zika Virus Infection ,Transmission (medicine) ,business.industry ,Dominican Republic ,Public Health, Environmental and Occupational Health ,Febrile illness ,biology.organism_classification ,Virus Shedding ,030104 developmental biology ,Italy ,RNA, Viral ,business - Abstract
We report the isolation of infectious Zika virus (ZIKV) in cell culture from the saliva of a patient who developed a febrile illness after returning from the Dominican Republic to Italy, in January 2016. The patient had prolonged shedding of viral RNA in saliva and urine, at higher load than in blood, for up to 29 days after symptom onset. Sequencing of ZIKV genome showed relatedness with strains from Latin America.
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- 2016
45. West Nile virus infection in children
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Marta Trevisan, Luisa Barzon, Alessandro Sinigaglia, Monia Pacenti, Alessandro Berto, and Giorgio Palù
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Male ,diagnosis ,animal diseases ,viruses ,encephalitis ,Breastfeeding ,Disease ,Antibodies, Viral ,Disease Outbreaks ,prevention ,Pregnancy ,Epidemiology ,Child ,biology ,Transmission (medicine) ,virus diseases ,Europe ,Flavivirus ,Infectious Diseases ,Breast Feeding ,Child, Preschool ,Breast milk ,epidemiology ,in utero infection ,symptoms ,West Nile fever ,West Nile neuroinvasive disease ,West Nile virus ,Microbiology (medical) ,Microbiology ,Virology ,Female ,Encephalitis ,medicine.medical_specialty ,Adolescent ,medicine ,Animals ,Humans ,business.industry ,Outbreak ,biology.organism_classification ,medicine.disease ,Infectious Disease Transmission, Vertical ,nervous system diseases ,Culicidae ,Immunology ,North America ,business ,Breast feeding ,West Nile Fever - Abstract
West Nile virus (WNV) is an emerging flavivirus responsible for an increasing number of outbreaks of neuroinvasive disease in North America, Europe, and neighboring countries. Almost all WNV infections in humans are transmitted through the bite of infected mosquitoes. Transmission during pregnancy and through breastfeeding has been reported, but the risk seems to be very low. West Nile disease in children is less common (1-5% of all WNV cases) and associated with milder symptoms and better outcome than in elderly individuals, even though severe neuroinvasive disease and death have been reported also among children. However, the incidence of WNV infection and disease in children is probably underestimated and the disease spectrum is not fully understood because of lack of reporting and underdiagnosis in children. Infection is diagnosed by detection of WNV-specific antibodies in serum and WNV RNA in plasma and urine. Since no effective WNV-specific drugs are available, therapy is mainly supportive.
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- 2015
46. Erratum to: Oxidative DNA damage correlates with cell immortalization and mir-92 expression in hepatocellular carcinoma
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Romilda Cardin, Claudia Mescoli, Giacomo Zanus, Fabio Farinati, Enrico Lavezzo, Massimo Rugge, Andromachi Kotsafti, Alessandro Sinigaglia, Marina Bortolami, M. Piciocchi, and Umberto Cillo
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Cancer Research ,Telomerase ,Pathology ,medicine.medical_specialty ,Cell growth ,DNA repair ,DNA damage ,Correction ,Biology ,medicine.disease ,digestive system diseases ,Telomere ,Gene expression profiling ,Oncology ,Hepatocellular carcinoma ,microRNA ,Genetics ,Cancer research ,medicine - Abstract
MicroRNAs expression has been extensively studied in hepatocellular carcinoma but little is known regarding the relationship, if any, with inflammation, production of reactive oxygen species (ROS), host’s repair mechanisms and cell immortalization. This study aimed at assessing the extent of oxidative DNA damage (8-hydroxydeoxyguanosine - 8-OHdG) in different phases of the carcinogenetic process, in relation to DNA repair gene polymorphism, telomeric dysfunction and to the expression of several microRNAs, non-coding genes involved in post-transcriptional regulation, cell proliferation, differentiation and death. Tissue samples obtained either at surgery, [neoplastic (HCC) and adjacent non-cancerous cirrhotic tissues (NCCT)] at percutaneous or laparoscopic biopsy (patients with HCV or HBV-related hepatitis or patients undergoing cholecystectomy) were analysed for 8-OHdG (HPLC-ED), OGG1 (a DNA repair gene) polymorphism (PCR-RFLP), telomerase activity, telomere length (T/S, by RT-PCR), Taqman microRNA assay and Bad/Bax mRNA (RT-PCR). Fifty-eight samples from 29 HCC patients (obtained in both neoplastic and peritumoral tissues), 22 from chronic hepatitis (CH) and 10 controls (cholecystectomy patients - CON) were examined. Eight-OHdG levels were significantly higher in HCC and NCCT than in CH and CON (p=0.001). Telomerase activity was significantly higher in HCC than in the remaining subgroups (p=0.002); conversely T/S was significantly lower in HCC (p=0.05). MiR-199a-b, -195, -122, -92a and −145 were down-regulated in the majority of HCCs while miR-222 was up-regulated. A positive correlation was observed among 8-OHdG levels, disease stage, telomerase activity, OGG1 polymorphisms and ALT/GGT levels. In HCC, miR-92 expression correlated positively with telomerase activity, 8-OHdG levels and Bad/Bax mRNA. The above findings confirm the accumulation, in the progression of chronic liver damage to HCC, of a ROS-mediated oxidative DNA damage, and suggest that this correlates with induction of telomerase activity and, as a novel finding, with over-expression of miR-92, a microRNA that plays a role in both the apoptotic process and in cellular proliferation pathways.
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- 2014
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47. High Risk human papillomavirus E6 induces expression of the histone demethylase KDM2B by repressing miR 146a in human keratinocytes
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Elektra, Peta, Alessandro, Sinigaglia, Valentina, Militello, Grassi, Angela, DI CAMILLO, Barbara, Trevisan, Marta, Palu', Giorgio, and Barzon, Luisa
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- 2014
48. Characterization of a New CDC73 Missense Mutation that Impairs Parafibromin Expression and Nucleolar Localization
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Luisa Barzon, Alessandro Sinigaglia, Barbara Mantelli, Ignazio Castagliuolo, Giorgio Palù, Maurizio Iacobone, Giulia Masi, and Gianmaria Pennelli
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Mutant ,DNA Mutational Analysis ,lcsh:Medicine ,medicine.disease_cause ,Biochemistry ,Spectrum Analysis Techniques ,Molecular Cell Biology ,Basic Cancer Research ,Medicine and Health Sciences ,Missense mutation ,lcsh:Science ,Mutation ,Multidisciplinary ,Microscopy, Confocal ,Reverse Transcriptase Polymerase Chain Reaction ,Autosomal dominant trait ,Cell cycle ,Flow Cytometry ,Immunohistochemistry ,Oncology ,Spectrophotometry ,Cytophotometry ,Immunohistochemical Analysis ,Research Article ,Tumor suppressor gene ,Parafibromin ,Molecular Sequence Data ,Mutation, Missense ,Biology ,Real-Time Polymerase Chain Reaction ,Research and Analysis Methods ,Frameshift mutation ,medicine ,Genetics ,Cancer Genetics ,Humans ,Immunohistochemistry Techniques ,Cell Proliferation ,DNA Primers ,Base Sequence ,Tumor Suppressor Proteins ,lcsh:R ,Biology and Life Sciences ,Proteins ,Sequence Analysis, DNA ,Cell Biology ,Molecular biology ,Histochemistry and Cytochemistry Techniques ,Gene Expression Regulation ,Microscopy, Fluorescence ,Immunologic Techniques ,lcsh:Q ,Gene Function ,Cytometry ,HeLa Cells - Abstract
Mutations of the Cell Division Cycle 73 (CDC73) tumor suppressor gene (previously known as HRPT2), encoding for parafibromin, are associated with the Hyperparathyroidism-Jaw Tumor (HPT-JT) syndrome, an autosomal dominant disease whose clinical manifestations are mainly parathyroid tumors and, less frequently, ossifying fibromas of the jaws, uterine and renal tumors. Most mutations of CDC73 are nonsense or frameshift, while missense mutations are rare and generally affect the N-terminal domain of parafibromin, a region that is still poorly characterized. The aim of this study was to characterize a novel somatic CDC73 missense mutation (Ile60Asn) identified in the mandibular tumor of a HPT-JT patient carrying a germline CDC73 inactivating mutation. Immunostaining of the tumor showed reduced nuclear parafibromin immunoreactivity. Western blotting and confocal microscopy of transfected cells demonstrated that the Ile60Asn mutant parafibromin was less expressed than the wild-type protein and exhibited impaired nucleolar localization. Treatment of transfected cells with translation and proteasome inhibitors demonstrated a decreased stability of the Ile60An mutant, partially due to an increase in proteasomal degradation. Overexpression of the Ile60Asn mutant led to increased cell proliferation and to accumulation in the G2/M phase of cell cycle. Moreover, mutant parafibromin lost the ability to down-regulate c-myc expression. In conclusion, our study shows that a missense mutation in the N-terminus of parafibromin, identified in an ossifying fibroma from a HPT-JT patient, stimulated cell proliferation and impaired parafibromin expression and nucleolar localization, suggesting a relevant role of the N-terminal domain for parafibromin function.
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- 2014
49. Profiling of Expression of Human Papillomavirus-Related Cancer miRNAs in Penile Squamous Cell Carcinomas
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Matteo Fassan, Marina Paola Gardiman, Ambrogio Fassina, Rocco Cappellesso, Giorgio Palù, Elektra Peta, Vincenza Guzzardo, Stella Blandamura, Luisa Barzon, Laura Ventura, Alessandro Sinigaglia, Valentina Militello, and Francesca Simonato
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Nerve Tissue Proteins ,Pathology and Forensic Medicine ,Epigenesis, Genetic ,microRNA ,Carcinoma ,Medicine ,Humans ,Papillomaviridae ,Penile Neoplasms ,Aged ,Aged, 80 and over ,biology ,business.industry ,Gene Expression Profiling ,Papillomavirus Infections ,HPV infection ,virus diseases ,Membrane Proteins ,DNA Methylation ,Middle Aged ,biology.organism_classification ,medicine.disease ,Immunohistochemistry ,female genital diseases and pregnancy complications ,Gene expression profiling ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,DNA methylation ,Carcinoma, Squamous Cell ,Intercellular Signaling Peptides and Proteins ,business ,Immunostaining - Abstract
Penile squamous cell carcinoma (PSCC) is a rare tumor associated with high-risk human papillomavirus (HR-HPV) infection in 30% to 60% of cases. Altered expression of miRNAs has been reported in HPV-related cervical and head and neck cancers, but such data have not been available for PSCC. We analyzed a series of 59 PSCCs and 8 condylomata for presence of HPV infection, for p16 INK4a , Ki-67, and p53 immunohistochemical expression, and for expression of a panel of cellular miRNAs (let-7c, miR-23b, miR-34a, miR-145, miR-146a, miR-196a, and miR-218) involved in HPV-related cancer. HR-HPV DNA (HPV16 in most cases) was detected in 17/59 (29%) PSCCs; all penile condylomata (8/8) were positive for low-risk HPV6 or HPV11. HR-HPV + PSCCs overexpressed p16 INK4a in 88% cases and p53 in 35% of cases, whereas HR-HPV − PSCCs were positive for p16 INK4a and p53 immunostaining in 9% and 44% of cases, respectively. Among the miRNAs investigated, expression of miR-218 was lower in PSCCs with HR-HPV infection and in p53 − cancers. Hypermethylation of the promoter of the SLIT2 gene, which contains miR-218-1 in its intronic region, was frequently observed in PSCCs, mainly in those with low miR-218 expression. Epigenetic silencing of miR-218 is a common feature in HR-HPV + PSCCs and in HR-HPV − PSCCs without immunohistochemical detection of p53.
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- 2014
50. Characterization of human cytomegalovirus microRNA temporal expression profile and target prediction by dynamic expression analysis
- Author
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Marta Trevisan, Carlotta Albonetti, Enrico Lavezzo, Tiziana Sanavia, Alessandro Sinigaglia, Barbara Di Camillo, Giorgio Palù, and Luisa Barzon.
- Published
- 2013
Catalog
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