128 results on '"Alessandro Oggioni"'
Search Results
2. Scientists’ attitudes about citizen science at Long-Term Ecological Research (LTER) sites
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Alba L’Astorina, Cathlyn Davis, Alessandra Pugnetti, Alessandro Campanaro, Alessandro Oggioni, and Caterina Bergami
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citizen science (CS) ,public engagement with science ,survey ,ecological research ,ILTER network ,collaborative research ,Environmental sciences ,GE1-350 - Abstract
A profound transformation, in recent decades, is promoting shifts in the ways ecological science is produced and shared; as such, ecologists are increasingly encouraged to engage in dialogues with multiple stakeholders and in transdisciplinary research. Among the different forms of public engagement, citizen science (CS) has significant potential to support science-society interactions with mutual benefits. While many studies have focused on the experience and motivations of CS volunteers, scarce literature investigating the perspectives of researchers is available. The main purpose of this paper is to better understand scientists’ attitudes about CS in the context of its potential to support outcomes that extent beyond more traditional ones focused on promoting science knowledge and interest. We surveyed the scientific community belonging to the International Long-Term Ecological Research (ILTER) network because ILTER is of interest to multiple stakeholders and occurs over long time scales. Via an online questionnaire, we asked ILTER scientists about their willingness to participate in different types of public engagement, their reasons for participating in CS, the associated barriers, and any impacts of these efforts on them. Our findings show that many ILTER scientists are open to participating in CS for a wide range of reasons; the dominant ones involve deeper public engagement and collaboration. The barriers of greatest concern of these respondents were the lack of institutional support to start and run a CS project and the difficulty of establishing long-term stable relationships with the public. They reported impacts of CS activities on how they pursue their work and acknowledged the benefit of opportunities to learn from the public. The emerging picture from this research is of a community willing and actively involved in many CS projects for both traditional reasons, such as data gathering and public education, and expanded reasons that activate a real two-way cooperation with the public. In the ILTER community, CS may thus become an opportunity to promote and develop partnerships with citizens, helping to advance the science-society interface and to rediscover and enhance the human and social dimension of the scientific work.
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- 2023
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3. Environmental citizen science practices in the ILTER community: Remarks from a case study at global scale
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Caterina Bergami, Alessandro Campanaro, Cathlyn Davis, Alba L’Astorina, Alessandra Pugnetti, and Alessandro Oggioni
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environmental citizen science ,ILTER network ,public engagement with science and technology (PEST) ,questionnaire ,collaborative research ,volunteers’ involvement ,Environmental sciences ,GE1-350 - Abstract
In the last decades, citizen science (CS) has experienced an increasing interest as a practice in which scientists and citizens collaborate to produce new knowledge for science, society and policy. Environmental and ecological sciences are among the most active in proposing CS activities and new models for citizen participation in research. In addition to environmental dimensions, these fields necessarily include social and cultural dimensions to confront the complex local and global environmental challenges. This is particularly evident in the International Long-Term Ecological Research (ILTER) network, where the integration of social sciences has become a recognized priority. ILTER offers a valuable landscape to explore common CS features across a wide range of different cultural and socio-ecological contexts, as well as worldviews of science-society interactions. In 2020, we surveyed scientists working at ILTER sites across the globe to identify key features of CS initiatives in which they are/were involved and the levels of participation of the volunteers. We consider these features in the context of the internationally-developed “Ten Principles of Citizen Science” by examining scientific outcomes and societal/policy impact, type of volunteers’ involvement, and sharing of data/findings and feedbacks and acknowledging volunteers. Our results indicate that the ILTER community demonstrated a good predisposition toward environmentally-focused CS initiatives with diverse scientific questions including biodiversity, water quality, ecosystem services and climate change. Most of the respondents reported that the volunteers were involved mainly in collecting samples or recording data; some other activities, such as dissemination of the project conclusions and discussion and translation of the results into action, were also mentioned. Volunteers were usually trained for these initiatives and acknowledged in peer-reviewed publication, however data from the initiatives were only partially shared openly. We conclude with remarks and suggestions for expanding design and implementation of CS in the ILTER community.
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- 2023
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4. A long-term (1986-2010) phytoplankton dataset from the LTER-Italy site Lake Candia
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Alessandro Oggioni, Delio Ruggiu, Giuseppe Morabito, Alessandra Pugnetti, Karin Sparber, Radiana Cozza, Pierisa Panzani, Teresa Ruffoni, and Martina Austoni
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Darwin Core ,GBIF ,phytoplankton ,LTER-Italy ,Lake Candia ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
In this paper we describe a 25-year (1986-2010) dataset of phytoplankton cell density abundance and biovolume in Lake Candia, a eutrophic, natural, small, and shallow lake located in north-western Italy, with data that are made available through the GBIF repository. The lake belongs to the national (LTER-Italy), European (LTER-Europe) and International (ILTER) long-term ecological research (LTER) networks. Phytoplankton samples were collected approximately monthly at the maximum depth station of the lake (7.7 m) and analysed with the inverted microscope, estimating both the cell density abundance and biovolume of each taxon. The dataset includes 10,120 georeferenced occurrences related to 545 taxa. During this 25-year period, the lake underwent profound modifications mainly related to the lake biomanipulation activities addressed to the management of aquatic macrophyte and to the evolution of the trophic condition. Making this dataset available represents a contribution to the current activities of the LTER networks for defining and reconstructing spatial and temporal dynamics and to identify and compare reliable trends.
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- 2023
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5. The Ecological Observing System of the Adriatic Sea (ECOAdS): structure and perspectives within the main European biodiversity and environmental strategies
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Alessandra Pugnetti, Elisabetta Manea, Ivica Vilibić, Alessandro Sarretta, Lucilla Capotondi, Bruno Cataletto, Elisabeth De Maio, Carlo Franzosini, Ivana Golec, Marco Gottardi, Jelena Kurtović Mrčelić, Hrvoje Mihanovic, Alessandro Oggioni, Grgur Pleslic, Mariangela Ravaioli, Silvia Rova, Andrea Valentini, and Caterina Bergami
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Adriatic Sea ,Ecological Observatory ,Biodiversity ,Science - Abstract
This Policy Brief succinctly presents the Ecological Observing System of the Adriatic Sea (ECOAdS), aimed at integrating the ecological and oceanographic dimensions within the conservation strategy of the Natura 2000 network, and to propose a way to go for its future development and maintenance. After a definition of marine ecological observatories, we describe the current structure of ECOAdS, its key components and potential relevance in relation to the main European strategies for biodiversity and marine observation for the next decade. Finally, we suggest some actions that could be undertaken for the future development of ECOAdS, targeting possible perspectives in different regional, macro-regional, national and European strategic contexts. This Policy Brief is one of the outcomes of the Interreg Italy-Croatia Project ECOSS (ECological Observing System in the Adriatic Sea: oceanographic observations for biodiversity; https://www.italy-croatia.eu/web/ecoss), which had the main purpose to design and carry out the first steps for the establishment of ECOAdS.
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- 2022
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6. An ecosystem-based system of variables to enhance marine species and habitat monitoring and conservation: The Adriatic Natura 2000 case study
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Elisabetta Manea, Caterina Bergami, Alessandra Pugnetti, Fabrizio Gianni, Alessandro Oggioni, Vinko Bandelj, Bruno Cataletto, Grgur Pleslić, and Lucia Bongiorni
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essential variables ,MSFD ,WFD ,natura 2000 ,marine ecological observatory ,transboundary conservation ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Implementing effective marine monitoring to detect and track ecosystem shifts, biodiversity alteration, and habitat loss is one of the most crucial challenges to meet the objectives set out by the Post-2020 Biodiversity Framework and by the United Nations Sustainable Development Goals. The lack of coordinated and harmonized monitoring frameworks at different spatial scales and their weakness in accounting for ecological processes, due to incomplete sets of monitoring variables, strongly hinder the achievement of conservation objectives. Here, we propose an approach to build a coherent ecosystem-based system of monitoring variables for target marine species and habitats. The approach is designed to integrate the existing monitoring frameworks set up by the Water and the Marine Strategy Framework directives, and the Essential Ocean and Biodiversity Variables, with the aim to contribute to their harmonization and implementation. Furthermore, by embracing a holistic vision, it aims to incorporate ecological processes and socio-ecological aspects, considering the benefits of public engagement through citizen science, and of the ecosystem services approach for policies’ implementation. The study stems from the Ecological Observing System of the Adriatic Sea (ECOAdS), which was developed in the framework of the Interreg Italy-Croatia project ECOSS, using as exemplary monitoring test cases two relevant conservation targets for Natura 2000 sites of the Adriatic Sea, the common bottlenose dolphin and seagrass meadows. We test the potential of this approach in guiding the prioritization of monitoring variables under ecosystem-based criteria, and provide insights into the benefits delivered by an integrated system of observatories’ networks and monitoring frameworks to support marine conservation at both local and regional scales. The proposed approach can be transferred to other contexts and scales to help build a common knowledge and monitoring framework for conservation and management strategies, saving costs by relying on available resources and on consolidated and long-lasting approaches that might converge towards global initiatives.
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- 2022
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7. Enabling the Reuse of Long-Term Marine Biological Observations in Essential Variables Frameworks Through a Practical Approach
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Martina Zilioli, Caterina Bergami, Paola Carrara, Cristiano Fugazza, Alessandro Oggioni, Alessandra Pugnetti, and Paolo Tagliolato Acquaviva d’Aragona
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marine biodiviersity observation ,global data synthesis ,data management ,essential variables ,Long-Term Ecological Research ,research infrastructure ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Essential Biodiversity Variables (EBVs) and Biological and Ecosystem Essential Ocean Variables (BioEco EOVs) are two cooperative conceptual frameworks which help harmonize and process multi-source marine biodiversity observations into robust indexes, in order to measure progress toward policy conservation goals. Long-term monitoring networks are encouraged to contribute to these frameworks by mobilizing historical times series which are suitable for detecting impacts of management policies. In this paper, we identify specific recommendations for increasing reuse in the EV frameworks of the biodiversity historical data collected and maintained by the Gulf of Venice (GOV) site, i.e., the monitoring facility that is selected as case study in the Italian Long-Term Ecological Research network (LTER-Italy). The recommendations are obtained through a practical approach comprising two phases. In the first phase, a literature review helps extract the guidelines for implementing the principles representing the most recent attempt to unify management of EBV and BioEco EOV data, i.e., Benson’s tenets. In the second phase, we compare the guidelines to the data management practices enacted by the selected monitoring site in order to recommend curation interventions. The outputs of the analysis are discussed in order to verify if the approach and the recommendations are general enough to be replicated in the marine component of monitoring networks to coordinate the LTER data contribution to the EV frameworks.
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- 2021
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8. A transnational marine ecological observatory in the Adriatic Sea to harmonize a fragmented approach to monitoring and conservation
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Elisabetta Manea, Caterina Bergami, Lucia Bongiorni, Lucilla Capotondi, Elisabeth De Maio, Alessandro Oggioni, and Alessandra Pugnetti
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marine ecological observatories ,transboundary coordination ,ECOAdS ,Adriatic Sea ,ECOSS project ,Ecology ,QH540-549.5 - Abstract
The design and establishment of Marine Ecological Observatories (MEOs) are fostered at the European level. MEOs should adopt a holistic view, integrating and harmonizing long-term oceanographic and ecological research and monitoring, and increasing conservation strategies effectiveness according to the ecological connectivity concept. The data and knowledge collected and made available through MEOs should inform policies dealing with conservation and management of the marine environment. We present and discuss these issues in the Adriatic Sea context, where the transnational ecological observatory “ECOAdS” is under development in the framework of the Interreg Italy-Croatia project ECOSS (Observing System in the Adriatic Sea: oceanographic observations for biodiversity), which aims to support Natura 2000 network implementation and cross-border coordination of multiple monitoring initiatives. We analyse the main EU directives that deal with marine conservation, notably the Habitats and Birds directives, the Water Framework Directive, and the Marine Strategy Framework Directive, as they are the primary instruments that can guide the development of the observatory while strengthening cooperation at the basin scale. We bring out the synergies and discrepancies among these legal instruments, and build on them ECOAdS as a monitoring platform that may respond and contribute to their requirements, boosting the synergies and overcoming the weaknesses. Finally, we provide some hints for the further development of this transnational MEO as a collector of the existing monitoring efforts aimed at harmonizing their approaches and incorporating the ecological connectivity to foster an ecosystem-based approach to conservation management.
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- 2021
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9. Opening Marine Long-Term Ecological Science: Lesson Learned From the LTER-Italy Site Northern Adriatic Sea
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Annalisa Minelli, Alessandro Sarretta, Alessandro Oggioni, Caterina Bergami, Mauro Bastianini, Fabrizio Bernardi Aubry, Elisa Camatti, and Alessandra Pugnetti
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LTER-Italy ,EcoNAOS ,Northern Adriatic Sea ,Open Science ,open data ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
This work presents a practical case study of the Open Science principles applied to the valorization of a long-term marine dataset collected in the Northern Adriatic Sea, one of the Long-Term Ecological Research (LTER) sites of the LTER-Italy network. The dataset covers a temporal range of 50 years (1965–2015), and it is composed of abiotic, and phyto- and zooplankton data, for a total of 21 parameters. The case study involved many actions, which will be described here, distinguishing between the ones affecting the whole research project workflow and those acting more specifically on the dataset. We evaluate strengths, weaknesses, and possible improvements for each action. The present study pointed out that, despite the initial and still some remaining mistrust, opening research projects is more than a best practice. It is (i) important because it improves research transparency (increasing researchers’ credibility, replicability of science, and products reuse), (ii) required by many international initiatives and regulations, and (iii) enriching because it encourages cooperation between scientists across different fields and laboratories.
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- 2021
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10. Feeding Essential Biodiversity Variables (EBVs): actual and potential contributions from LTER-Italy
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Martina Zilioli, Alessandro Oggioni, Paolo Tagliolato, Alessandra Pugnetti, and Paola Carrara
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Ecology ,QH540-549.5 ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
The conceptual framework of Essential Biodiversity Variables (EBVs) aims to capture the major dimensions of biodiversity change by structuring biodiversity monitoring and by ruling data collection amongst different providers. Amongst the research infrastructures adopting and implementing the EBV framework, LTER-Europe - the European node of ILTER (International Long-Term Ecological Research) - follows the approach to compare site-based biodiversity observations within and across its networks. However, a synoptic overview of their contributions with EBVs-relevant data is still missing, since data are not made available for several reasons. In this paper, we assess the capacity of LTER-Italy, one of the richest and heterogeneous networks of LTER sites in Europe, to provide data to “Species Distribution” and “Species Abundance” EBVs without inspecting and downloading their contents. To this aim, we mine the EBVs information which is publicly structured and shared by LTER site managers through DEIMS-SDR, the LTER-Europe online metadata repository. We classify the sites according to two types of contributions: (i) the actual contribution, based on metadata of datasets and (ii) the potential contribution, based on metadata of sites. Through these assessments, we investigate if LTER-Italy monitoring activities can provide EBVs measures and which sites currently provide datasets. By comparing the two contributions, we pinpoint the factors hampering the accessibility of LTER-Italy data and suggest solutions to increase the discoverability and reusability of LTER-Italy EBVs measurements. The research provides the first overview of EBVs monitored in LTER-Italy and the corresponding data management practices, as well as an evaluation of the interoperability of this network with respect to other research organisations for legal and technical aspects.
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- 2019
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11. The TeaComposition Initiative: Unleashing the power of international collaboration to understand litter decomposition
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Ika Djukic, Carlos A. Guerra, Fernando T. Maestre, Frank Hagedorn, Alessandro Oggioni, Caterina Bergami, Barbara Magagna, TaeOh Kwon, Hideaki Shibata, Nico Eisenhauer, Guillaume Patoine, Michael Bierbaumer, Sebastian Kepfer-Rojas, Inger Kappel Schmidt, Klaus Steenberg Larsen, Claus Beier, Björn Berg, Kris Verheyen, Stacey M. Trevathan-Tackett, Peter I. Macreadie, and TeaComposition initiative
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Litter Carbon Turnover ,Tea bag ,Essential variable ,Networking the Networks ,Standard Observations ,Microbiology ,QR1-502 ,Zoology ,QL1-991 - Abstract
Collected harmonized data on global litter decomposition are of great relevance for scientists, policymakers, and for education of the next generation of researchers and environmental managers. Here we describe the TeaComposition initiative, a global and open research collaborative network to study organic matter decomposition in a standardized way allowing comparison of decomposition rate and carbon turnover across global and regional gradients of ecosystems, climate, soils etc. The TeaComposition initiative today involves 570 terrestrial and 300 aquatic ecosystems from nine biomes worldwide. Further, we describe how to get involved in the TeaComposition initiative by (a) implementing the standard protocol within your study site, (b) joining task forces in data analyses, syntheses and modelling efforts, (c) using collected data and samples for further analyses through joint projects, (d) using collected data for graduate seminars, and (e) strengthening synergies between biogeochemical research and a wide range of stakeholders. These collaborative efforts within/emerging from the TeaComposition initiative, thereby, will leverage our understanding on litter decomposition at the global scale and strengthen global collaborations essential for addressing grand scientific challenges in a rapidly changing world.
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- 2021
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12. The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory
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Annalisa Minelli, Alessandro Oggioni, Alessandra Pugnetti, Alessandro Sarretta, Mauro Bastianini, Caterina Bergami, Fabrizio Bernardi Aubry, Elisa Camatti, Tiziano Scovacricchi, and Giorgio Socal
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LTER-Italy ,Northern Adriatic Sea ,Open Science ,Science - Published
- 2018
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13. Fostering Data Sharing in Multidisciplinary Research Communities: A Case Study in the Geospatial Domain
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Martina Zilioli, Simone Lanucara, Alessandro Oggioni, Cristiano Fugazza, and Paola Carrara
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geospatial data ,user support systems ,user profiles ,communication facilities ,Science (General) ,Q1-390 - Abstract
The sharing of research data allows for information reuse and knowledge advancement but its realization is often a challenge and seldom successful in practice. We propose a workflow for the design of a User Support System (USS) aimed at tutoring research groups in data sharing by considering their social and domain backgrounds. Our engagement approach focuses on multidisciplinary geospatial research, particularly when interoperable data sharing is required. Specifically, we first characterize the research community on the basis of the behavior and competences in data management by its groups and then target the needs of the latter with specific facilities. We address for the first time in literature the issue of modeling research groups as targets of the USS and provide a roadmap to standardize USS activities across different communities. We describe the implementation of the workflow in the context of an Italian research project and we assess the impact of the USS in terms of increase in the number of nodes and resources in the project’s data infrastructure, and of fulfilment of the expectations by the research groups.
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- 2019
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14. EDI – A Template-Driven Metadata Editor for Research Data
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Fabio Pavesi, Anna Basoni, Cristiano Fugazza, Stefano Menegon, Alessandro Oggioni, Monica Pepe, Paolo Tagliolato, and Paola Carrara
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form generator, metadata editing, INSPIRE, OGC, semantic enrichment, XML ,Computer software ,QA76.75-76.765 - Abstract
EDI is a general purpose, template-driven metadata editor for creating XML-based descriptions. Originally aimed at defining rich and standard metadata for geospatial resources, It can be easily customised in order to comply with a broad range of schemata and domains. EDI creates HTML5 [9] metadata forms with advanced assisted editing capabilities and compiles them into XML files. The examples included in the distribution implement profiles of the ISO 19139 standard for geographic information [14], such as core INSPIRE metadata [10], as well as the OGC [8] standard for sensor description, SensorML [11]. Templates (the blueprints for a specific metadata format) drive form behaviour by element data types and provide advanced features like codelists1 underlying combo boxes or autocompletion functionalities. Virtually, the editing of any metadata format can be supported by creating a specific template. EDI is stored on GitHub at https://github.com/SP7-Ritmare/EDI-NG_client and https://github.com/SP7-Ritmare/EDI-NG_server.
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- 2016
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15. A geographic distribution data set of biodiversity in Italian freshwaters
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Angela Boggero, Cataldo Pierri, Renate Alber, Martina Austoni, Enrico Barbone, Luca Bartolozzi, Isabella Bertani, Alessandro Campanaro, Antonella Cattaneo, Fabio Cianferoni, Paolo Colangelo, Giuseppe Corriero, Ambrosius Martin Dorr, A. Concetta Elia, G. Francesco Ficetola, Diego Fontaneto, Elda Gaino, Enzo Goretti, Lyudmila Kamburska, Gianandrea La Porta, Rosaria Lauceri, Massimo Lorenzoni, Alessandro Ludovisi, Marina Manca, Giuseppe Morabito, Francesco Nonnis Marzano, Alessandro Oggioni, Nicoletta Riccardi, Giampaolo Rossetti, Paolo Tagliolato, Bertha Thaler, Nicola Ungaro, Pietro Volta, Silvia Zaupa, Ilaria Rosati, Nicola Fiore, Alberto Basset, and Aldo Marchetto
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artificial habitats ,freshwater biota ,lentic waters ,LifeWatch ,lotic waters ,natural habitats ,reference collection ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
We present a data set on the biodiversity of Italian freshwaters, including lakeshores and riverbanks of natural (N=379: springs, streams and lakes) and artificial (N=11: fountains) sites. The data set belongs partly to the Italian Long Term Ecological Research network (LTER-Italy) and partly to LifeWatch, the European e-Science infrastructure for biodiversity and ecosystem research. The data included cover a time period corresponding to the last fifty years (1962-2014). They span a large number of taxa from prokaryotes and unicellular eukaryotes to vertebrates and plants, including taxa linked to the aquatic habitat in at least part of their life cycles (like immature stages of insects, amphibians, birds and vascular plants). The data set consists of 6463 occurrence data and distribution records for 1738 species. The complete data set is available in csv file format via the LifeWatch Service Centre.
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- 2016
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16. Design of a Knowledge Hub of Heterogeneous Multisource Documents to support Public Authorities.
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Paolo Tagliolato Acquaviva d'Aragona, Lorenza Babbini, Gloria Bordogna, Alessandro Lotti, Annalisa Minelli, and Alessandro Oggioni
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- 2024
17. Raising Semantics-Awareness in Geospatial Metadata Management
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Cristiano Fugazza, Monica Pepe, Alessandro Oggioni, Paolo Tagliolato, and Paola Carrara
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Spatial Data Infrastructures ,geospatial metadata ,RDF ,semantics ,Geography (General) ,G1-922 - Abstract
Geospatial metadata are often encoded in formats that either are not aimed at efficient retrieval of resources or are plainly outdated. Particularly, the quantum leap represented by the Semantic Web did not induce so far a consistent, interlinked baseline in the geospatial domain. Datasets, scientific literature related to them, and ultimately the researchers behind these products are only loosely connected; the corresponding metadata intelligible only to humans, duplicated in different systems, seldom consistently. We address these issues by relating metadata items to resources that represent keywords, institutes, researchers, toponyms, and virtually any RDF data structure made available over the Web via SPARQL endpoints. Essentially, our methodology fosters delegated metadata management as the entities referred to in metadata are independent, decentralized data structures with their own life cycle. Our example implementation of delegated metadata envisages: (i) editing via customizable web-based forms (including injection of semantic information); (ii) encoding of records in any XML metadata schema; and (iii) translation into RDF. Among the semantics-aware features that this practice enables, we present a worked-out example focusing on automatic update of metadata descriptions. Our approach, demonstrated in the context of INSPIRE metadata (the ISO 19115/19119 profile eliciting integration of European geospatial resources) is also applicable to a broad range of metadata standards, including non-geospatial ones.
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- 2018
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18. A biogeochemical model of Lake Pusiano (North Italy) and its use in the predictability of phytoplankton blooms: first preliminary results
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Alessandro OGGIONI, Elena LEGNANI, Jörg IMBERGER, Giuseppe MORABITO, Gianni TARTARI, and Diego COPETTI
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biogeochemical models, Planktothrix rubescens, Lake Pusiano ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
This study reports the first preliminary results of the DYRESM-CAEDYM model application to a mid size sub-alpine lake (Lake Pusiano North Italy). The in-lake modelling is a part of a more general project called Pusiano Integrated Lake/Catchment project (PILE) whose final goal is to understand the hydrological and trophic relationship between lake and catchment, supporting the restoration plan of the lake through field data analysis and numerical models. DYRESM is a 1D-3D hydrodynamics model for predicting the vertical profile of temperature, salinity and density. CAEDYM is multi-component ecological model, used here as a phytoplankton-zooplankton processes based model, which includes algorithms to simulate the nutrient cycles within the water column as well as the air-water gas exchanges and the water-sediments fluxes. The first results of the hydrodynamics simulations underline the capability of the model to accurately simulate the surface temperature seasonal trend and the thermal gradient whereas, during summer stratification, the model underestimates the bottom temperature of around 2 °C. The ecological model describes the epilimnetic reactive phosphorus (PO4) depletion (due to the phytoplankton uptake) and the increase in PO4 concentrations in the deepest layers of the lake (due to the mineralization processes and the sediments release). In terms of phytoplankton dynamics the model accounts for the Planktothrix rubescens dominance during the whole season, whereas it seems to underestimate the peak in primary production related to both the simulated algal groups (P. rubescens and the rest of the other species aggregated in a single class). The future aims of the project are to complete the model parameterization and to connect the in-lake and the catchment modelling in order to gain an integrated view of the lake-catchment ecosystem as well as to develop a three dimensional model of the lake.
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- 2006
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19. Planktothrix rubescens’ seasonal dynamics and vertical distribution in Lake Pusiano (North Italy)
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Giuseppe MORABITO, Maria Teresa PALUMBO, Alessandro OGGIONI, Gianni TARTARI, Diego COPETTI, and Elena LEGNANI
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Planktothrix rubescens, seasonal dynamics, Lake Pusiano ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
The limnological evolution of Lake Pusiano followed, starting 1970s, an increasing eutrophication process, attaining the maximum trophic level at the mid 1980s, when the lake reached an hypertrophic condition (around 200 μg P l-1 at winter overturn). Between mid 1980s and the beginning of this century, the phosphorus concentrations continuously decreased, until reaching TP values close to 60 μg P l-1. Despite this improvement in trophic conditions, since 1994 the cyanobacteria contribution increased: noticeable was a very intense bloom of Planktothrix rubescens, occurred during autumn 2001. The following year, when we carried out this research, this filamentous cyanobacterium strongly dominated the phytoplankton population for the whole seasonal cycle. However, after an intense flood occurred in November the P. rubescens population decreased again. This paper aims at describing the seasonal dynamics of the cyanobacterium P. rubescens in Lake Pusiano (North Italy) during year 2002, pointing out the environmental factors which favoured its large dominance during the whole seasonal cycle: particular attention will be paid to the role played by the physical factors in promoting the growth of P. rubescens, despite the nutrient reduction. Our experimental evidences suggest the involment of mechanisms already observed in other European lakes, such as the establishment of a metalimnetic niche. Moreover, our data point out a high sensitivity of this environment to the changes of the hydrological regime, which probably affect the seasonal phytoplankton dynamics.
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- 2005
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20. A preliminary evaluation of lake morphometric traits influence on the maximum growing depth of macrophytes
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Mattia M. Azzella, Rossano Bolpagni, and Alessandro Oggioni
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Submerged aquatic plants ,maximum growing depth ,Secchi disk ,lake area ,littoral slope ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
Underwater light regime is widely considered the principal determinant of aquatic plant depth distribution. The majority of previous studies dealing with macrophytes in lakes have singled out Secchi disk transparency (SD) values as the key empirical proxy to explain the maximum depth of macrophyte colonization (Zc). Few studies have investigated the role played by lake morphometry in structuring macrophyte beds. Using a balanced dataset including 20 Italian lakes (10 shallow and 10 deep lakes), we analysed transparency and lake morphometric traits to investigate their possible effects on Zc. Our results demonstrate that lake area plays a significant role, and confirm a direct influence of SD values on Zc. Considering lakes with an equal degree of transparency, smaller lakes may yield a lower Zc than larger ones. Morphology has a great influence on lake ecological characteristics especially on water thermal conditions and mixing depth. Based on our data, we argue that the thermal stratification plays a non negligible role in explaining macrophytes zonation, due to its influence on macrophytes life cycles and phytoplankton vertical distribution. Therefore, the present data suggest the need to enhance and refine our knowledge about the relationship between aquatic plants distribution and lake thermal conditions to better model the response of macrophytes to climate change and eutrophication.
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- 2014
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21. Describing Geospatial Assets in the Web of Data: A Metadata Management Scenario
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Cristiano Fugazza, Monica Pepe, Alessandro Oggioni, Paolo Tagliolato, Fabio Pavesi, and Paola Carrara
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spatial data infrastructures ,geospatial metadata ,RDF ,semantics ,editor customisation ,Geography (General) ,G1-922 - Abstract
Metadata management is an essential enabling factor for geospatial assets because discovery, retrieval, and actual usage of the latter are tightly bound to the quality of these descriptions. Unfortunately, the multi-faceted landscape of metadata formats, requirements, and conventions makes it difficult to identify editing tools that can be easily tailored to the specificities of a given project, workgroup, and Community of Practice. Our solution is a template-driven metadata editing tool that can be customised to any XML-based schema. Its output is constituted by standards-compliant metadata records that also have a semantics-aware counterpart eliciting novel exploitation techniques. Moreover, external data sources can easily be plugged in to provide autocompletion functionalities on the basis of the data structures made available on the Web of Data. Beside presenting the essentials on customisation of the editor by means of two use cases, we extend the methodology to the whole life cycle of geospatial metadata. We demonstrate the novel capabilities enabled by RDF-based metadata representation with respect to traditional metadata management in the geospatial domain.
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- 2016
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22. Optical remote sensing of lakes: an overview on Lake Maggiore
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Claudia Giardino, Mariano Bresciani, Daniela Stroppiana, Alessandro Oggioni, and Giuseppe Morabito
- Subjects
Earth observation, MERIS, lakes, water quality, surface temperature. ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
Optical satellite remote sensing represents an opportunity to integrate traditional methods for assessing water quality of lakes: strengths of remote sensing methods are the good spatial and temporal coverage, the possibility to monitor many lakes simultaneously and the reduced costs. In this work we present an overview of optical remote sensing techniques applied to lake water monitoring. Then, examples of applications focused on lake Maggiore, the second largest lake in Italy are discussed by presenting the temporal trend of chlorophyll-a (chl-a), suspended particulate matter (SPM), coloured dissolved organic matter (CDOM) and the z90 signal depth (the latter indicating the water depth from which 90% of the reflected light comes from) as estimated from the images acquired by the Medium Resolution Imaging Spectrometer (MERIS) in the pelagic area of the lake from 2003 to 2011. Concerning the chl-a trend, the results are in agreement with the concentration values measured during field surveys, confirming the good status of lake Maggiore, although occasional events of water deterioration were observed (e.g., an average increase of chl-a concentration, with a decrease of transparency, as a consequence of an anomalous phytoplankton occurred in summer 2011). A series of MERIS-derived maps (summer period 2011) of the z90 signal are also analysed in order to show the spatial variability of lake waters, which on average were clearer in the central pelagic zones. We expect that the recently launched (e.g., Landsat-8) and the future satellite missions (e.g., Sentinel-3) carrying sensors with improved spectral and spatial resolution are going to lead to a larger use of remote sensing for the assessment and monitoring of water quality parameters, by also allowing further applications (e.g., classification of phytoplankton functional types) to be developed.
- Published
- 2013
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- View/download PDF
23. Charophytes of the lake Garda (Northern Italy): a preliminary assessment of diversity and distribution
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Rossano Bolpagni, Eugenia Bettoni, Francesco Bonomi, Mariano Bresciani, Ketty Caraffini, Silvia Costaraoss, Federica Giacomazzi, Catia Monauni, Paola Montanari, Maria Cristina Mosconi, Alessandro Oggioni, Giovanna Pellegrini, and Chiara Zampieri
- Subjects
macroalgae, stoneworts, subalpine deep lakes, diversity hotspot, conservation value. ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
Charophytes (stoneworts and bassweeds) are a typical macrophytic component of inland water ecosystems. Well-developed submerged meadows of charophytes are expression of clear water and rather low phytoplankton concentrations. Consequently, among aquatic macroscopic primary producers, charophytes are one of the most threatened groups being very sensitive to phosphorous availability, turbidity and water level perturbations. Accordingly, charophytes have been suffering a massive diversity loss worldwide over the last century, mainly because of human-induced pressures. During summer 2011, detailed field surveys were carried out with the main purpose of filling knowledge gaps concerning aquatic flora and vegetation of the lake Garda – the largest lake in Italy and one of the deepest in Europe. Along randomly selected transects, floristic data were collected following standard procedures, as imposed by the Water Framework Directive. Overall, 12 different species of charophytes were recorded, which accounts for 36% of total Italian charophytes and 19% of European species. The most diffuse species were Chara globularis and C. intermedia; whereas, the most interesting taxa were Chara polyacantha and Nitella hyalina, two species with narrow distribution in Italy. Overall in the lake Garda, dense stands of charophytes covered almost homogeneously the littoral sectors at a water depth between 3 and 12 m. The deepest species was C. globularis, which reached a maximum depth of colonisation of about 17.5 m. Charophytes represent a major element among the primary producers in the lake Garda. The high local charophyte diversity and the rather wide most colonised areas (~1000-1200 ha) confirm that the lake Garda is an important reserve for many rare and threatened charophytes. For the first time, these results highlight the key role of the lake Garda for charophyte diversity at a national and European level.
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- 2013
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24. Retrospective assessment of macrophytic communities in southern Lake Garda (Italy) from in situ and MIVIS (Multispectral Infrared and Visible Imaging Spectrometer) data
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Claudia Giardino, Alessandro Oggioni, Rossano Bolpagni, Mariano Bresciani, and Federica Braga
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macrophytes, hyperspectral sensor, change detection, ecological determinants, Sirmione Peninsula. ,Geography. Anthropology. Recreation ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
In situ and hyperspectral MIVIS (Multispectral Infrared and Visible Imaging Spectrometer) images acquired over a period of 13 years are used to assess changes in macrophyte colonization patterns in the coastal zones of the Sirmione Peninsula in the southern part of Lake Garda (Italy). In situ data (abundance, cover density and diversity of macrophyte communities) and MIVIS-derived maps of colonized substrates are analyzed by considering the variability of the main hydrological and physicochemical variables in order to indicate the main factors that explain the spatiotemporal variability of macrophyte communities. The results show a considerable modification in terms of macrophyte structural complexity and colonized areas. Almost 98% of macrophyte meadows (in particular communities with a density of over 70%) are lost and subsequently replaced by moderate to extremely rare communities with density from 10% to 40%. Well-established submerged macrophytes are replaced by de-structured communities characterized by moderate to scarce density: on average lower than 30%. The study indicates that macrophyte distribution along the littoral zone of the Sirmione Peninsula is certainly linked to water transparency and water level fluctuation. The results also indicate that the worsening of eutrophication may be associated with the gradual disappearance of macrophyte meadows, but may also be accelerated by herbivorous aquatic birds grazing there. Lastly, the increasing frequency and number of catamaran tours could be considered a threat for the stability of these valuable communities.
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- 2012
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- View/download PDF
25. A Practical Workflow for an Open Scientific Lifecycle Project: EcoNAOS.
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Annalisa Minelli, Alessandro Sarretta, Alessandro Oggioni, Caterina Bergami, and Alessandra Pugnetti
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- 2019
- Full Text
- View/download PDF
26. Interoperable Sharing and Visualization of Geological Data and Instruments: A Proof of Concept.
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Simone Lanucara, Alessandro Oggioni, Giuseppe Modica, and Paola Carrara
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- 2017
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27. RITMARE: Semantics-aware Harmonisation of Data in Italian Marine Research.
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Cristiano Fugazza, Anna Basoni, Stefano Menegon, Alessandro Oggioni, Fabio Pavesi, Monica Pepe, Alessandro Sarretta, and Paola Carrara
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- 2014
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28. The RITMARE Starter Kit - Bottom-up Capacity Building for Geospatial Data Providers.
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Cristiano Fugazza, Stefano Menegon, Monica Pepe, Alessandro Oggioni, and Paola Carrara
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- 2014
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29. A (Near) Real-time Validation and Standardization System Tested for MAMBO1 Meteo-marine Fixed Station.
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Elena Partescano, Alessandra Giorgetti, Caterina Fanara, Alessandro Crise, Alessandro Oggioni, Alberto Brosich, and Paola Carrara
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- 2014
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30. Sensing Real-time Observatories in Marine Sites - A Proof-of-Concept.
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Alessandro Oggioni, Mauro Bastianini, Paola Carrara, Tiziano Minuzzo, and Fabio Pavesi
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- 2014
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31. A Holistic, Semantics-aware Approach to Spatial Data Infrastructures.
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Cristiano Fugazza, Monica Pepe, Alessandro Oggioni, Fabio Pavesi, and Paola Carrara
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- 2014
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32. Monitoring of Environmental Status through Long Term Series: Data Management System in the EnvEurope Project.
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Alessandro Oggioni, Paola Carrara, Tomás Kliment, Johannes Peterseil, and Herbert Schentz
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- 2012
33. The construction of the eLTER Pan-European research infrastructure to support multidisciplinary environmental data integration and analysis
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John Watkins, Johannes Peterseil, Alessandro Oggioni, and Vladan Minic
- Abstract
One of the major goals of the upcoming European integrated Long-Term Ecosystem critical zone and socio-ecological Research Infrastructure (eLTER RI) is to provide reliable and quality-controlled long-term environmental data from various disciplines for scientific analysis as well as the assessment of environmental policy impacts. For this purpose, eLTER has been designing and piloting a federated data infrastructure for integration and dissemination of a broad range of in situ observations and related data.Implementing such a pan-European environmental data infrastructure is a lengthy and complex process driven by user needs, shareholder requirements and general service and technology best practises. The European LTER community has laid the foundations of this eLTER Information System. For further improvements, user needs have recently been collected by (a) targeted interviews with selected stakeholders to identify requirements, (b) workshops mapping requirements to potential RI services, and (c) analysis work for designing the RI service portfolio for. The requirements collections are used to derive functional (i.e. the behaviour of essential features of the system) and non-functional (i.e. the general characteristics of the system) requirements for the IT infrastructure and services. These collected requirements revolve around the development of workflows for the ingestion, curation and publication of data objects including the creation, harvesting, discovery and visualisation of metadata as well as providing means to support the analysis of these datasets and communicating study results.Considering that downstream analyses of data from both eLTER and other RIs are a key part of the RI´s scope the design includes virtual collaborative environments where different data and analyses can be brought together and results shared with FAIR principles as the default for research practice. The eLTER RI will take advantage of data stored in existing partner data systems, harmonised by a central discovery portal and federated data access components providing a common information management infrastructure for bridging across environmental RIs.This presentation will provide an overview of the current stage of the eLTER RI developments as well as its major components, provide an outlook for future developments and discuss the technical and scientific challenges of building the eLTER RI for interdisciplinary data sharing.
- Published
- 2022
34. Deliverable D4.1 - Workflow for retrieval and harmonisation of legacy data
- Author
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Johannes Peterseil 1, Ika Djukic 1, Alessandro Oggioni 2, Martina Zilioli 2, Paolo Tagliolato 2, Will Bolton 3, Christoph Wohner 1, Carmela Marangi 2, Christian Poppe 4, Antonello Provenzale 2, Alice Baronetti 2, Angelica Parisi 2, Marie-Noëlle Pons 5, and 6
- Subjects
eLTER-Plus - Abstract
Progress in understanding, managing, and securing current and future ecosystem functions and services is challenged by fragmented and dispersed ecosystem research. As the topic is often approached using narrow disciplinary perspectives, a holistic understanding of complex eco- and socio-ecological systems is hampered and prevented. The emerging European Long-Term Ecosystem, critical zone and socio-ecological systems Research Infrastructure (eLTER) aims to overcome this challenge by addressing this issue in the ecosystem and biodiversity domain and thereby closing this gap in the European RI landscape. With its concept of the 'Information Clusters' eLTER aims to provide a framework to lower the barrier to information access and exchange. The main idea behind the concept is to simplify the harvesting and user uptake of data from multiple information sources, facilitating the integration with eLTER data by making use of existing services, like Copernicus or statistical information. The selection of sources and content of relevant data layers is the result of an internal discussion where the Research Challenges (RC) play the main role by identifying the current requirements for environmental research and the ensuing demand for external data. The overarching framework of the eLTER Standard Observations informs this process. In order to achieve the implementation of 'Information Clusters', three different data sources have been identified to complement eLTER observations and analysis: (a) in-situ legacy and third party data, (b) data from official statistics, and (c) remote sensing data and products. The activities described in the report focus on the collection and exemplary retrieval of relevant in-situ legacy data, which we identified as complementary data sources and could play an important role within the planned eLTER data analysis workflows. This is relevant to (a) get additional data for data analysis or visualisation, (b) retrieve data from eLTER sites provided by national level catalogues, and (c) retrieve data from eLTER sites provided to other relevant RIs or monitoring networks. The aim of task 4.1 was to develop and test workflows for access and basic level harmonisation of relevant in-situ data sources on global, continental and national scale. We focused on data requirements defined both by the RC addressed in the eLTER PLUS project as well as the needs for supporting the implementation of data flows defined by the eLTER SOs. We identified 176 legacy and third party data sources which could be assigned to a respective eLTER SO and which sufficiently cover each component of the Ecological Integrity concept. Based on a generic workflow described in the report we tested through demonstrators exemplary data extraction workflows being of relevance in the project context. This demonstrators focused on: (a) retrieve occurrence biodiversity data based on API access, (b) retrieve harmonised site gas flux observation data based on downloads, (c) retrieve data from E-OBS historic data (Copernicus Climate Change Service, 2020) to calculate climate diagrams for sites, (d) retrieve data from gridded and modelled data (e.g. E-OBS) based on the site extent, and (e) retrieve earth observation data products based on site extent. It could be shown that the selected workflows are, at least on a prototype level, operational and are useful for the eLTER PLUS users. We applied a co-design process including the respective RC leads and Science Case (SC) contributors in the design and implementation phase on a regular basis. However, eLTER needs to decide if eLTER Information Clusters focus on on-demand services for extracting information sources or pre-calculated datasets. The results of the work done in task 4.1 provide input to the design and architecture of the extended eLTER Information System led by WP11 and the further definition of workflows towards the eLTER Standard Data Products led by WP10. The report summarises the work done with respect to define and prototype workflows for the retrieval and harmonisation of legacy data. It specifically focuses on priority variables defined by the eLTER SO and aims to support Research Challenge related Science Cases at both, site and network scale. The first section describes the context of the work done, also in relation to the 'Information Clusters' concept, which aims to enhance findability and accessibility of relevant data sources in the eLTER context. The second section lists identified relevant data sources relevant in this context and provides demonstrators for data retrieval and harmonisation in the third part. We finally discuss and provide recommendations for the eLTER Information Clusters that focus on thematic prioritisation, structural and legal interoperability as well as outline next steps for the implementation. The annexes provide detailed information shown in the report only in aggregated format.
- Published
- 2022
35. Enabling the Reuse of Long-Term Marine Biological Observations in Essential Variables Frameworks Through a Practical Approach
- Author
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Caterina Bergami, Paolo Tagliolato Acquaviva d’Aragona, Martina Zilioli, Alessandra Pugnetti, Paola Carrara, Cristiano Fugazza, and Alessandro Oggioni
- Subjects
Long-Term Ecological Research ,Process management ,Computer science ,Process (engineering) ,Data management ,Science ,global data synthesis ,Ocean Engineering ,LTER ,Aquatic Science ,Reuse ,QH1-199.5 ,Oceanography ,Order (exchange) ,Component (UML) ,research infrastructure ,Essential Biodiversity Variables ,Gulf of Venice (GOV) ,Water Science and Technology ,Global and Planetary Change ,Measure (data warehouse) ,business.industry ,Italian Long-Term Ecological Research network ,General. Including nature conservation, geographical distribution ,marine biodiviersity observation ,Term (time) ,Conceptual framework ,essential variables ,Biological and Ecosystem Essential Ocean Variables ,data management ,business - Abstract
Essential Biodiversity Variables (EBVs) and Biological and Ecosystem Essential Ocean Variables (BioEco EOVs) are two cooperative conceptual frameworks which help harmonize and process multi-source marine biodiversity observations into robust indexes, in order to measure progress toward policy conservation goals. Long-term monitoring networks are encouraged to contribute to these frameworks by mobilizing historical times series which are suitable for detecting impacts of management policies. In this paper, we identify specific recommendations for increasing reuse in the EV frameworks of the biodiversity historical data collected and maintained by the Gulf of Venice (GOV) site, i.e., the monitoring facility that is selected as case study in the Italian Long-Term Ecological Research network (LTER-Italy). The recommendations are obtained through a practical approach comprising two phases. In the first phase, a literature review helps extract the guidelines for implementing the principles representing the most recent attempt to unify management of EBV and BioEco EOV data, i.e., Benson’s tenets. In the second phase, we compare the guidelines to the data management practices enacted by the selected monitoring site in order to recommend curation interventions. The outputs of the analysis are discussed in order to verify if the approach and the recommendations are general enough to be replicated in the marine component of monitoring networks to coordinate the LTER data contribution to the EV frameworks.
- Published
- 2021
36. A transnational marine ecological observatory in the Adriatic Sea to harmonize a fragmented approach to monitoring and conservation
- Author
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Lucilla Capotondi, Caterina Bergami, Alessandra Pugnetti, Elisabeth De Maio, Alessandro Oggioni, Lucia Bongiorni, and Elisabetta Manea
- Subjects
ECOAdS ,Adriatic Sea ,Geography ,marine ecological observatories ,business.industry ,Observatory ,Environmental resource management ,ECOSS project ,Aquatic Science ,transboundary coordination ,Oceanography ,business - Abstract
The design and establishment of Marine Ecological Observatories (MEOs) are fostered at the European level. MEOs should adopt a holistic view, integrating and harmonizing long-term oceanographic and ecological research and monitoring, and increasing conservation strategies effectiveness according to the ecological connectivity concept. The data and knowledge collected and made available through MEOs should inform policies dealing with conservation and management of the marine environment. We present and discuss these issues in the Adriatic Sea context, where the transnational ecological observatory “ECOAdS” is under development in the framework of the Interreg Italy-Croatia project ECOSS (Observing System in the Adriatic Sea: oceanographic observations for biodiversity), which aims to support Natura 2000 network implementation and cross-border coordination of multiple monitoring initiatives. We analyse the main EU directives that deal with marine conservation, notably the Habitats and Birds directives, the Water Framework Directive, and the Marine Strategy Framework Directive, as they are the primary instruments that can guide the development of the observatory while strengthening cooperation at the basin scale. We bring out the synergies and discrepancies among these legal instruments, and build on them ECOAdS as a monitoring platform that may respond and contribute to their requirements, boosting the synergies and overcoming the weaknesses. Finally, we provide some hints for the further development of this transnational MEO as a collector of the existing monitoring efforts aimed at harmonizing their approaches and incorporating the ecological connectivity to foster an ecosystem-based approach to conservation management.
- Published
- 2021
37. Decentralized geospatial metadata management
- Author
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Paola Carrara, Cristiano Fugazza, Alessandro Oggioni, and Paolo Tagliolato Acquaviva d’Aragona
- Subjects
Information retrieval ,Geospatial analysis ,010504 meteorology & atmospheric sciences ,Computer science ,Interoperability ,010502 geochemistry & geophysics ,computer.software_genre ,01 natural sciences ,Semantic heterogeneity ,Domain (software engineering) ,Metadata ,Application domain ,General Earth and Planetary Sciences ,Geospatial metadata ,Semantic Web ,computer ,0105 earth and related environmental sciences - Abstract
Metadata descriptions are typically monolithic data structures and their denormalized, text-based nature yields shortcomings such as inconsistencies and heterogeneities. Moreover, fluidity of research environments, coupled with single-tenancy of metadata descriptions, impedes enforcing authority on the related datasets effectively. We propose a novel paradigm for metadata articulation, delegation, that helps solve the aforementioned issues. After elaborating on the requirements to this practice, we present two worked-out implementation examples in the domain of geospatial metadata and discuss its advantages with respect to key issues in this domain; namely, metadata consistency, interoperability, and mitigating semantic heterogeneity. The technique and the supporting software we present are equally applicable to any XML-based metadata schema and application domain.
- Published
- 2021
38. Opening Marine Long-Term Ecological Science: Lesson Learned From the LTER-Italy Site Northern Adriatic Sea
- Author
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Alessandra Pugnetti, Alessandro Sarretta, Annalisa Minelli, Caterina Bergami, Elisa Camatti, Alessandro Oggioni, Fabrizio Bernardi Aubry, and Mauro Bastianini
- Subjects
0106 biological sciences ,Open science ,010504 meteorology & atmospheric sciences ,Best practice ,Science ,LTER-Italy ,open data ,Ocean Engineering ,Aquatic Science ,Reuse ,QH1-199.5 ,Oceanography ,010603 evolutionary biology ,01 natural sciences ,EcoNAOS ,Northern Adriatic Sea ,Open Science ,Credibility ,0105 earth and related environmental sciences ,Water Science and Technology ,Global and Planetary Change ,business.industry ,Environmental resource management ,General. Including nature conservation, geographical distribution ,Open data ,Workflow ,Geography ,Work (electrical) ,Transparency (graphic) ,business - Abstract
This work presents a practical case study of the Open Science principles applied to the valorization of a long-term marine dataset collected in the Northern Adriatic Sea, one of the Long-Term Ecological Research (LTER) sites of the LTER-Italy network. The dataset covers a temporal range of 50 years (1965–2015), and it is composed of abiotic, and phyto- and zooplankton data, for a total of 21 parameters. The case study involved many actions, which will be described here, distinguishing between the ones affecting the whole research project workflow and those acting more specifically on the dataset. We evaluate strengths, weaknesses, and possible improvements for each action. The present study pointed out that, despite the initial and still some remaining mistrust, opening research projects is more than a best practice. It is (i) important because it improves research transparency (increasing researchers’ credibility, replicability of science, and products reuse), (ii) required by many international initiatives and regulations, and (iii) enriching because it encourages cooperation between scientists across different fields and laboratories.
- Published
- 2021
39. Memorandum for sharing data and information within the LTER-Italy network
- Author
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Caterina, Bergami, Alessandro, Oggioni, Capotondi Lucilla, Carrara Paola, Lami Andrea, Matteucci Giorgio, Mazzocchi Maria Grazia, Pugnetti Alessandra, and Ravaioli Mariangela
- Subjects
Curation ,Publishing ,Data ,Open Science ,Acquisition ,Data reuse ,Data Policy ,Long Term Ecological Research ,Processing ,FAIR - Abstract
The document defines the policy and the rules for sharing and accessing data produced by the Italian Long-Term Ecological Research (LTER-Italy) network. The policy aims at ensuring the diffusion of ecological data, making them as much “FAIR” (Findable, Accessible, Interoperable, and Reusable) as possible within the scientific community and the generic public.
- Published
- 2020
- Full Text
- View/download PDF
40. A Prototype of Service Oriented Architecture for Precision Agriculture
- Author
-
Giuseppe Modica, S. Di Fazio, Alessandro Oggioni, and Simone Lanucara
- Subjects
business.industry ,computer.internet_protocol ,Computer science ,Interpretation (philosophy) ,Interoperability ,Harmonization ,Service-oriented architecture ,computer.software_genre ,Software ,Sustainability ,Precision agriculture ,Web service ,Software engineering ,business ,computer - Abstract
Precision Agriculture (PA) takes advantage of digital technologies to improve agricultural production and its economic and environmental sustainability. The main issues in the implementation and spread of PA include (a) harmonization and (b) interpretation of heterogeneous data collected from different sources; (c) interoperability of systems and data; (d) implementation of new algorithms and methodologies coming from research projects; (e) semantic enablement of meta-data. To help solve these issues we propose a software infrastructure prototype developed in the framework of the SATFARMING project, and based on Service Oriented Architecture (SOA) concept, free open-source software (FOSS), interoperability of data and web services through the accomplishment of international standards, semantic enablement of data description.
- Published
- 2020
41. Input to Data Management Plans for RC Case Studies
- Author
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Johannes Peterseil, Alessandro Oggioni, Antti Pursula, Jessica Parland-von Essen, and Ari Lukkarinen
- Subjects
eLTER ,Data Management Plan - Abstract
Data Communication and Data Management are key issues of interdisciplinary research projects. The overall success depends on the well-organized data management and data exchange between involved partners. Data management is facilitating the acquisition, provision, integration, management and exchange of heterogeneous digital resources within a scientific and non-scientific multiuser (distributed) environment. Based on the requirements of cross-site data analysis conducted by the four Research Challenges defined in the eLTER PLUS project and the related science cases a first definition of use cases was done, which resulted in a number of inputs for the overall Data Management Plan for eLTER PLUS as well as for the implementation of the eLTER RI. The contributions of WP10 are input the deliverable D11.1 summarising the overall data management plan for the eLTER PLUS project and the eLTER RI. The contributions follow the recommendations of the Data Curation Centre (DCC, 2013) as well as for the provision of data management plans for H2020 projects provided by the European Commission (EC 2020).
- Published
- 2020
42. EcoNAOS: Open Science for marine long term data
- Author
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Annalisa Minelli, Caterina Bergami, Elisa Camatti, Mauro Bastianini, Fabrizio Bernardi Aubry, Alessandro Oggioni, Alessandro Sarretta, and Alessandra Pugnetti
- Subjects
Open Science ,Marine ,long term data - Abstract
Open Science is increasingly pervading scientific communities, since the worth of sharing, beyond the results, research ideas, methods and tools, data and metadata is more and more recognized. Open Science principles applied to data, translate in FAIRness of data: data must be Findable, Accessible, Interoperable and Reusable. We present a case study on the Open Science approach applied to the valorization of a long term dataset, composed of abiotic parameters, phyto- and zooplankton, collected in 50 years (1965 to 2015) in the Northern Adriatic Sea (NAS), one of the Long Term Ecological Research (LTER) sites of the LTER-Italy network. We describe and discuss the different operational parts of the case study that are all connected in defining the "open research project lifecycle". Starting from the data, the lifecycle includes each step of the entire research project, with specific sharing strategies. Two main types of actions were undertaken: (i) on data (e.g. data harmonization, metadatation, repository choice) and (ii) on the whole research process (e.g. publication of research ideas and results, sharing of source code and models, other dissemination actions). The lessons learned through the realization of this case study, in particular the assessment of the strengths and weaknesses of the solutions adopted at each stage of the "project lifecycle", might be usefully generalized and extended also to other types of LTER transitional and marine sites. In particular, this might be the case of the Lagoon of Venice (LoV), another LTER-Italy site adjacent and connected to the NAS, where comparable data have been gathered as well. The more the time series on plankton and related variables are made available, according to the FAIR principles, the more it is possible to reconstruct and compare trends and dynamics, providing precious tools for detecting significant changes in response to global or local pressures and impacts.
- Published
- 2020
43. Report on Data and ICT needs from Research Challenges (RCs) to be used in Virtual Access (VA)
- Author
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Johannes Peterseil (1), Jessica Parland-von Essen (2), Ari Lukkarinen(2), Antti Pursula (2), Alessandro Oggioni (3), Martina Zilioli (3), John Watkins (4), Susannah Rennie (4), Mike Brown (4), Barbara Magagna (1), Doron Goldfarb (1), Thomas Dirnböck (1), Peter Haase (5), Roland Baatz (6), Jan Dick (4), and Daniel Orenstein (7)
- Subjects
eLTER ,agile development ,data requirements ,ICT requirements ,user requirements - Abstract
The current document provides an overview of the data and Information and Communications Technology (ICT) requirements of the users emerging from the sciences cases in the eLTER PLUS project (see paragraph 3.1 and 3.2 for the description of the users identified for defining user requirements). These findings are used to derive functional (i.e. the behavior of essential features of the system) and non-functional (i.e. the general characteristics of the system) requirements for the Information Technology (IT) infrastructure and services, as well as to focus on data needs for large-scale analyses. The content will be used to design and further develop IT components in WP11. This document is the first iteration of user requirements and their implications for eLTER ICT development presenting high-level user stories collected following a user-centric approach. As development proceeds during the project and research advances, it will certainly be a living document in the sense that acquired knowledge will inform and influence further iterations of development, for instance by updating the proposed use cases in cooperation with stakeholders.
- Published
- 2020
44. Making data management practices compliant with Essential Variables frameworks: A practical approach in the marine biological domain
- Author
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Martina Zilioli, Alessandro Oggioni, Paolo Tagliolato, Cristiano Fugazza, Caterina Bergami, Alessandra Pugnetti, and Paola Carrara
- Subjects
long-term ,Essential Variables ,Marine observation - Abstract
Measuring marine biodiversity is essential to proper management of biological resources. Monitoring networks and observatory systems are adopting conceptual frameworks to agree on the fundamental variables describing the biodiversity change and to meaningfully inform policy makers. Biological and ecosystem Essential Ocean Variables (bio-eco EOVs) and Essential Biodiversity Variables (EBVs) both help to harmonize observations of different providers to essential measurements. Conceptual relationships between the two frameworks have been recently outlined to enrich data with complementary information. However, even if bio-eco EOVs and EBVs are adopted among research communities, they represent theoretical approaches whose implementations are often limited and still uncoupled. To evaluate operative reuse of biodiversity measurements, in this paper we identify differences and common aspects between the management recommendations established by the two frameworks in a synoptic comparison. Also, we provide evidences for applying the proposed approach to the marine component of the Long-Term Ecological Research (LTER) networks, by individuating in the Italian network (LTER-Italy) the Northern Adriatic Sea as a case study where compare, in further work, the data handling practices with the identified recommendations., Extended Abstract proposed to the MetroSea 2019 International Workshop Recieved on 15 May 2019 Accepted: 29 August 2019
- Published
- 2019
- Full Text
- View/download PDF
45. A long term (1965–2015) ecological marine database from the LTER-Italy site Northern Adriatic Sea: plankton and oceanographic observations
- Author
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Francesco Acri, Mauro Bastianini, Fabrizio Bernardi Aubry, Elisa Camatti, Alfredo Boldrin, Caterina Bergami, Daniele Cassin, Amelia De Lazzeri, Stefania Finotto, Annalisa Minelli, Alessandro Oggioni, Marco Pansera, Alessandro Sarretta, Giorgio Socal, and Alessandra Pugnetti
- Abstract
In this paper we describe a 50 years (1965–2015) ecological database containing data collected in the Northern Adriatic Sea, one of the 25 research parent sites belonging to the Italian Long Term Ecological Research Network (LTER-Italy, http://www.lteritalia.it). LTER-Italy is a formal member of the international (https://www.ilter.network) and European (http://www.lter-europe.net/) LTER networks. The NAS is undergoing a process, led by different research institutions and projects, for the establishment of a marine ecological observatory, building on the existing facilities, infrastructures, and long-term ecological data. Along this process, the implementation of the Open Access and Open Science principles has started, by creating an open research lifecycle that involves sharing ideas and results (scientific papers), data (raw and processed), metadata, methods, and software. The present data paper is framed within this wider context. The database is composed of observations on abiotic parameters, phyto- and zooplankton abundances, collected during 299 cruises in different sampling stations, in particular in the Gulf of Venice: we describe here the sampling and analytical activities, the parameters, and the structure of the database. The database is available at https://doi.org/10.5281/zenodo.3266246 (Acri et al., 2019), it was also uploaded in the DEIMS-SDR repository (Dynamic Ecological Information Management System – Site and Dataset Registry, https://deims.org/), which is the official sites and data registry for LTER International network.
- Published
- 2019
46. Feeding Essential Biodiversity Variables (EBVs): actual and potential contributions from LTER-Italy
- Author
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Paolo Tagliolato, Paola Carrara, Alessandro Oggioni, Martina Zilioli, and Alessandra Pugnetti
- Subjects
0106 biological sciences ,lcsh:QH1-199.5 ,010504 meteorology & atmospheric sciences ,business.industry ,Environmental resource management ,LTER-Italy ,Biodiversity ,lcsh:General. Including nature conservation, geographical distribution ,010603 evolutionary biology ,01 natural sciences ,EMF ,Geography ,metadata analysis ,lcsh:QH540-549.5 ,research infrastructure assessment ,lcsh:Ecology ,business ,DEIMS-SDR ,Essential Biodiversity Variables ,0105 earth and related environmental sciences ,Nature and Landscape Conservation ,EML - Abstract
The conceptual framework of Essential Biodiversity Variables (EBVs) aims to capture the major dimensions of biodiversity change by structuring biodiversity monitoring and by ruling data collection amongst different providers. Amongst the research infrastructures adopting and implementing the EBV framework, LTER-Europe - the European node of ILTER (International Long-Term Ecological Research) - follows the approach to compare site-based biodiversity observations within and across its networks. However, a synoptic overview of their contributions with EBVs-relevant data is still missing, since data are not made available for several reasons. In this paper, we assess the capacity of LTER-Italy, one of the richest and heterogeneous networks of LTER sites in Europe, to provide data to “Species Distribution” and “Species Abundance” EBVs without inspecting and downloading their contents. To this aim, we mine the EBVs information which is publicly structured and shared by LTER site managers through DEIMS-SDR, the LTER-Europe online metadata repository. We classify the sites according to two types of contributions: (i) the actual contribution, based on metadata of datasets and (ii) the potential contribution, based on metadata of sites. Through these assessments, we investigate if LTER-Italy monitoring activities can provide EBVs measures and which sites currently provide datasets. By comparing the two contributions, we pinpoint the factors hampering the accessibility of LTER-Italy data and suggest solutions to increase the discoverability and reusability of LTER-Italy EBVs measurements. The research provides the first overview of EBVs monitored in LTER-Italy and the corresponding data management practices, as well as an evaluation of the interoperability of this network with respect to other research organisations for legal and technical aspects.
- Published
- 2019
47. GET-IT: Integrating sensor information and semantics-aware metadata in GeoNode
- Author
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Fugazza Cristiano, Tagliolato Paolo, and Lanucara Simone e Alessandro Oggioni
- Subjects
SensorML ,SOS ,SWE ,GeoNode ,Sensor - Abstract
Since 2014, the Geoinformation Enabling Toolkit starterkIT® (GET-IT), enriched GeoNode® with components addressing two essential needs of scientific research communities. On the one hand GET-IT integrates software for the management of sensor information (via the Sensor Observation Service by 52°North) alongside the geographic information natively supported by GeoNode. On the other, this software suite allows for advanced, customizable, and semantics-aware metadata management (via the EDI editor developed by CNR - IREA). These components enable communities interoperable management of in-situ sensor and geographic data through standards-based metadata and services (e.g., OGC, INSPIRE). Initially developed for the marine domain, GET-IT has been customized for the environmental, geological, urban planning, and precision agriculture contexts. In this presentation, the architectural and technological choices underlying this GeoNode Project will be showcased.
- Published
- 2019
48. Metadata, Controlled Vocabularies and Ontologies 2nd Working meeting Report
- Author
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Antonio José Sáenz, Alessandro Oggioni, Caterina Bergami, Ilaria Rosati, José María García, Magda Aljancic, Nicola Fiore, and Zhiming Zhao
- Subjects
Metadata ,Ontologies ,Controlled Vocabularies - Abstract
The LifeWatch ERIC (hereafter LW ERIC) Service Centre organised the second working meeting on "Metadata, Controlled Vocabularies and Ontologies" in Lecce from 15 to 17 April 2019. The aim of the meeting was to continue the activities related to the definition of a common strategy to be adopted on metadata, controlled vocabularies and ontologies within the LW ERIC community and in accordance with the FAIR principles. The meeting involved participation from 10 experts, with both scientific and technical backgrounds, from 5 national nodes of LW ERIC (Greece, Italy, Spain, Slovenia, The Netherlands). Three sessions were held on 1) Metadata, 2) Controlled Vocabularies, and 3) Ontologies, each one including a summary on work already done and working sessions for the implementation and curation of metadata, standardized controlled vocabularies and ontologies.
- Published
- 2019
49. Metadata, Controlled Vocabularies & Ontologies 1st Working Meeting Report
- Author
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Caterina Bergami, Nicola Fiore, Alessandro Oggioni, and Ilaria Rosati
- Subjects
Metadata ,Ontology ,Controller Vocabs - Abstract
On November 12th & 13th, the LifeWatch-ERIC (hereafter LW-ERIC) Service Centre organised the first working meeting on "Metadata, Controlled Vocabularies and Ontologies" in Lecce, Italy. The aim of the meeting was to set a roadmap for a common strategy to be adopted on metadata, controlled vocabularies and ontologies within the LW-ERIC community and in accordance with the FAIR principles. The meeting involved participation from 13 experts, with both scientific and technical backgrounds, from six national nodes of LW-ERIC (Belgium, Greece, Italy, Spain, Slovenia, The Netherlands). Three sessions were held on 1) Metadata, 2) Controlled Vocabularies, and 3) Ontologies, each one including a tour de table on existing approaches in the national nodes and a discussion to define common best practices for the implementation and curation of metadata, standardized controlled vocabularies and ontologies. Presentations, foreseen for each session, outlined previous work and set the current landscape of models, tools and technologies that are available to support metadata, controlled vocabularies and ontologies within national nodes of LW-ERIC. They also provided material for following discussions, where the main technical and scientific approaches about the semantic issues in the Research Infrastructures have been also considered in order to identifying a common strategy to be adopted by LW-ERIC. This meeting is a first step toward medium-term goals. Follow-on work, including more meetings or workshops by experts and the LW-ERIC community, will significantly advance this initiative.
- Published
- 2019
50. Plankton dynamics across the freshwater, transitional and marine research sites of the LTER-Italy Network. Patterns, fluctuations, drivers
- Author
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Francesca Margiotta, Mauro Bastianini, Antonella Gesuina Laura Lugliè, Iole Di Capua, Marina Cabrini, Paolo Povero, Diana Sarno, Michela Castellano, Mauro Marini, Giampaolo Rossetti, Alessandra de Olazabal, Alessandro Ludovisi, Ilaria Rosati, Elena Stanca, Mariano Bresciani, Nico Salmaso, Alessandra Pugnetti, Marina Giallain, Marina Manca, Cecilia Totti, Cecilia Teodora Satta, Antonia Concetta Elia, Mara Marzocchi, Marco Pansera, Nicola Sechi, Silvia Pulina, Federica Grilli, Giuseppe Morabito, Ulrike Obertegger, Valentina Tirelli, Genuario Belmonte, Daniela Fornasaro, Barbara Leoni, Tiziana Romagnoli, Maria Antonietta Mariani, Fabrizio Bernardi Aubry, Carmela Caroppo, Caterina Bergami, M. Lipizer, Bachisio Mario Padedda, Isabella Bertani, Elisa Camatti, Fabio Buzzi, Bruno Cataletto, Roberta Piscia, Paola Del Negro, Maria Grazia Mazzocchi, Giovanna Flaim, Alberto Basset, Alessandro Oggioni, Adriana Zingone, Fernando Rubino, Stefano Accoroni, Lorenzo Longobardi, Giuseppe, Morabito, Maria Grazia Mazzocchi, Nico, Salmaso, Adriana, Zingone, Caterina, Bergami, Giovanna, Flaim, Stefano, Accoroni, Basset, Alberto, Mauro, Bastianini, Belmonte, Genuario, Fabrizio Bernardi Aubry, Isabella, Bertani, Mariano, Bresciani, Fabio, Buzzi, Marina, Cabrini, Elisa, Camatti, Carmela, Caroppo, Bruno, Cataletto, Michela, Castellano, Paola Del Negro, Alessandra de Olazabal, Iole Di Capua, Antonia Concetta Elia, Daniela, Fornasaro, Marina, Giallain, Federica, Grilli, Barbara, Leoni, Marina, Lipizer, Lorenzo, Longobardi, Alessandro, Ludovisi, Antonella, Lugliè, Marina, Manca, Francesca, Margiotta, Maria Antonietta Mariani, Mauro, Marini, Mara, Marzocchi, Ulrike, Obertegger, Alessandro, Oggioni, Bachisio Mario Padedda, Marco, Pansera, Roberta, Piscia, Paolo, Povero, Silvia, Pulina, Tiziana, Romagnoli, Rosati, Ilaria, Giampaolo, Rossetti, Fernando, Rubino, Diana, Sarno, Cecilia Teodora Satta, Sechi, Nicola, Stanca, Elena, Valentina, Tirelli, Cecilia, Totti, Alessandra, Pugnetti, Morabito, G, Mazzocchi, M, Salmaso, N, Zingone, A, Bergami, C, Flaim, G, Accoroni, S, Basset, A, Bastianini, M, Belmonte, G, Bernardi Aubry, F, Bertani, I, Bresciani, M, Buzzi, F, Cabrini, M, Camatti, E, Caroppo, C, Cataletto, B, Castellano, M, Del Negro, P, de Olazabal, A, Di Capua, I, Elia, A, Fornasaro, D, Giallain, M, Grilli, F, Leoni, B, Lipizer, M, Longobardi, L, Ludovisi, A, Lugliè, A, Manca, M, Margiotta, F, Mariani, M, Marini, M, Marzocchi, M, Obertegger, U, Oggioni, A, Padedda, B, Pansera, M, Piscia, R, Povero, P, Pulina, S, Romagnoli, T, Rosati, I, Rossetti, G, Rubino, F, Sarno, D, Satta, C, Sechi, N, Stanca, E, Tirelli, V, Totti, C, and Pugnetti, A
- Subjects
0106 biological sciences ,LTER-Italy aquatic site ,Environmental Engineering ,Freshwater inflow ,010504 meteorology & atmospheric sciences ,LTER-Italy ,Population Dynamics ,Aquatic ecosystem ,Ecological succession ,LTER ,01 natural sciences ,Zooplankton ,Settore BIO/07 - ECOLOGIA ,Phytoplankton ,Environmental Chemistry ,Animals ,Ecosystem ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Driving factors ,Ecology ,seasonality ,010604 marine biology & hydrobiology ,plankton ,fungi ,Pelagic zone ,Plankton ,Pollution ,Mesozooplankton ,Aquatic ecosystems ,Italy ,long term changes ,Aquatic ecosystems, LTER-Italy, Mesozooplankton, Phytoplankton ,Environmental science ,BIO/07 - ECOLOGIA ,BIO/05 - ZOOLOGIA ,Environmental Monitoring - Abstract
A first synoptic and trans-domain overview of plankton dynamics was conducted across the aquatic sites belonging to the Italian Long-Term Ecological Research Network (LTER-Italy). Based on published studies, checked and complemented with unpublished information, we investigated phytoplankton and zooplankton annual dynamics and long-term changes across domains: from the large subalpine lakes to mountain lakes and artificial lakes, from lagoons to marine coastal ecosystems. This study permitted identifying common and unique environmental drivers and ecological functional processes controlling seasonal and long-term temporal course. The most relevant patterns of plankton seasonal succession were revealed, showing that the driving factors were nutrient availability, stratification regime, and freshwater inflow. Phytoplankton and mesozooplankton displayed a wide interannual variability at most sites. Unidirectional or linear long-term trends were rarely detected but all sites were impacted across the years by at least one, but in many case several major stressor(s): nutrient inputs, meteo-climatic variability at the local and regional scale, and direct human activities at specific sites. Different climatic and anthropic forcings frequently co-occurred, whereby the responses of plankton communities were the result of this environmental complexity. Overall, the LTER investigations are providing an unparalleled framework of knowledge to evaluate changes in the aquatic pelagic systems and management options.
- Published
- 2017
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