50 results on '"Aleksandra Krstic"'
Search Results
2. Whole-genome informed circulating tumor DNA analysis by multiplex digital PCR for disease monitoring in B-cell lymphomas: a proof-of-concept study
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Zahra Haider, Tove Wästerlid, Linn Deleskog Spångberg, Leily Rabbani, Cecilia Jylhä, Birna Thorvaldsdottir, Aron Skaftason, Hero Nikdin Awier, Aleksandra Krstic, Anna Gellerbring, Anna Lyander, Moa Hägglund, Ashwini Jeggari, Georgios Rassidakis, Kristina Sonnevi, Birgitta Sander, Richard Rosenquist, Emma Tham, and Karin E. Smedby
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cell-free DNA (cfDNA) ,whole genome sequence (WGS) ,liquid biopsy ,lymphoma ,measurable (minimal) residual disease (MRD) ,droplet digital (ddPCR) ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
IntroductionAnalyzing liquid biopsies for tumor-specific aberrations can facilitate detection of measurable residual disease (MRD) during treatment and at follow-up. In this study, we assessed the clinical potential of using whole-genome sequencing (WGS) of lymphomas at diagnosis to identify patient-specific structural (SVs) and single nucleotide variants (SNVs) to enable longitudinal, multi-targeted droplet digital PCR analysis (ddPCR) of cell-free DNA (cfDNA).MethodsIn 9 patients with B-cell lymphoma (diffuse large B-cell lymphoma and follicular lymphoma), comprehensive genomic profiling at diagnosis was performed by 30X WGS of paired tumor and normal specimens. Patient-specific multiplex ddPCR (m-ddPCR) assays were designed for simultaneous detection of multiple SNVs, indels and/or SVs, with a detection sensitivity of 0.0025% for SV assays and 0.02% for SNVs/indel assays. M-ddPCR was applied to analyze cfDNA isolated from serially collected plasma at clinically critical timepoints during primary and/or relapse treatment and at follow-up.ResultsA total of 164 SNVs/indels were identified by WGS including 30 variants known to be functionally relevant in lymphoma pathogenesis. The most frequently mutated genes included KMT2D, PIM1, SOCS1 and BCL2. WGS analysis further identified recurrent SVs including t(14;18)(q32;q21) (IGH::BCL2), and t(6;14)(p25;q32) (IGH::IRF4). Plasma analysis at diagnosis showed positive circulating tumor DNA (ctDNA) levels in 88% of patients and the ctDNA burden correlated with baseline clinical parameters (LDH and sedimentation rate, p-value
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- 2023
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3. Case Report: Whole genome sequencing identifies CCDC88C as a novel JAK2 fusion partner in pediatric T-cell acute lymphoblastic leukemia
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Aleksandra Krstic, Fatemah Rezayee, Leonie Saft, Anna Hammarsjö, Petter Svenberg, and Gisela Barbany
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pediatric T-ALL ,whole genome sequencing ,JAK2 fusions ,targeted therapy ,precision medicine ,Pediatrics ,RJ1-570 - Abstract
In the present report, we applied whole genome sequencing (WGS) to genetically characterize a case of pediatric T-cell acute lymphoblastic leukemia (ALL) refractory to standard therapy. WGS identified a novel JAK2 fusion, with CCDC88C as a partner. CCDC88C encodes a protein part of the Wnt signaling pathway and has previously been described in hematological malignancies as fusion partner to FLT3 and PDGFRB. The novel CCDC88C::JAK2 fusion gene results in a fusion transcript, predicted to produce a hybrid protein, which retains the kinase domain of JAK2 and is expected to respond to JAK2 inhibitors. This report illustrates the potential of WGS in the diagnostic setting of ALL.
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- 2023
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4. Data-driven support to decision-making in molecular tumour boards for lymphoma: A design science approach
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Núria Rodríguez Ruiz, Sulaf Abd Own, Karin Ekström Smedby, Sandra Eloranta, Sabine Koch, Tove Wästerlid, Aleksandra Krstic, and Magnus Boman
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precision medicine ,next-generation sequencing ,molecular tumour board ,clinical decision support system ,artificial intelligence ,multimodal data ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundThe increasing amount of molecular data and knowledge about genomic alterations from next-generation sequencing processes together allow for a greater understanding of individual patients, thereby advancing precision medicine. Molecular tumour boards feature multidisciplinary teams of clinical experts who meet to discuss complex individual cancer cases. Preparing the meetings is a manual and time-consuming process.PurposeTo design a clinical decision support system to improve the multimodal data interpretation in molecular tumour board meetings for lymphoma patients at Karolinska University Hospital, Stockholm, Sweden. We investigated user needs and system requirements, explored the employment of artificial intelligence, and evaluated the proposed design with primary stakeholders.MethodsDesign science methodology was used to form and evaluate the proposed artefact. Requirements elicitation was done through a scoping review followed by five semi-structured interviews. We used UML Use Case diagrams to model user interaction and UML Activity diagrams to inform the proposed flow of control in the system. Additionally, we modelled the current and future workflow for MTB meetings and its proposed machine learning pipeline. Interactive sessions with end-users validated the initial requirements based on a fictive patient scenario which helped further refine the system.ResultsThe analysis showed that an interactive secure Web-based information system supporting the preparation of the meeting, multidisciplinary discussions, and clinical decision-making could address the identified requirements. Integrating artificial intelligence via continual learning and multimodal data fusion were identified as crucial elements that could provide accurate diagnosis and treatment recommendations.ImpactOur work is of methodological importance in that using artificial intelligence for molecular tumour boards is novel. We provide a consolidated proof-of-concept system that could support the end-to-end clinical decision-making process and positively and immediately impact patients.ConclusionAugmenting a digital decision support system for molecular tumour boards with retrospective patient material is promising. This generates realistic and constructive material for human learning, and also digital data for continual learning by data-driven artificial intelligence approaches. The latter makes the future system adaptable to human bias, improving adequacy and decision quality over time and over tasks, while building and maintaining a digital log.
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- 2022
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5. FOXO1 and FOXO3 Cooperatively Regulate Innate Lymphoid Cell Development
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Thuy T. Luu, Jonas Nørskov Søndergaard, Lucía Peña-Pérez, Shabnam Kharazi, Aleksandra Krstic, Stephan Meinke, Laurent Schmied, Nicolai Frengen, Yaser Heshmati, Marcin Kierczak, Thibault Bouderlique, Arnika Kathleen Wagner, Charlotte Gustafsson, Benedict J. Chambers, Adnane Achour, Claudia Kutter, Petter Höglund, Robert Månsson, and Nadir Kadri
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innate lymphocyte cells (ILCs) ,development ,FOXO ,natural killer cells ,IL-15 ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Natural killer (NK) cells play roles in viral clearance and early surveillance against malignant transformation, yet our knowledge of the underlying mechanisms controlling their development and functions remain incomplete. To reveal cell fate-determining pathways in NK cell progenitors (NKP), we utilized an unbiased approach and generated comprehensive gene expression profiles of NK cell progenitors. We found that the NK cell program was gradually established in the CLP to preNKP and preNKP to rNKP transitions. In line with FOXO1 and FOXO3 being co-expressed through the NK developmental trajectory, the loss of both perturbed the establishment of the NK cell program and caused stalling in both NK cell development and maturation. In addition, we found that the combined loss of FOXO1 and FOXO3 caused specific changes to the composition of the non-cytotoxic innate lymphoid cell (ILC) subsets in bone marrow, spleen, and thymus. By combining transcriptome and chromatin profiling, we revealed that FOXO TFs ensure proper NK cell development at various lineage-commitment stages through orchestrating distinct molecular mechanisms. Combined FOXO1 and FOXO3 deficiency in common and innate lymphoid cell progenitors resulted in reduced expression of genes associated with NK cell development including ETS-1 and their downstream target genes. Lastly, we found that FOXO1 and FOXO3 controlled the survival of committed NK cells via gene regulation of IL-15Rβ (CD122) on rNKPs and bone marrow NK cells. Overall, we revealed that FOXO1 and FOXO3 function in a coordinated manner to regulate essential developmental genes at multiple stages during murine NK cell and ILC lineage commitment.
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- 2022
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6. FOXO Dictates Initiation of B Cell Development and Myeloid Restriction in Common Lymphoid Progenitors
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Lucía Peña-Pérez, Shabnam Kharazi, Nicolai Frengen, Aleksandra Krstic, Thibault Bouderlique, Julia Hauenstein, Minghui He, Ece Somuncular, Xiaoze Li Wang, Carin Dahlberg, Charlotte Gustafsson, Ann-Sofie Johansson, Julian Walfridsson, Nadir Kadri, Petter Woll, Marcin Kierczak, Hong Qian, Lisa Westerberg, Sidinh Luc, and Robert Månsson
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B cell ,FOXO (forkhead box protein O) ,lineage commitment/specification ,myeloid restriction ,gene regulation ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The development of B cells relies on an intricate network of transcription factors critical for developmental progression and lineage commitment. In the B cell developmental trajectory, a temporal switch from predominant Foxo3 to Foxo1 expression occurs at the CLP stage. Utilizing VAV-iCre mediated conditional deletion, we found that the loss of FOXO3 impaired B cell development from LMPP down to B cell precursors, while the loss of FOXO1 impaired B cell commitment and resulted in a complete developmental block at the CD25 negative proB cell stage. Strikingly, the combined loss of FOXO1 and FOXO3 resulted in the failure to restrict the myeloid potential of CLPs and the complete loss of the B cell lineage. This is underpinned by the failure to enforce the early B-lineage gene regulatory circuitry upon a predominantly pre-established open chromatin landscape. Altogether, this demonstrates that FOXO3 and FOXO1 cooperatively govern early lineage restriction and initiation of B-lineage commitment in CLPs.
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- 2022
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7. Coumarin-Palladium(II) Complex Acts as a Potent and Non-Toxic Anticancer Agent against Pancreatic Carcinoma Cells
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Aleksandra Krstic, Aleksandar Pavic, Edina Avdovic, Zoran Markovic, Milena Stevanovic, and Isidora Petrovic
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coumarin derivatives ,coumarin palladium(II) complex ,pancreatic carcinoma ,anticancer ,Organic chemistry ,QD241-441 - Abstract
Pancreatic carcinoma still represents one of the most lethal malignant diseases in the world although some progress has been made in treating the disease in the past decades. Current multi-agent treatment options have improved the overall survival of patients, however, more effective treatment strategies are still needed. In this paper we have characterized the anticancer potential of coumarin-palladium(II) complex against pancreatic carcinoma cells. Cells viability, colony formation and migratory potential of pancreatic carcinoma cells were assessed in vitro, followed by evaluation of apoptosis induction and in vivo testing on zebrafish. Presented results showed remarkable reduction in pancreatic carcinoma cells growth both in vitro and in vivo, being effective at micromolar concentrations (0.5 μM). Treatments induced apoptosis, increased BAX/BCL-2 ratio and suppressed the expression of SOX9 and SOX18, genes shown to be significantly up-regulated in pancreatic ductal adenocarcinoma. Importantly, treatments of the zebrafish-pancreatic adenocarcinoma xenografts resulted in significant reduction in tumor mass, without provoking any adverse toxic effects including hepatotoxicity. Presented results indicate the great potential of the tested compound and the perspective of its further development towards pancreatic cancer therapy.
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- 2022
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8. The histone chaperone NAP1L3 is required for haematopoietic stem cell maintenance and differentiation
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Yaser Heshmati, Shabnam Kharazi, Gözde Türköz, David Chang, Esmat Kamali Dolatabadi, Johan Boström, Aleksandra Krstic, Theodora Boukoura, Emma Wagner, Nadir Kadri, Robert Månsson, Mikael Altun, Hong Qian, and Julian Walfridsson
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Medicine ,Science - Abstract
Abstract Nucleosome assembly proteins (NAPs) are histone chaperones with an important role in chromatin structure and epigenetic regulation of gene expression. We find that high gene expression levels of mouse Nap1l3 are restricted to haematopoietic stem cells (HSCs) in mice. Importantly, with shRNA or CRISPR-Cas9 mediated loss of function of mouse Nap1l3 and with overexpression of the gene, the number of colony-forming cells and myeloid progenitor cells in vitro are reduced. This manifests as a striking decrease in the number of HSCs, which reduces their reconstituting activities in vivo. Downregulation of human NAP1L3 in umbilical cord blood (UCB) HSCs impairs the maintenance and proliferation of HSCs both in vitro and in vivo. NAP1L3 downregulation in UCB HSCs causes an arrest in the G0 phase of cell cycle progression and induces gene expression signatures that significantly correlate with downregulation of gene sets involved in cell cycle regulation, including E2F and MYC target genes. Moreover, we demonstrate that HOXA3 and HOXA5 genes are markedly upregulated when NAP1L3 is suppressed in UCB HSCs. Taken together, our findings establish an important role for NAP1L3 in HSC homeostasis and haematopoietic differentiation.
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- 2018
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9. Dataset on the energy performance of atrium type hotel buildings
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Milica Vujosevic and Aleksandra Krstic-Furundzic
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
The data presented in this article are related to the research article entitled “The Influence of Atrium on Energy Performance of Hotel Building” (Vujosevic and Krstic-Furundzic, 2017) [1], which describes the annual energy performance of atrium type hotel building in Belgrade climate conditions, with the objective to present the impact of the atrium on the hotel building's energy demands for space heating and cooling. This dataset is made publicly available to show energy performance of selected hotel design alternatives, in order to enable extended analyzes of these data for other researchers. Keywords: Hotel, Atrium, Energy performance, Numerical simulation, Heating and cooling demands
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- 2018
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10. The Concerted Action of E2-2 and HEB Is Critical for Early Lymphoid Specification
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Thibault Bouderlique, Lucia Peña-Pérez, Shabnam Kharazi, Miriam Hils, Xiaoze Li, Aleksandra Krstic, Ayla De Paepe, Christian Schachtrup, Charlotte Gustafsson, Dan Holmberg, Kristina Schachtrup, and Robert Månsson
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E-protein ,lymphoid specification ,hematopoiesis ,humoral immunity ,evolution ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The apparition of adaptive immunity in Gnathostomata correlates with the expansion of the E-protein family to encompass E2-2, HEB, and E2A. Within the family, E2-2 and HEB are more closely evolutionarily related but their concerted action in hematopoiesis remains to be explored. Here we show that the combined disruption of E2-2 and HEB results in failure to express the early lymphoid program in Common lymphoid precursors (CLPs) and a near complete block in B-cell development. In the thymus, Early T-cell progenitors (ETPs) were reduced and T-cell development perturbed, resulting in reduced CD4 T- and increased γδ T-cell numbers. In contrast, hematopoietic stem cells (HSCs), erythro-myeloid progenitors, and innate immune cells were unaffected showing that E2-2 and HEB are dispensable for the ancestral hematopoietic lineages. Taken together, this E-protein dependence suggests that the appearance of the full Gnathostomata E-protein repertoire was critical to reinforce the gene regulatory circuits that drove the emergence and expansion of the lineages constituting humoral immunity.
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- 2019
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11. The chromatin-remodeling factor CHD4 is required for maintenance of childhood acute myeloid leukemia
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Yaser Heshmati, Gözde Türköz, Aditya Harisankar, Shabnam Kharazi, Johan Boström, Esmat Kamali Dolatabadi, Aleksandra Krstic, David Chang, Robert Månsson, Mikael Altun, Hong Qian, and Julian Walfridsson
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Epigenetic alterations contribute to leukemogenesis in childhood acute myeloid leukemia and therefore are of interest for potential therapeutic strategies. Herein, we performed large-scale ribonucleic acid interference screens using small hairpin ribonucleic acids in acute myeloid leukemia cells and non-transformed bone marrow cells to identify leukemia-specific dependencies. One of the target genes displaying the strongest effects on acute myeloid leukemia cell growth and less pronounced effects on nontransformed bone marrow cells, was the chromatin remodeling factor CHD4. Using ribonucleic acid interference and CRISPR-Cas9 approaches, we showed that CHD4 was essential for cell growth of leukemic cells in vitro and in vivo. Loss of function of CHD4 in acute myeloid leukemia cells caused an arrest in the G0 phase of the cell cycle as well as downregulation of MYC and its target genes involved in cell cycle progression. Importantly, we found that inhibition of CHD4 conferred anti-leukemic effects on primary childhood acute myeloid leukemia cells and prevented disease progression in a patient-derived xenograft model. Conversely, CHD4 was not required for growth of normal hematopoietic cells. Taken together, our results identified CHD4 as a potential therapeutic target in childhood acute myeloid leukemia.
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- 2018
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12. Competitive Authoritarianism and Populism in Serbia Under Vučić in Political Cartoons
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Nebojsa Vladisavljevic and Aleksandra Krstic
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competitive authoritarianism ,Economics and Econometrics ,History ,Sociology and Political Science ,postcommunism ,Geography, Planning and Development ,serbia ,populism - Abstract
We explored links between competitive authoritarianism and populism in Serbia under Vučić via mixed methods. We conducted a quantitative content analysis of 228 political cartoons (2013–2017) by Dušan Petričić, a leading cartoonist and government critic, and qualitative visual and contextual analysis of four cartoons that reflected key themes—media freedom violations, unfair political competition, and populist and abusive rule. We found that populism appeared as the ‘soft’ face of competitive authoritarianism, tolerable to domestic audiences and acceptable to influential international actors because of its reliance on more informal and sophisticated and less repressive forms of authoritarian manipulation.
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- 2022
13. The view from above: visual representation of Serbia’s citizens on Instagram profile of the president Aleksandar Vučić
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Aleksandra Krstic
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predsednik ,mediji ,citizens ,visual political communication ,president ,Instagram ,visual media content ,Srbija ,građani ,General Medicine ,Serbia ,vizuelni okviri - Abstract
Veliki broj političara koristi vizuelni medijski sadržaj za potrebe lične promocije, predizbornih kampanja i za komunikaciju sa biračima. Pored televizijskih snimaka i fotografija u štampanim medijima, političari sve više koriste vizuelno-centrične digitalne platforme, poput Instagrama, Jutjuba, Snepčeta i TikToka, kako bi doprli do šire javnosti i obezbedili veću podršku. Jedan broj političara redovno koristi Instagram kao mrežu koja beleži ogroman rast u odnosu na druge poznate društvene mreže. Instagram je svojom vizuelnošću omogućio političku hiperindividualizaciju, pa se čini da su inače distancirani predsednici, premijeri i drugi političari sve „običniji” i bliži građanima. Jedan od njih je i predsednik Srbije Aleksandar Vučić, čiji je zvanični Instagram profil @buducnostsrbijeav poslednjih godina postao važan izvor informacija mejnstrim medijima u Srbiji, pa i Javnom medijskom servisu. Imajući u vidu ovaj kontekst, u radu se istražuje kako se na Instagram profilu predsednika Srbije vizuelno reprezentuju građani Srbije i kao objekat i kao izvor politike. Na osnovu kvantitativne i kvalitativne analize fotografija i video snimaka objavljenih u toku 2019. i 2021. godine, identifikuju se glavni vizuelni okviri u kojima se predstavljaju građani Srbije, kao i vizuelne strategije na osnovu kojih Aleksandar Vučić stupa u interakciju sa običnim ljudima, uspostavlja odnose sa pojedinim društvenim i profesionalnim grupama, a istovremeno šalje određene političke poruke. A large number of politicians often use visual media content for promotion, cam- paigning and communication with citizens. Alongside traditional visual con- tent, such as TV newscasts and images in print media, visual digital platforms and social media have become popular avenues for politicians to reach the au- dience and garner support. Some of them regularly use Instagram as a growing platform in recent years, which has contributed to political hyper-individualiza- tion and made “distanced” presidents, prime ministers and other political lead- ers more “ordinary” and closer to citizens. The Instagram account of Aleksandar Vučić, Serbia’s president, has become highly popular in recent years and high- ly relevant source of information for the mainstream media in Serbia, including the Public Broadcasting Service RTS. Against this background, this paper exam- ines how Serbia’s citizens have been visually represented on the president’s In- stagram. For that purpose, quantitative and qualitative content analysis of pho- tographs and videos published in 2019 and 2021 has been conducted. The study identifies the main visual frames in which the citizens of Serbia appear on this profile and discusses the leading visual strategies of Vučić’s interaction with the people in general and with specific social and professional groups
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- 2022
14. The Politics of Giving Voice: Media Framing of Extremist Groups in the 2010 Pride Parade in Serbia
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Filip Ejdus, Nebojsa Vladisavljevic, and Aleksandra Krstic
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Sociology and Political Science - Published
- 2022
15. Visual framing of migrants and refugees in Serbia’s media from 2015 until 2020
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Aleksandra Krstic
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General Social Sciences - Abstract
The research of media presentation of migrants and refugees has been intensified in recent years, especially after 2015 when several million people fled their homes from the war zones in the Middle East and Africa. Contemporary scholarship focusing on journalistic and media reporting on migrant crisis has been mainly researching Western European and the US media context, as well as verbal media narratives of print media outlets. Only a small number of papers examines visual media content, which can have a significant impact on citizens? perceptions about migrants and refugees. In Serbia, a country situated on ?the Balkans route? and which more than a million people from Middle East and Africa had crossed since 2015, visual depiction of migrants and refugees has been rarely researched. Against this background, the paper is based on media framing theory and examines visual framing of migrants and refugees in nine print and online media in Serbia from 2015 until 2020. Methodologically, the paper builds on mixed method research of 469 images analyzed within the denotative, stylistic-semiotic and connotative level of visual media framing (Rodriguez and Dimitrova, 2011), including the timeline analysis of dominant visual media frames and presentation techniques of migrants and refugees in the relevant media outlets in Serbia.
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- 2022
16. Faceless, estranged and dangerous: Visual representation of female migrants from the Middle East and Africa in the Serbian media landscape
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Aleksandra Krstic
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Contemporary research on media reporting about migrants and refugees has been intensified since the 2015 European migrant crisis. However, only a limited number of authors focus on the visual representation of female migrants, which has been recognised to lead to more positive citizens' perceptions and the development of the "culture of hospitality" (Bleiker et al., 2014). The main objective of this paper is to identify dominant visual frame in which female migrants appear in the Serbian print and online media. The mixed-method analysis of 54 images captured from 2015 until 2020 is based on the theoretical concept of visual media frames. The main results show that female migrants have been dominantly visually represented as a threat to border security and public health and that they are usually captured in long shots, deprived of identity and voice in the overall media coverage.
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- 2022
17. Zrinjka Peruško, Dina Vozab and Antonija Čuvalo (2021). Comparing Post-Socialist Media Systems – the Case of Southeast Europe
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Aleksandra Krstic
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Communication - Published
- 2021
18. Evaluation of Improved Classification of Speech-Like Waveforms Used for Secure Voice Transmission
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Sara Cubrilovic, Duska Mandic, and Aleksandra Krstic
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- 2022
19. Digital transformation of journalism and media in Serbia: What has gone wrong?
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Aleksandra Krstic
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Media ,Arts and Humanities (miscellaneous) ,Communication ,digital transformation ,journalism ,democratic transition ,Serbia - Abstract
The aim of this paper is to sketch a brief history of complex digital transformation of media and journalism in the context of Serbia, a European country which has undergone politically turbulent transition from authoritarian to democratic rule over the past 20 years. Despite the long process of the EU integration, the country has been recently downgraded to a partly free hybrid regime with rapid decline of press freedom, high political and media polarization and raising political and economic instrumentalization of media. Against this background, the paper problematizes how the main structural transformations of the media environment, such as the transition from state to public broadcasting, the introduction of new media laws and the lengthy process of media privatization intersected and influenced different phases and outcomes of the digital transformation of journalism and news media in the country. Unlike the digital journalism development in established democracies of the West, the real systemic change and adaptation of Serbia’s media market to easy-to-use technologies, newsrooms convergence, profitable content and participatory journalism has been largely limited and overpowered by the interplay between the state and the media over the past two decades.
- Published
- 2023
20. Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma
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Lucía Peña-Pérez, Nicolai Frengen, Julia Hauenstein, Charlotte Gran, Charlotte Gustafsson, Jesper Eisfeldt, Marcin Kierczak, Fanny Taborsak-Lines, Remi-André Olsen, Ann Wallblom, Aleksandra Krstic, Philip Ewels, Anna Lindstrand, and Robert Månsson
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DNA Copy Number Variations ,Whole Genome Sequencing ,Humans ,Genomics ,Multiple Myeloma ,In Situ Hybridization, Fluorescence ,Translocation, Genetic - Abstract
Multiple myeloma (MM) is an incurable and aggressive plasma cell malignancy characterized by a complex karyotype with multiple structural variants (SVs) and copy number variations (CNVs). Linked-read whole-genome sequencing (lrWGS) allows for refined detection and reconstruction of SVs by providing long-range genetic information from standard short-read sequencing. This makes lrWGS an attractive solution for capturing the full genomic complexity of MM. Here we show that high-quality lrWGS data can be generated from low numbers of FACS sorted cells without DNA purification. Using this protocol, we analyzed FACS sorted MM cells from 37 MM patients with lrWGS. We found high concordance between lrWGS and FISH for the detection of recurrent translocations and CNVs. Outside of the regions investigated by FISH, we identified >150 additional SVs and CNVs across the cohort. Analysis of the lrWGS data allowed for resolving the structure of diverse SVs affecting the MYC and t(11;14) loci causing the duplication of genes and gene regulatory elements. In addition, we identified private SVs causing the dysregulation of genes recurrently involved in translocations with the IGH locus and show that these can alter the molecular classification of the MM. Overall, we conclude that lrWGS allows for the detection of aberrations critical for MM prognostics and provides a feasible route for providing comprehensive genetics. Implementing lrWGS could provide more accurate clinical prognostics, facilitate genomic medicine initiatives, and greatly improve the stratification of patients included in clinical trials.KEY POINTS- Linked-read WGS can be performed without DNA purification and allows for resolving the diverse structural variants found in multiple myeloma.- Linked-read WGS can, as a stand-alone assay, provide comprehensive genetics in myeloma and other diseases with complex genomes.
- Published
- 2021
21. FOXO1 and FOXO3 cooperatively regulate innate lymphoid cell development
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Benedict J. Chambers, Arnika Kathleen Wagner, Charlotte Gustafsson, Nicolai Frengen, Yaser Heshmati, Shabnam Kharazi, Stephan Meinke, Robert Månsson, Aleksandra Krstic, Thibault Bouderlique, Jonas Nørskov Søndergaard, Laurent Schmied, Thuy T. Luu, Claudia Kutter, Lucía Peña-Pérez, Marcin Kierczak, Nadir Kadri, Adnane Achour, and Petter Höglund
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body regions ,Immune system ,Innate lymphoid cell ,FOXO3 ,FOXO Family ,FOXO1 ,Lymphopoiesis ,Biology ,skin and connective tissue diseases ,Cell Maturation ,Cell biology ,Progenitor - Abstract
SUMMARYThe natural killer (NK) and non-cytotoxic innate lymphoid cells (ILC) lineages play vital role in the regulation of the immune system. Yet understanding of mechanisms controlling NK/ILC development remains incomplete. The evolutionary conserved FOXO family of forkhead transcription factors are critical regulators of cellular processes. We found that the loss of FOXO1 and FOXO3 together caused impaired activation of the NK gene expression program and reduced ETS binding already at the common lymphoid progenitor (CLP) level and a block at the ILC progenitor (ILCP) to NK progenitor transition. FOXO controlled NK cell maturation in organ specific manner and their ability to respond to IL-15. At the ILCP level, disruption of the ILC lineage specific gene programs was associated with broad perturbation of the generation of the non-cytotoxic ILC subsets. We concluded that FOXO1 and FOXO3 cooperatively regulate ILC lineage specification at the progenitor level as well as the generation of mature ILCs.
- Published
- 2021
22. Ibrutinib induces rapid down-regulation of inflammatory markers and altered transcription of chronic lymphocytic leukaemia-related genes in blood and lymph nodes
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Ayla De Paepe, C. I. Edvard Smith, Jeanette Lundin, Masood Kamali-Moghaddam, Stephan Meinke, Anders Österborg, Aleksandra Krstic, Eva Kimby, K. Emelie M. Blomberg, Qing Wang, Georg Jaremko, Petter Höglund, Anna Berglöf, Marzia Palma, Lucia Peña Perez, Qiujin Shen, and Robert Månsson
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Male ,Chemokine ,medicine.medical_specialty ,Transcription, Genetic ,Down-Regulation ,Antineoplastic Agents ,Inflammation ,Lymphocyte Activation ,Peripheral blood mononuclear cell ,CD19 ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Piperidines ,hemic and lymphatic diseases ,Internal medicine ,medicine ,Humans ,Bruton's tyrosine kinase ,RNA, Neoplasm ,Aged ,B-Lymphocytes ,Hematology ,biology ,Gene Expression Regulation, Leukemic ,business.industry ,Adenine ,Gene Expression Profiling ,Middle Aged ,Leukemia, Lymphocytic, Chronic, B-Cell ,Pyrimidines ,chemistry ,030220 oncology & carcinogenesis ,Ibrutinib ,Cancer research ,biology.protein ,Pyrazoles ,Female ,Lymph Nodes ,Lymph ,Inflammation Mediators ,medicine.symptom ,business ,030215 immunology - Abstract
In chronic lymphocytic leukaemia (CLL) patients, treatment with the Bruton tyrosine kinase inhibitor ibrutinib induces a rapid shift of tumour cells from lymph nodes (LN) to peripheral blood (PB). Here, we characterized in depth the dynamics of ibrutinib-induced inflammatory, transcriptional and cellular changes in different compartments immediately after treatment initiation in seven relapsed/refractory CLL patients. Serial PB and LN samples were taken before start and during the first 29 days of treatment. Changes in plasma inflammation-related biomarkers, CLL cell RNA expression, B-cell activation and migration markers expression, and PB mononuclear cell populations were assessed. A significant reduction of 10 plasma inflammation markers, the majority of which were chemokines and not CLL-derived, was observed within hours, and was paralleled by very early increase of CD19+ circulating cells. At the RNA level, significant and continuous changes in transcription factors and signalling molecules linked to B-cell receptor signalling and CLL biology was observed in both PB and LN CLL cells already after 2 days of treatment. In conclusion, ibrutinib seems to instantly shut off an ongoing inflammatory response and interfere with diverse sensitive pathways in the LN.
- Published
- 2018
23. The histone chaperone NAP1L3 is required for haematopoietic stem cell maintenance and differentiation
- Author
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Mikael Altun, Shabnam Kharazi, Nadir Kadri, Aleksandra Krstic, Gözde Türköz, David Chang, Robert Månsson, Yaser Heshmati, Julian Walfridsson, Esmat Kamali Dolatabadi, Emma Wagner, Hong Qian, Theodora Boukoura, and Johan Boström
- Subjects
0301 basic medicine ,Nucleosome assembly ,Science ,Nerve Tissue Proteins ,Resting Phase, Cell Cycle ,Article ,03 medical and health sciences ,Mice ,Downregulation and upregulation ,Animals ,Humans ,Histone Chaperones ,Epigenetics ,Cell Proliferation ,Regulation of gene expression ,Homeodomain Proteins ,Multidisciplinary ,biology ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Cell Cycle Checkpoints ,Fetal Blood ,Hematopoietic Stem Cells ,Chromatin ,Cell biology ,Haematopoiesis ,030104 developmental biology ,Histone ,biology.protein ,Medicine ,Stem cell - Abstract
Nucleosome assembly proteins (NAPs) are histone chaperones with an important role in chromatin structure and epigenetic regulation of gene expression. We find that high gene expression levels of mouse Nap1l3 are restricted to haematopoietic stem cells (HSCs) in mice. Importantly, with shRNA or CRISPR-Cas9 mediated loss of function of mouse Nap1l3 and with overexpression of the gene, the number of colony-forming cells and myeloid progenitor cells in vitro are reduced. This manifests as a striking decrease in the number of HSCs, which reduces their reconstituting activities in vivo. Downregulation of human NAP1L3 in umbilical cord blood (UCB) HSCs impairs the maintenance and proliferation of HSCs both in vitro and in vivo. NAP1L3 downregulation in UCB HSCs causes an arrest in the G0 phase of cell cycle progression and induces gene expression signatures that significantly correlate with downregulation of gene sets involved in cell cycle regulation, including E2F and MYC target genes. Moreover, we demonstrate that HOXA3 and HOXA5 genes are markedly upregulated when NAP1L3 is suppressed in UCB HSCs. Taken together, our findings establish an important role for NAP1L3 in HSC homeostasis and haematopoietic differentiation.
- Published
- 2018
24. The chromatin-remodeling factor CHD4 is required for maintenance of childhood acute myeloid leukemia
- Author
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Shabnam Kharazi, Hong Qian, Gözde Türköz, David Chang, Aleksandra Krstic, Mikael Altun, Johan Boström, Yaser Heshmati, Aditya Harisankar, Robert Månsson, Julian Walfridsson, and Esmat Kamali Dolatabadi
- Subjects
0301 basic medicine ,Myeloid ,Cell growth ,Childhood Acute Myeloid Leukemia ,Myeloid leukemia ,Hematology ,Biology ,Cell cycle ,medicine.disease ,03 medical and health sciences ,Haematopoiesis ,Leukemia ,030104 developmental biology ,medicine.anatomical_structure ,hemic and lymphatic diseases ,medicine ,Cancer research ,Bone marrow - Abstract
Epigenetic alterations contribute to leukemogenesis in childhood acute myeloid leukemia and therefore are of interest for potential therapeutic strategies. Herein, we performed large-scale ribonucleic acid interference screens using small hairpin ribonucleic acids in acute myeloid leukemia cells and non-transformed bone marrow cells to identify leukemia-specific dependencies. One of the target genes displaying the strongest effects on acute myeloid leukemia cell growth and less pronounced effects on nontransformed bone marrow cells, was the chromatin remodeling factor CHD4 Using ribonucleic acid interference and CRISPR-Cas9 approaches, we showed that CHD4 was essential for cell growth of leukemic cells in vitro and in vivo Loss of function of CHD4 in acute myeloid leukemia cells caused an arrest in the G0 phase of the cell cycle as well as downregulation of MYC and its target genes involved in cell cycle progression. Importantly, we found that inhibition of CHD4 conferred anti-leukemic effects on primary childhood acute myeloid leukemia cells and prevented disease progression in a patient-derived xenograft model. Conversely, CHD4 was not required for growth of normal hematopoietic cells. Taken together, our results identified CHD4 as a potential therapeutic target in childhood acute myeloid leukemia.
- Published
- 2018
25. Handbook of Research on Urban-Rural Synergy Development Through Housing, Landscape, and Tourism
- Author
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Aleksandra Krstić-Furundžić, Aleksandra Djukić, Aleksandra Krstić-Furundžić, and Aleksandra Djukić
- Subjects
- Rural-urban relations--Case studies, Regional planning--Case studies, City planning--Case studies
- Abstract
As cities continue to grow with advancing technologies, the spatial and temporal gaps between rural and urban areas are shrinking, thereby requiring the sectors to interact with each other. While the prospect is to develop each area without hampering the newfound synergy between them, there are still many barriers and concerns that hinder this inevitable urban-rural relationship. The Handbook of Research on Urban-Rural Synergy Development Through Housing, Landscape, and Tourism is a pivotal reference source that focuses on the applications and challenges of creating cooperation between urban and rural areas along various fields. While highlighting topics including suburbanization, weekend-residence zones, and homeostasis, this publication is ideally designed for architects, sector managers, region developers, urban planners, urban developers, construction managers, urban studies professionals, academicians, researchers, and students seeking current research on lessening the urban-rural gap in both global and local contexts.
- Published
- 2020
26. Keeping Up with Technologies to Create the Cognitive City
- Author
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Aleksandra Krstic-Furundzic, Editor, Eva Vanista Lazarevic, Editor, Aleksandra Đukić, Editor, Aleksandra Krstic-Furundzic, Editor, Eva Vanista Lazarevic, Editor, and Aleksandra Đukić, Editor
- Abstract
This volume represents a selection of papers presented at the Third International Academic Conference on Places and Technologies, held at the Faculty of Architecture of the University of Belgrade, Serbia in April 2016. The conference brought together researchers, PhD students and practitioners, in order to create a platform for sharing knowledge in the fields of growth, new technologies, and the environment, as well as particular aspects of achieving the concept of cognitive city.The book will appeal primarily to members of the academic community in the fields of urban design, planning and architecture, engineering and technical sciences, and the humanities and social sciences. It will also be of interest to professional institutions and companies, governments, and NGOs, who will directly benefit from the knowledge presented here.
- Published
- 2019
27. The concerted action of E2-2 and HEB is critical for early lymphoid specification
- Author
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Lucía Peña-Pérez, Xiaoze Li, Robert Månsson, Miriam Hils, Aleksandra Krstic, Ayla De Paepe, Thibault Bouderlique, Christian Schachtrup, Charlotte Gustafsson, Shabnam Kharazi, Kristina Schachtrup, and Dan Holmberg
- Subjects
0301 basic medicine ,Mice ,Transcription Factor 4 ,0302 clinical medicine ,humoral immunity ,Gene Duplication ,Basic Helix-Loop-Helix Transcription Factors ,Immunology and Allergy ,Phylogeny ,Original Research ,0303 health sciences ,biology ,Repertoire ,030302 biochemistry & molecular biology ,lymphoid specification ,Lymphoid Progenitor Cells ,Acquired immune system ,Biological Evolution ,Cell biology ,Haematopoiesis ,Multigene Family ,Vertebrates ,Stem cell ,lcsh:Immunologic diseases. Allergy ,Immunology ,Evolution, Molecular ,03 medical and health sciences ,evolution ,Animals ,Cell Lineage ,Amino Acid Sequence ,Progenitor cell ,E-protein ,Gene ,030304 developmental biology ,Innate immune system ,Sequence Homology, Amino Acid ,Gnathostomata ,Hematopoietic Stem Cells ,biology.organism_classification ,hematopoiesis ,Lymphocyte Subsets ,Immunity, Humoral ,Mice, Inbred C57BL ,030104 developmental biology ,Gene Expression Regulation ,Humoral immunity ,Leukopoiesis ,lcsh:RC581-607 ,Sequence Alignment ,Spleen ,030215 immunology - Abstract
The apparition of adaptive immunity inGnathostomatacorrelates with the expansion of the E-protein family to encompass E2-2, HEB and E2A. Within the family, E2-2 and HEB are more closely evolutionarily related but their concerted action in hematopoiesis remains to be explored. Here we show that the combined disruption of E2-2 and HEB results in failure to express the early lymphoid program in CLPs and a near complete block in B-cell development. In the thymus, ETPs were reduced and T-cell development perturbed, resulting in reduced CD4 T- and increased γδ T-cell numbers. In contrast, HSCs, erythro-myeloid progenitors and innate immune cells were unaffected showing that E2-2 and HEB are dispensable for the ancestral hematopoietic lineages. Taken together, this E-protein dependence suggests that the appearance of the fullGnathostomataE-protein repertoire was critical to reinforce the gene regulatory circuits that drove the emergence and expansion of the lineages constituting humoral immunity.
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- 2018
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28. Active enhancer and chromatin accessibility landscapes chart the regulatory network of primary multiple myeloma
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Eva Hellqvist, Charlotte Gustafsson, Richard E. Davis, Ann Wallblom, Robert Månsson, Kenian Chen, Yin C. Lin, Rakesh Surapaneni, Lauren Metang, Yi Jin, Aleksandra Krstic, Ayla De Paepe, Yair M. Levy, and Hareth Nahi
- Subjects
0301 basic medicine ,Heterochromatin ,Immunology ,Gene regulatory network ,Biochemistry ,Translocation, Genetic ,Immunophenotyping ,03 medical and health sciences ,chemistry.chemical_compound ,Humans ,Cyclic adenosine monophosphate ,Cell Lineage ,Gene Regulatory Networks ,Enhancer ,skin and connective tissue diseases ,Gene ,Transcription factor ,Lymphoid Neoplasia ,biology ,Computational Biology ,Cell Biology ,Hematology ,Chromatin Assembly and Disassembly ,Chromatin ,Cell biology ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Enhancer Elements, Genetic ,chemistry ,biology.protein ,sense organs ,Antibody ,Multiple Myeloma ,Biomarkers - Abstract
Multiple myeloma (MM) is an aggressive cancer that originates from antibody-secreting plasma cells. Although genetically and transcriptionally well characterized, the aberrant gene regulatory networks that underpin this disease remain poorly understood. Here, we mapped regulatory elements, open chromatin, and transcription factor (TF) footprints in primary MM cells. In comparison with normal antibody-secreting cells, MM cells displayed consistent changes in enhancer activity that are connected to superenhancer (SE)-mediated deregulation of TF genes. MM cells also displayed widespread decompaction of heterochromatin that was associated with activation of regulatory elements and in a major subset of patients’ deregulation of the cyclic adenosine monophosphate pathway. Finally, building SE-associated TF-based regulatory networks allowed identification of several novel TFs that are central to MM biology. Taken together, these findings significantly add to our understanding of the aberrant gene regulatory network that underpins MM.
- Published
- 2018
29. Targets for Ibrutinib Beyond B Cell Malignancies
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Eva Kimby, Marzia Palma, A. Hamasy, Anders Österborg, C. I. E. Smith, Stephan Meinke, Robert Månsson, Anna Berglöf, and Aleksandra Krstic
- Subjects
Immunology ,Osteoclasts ,Reviews ,Lymphoma, Mantle-Cell ,Review ,Pharmacology ,Mice ,chemistry.chemical_compound ,Piperidines ,hemic and lymphatic diseases ,Atrial Fibrillation ,Agammaglobulinaemia Tyrosine Kinase ,medicine ,Animals ,Humans ,Bruton's tyrosine kinase ,Phosphorylation ,Adverse effect ,B cell ,biology ,Kinase ,business.industry ,Adenine ,General Medicine ,Protein-Tyrosine Kinases ,medicine.disease ,Leukemia, Lymphocytic, Chronic, B-Cell ,Lymphoproliferative Disorders ,Lymphoma ,Leukemia ,Pyrimidines ,medicine.anatomical_structure ,chemistry ,Ibrutinib ,biology.protein ,Pyrazoles ,Lymphoma, Large B-Cell, Diffuse ,Waldenstrom Macroglobulinemia ,Multiple Myeloma ,business ,Tyrosine kinase ,Protein Binding - Abstract
Ibrutinib (Imbruvica™) is an irreversible, potent inhibitor of Bruton's tyrosine kinase (BTK). Over the last few years, ibrutinib has developed from a promising drug candidate to being approved by FDA for the treatment of three B cell malignancies, a truly remarkable feat. Few, if any medicines are monospecific and ibrutinib is no exception; already during ibrutinib's initial characterization, it was found that it could bind also to other kinases. In this review, we discuss the implications of such interactions, which go beyond the selective effect on BTK in B cell malignancies. In certain cases, the outcome of ibrutinib treatment likely results from the combined inhibition of BTK and other kinases, causing additive or synergistic, effects. Conversely, there are also examples when the clinical outcome seems unrelated to inhibition of BTK. Thus, more specifically, adverse effects such as enhanced bleeding or arrhythmias could potentially be explained by different interactions. We also predict that during long‐term treatment bone homoeostasis might be affected due to the inhibition of osteoclasts. Moreover, the binding of ibrutinib to molecular targets other than BTK or effects on cells other than B cell‐derived malignancies could be beneficial and result in new indications for clinical applications.
- Published
- 2015
30. The chromatin-remodeling factor
- Author
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Yaser, Heshmati, Gözde, Türköz, Aditya, Harisankar, Shabnam, Kharazi, Johan, Boström, Esmat Kamali, Dolatabadi, Aleksandra, Krstic, David, Chang, Robert, Månsson, Mikael, Altun, Hong, Qian, and Julian, Walfridsson
- Subjects
Acute Myeloid Leukemia ,Oncogene Proteins, Fusion ,Chromatin Assembly and Disassembly ,Hematopoietic Stem Cells ,Article ,Cell Line ,Hematopoiesis ,Leukemia, Myeloid, Acute ,hemic and lymphatic diseases ,Disease Progression ,Neoplastic Stem Cells ,Tumor Cells, Cultured ,Humans ,RNA Interference ,RNA, Messenger ,RNA, Small Interfering ,Transcriptome ,Biomarkers ,Myeloid-Lymphoid Leukemia Protein ,Cell Proliferation ,Mi-2 Nucleosome Remodeling and Deacetylase Complex - Abstract
Epigenetic alterations contribute to leukemogenesis in childhood acute myeloid leukemia and therefore are of interest for potential therapeutic strategies. Herein, we performed large-scale ribonucleic acid interference screens using small hairpin ribonucleic acids in acute myeloid leukemia cells and non-transformed bone marrow cells to identify leukemia-specific dependencies. One of the target genes displaying the strongest effects on acute myeloid leukemia cell growth and less pronounced effects on nontransformed bone marrow cells, was the chromatin remodeling factor CHD4. Using ribonucleic acid interference and CRISPR-Cas9 approaches, we showed that CHD4 was essential for cell growth of leukemic cells in vitro and in vivo. Loss of function of CHD4 in acute myeloid leukemia cells caused an arrest in the G0 phase of the cell cycle as well as downregulation of MYC and its target genes involved in cell cycle progression. Importantly, we found that inhibition of CHD4 conferred anti-leukemic effects on primary childhood acute myeloid leukemia cells and prevented disease progression in a patient-derived xenograft model. Conversely, CHD4 was not required for growth of normal hematopoietic cells. Taken together, our results identified CHD4 as a potential therapeutic target in childhood acute myeloid leukemia.
- Published
- 2017
31. The use of recycled crushed clay brick aggregate for the purpose of forming a prefabricated façade panel
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Aleksandra Krstic-Furundzic, Tijana Vojnovic-Calic, and Dragica Jevtić
- Subjects
Course (architecture) ,Engineering ,Aggregate (composite) ,Cost effectiveness ,business.industry ,General Medicine ,Reuse ,7. Clean energy ,Civil engineering ,12. Responsible consumption ,Composite façade panel ,Prefabrication ,Demolition waste ,Sustainability ,Cladding technology ,11. Sustainability ,Demolition ,Facade ,Recycling ,business ,Embodied energy - Abstract
The contemporary 4R concept of waste management, in accordance with the globally spread trend of sustainability, promotes: reducing the amount of waste at the source, reusing of elements and their parts, recycling in order to produce raw material and recovering of the embodied energy. Discarded bricks from building demolition sites considered in this research could be reused, but also crushed in appropriate facilities and employed as aggregate in various cement composites. This paper investigates the possibility of using such recycled crushed clay brick material as aggregate in a prefabricated composite fa?ade panel with the face of stone, which can be used in a ventilated fa?ade system. It describes the production process of a pilot element, and further suggests the details of the fa?ade cladding technology concerning the proposed element, i.e. its production technology options, as well as transport and installation technologies. The paper further displays various design possibilities of the panel closely related to the production technology options, as well as observed aspects of sustainability and cost effectiveness relevant to the application of the proposed fa?ade panel. The research contributes to the contemporary course of sustainability within the construction industry by proposing an example of forming a new prefabricated building element using recycled building demolition waste material.
- Published
- 2017
32. Daylight performance of adapted industrial buildings
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Milena Stojkovic, Aleksandra Krstic Furundzic, and Mila Pucar
- Subjects
Architectural engineering ,Engineering ,Beograd ,daylight ,020209 energy ,prenamena ,0211 other engineering and technologies ,02 engineering and technology ,Civil engineering ,LEED ,021105 building & construction ,11. Sustainability ,0202 electrical engineering, electronic engineering, information engineering ,Belgrade ,Daylight ,Industrial heritage ,poslovne zgrade ,business.industry ,office buildings ,General Medicine ,Reflectivity ,Glazing ,Daylight factor ,13. Climate action ,Sustainability ,industrial reuse ,prirodno osvetljenje ,business ,industrijski objekti - Abstract
This paper assesses the potential of historical industrial buildings to be reused as office spaces. Belgrade’s industrial heritage has been classified according to the criteria that influence visual comfort, including glazing area, floor depth, and orientation. Daylight performance of two representative buildings has been analyzed using daylight factor, point in time illuminance and spatial daylight autonomy. Potential improvement strategies that would not have a negative impact on the historical character of buildings have then been discussed. Further studies include increased internal surface reflectance and introduction of roof-lights. The impact of roof-lights on the annual cooling and heating load has been addressed in parallel. Since LEED is the dominant sustainability assessment tool in Serbia, preliminary compliance with LEED v4 Daylight credit has been assessed for all options. The methodology and findings can be applied to a wide range of industrial buildings in similar climatic conditions. U radu je analizirana prenamena industrijskih objekata izgrađenih pre Drugog svetskog rata u poslovne. Industrijsko nasleđe Beograda je klasifikovano prema kriterijuma koji utiču na vizuelni komfor, uključujući veličinu prozora, dubinu osnove i orijentaciju objekata. Količina prirodne svetlosti je analizirana korišćenjem faktora dnevne osvetljenosti (daylight factor), nivoa osvetljenosti (point in time illuminance) i prostorne autonomije dnevne svetlosti (spatial daylight autonomy). Nakon analiza, razmatrane su potencijalne strategije za unapređenje nivoa osvetljenosti koje ne bi imale negativan uticaj na istorijski karakter zgrada. Dalje analize uključuju povećanje vrednosti refleksije površina prostorije i uvođenje krovnih prozora. Uticaj krovnih prozora na godišnju potrebnu energiju za grejanje i hlađenje objekata je takođe razmatrano. LEED je dominantan program za sertifikaciju poslovnih zgrada u Srbiji. Stoga, rad uključuje preliminarane analize svih opcija za usklađenost sa zahtevima LEED v4 kredita “Prirodno osvetljenje”. Metodologija i zaključci ovog istraživanja mogu se primeniti na širok spektar industrijskih objekata u sličnim klimatskim uslovima.
- Published
- 2016
33. Improvement of energy performances of existing buildings by application of solar thermal systems
- Author
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Aleksandra Krstic-Furundzic and Vesna Kosoric
- Subjects
Architectural engineering ,Engineering ,reduction of CO2 emissions ,Visual Arts and Performing Arts ,020209 energy ,architectural integration ,02 engineering and technology ,7. Clean energy ,Civil engineering ,020401 chemical engineering ,improvement of energy performances ,Architecture ,Thermal ,0202 electrical engineering, electronic engineering, information engineering ,solar thermal collectors application ,0204 chemical engineering ,lcsh:NA1-9428 ,Zero-energy building ,Settlement (structural) ,business.industry ,building refurbishment ,Urban Studies ,13. Climate action ,System integration ,lcsh:Architecture ,business ,Building envelope ,Energy (signal processing) - Abstract
Improvement of energy performances of the existing buildings in the suburban settlement Konjarnik in Belgrade, by the application of solar thermal systems is the topic presented in this paper. Hypothetical models of building improvements are created to allow the benefits of applying solar thermal collectors to residential buildings in Belgrade climate conditions to be estimated. This case study presents different design variants of solar thermal collectors integrated into a multifamily building envelope. The following aspects of solar thermal systems integration are analyzed in the paper: energy, architectural, ecological and economic. The results show that in Belgrade climatic conditions significant energy savings and reduction of CO2 emissions can be obtained with the application of solar thermal collectors.
- Published
- 2009
34. Pogled odozgo: vizuelno predstavljanje građana Srbije na Instagram profilu predsednika Aleksandra Vučića
- Author
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Aleksandra Krstić
- Subjects
vizuelni okviri ,Instagram ,predsednik ,Srbija ,mediji ,građani ,Political science - Abstract
Veliki broj političara koristi vizuelni medijski sadržaj za potrebe lične promocije, predizbornih kampanja i za komunikaciju sa biračima. Pored televizijskih snimaka i fotografija u štampanim medijima, političari sve više koriste vizuelno-centrične digitalne platforme, poput Instagrama, Jutjuba, Snepčeta i TikToka, kako bi doprli do šire javnosti i obezbedili veću podršku. Jedan broj političara redovno koristi Instagram kao mrežu koja beleži ogroman rast u odnosu na druge poznate društvene mreže. Instagram je svojom vizuelnošću omogućio političku hiperindividualizaciju, pa se čini da su inače distancirani predsednici, premijeri i drugi političari sve „običniji” i bliži građanima. Jedan od njih je i predsednik Srbije Aleksandar Vučić, čiji je zvanični Instagram profil @buducnostsrbijeav poslednjih godina postao važan izvor informacija mejnstrim medijima u Srbiji, pa i Javnom medijskom servisu. Imajući u vidu ovaj kontekst, u radu se istražuje kako se na Instagram profilu predsednika Srbije vizuelno reprezentuju građani Srbije i kao objekati kao izvor politike. Na osnovu kvantitativne i kvalitativne analize fotografija i video snimaka objavljenih u toku 2019. i 2021. godine, identifikuju se glavni vizuelni okviri u kojima se predstavljaju građani Srbije, kao i vizuelne strategije na osnovu kojih Aleksandar Vučić stupa u interakciju sa običnim ljudima, uspostavlja odnose sa pojedinim društvenim i profesionalnim grupama, a istovremeno šalje određene političke poruke.
- Published
- 2022
- Full Text
- View/download PDF
35. Very Early Effects of Ibrutinib on Tumor and Immune Cells in Blood and Lymph Nodes in Relapsed or Refractory Chronic Lymphocytic Leukemia (CLL) Patients
- Author
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Masood Kamali-Moghaddam, Eva Kimby, Stephan Meinke, Anders Österborg, Aleksandra Krstic, Anna Berglöf, Robert Månsson, Georg Jaremko, Edvard Smith, Qing Wang, Marzia Palma, Petter Höglund, Qiujin Shen, Jeanette Lundin, and Emelie K.M. Blomberg
- Subjects
medicine.medical_specialty ,Immunology ,Biochemistry ,Gastroenterology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Internal medicine ,Medicine ,Cytotoxic T cell ,CD20 ,CD40 ,biology ,business.industry ,CD23 ,Cell Biology ,Hematology ,Natural killer T cell ,chemistry ,030220 oncology & carcinogenesis ,Ibrutinib ,biology.protein ,CD5 ,business ,CD8 ,030215 immunology - Abstract
In this study we analyzed the very early effects of the Bruton's tyrosine kinase (BTK) inhibitor ibrutinib on tumor and immune cells in 7 symptomatic, relapsed or refractory CLL patients during the first four weeks of treatment. Five of the patients had Rai stage IV at study entry and four patients had 17p deletion or TP53 mutation. Median number of previous treatment regimens was 2 (range 1-4). Peripheral blood (PB) samples were collected before (< 1 week) treatment start and at six different time points during the treatment (9 hours after treatment start on day 1; on day 2; day 4; day 8; day 15 and day 29). Fine needle aspiration of two pathological lymph nodes (LN) identified by ultrasound was performed before (< 1 week) treatment start and at day 2, day 8 and day 29. Flow-cytometry was performed to analyze the changes in the peripheral blood mononuclear cell populations in PB including CLL cells, Natural Killer (NK) cells, monocytes, dendritic cells (DC) and T cells memory subsets, helper subpopulations (Ths) and regulatory T cells (Tregs). Moreover, changes in expression of 18 B-cell activation and migration markers on CLL cells as well as T-cell activation and proliferation markers, were analyzed in paired LN and PB samples. Finally, plasma levels of 92 inflammation-related protein biomarkers were assessed by Multiplex Proximity Extension Assay (PEA). In six out of seven patients the size of the LN decreased gradually during the four weeks of observation, achieving complete clinical remission in three patients and partial remission in three other. In 5 evaluated patients, the CLL cell counts in PB increased already 9 hours after treatment start (fold increase 1.36-2.84). In all the patients, CLL cells were higher at day 2 and 8 compared to baseline (p=0.02), and decreased by day 29 to levels not significantly different from the baseline. Over the four weeks period CD4+ cells increased (p=0.03), while CD8+, NK, and NKT cells remained stable. The distribution of the CD4+ and CD8+ memory cell subsets remained unchanged. Th1 cells increased (p=0.01) while Th2, Th17 and Tregs were stable. Expression of Programmed cell death protein 1 (PD-1) and Cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) in T cells was unaffected. No effect was seen on CLL apoptosis. Proliferating (Ki67+) CLL cells, which at baseline varied between 1.2-10.8%, were not detected in blood after 1 week of treatment (p=0.0006). Ki67+ T cells were also eliminated (p=0.0007), but with a delayed kinetics (4 weeks). Paired LN and PB samples were screened for changes in 18 surface markers relevant for B-cell activation and migration. With the exception of CD23, whose expression was lower in PB compared to LN (p=0.02), no difference was observed in the expression of the other analyzed surface markers on CLL cells from the two different tumor compartments at baseline. CD5 expression remained stable during treatment, albeit decreasing significantly by day 29 in PB (p=0.02). Expression of CD20 decreased in both compartments at day 8 (p=0.02) and CD40 decreased at day 8 only in PB (p=0.02). CD69 expression (MFI) decreased both in PB and LN by day 8 (p=0.02), while the percentage of positive cells significantly dropped already at day 2 in PB (p=0.02) and from day 8 in LN (p=0.03). CD23 MFI decreased in the LN compartment already at day 2 (p=0.02), but the percentage of positive cells was significantly lower only at day 8 (p=0.03). Compared to LN, CD23 expression was lower in PB before treatment and therefore the significant drop both in MFI and percentage of positive cells was seen only after 4 weeks (p=0.02). No change in the expression of CD49d was observed. In 5 evaluable patients, the plasmacytoid DCs, undetectable at baseline, increased during treatment (p=0.06), while CD16+SLAN+monocytes decreased (p=0.06). Finally, plasma levels of 50 molecules were significantly changed at ≥ 1 time point during treatment. With the exception of CST5 and IL-17C, which were increased, the residual 48 proteins were all down-regulated, some of them (e.g. CCL3 and CCL4) already by 9 hours. The majority of the cytokines with significantly reduced levels are pro-inflammatory molecules. In conclusion, these data indicate that ibrutinib causes major changes both in CLL and bystander cells as well as in the levels of several inflammation-related protein biomarkers already shortly after treatment initiation. Disclosures Lundin: Janssen: Research Funding. Kimby:Gilead: Honoraria, Other: honoraria for educational lecture in meeting sponsored by Gilead; Roche: Other: Honoraria for lecture in educational meetings; Pfizer: Other: Research grant; Celgene: Other: Honoraria for lecture. educational meeting; Jansen: Membership on an entity's Board of Directors or advisory committees, Other: Honoraria for lecture at educational session. Österborg:Janssen: Honoraria, Research Funding.
- Published
- 2016
36. Numerical modeling & Experimental validation
- Author
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Aleksandra Krstic-Furundzic
- Published
- 2013
37. Signaling pathways implicated in hematopoietic progenitor cell proliferation and differentiation
- Author
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Diana, Bugarski, Aleksandra, Krstic, Slavko, Mojsilovic, Marija, Vlaski, Marijana, Petakov, Gordana, Jovcic, Nevenka, Stojanovic, and Pavle, Milenkovic
- Subjects
Erythroid Precursor Cells ,Male ,Myelopoiesis ,Cell Survival ,NF-kappa B ,Protein-Tyrosine Kinases ,Hematopoietic Stem Cells ,Colony-Forming Units Assay ,Mice ,Phosphatidylinositol 3-Kinases ,Mice, Inbred CBA ,Animals ,Erythropoiesis ,Mitogen-Activated Protein Kinases ,Protein Kinase Inhibitors ,Myeloid Progenitor Cells ,Cell Proliferation ,Phosphoinositide-3 Kinase Inhibitors ,Signal Transduction - Abstract
The objective of this study was to investigate the signal transduction pathways associated with the clonal development of myeloid and erythroid progenitor cells. The contribution of particular signaling molecules of protein tyrosine kinases (PTKs), mitogen-activated protein (MAP) kinase, and PI-3 kinase signaling to the growth of murine bone marrow colony forming unit-granulocyte-macrophage (CFU-GM) and erythroid (burst forming unit-erythroid [BFU-E] and colony forming unit-erythroid [CFU-E]) progenitors was examined in studies performed in the presence or absence of specific signal transduction inhibitors. The results clearly pointed to different signal transducing intermediates that are involved in cell proliferation and differentiation depending on the cell lineage, as well as on the progenitors' maturity. Lineage-specific differences were obtained when chemical inhibitors specific for receptor- or nonreceptor-PTKs, as well as for the main groups of distinctly regulated MAPK cascades, were used because all of these compounds suppressed the growth of erythroid progenitors, with no major effects on myeloid progenitors. At the same time, differential involvement of MEK/extracellular signal-regulated kinase (ERK) MAPK transduction pathway was observed in the proliferation and/or differentiation of early, BFU-E, and late, CFU-E, erythroid progenitor cells. The results also demonstrated that phosphatydylinositol (PI)-3 kinase and nuclear factor kappaB (NF-kappaB) transcriptional factor were required for maintenance of both myeloid and erythroid progenitor cell function. Overall, the data obtained indicated that committed hematopoietic progenitors express a certain level of constitutive signaling activity that participates in the regulation of normal steady-state hematopoiesis and point to the importance of evaluating the impact of signal transduction inhibitors on normal bone marrow when used as potential therapeutic agents.
- Published
- 2007
38. The immunomodulatory activity of human mesenchymal stem cells is related to different tissue origin
- Author
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Drenka, Trivanovic, primary, Vesna, Ilic, primary, Jelena, Kocic, primary, Aleksandra, Krstic, primary, Slavko, Mojsilovic, primary, Ivana, Okic-Djordjevic, primary, Juan Francisco, Santibanez, primary, Diana, Bugarski, primary, and Gordana, Jovcic, primary
- Published
- 2013
- Full Text
- View/download PDF
39. Eliminisanje sredisnjeg coveka - Peter Dahlgren: Media and political engagement: citizens, communication and democracy, Cambridge university press, 2009
- Author
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Aleksandra, Krstic, primary
- Published
- 2012
- Full Text
- View/download PDF
40. Cultivation of hamster bone marrow haematopoietic stem and progenitor cells
- Author
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Milica, Kovacevic-Filipovic, primary, Ivana, Okic, additional, Tanja, Petricevic, additional, S., Mojsilovic, additional, Aleksandra, Krstic, additional, Gordana, Jovcic, additional, Diana, Bugarski, additional, P., Milenkovic, additional, Marijana, Petakov, additional, Anita, Radovanovic, additional, Tatjana, Bozic, additional, and Z., Ivanovic, additional
- Published
- 2010
- Full Text
- View/download PDF
41. A study on oxidative stress and complete blood count of sheep bred in the area exposed to depleted uranium (DU) ammunition
- Author
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Slavoljub, Jovic, primary, Jelena, Aleksic, additional, Aleksandra, Krstic, additional, Jelka, Stevanovic, additional, Milica, Kovacevic-Filipovic, additional, Suncica, Borozan, additional, Tatjana, Bozic, additional, and Dragana, Popovic, additional
- Published
- 2009
- Full Text
- View/download PDF
42. Effects of IL-17 on functional activity of peripheral blood cells
- Author
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Marija, Vlaski, primary, Aleksandra, Krstic, additional, Gordana, Jovcic, additional, Diana, Bugarski, additional, Marijana, Petakov, additional, Nevenka, Stojanovic, additional, and Pavle, Milenkovic, additional
- Published
- 2004
- Full Text
- View/download PDF
43. IoT System for Detecting the Condition of Rotating Machines Based on Acoustic Signals
- Author
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Milutin Radonjić, Sanja Vujnović, Aleksandra Krstić, and Žarko Zečević
- Subjects
acoustic signals ,classification ,condition detection ,IoT ,neural networks ,rotary machines ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Modern predictive maintenance techniques have been significantly improved with the development of Industrial Internet of Things solutions which have enabled easier collection and analysis of various data. Artificial intelligence-based algorithms in combination with modular interconnected architecture of sensors, devices and servers, have resulted in the development of intelligent maintenance systems which outperform most traditional machine maintenance approaches. In this paper, a novel acoustic-based IoT system for condition detection of rotating machines is proposed. The IoT device designed for this purpose is mobile and inexpensive and the algorithm developed for condition detection consists of a combination of discrete wavelet transform and neural networks, while a genetic algorithm is used to tune the necessary hyperparameters. The performance of this system has been tested in a real industrial setting, on different rotating machines, in an environment with strong acoustic pollution. The results show high accuracy of the algorithm, with an average F1 score of around 0.99 with tuned hyperparameters.
- Published
- 2022
- Full Text
- View/download PDF
44. PS2-033. IL-17 stimulates expression of MMP-9 and uPAR in granulocytes
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Ivana, Okić <ce:cross-out>D</ce:cross-out>or <ce:cross-out>d</ce:cross-out>ević, Aleksandra, Krstić, Slavko, Mojsilović, Jelena, Kocić, Juan, Santibañez F., Gordana, Jovčić, and Diana, Bugarski
- Published
- 2011
- Full Text
- View/download PDF
45. Energy Balance, Cost and Architectural Design Features of 24 Building Integrated Photovoltaic Projects Using a Modelling Approach
- Author
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Cihan Gercek, Mirjana Devetaković, Aleksandra Krstić-Furundžić, and Angèle Reinders
- Subjects
building-integrated photovoltaics ,energy consumption ,architecture ,design ,cost ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This paper presents the energy balance, architectural design features and cost aspects of 24 building integrated photovoltaic (BIPV) projects in three different contexts, namely BIPV in residential, office and historical buildings. These BIPV projects have been modelled and evaluated for different geographic locations because the European Energy Performance of Buildings Directive (2018/844/EU) has resulted in country-specific regulations and situations aimed towards the reduction in energy consumption, and hence the CO2 emissions of built environments. Moreover, the geographical variation of irradiation affects the performance of different BIPV projects on different locations. The results of our study show that the return of investment of BIPV projects across 12 countries took (on average) 13.3 years. Furthermore, the residential projects —as compared to non-residential buildings—were mostly energy plus buildings with an average self-sufficiency of 110% due to their low energy consumption. In conclusion, most BIPV projects resulted in realistic energy performances (on average: 761 kWh/kWp.year), low payback times (10 years for residential and office buildings), and modelled unique design features.
- Published
- 2020
- Full Text
- View/download PDF
46. Photovoltaics on Landmark Buildings with Distinctive Geometries
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Mirjana Devetaković, Djordje Djordjević, Milan Radojević, Aleksandra Krstić-Furundžić, Bogdan-Gabriel Burduhos, Georgios Martinopoulos, Mircea Neagoe, and Gabriele Lobaccaro
- Subjects
architecture ,landmark buildings ,photovoltaic ,BIPV ,BAPV ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This review study, framed in the Work group 4 “Photovoltaic in built environment” within the COST Action PEARL PV, CA16235, aims to examine applications of integrated and applied photovoltaic technologies on ten landmark buildings characterised by distinctive geometries, highlighting the aesthetics of their architecture and quality of PV integration based on a proposed set of seven criteria. The selected building samples cover a large design diversity related to the quality of PV systems integration into building envelope that could serve as a basis for general guidelines of best architectural and technological practice. After introducing the problem and defining the research methodology, an analysis of ten landmark buildings is presented, as representative models of aesthetics of their architecture, photovoltaic integration and implementation and energy performance. The study concludes with the main characteristics of photovoltaic integration on landmark buildings. The paper is intended to support both engineers and architects in comprehending the convergent development of contemporary architecture and photovoltaic technology, as well as the need for a closer collaboration, sometimes resulting in architectural masterworks that promote the diffusion of photovoltaics to the public.
- Published
- 2020
- Full Text
- View/download PDF
47. Overview of Bists State of the Art, Models and Applications
- Author
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Kalogirou Soteris, Mervyn Smyth, Luis Braganca, Werner Platzer, Aleksandra Krstic-Furundzic, Daniel Chemisana, Alberto Coronas, Aggelos Zacharopoulos, Manolis Souliotis, Brian Norton, David Kennedy, Gerald Leindecker, Jan Belis, Aleksander Georgiev, George Xydis, Christian Christofari, Gilles Notton, Yiannis Tripanagnostopoulos, Guedi Capeluto, Galit Shiff, Adolfo Palombo, Roberto Fedrizzi, Rosita Norvaisiene, Simon Paul Borg, Vincent Buhagiar, René Wansdronk, Dorota Chwieduk, Mariusz Fitowski, Joao Ramos, Manuela Almeida, Milorad Bojic, Muhsin Kilic, Andy Ford, Rumen Popov, Rafaela Agathokleous, Constantinos Christofi, Georgios Florides, Charalambos Tsioutis, Andreas Savvides, Constantinos Vasiliades, Christoph Cappel, Christoph Maurer, Christophis Koroneos, Aritra Ghosh, Donal Keys, Tim Oleary, Sarah McCormack, Mick Mckeever, Lacour Ayompe, Carlos Ochoa, Annamaria Buonomano, Tamasauskas Rokas, Artur Rusowicz, Laura Aelenei, Ricardo Mateus, Sandra Montaro da Silva, Eliseu Ribeiro, Ivan Miletic, Danijela Nikolic, Jasna Radulovic, Mirko Blagojebic, Tatjana Kosic, Cabeza, Luisa F., Iñigo Iparraguirre, Chrysovalantou Lamnatou, Stefan Remke, Lorenzo Jose Lopez, Jayanta Deb Mondol, Trevor Hyde, Andreas Athienitis, and James Russell
48. Facade 2018 - Adaptive!
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Andreas Luible, Susanne Gosztonyi, Mauro Overend, Laura Aelenei, Aleksandra Krstic-Furundzic, Marco Perino, Francesco Goya, Frank Wellershoff, Shady Attia, Uta Pottgiesser, Ulrich Knaack, and Christian Louter
49. SKIP Downregulation Increases TGF-β1-Induced Matrix Metalloproteinase-9 Production in Transformed Keratinocytes
- Author
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Jelena Kocić, Victor Villar, Aleksandra Krstić, and Juan F. Santibanez
- Subjects
Medicine ,Science - Abstract
Transforming growth factor-beta (TGF-β1) is a potent inductor of matrix metalloproteinase-9 (MMP-9) in transformed cells. Recently, Ski-interacting protein (SKIP) has been described as a regulator of TGF-β1 signal transduction, but its role in the induction of cell malignance by TGF-β1 has not been fully elucidated so far. In the present study, we analyzed the role of SKIP on TGF-β1-induced MMP-9 production. Mouse transformed keratinocytes (PDV) were stably transfected with SKIP antisense construct. We observed that SKIP depletion provoked an enhancement in the expression of MMP-9 in response to TGF-β1 treatment. The downregulation of SKIP produced an enhancement in TGF-β1-activated ERK1,2 MAP kinase as well as increased transactivation of downstream Elk1 transcription factor. The increased MMP-9 production in response to TGF-β1 was dependent of MAPK activation as PD98059, an MEK inhibitor, reduced MMP-9 expression in SKIP antisense transfected cells. Thus, we propose SKIP as a regulatory protein in TGF-β1-induced MMP-9 expression acting by controlling ERK1,2 signaling in transformed cells.
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- 2012
- Full Text
- View/download PDF
50. Structural aspects of adaptive facades
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Kozłowski, Marcin, Bedon, Chiara, Honfi, Dániel, Jordão, Sandra, Machalická, Klára, Santos, Filipe, Aleksandra Krstic-Furundzic, Milena Vukmirovic, Eva Vanista Lazarevic, Aleksandra Dukic, Kozłowski, Marcin, Bedon, Chiara, Honfi, Dániel, Jordão, Sandra, Machalická, Klára, and Santos, Filipe
- Subjects
Testing methods ,Numerical modelling ,Structural requirement ,Metrics ,Metric ,Adaptive system ,Adaptive systems ,Structural requirements ,Testing method - Abstract
Adaptive facade systems are getting increasingly common in modern buildings envelopes. Their adaptive behaviour poses special requirements concerning structural aspects of the façade. In the present paper, an overview of the possible classification of structurally adaptive facades and related requirements is given. Furthermore, it is discussed how changes in their structural characteristics needs to be properly taken into account when testing and modelling their performance. The main challenges of the aforementioned aspects are hence briefly highlighted in the paper.
- Published
- 2018
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