17 results on '"Albuz B"'
Search Results
2. with epilepsy
- Author
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Fassio, A, Esposito, A, Kato, M, Saitsu, H, Mei, D, Marini, C, Conti, V, Nakashima, M, Okamoto, N, Turker, AO, Albuz, B, Gunduz, CNS, Yanagihara, K, Belmonte, E, Maragliano, L, Ramsey, K, Balak, C, Siniard, A, Narayanan, V, Ohba, C, Shiina, M, Ogata, K, Matsumoto, N, Benfenati, F, and Guerrini, R
- Subjects
developmental epileptic encephalopathy ,v-ATPase ,lysosomes ,neurite ,elongation ,synapse - Abstract
V-type proton (H+) ATPase (v-ATPase) is a multi-subunit proton pump that regulates pH homeostasis in all eukaryotic cells; in neurons, v-ATPase plays additional and unique roles in synapse function. Through whole exome sequencing, we identified de novo heterozygous mutations (p. Pro27Arg, p. Asp100Tyr, p. Asp349Asn, p. Asp371Gly) in ATP6V1A, encoding the A subunit of vATPase, in four patients with developmental encephalopathy with epilepsy. Early manifestations, observed in all patients, were developmental delay and febrile seizures, evolving to encephalopathy with profound delay, hypotonic/dyskinetic quadriparesis and intractable multiple seizure types in two patients (p. Pro27Arg, p. Asp100Tyr), and to moderate delay with milder epilepsy in the other two (p. Asp349Asn, p. Asp371Gly). Modelling performed on the available prokaryotic and eukaryotic structures of v-ATPase predicted p. Pro27Arg to perturb subunit interaction, p. Asp100Tyr to cause steric hindrance and destabilize protein folding, p. Asp349Asn to affect the catalytic function and p. Asp371Gly to impair the rotation process, necessary for proton transport. We addressed the impact of p. Asp349Asn and p. Asp100Tyr mutations on ATP6V1A expression and function by analysing ATP6V1A-overexpressing HEK293T cells and patients' lymphoblasts. The p. Asp100Tyr mutant was characterized by reduced expression due to increased degradation. Conversely, no decrease in expression and clearance was observed for p. Asp349Asn. In HEK293T cells overexpressing either pathogenic or control variants, p. Asp349Asn significantly increased LysoTracker (R) fluorescence with no effects on EEA1 and LAMP1 expression. Conversely, p. Asp100Tyr decreased both LysoTracker (R) fluorescence and LAMP1 levels, leaving EEA1 expression unaffected. Both mutations decreased v-ATPase recruitment to autophagosomes, with no major impact on autophagy. Experiments performed on patients' lymphoblasts using the LysoSensor (TM) probe revealed lower pH of endocytic organelles for p. Asp349Asn and a reduced expression of LAMP1 with no effect on the pH for p. Asp100Tyr. These data demonstrate gain of function for p. Asp349Asn characterized by an increased proton pumping in intracellular organelles, and loss of function for p. Asp100Tyr with decreased expression of ATP6V1A and reduced levels of lysosomal markers. We expressed p. Asp349Asn and p. Asp100Tyr in rat hippocampal neurons and confirmed significant and opposite effects in lysosomal labelling. However, both mutations caused a similar defect in neurite elongation accompanied by loss of excitatory inputs, revealing that altered lysosomal homeostasis markedly affects neurite development and synaptic connectivity. This study provides evidence that de novo heterozygous ATP6V1A mutations cause a developmental encephalopathy with a pathomechanism that involves perturbations of lysosomal homeostasis and neuronal connectivity, uncovering a novel role for v-ATPase in neuronal development.
- Published
- 2018
3. Congenital Central Hypothyroidism Caused by a Novel Thyroid-Stimulating Hormone-Beta Subunit Gene Mutation in Two Siblings
- Author
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Özhan B, Boz Anlaş Ö, Sarıkepe B, Albuz B, and Semerci Gündüz N
- Subjects
endocrine system ,Adolescent ,Congenital Hypothyroidism/*genetics ,Female ,Humans ,Male ,Mutation ,Siblings ,Thyrotropin, beta Subunit/*genetics ,Turkey ,Young Adult - Abstract
Congenital central hypothyroidism (CCH) is a very rare disease. Alterations in pituitary development genes as well as mutations of immunoglobulin superfamily member 1 and transducin β-like protein 1 can result in CCH and multiple pituitary hormone deficiencies. However, mutations of the thyrotropin-releasing hormone receptor or thyroid-stimulating hormone-beta (TSHB) gene are responsible for isolated CCH. In this paper, we present the cases of two siblings with a novel mutation of TSHB. Direct sequencing of the coding regions and exon/intron boundaries of the TSHB gene revealed two homozygous nucleotides changes. One of them was c.40A>G (rs10776792) which is a very common variation that is also seen in healthy individuals, the other was c.94G>A at codon 32 of exon 2 which resulted in a change from glutamic acid to lysine (p.E32K). Both patients were homozygous and the parents were heterozygous.
- Published
- 2017
4. Congenital Central Hypothyroidism Caused by a Novel Thyroid-Stimulating
- Author
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Ozhan, B, Anlas, OB, Sarikepe, B, Albuz, B, and Gunduz, NS
- Subjects
endocrine system ,Hypothyroidism ,congenital ,thyrotropin deficiency - Abstract
Congenital central hypothyroidism (CCH) is a very rare disease. Alterations in pituitary development genes as well as mutations of immunoglobulin superfamily member 1 and transducin beta-like protein 1 can result in CCH and multiple pituitary hormone deficiencies. However, mutations of the thyrotropin-releasing hormone receptor or thyroid-stimulating hormone-beta (TSHB) gene are responsible for isolated CCH. In this paper, we present the cases of two siblings with a novel mutation of TSHB. Direct sequencing of the coding regions and exon/intron boundaries of the TSHB gene revealed two homozygous nucleotides changes. One of them was c. 40A> G (rs10776792) which is a very common variation that is also seen in healthy individuals, the other was c. 94G>A at codon 32 of exon 2 which resulted in a change from glutamic acid to lysine (p. E32K). Both patients were homozygous and the parents were heterozygous.
- Published
- 2017
5. Relationship between the DAT1 gene and the effects of methylphenidate administration in adult attention deficit hyperactivity disorder: a magnetic resonance spectroscopy study
- Author
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Inci Kenar AN, Ünal GA, Güler H, Albuz B, Kıroğlu Y, Erdal ME, and Herken H
- Subjects
Adult ,Male ,Aspartic Acid ,Dopamine Plasma Membrane Transport Proteins ,Magnetic Resonance Spectroscopy ,Adolescent ,Genotype ,Administration, Oral ,Prefrontal Cortex ,Minisatellite Repeats ,Middle Aged ,Creatine ,Gyrus Cinguli ,Polymorphism, Single Nucleotide ,Corpus Striatum ,Choline ,Young Adult ,Attention Deficit Disorder with Hyperactivity ,Alleles ,Aspartic Acid/analogs & derivatives/blood ,Attention Deficit Disorder with Hyperactivity/diagnostic imaging/*drug therapy ,Cerebellum/diagnostic imaging/metabolism ,Choline/blood ,Corpus Striatum/diagnostic imaging/metabolism ,Creatine/blood ,Dopamine Plasma Membrane Transport Proteins/*genetics ,Female ,Gyrus Cinguli/diagnostic imaging/metabolism ,Humans ,Methylphenidate/*administration & dosage ,Cerebellum ,mental disorders ,Methylphenidate - Abstract
OBJECTIVE: This study investigated the relationship between DAT1 gene polymorphisms and the effects of methylphenidate (MPH) administration on N-acetyl aspartate (NAA), creatine (Cr), and choline (Cho) levels in the anterior cingulate cortex, prefrontal cortex, striatum, and cerebellum in adult patients with attention deficit hyperactivity disorder (ADHD). This was the first study to investigate the relationship between DAT gene variable number tandem repeat (VNTR) polymorphisms and the responses of brain metabolites to MPH. PATIENTS AND METHODS: Samples in this study were collected from 60 patients aged between 18 and 60 years with ADHD according to DSM-IV criteria. Genetic analysis of DAT1 gene polymorphisms was carried out using blood samples obtained after a detailed clinical evaluation. Levels of NAA, Cr, and Cho were measured in the anterior cingulate cortex, prefrontal cortex, striatum, and cerebellum by magnetic resonance spectroscopy. After this evaluation, 10 mg of MPH was given orally to patients, and the levels of the same metabolites were measured 30 min later. RESULTS: No marked difference in NAA, Cr, or Cho levels was detected before and after MPH administration with respect to the DAT1 gene VNTR polymorphisms. A considerable increase in Cr levels in the cerebellum was identified after MPH administration in individuals with the 10/10 repeat genotype as the DAT1 VNTR polymorphism (p=0.008). CONCLUSIONS: An increase in the previously decreased blood flow after MPH therapy may induce an increase in creatine levels in patients with the 10/10 repeat genotype. Our results thus suggest that the 10R allele as the DAT1 gene VNTR polymorphism might be associated with MPH-related changes in brain metabolites in adults with ADHD.
- Published
- 2016
6. magnetic resonance spectroscopy study
- Author
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Kenar, ANI, Unal, GA, Guler, H, Albuz, B, Kiroglu, Y, Erdal, ME, and Herken, H
- Subjects
nervous system ,mental disorders ,Magnetic resonance spectroscopy ,Adult attention deficit hyperactivity disorder ,DAT ,Methylphenidate - Abstract
NORMALITIES; ASSOCIATION; SAMPLE OBJECTIVE: This study investigated the relationship between DAT1 gene polymorphisms and the effects of methylphenidate (MPH) administration on N-acetyl aspartate (NAA), creatine (Cr), and choline (Cho) levels in the anterior cingulate cortex, prefrontal cortex, striatum, and cerebellum in adult patients with attention deficit hyperactivity disorder (ADHD). This was the first study to investigate the relationship between DAT gene variable number tandem repeat (VNTR) polymorphisms and the responses of brain metabolites to MPH.
- Published
- 2016
7. Relationship between the DAT1 gene and the effects of methylphenidate administration in adult attention deficit hyperactivity disorder: a magnetic resonance spectroscopy study
- Author
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Kenar, A. N. Inci, Unal, G. A., Guler, H., Albuz, B., Kiroglu, Y., Mehmet Emin Erdal, and Herken, H.
- Subjects
Male ,Magnetic Resonance Spectroscopy ,genetic association ,genotype ,oral drug administration ,Administration, Oral ,methylphenidate ,variable number of tandem repeat ,genetic analysis ,Minisatellite Repeats ,Choline ,N-acetylaspartate ,analogs and derivatives ,single nucleotide polymorphism ,Cerebellum ,middle aged ,genetics ,dopamine transporter ,prefrontal cortex ,adult ,cingulate gyrus ,drug effect ,allele ,female ,young adult ,Adolescent ,diagnostic imaging ,metabolite ,attention deficit disorder ,Gyrus Cinguli ,Polymorphism, Single Nucleotide ,Article ,blood ,mental disorders ,Humans ,human ,corpus striatum ,Alleles ,nuclear magnetic resonance spectroscopy ,anterior cingulate ,Aspartic Acid ,Dopamine Plasma Membrane Transport Proteins ,DAT ,Creatine ,major clinical study ,Adult attention deficit hyperactivity disorder ,DNA polymorphism ,Attention Deficit Disorder with Hyperactivity ,genetic variation ,SLC6A3 protein, human ,metabolism - Abstract
OBJECTIVE: This study investigated the relationship between DAT1 gene polymorphisms and the effects of methylphenidate (MPH) administration on N-acetyl aspartate (NAA), creatine (Cr), and choline (Cho) levels in the anterior cingulate cortex, prefrontal cortex, striatum, and cerebellum in adult patients with attention deficit hyperactivity disorder (ADHD). This was the first study to investigate the relationship between DAT gene variable number tandem repeat (VNTR) polymorphisms and the responses of brain metabolites to MPH. PATIENTS AND METHODS: Samples in this study were collected from 60 patients aged between 18 and 60 years with ADHD according to DSM-IV criteria. Genetic analysis of DAT1 gene polymorphisms was carried out using blood samples obtained after a detailed clinical evaluation. Levels of NAA, Cr, and Cho were measured in the anterior cingulate cortex, prefrontal cortex, striatum, and cerebellum by magnetic resonance spectroscopy. After this evaluation, 10 mg of MPH was given orally to patients, and the levels of the same metabolites were measured 30 min later. RESULTS: No marked difference in NAA, Cr, or Cho levels was detected before and after MPH administration with respect to the DAT1 gene VNTR polymorphisms. A considerable increase in Cr levels in the cerebellum was identified after MPH administration in individuals with the 10/10 repeat genotype as the DAT1 VNTR polymorphism (p=0.008). CONCLUSIONS: An increase in the previously decreased blood flow after MPH therapy may induce an increase in creatine levels in patients with the 10/10 repeat genotype. Our results thus suggest that the 10R allele as the DAT1 gene VNTR polymorphism might be associated with MPH-related changes in brain metabolites in adults with ADHD.
8. Nonacute Subdural Hematoma Evacuation Using a Rigid Endoscopy System: A Clinical Study.
- Author
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Egemen E, Dere UA, Celtikci E, Nehir A, Dogruel Y, Sahinoglu D, Asar R, Bakirarar B, Albuz B, Coskun ME, and Yakar F
- Subjects
- Humans, Female, Male, Aged, Middle Aged, Aged, 80 and over, Treatment Outcome, Endoscopy methods, Adult, Hematoma, Subdural surgery, Hematoma, Subdural diagnostic imaging, Hematoma, Subdural, Chronic surgery, Hematoma, Subdural, Chronic diagnostic imaging, Neuroendoscopy methods, Neuroendoscopy instrumentation, Drainage methods
- Abstract
Aim: To determine the clinical relevance of a rigid endoscopy surgical method for subdural hematomas, as previously described in a cadaver study., Material and Methods: Between May 2021 and September 2023, 21 patients underwent subdural hematoma drainage using a 0-degree rigid endoscope. Traumatic acute subdural hematomas were excluded. The demographic data of the patients, antiplatelet/ antiaggregant use, perioperative findings, and pre- and post-surgery modified Rankin Scale (mRS) scores were recorded and analyzed., Results: The mean age of our cohort was 65.63 (±20.52), and the male/ female ratio was 3.2: 1. The hematoma was unilateral in 90.5% of the patients, and the rate of trauma history was 42.9%. The most common radiological diagnosis was chronic subdural hematoma with septa (61.9%). The percentage of patients with a history of antiplatelet/ antiaggregant therapy was 23.8%. No mortality related to the surgery was observed in the early postoperative period; however, two patients underwent reoperation for further bleeding. The neurological grade was the only preoperative factor that had a statistically significant effect on the mRS score at discharge, with significantly better discharge mRS scores in grade 1 and 2 patients (p=0.014)., Conclusion: The procedure was found to be safe and feasible, with surgery-related morbidity and mortality within acceptable limits.
- Published
- 2024
- Full Text
- View/download PDF
9. A Novel Perspective to Gamma-Knife Radiosurgery for Solitary Meningiomas: Adaptability of Fast Imaging Employing Steady-State Acquisition/Constructive Interference in Steady-State Magnetic Resonance Imaging.
- Author
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Dere UA, Egemen E, Yakar F, Asar R, Albuz B, Civlan S, Bakirarar B, Sagtas E, Acar F, and Coskun ME
- Subjects
- Humans, Male, Female, Middle Aged, Aged, Adult, Retrospective Studies, Tumor Burden, Meningioma diagnostic imaging, Meningioma surgery, Meningioma radiotherapy, Radiosurgery methods, Magnetic Resonance Imaging methods, Meningeal Neoplasms diagnostic imaging, Meningeal Neoplasms surgery, Meningeal Neoplasms radiotherapy
- Abstract
Aim: To compare T1-weighted contrast-enhanced (T1+C) with fast imaging employing steady-state acquisition (FIESTA) magnetic resonance imaging (MRI) sequences to protect healthy brain tissue during meningioma treatment with Gamma-Knife radiosurgery (GKRS)., Material and Methods: After reviewing the data of 54 patients with solitary meningioma who underwent GKRS between January 2020 and June 2022, demographic characteristics were noted, tumor volumes on T1+C and FIESTA MRI sequences were measured, and sequences were compared. The patients were then divided into two groups according to the presence of invasion to intracranial venous sinuses (groups 1 and 2, respectively). SPSS 11.5 software was used for data analysis, with the level of significance set at 0.05., Results: While no significant age and tumor size differences were observed between groups 1 and 2, sinus invasion was significantly higher among males. Tumor volumes measured in both groups were significantly smaller on FIESTA sequences than on T1+C sequences., Conclusion: The T1+C sequence has been the primary imaging method because of meningiomas' high contrast enhancement feature. However, the T1+C sequence during GKRS planning is an effective imaging method in treating meningiomas; FIESTA sequences can more precisely delineate the tumor border. In this study, we consider that using the FIESTA/CISS sequence MRI for planning meningioma therapy with Gamma-Knife can reduce target volume and prevent irradiation of healthy brain tissue.
- Published
- 2024
- Full Text
- View/download PDF
10. Endoscopy-Assisted Craniosynostosis Surgery Versus Cranial Vault Remodeling for Non-Syndromic Craniosynostosis: Experience of a Single Center.
- Author
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Albuz B, Coskun ME, and Egemen E
- Subjects
- Child, Humans, Infant, Retrospective Studies, Endoscopy methods, Blood Loss, Surgical, Treatment Outcome, Skull diagnostic imaging, Skull surgery, Craniosynostoses diagnostic imaging, Craniosynostoses surgery
- Abstract
Aim: To evaluate and compare open cranial vault remodeling (OCVR) and endoscopy-assisted craniosynostosis surgery (EACS) in patients with non-syndromic craniosynostosis and to develop an algorithm to determine the most appropriate surgery for each patient., Material and Methods: Eighty-five children with craniosynostosis who underwent surgery between 2010 and 2022 were retrospectively analyzed. Demographic data, comorbidities, and peri-operative findings of the patients were recorded. Pre- and post-operative comparisons were made between predetermined measurement techniques for each deformation. In addition, measurements were obtained by computed tomography (CT) or 3D stereophotogrammetric (3DSPG) methods from eligible patients and compared with one another., Results: In our study, 61 patients underwent EACS, whereas 24 underwent OCVR. The operating time of OCVR was approximately 54.4 minutes longer than that of EACS (p < 0.001). The intra-operative blood loss was around 139 ml higher in OCVR (p < 0.001). The length of hospital stay for patients who underwent EACS was shorter at 8.4 days on average (p < 0.001). Surprisingly, 5 complications were observed in OCVR compared with 7 in EACS. While the cosmetic outcome of EACS was superior in most of the pathologyspecific measurement techniques, the metopic index increased only in patients with metopic synostosis after both surgical operations. Still, this increase was lower in EACS than in OCVR., Conclusion: This study suggests that endoscopic craniosynostosis surgery has lower estimated blood loss and operation and hospitalization times, as well as comparable cosmetic results compared with open vault surgeries on long-term follow-up. CT and 3DSPG methods can help distinguish between different types of measurement techniques for synostoses. However, no significant differences were found in the comparisons since 3DSPG can also provide reliable measurements comparable to those on CT during follow-up.
- Published
- 2024
- Full Text
- View/download PDF
11. Applications of enhanced recovery after surgery protocols for unruptured anterior circulation aneurysms in tertiary-level healthcare institutions: a national study.
- Author
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Yakar F, Bakirarar B, Elbir Ç, Egemen E, Hanalioğlu Ş, Dere ÜA, Civlan S, Tönge Ç, Albuz B, Coşkun ME, and Türkoğlu ME
- Subjects
- Humans, Hospitalization, Craniotomy, Postoperative Complications surgery, Delivery of Health Care, Length of Stay, Enhanced Recovery After Surgery, Intracranial Aneurysm surgery
- Abstract
Objective: Enhanced recovery after surgery (ERAS) protocols are standardized perioperative care that reduce patients' stress response during hospitalization and improve hospitalization time, complication rates, costs, and readmission rates. This study aimed to investigate the application rate of protocols for elective craniotomy in the surgery of unruptured anterior circulation aneurysms (AnCAs) at tertiary-level healthcare (TLH) institutions in Türkiye and its effect on the outcomes of the patients., Methods: An electronic survey was sent to all Turkish TLH institutions (n = 127) between May and June 2023. The number of institutions participating in the survey was 38 (30%). The institutions were subdivided according to three main factors: institution type (university hospital [UH] vs training and research hospital [TRH]), annual case volume (low [≤ 20 aneurysms] vs high [> 20 aneurysms]), and institution accreditation status (accredited vs nonaccredited)., Results: Overall, 55.3% (n = 21) of the institutions participating in the study were UHs. The rates of those that were accredited and had a high case volume were 55.3% (n = 21) and 31.6% (n = 12), respectively. It was determined that the accredited clinics applied preoperative protocols at a higher rate (p = 0.050), and the length of stay in the postoperative period was shorter in the clinics that used the intraoperative protocols (p = 0.014)., Conclusions: The length of stay in the postoperative period is lower in TLH institutions in Türkiye that highly implement intraoperative protocols. Furthermore, this is the first study in the literature evaluating protocols for elective craniotomy in unruptured AnCAs.
- Published
- 2023
- Full Text
- View/download PDF
12. Evaluating of colchicine use patterns and attack frequency of familial Mediterranean fever patients in the COVID-19 pandemic.
- Author
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Akcan MB, Albuz B, Ozdemir O, and Silan F
- Subjects
- Humans, Colchicine, Pandemics, Case-Control Studies, Familial Mediterranean Fever, COVID-19
- Published
- 2023
- Full Text
- View/download PDF
13. Analysis of Differences in DNA Damage and Repair Efficacy in Lymphocytes of Patients with Bipolar Disorder.
- Author
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Mart G, Ateşci FF, Mart M, Seçme M, Dodurga Y, and Albuz B
- Subjects
- Adolescent, Adult, Aged, Antioxidants, DNA Damage, Humans, Lymphocytes metabolism, Middle Aged, Oxidants, RNA, Messenger, Young Adult, Bipolar Disorder genetics, DNA Glycosylases genetics
- Abstract
Objective: The aim of this study was to determine DNA damage during euthymic and attack periods, and the oxidative metabolism states that may cause this damage in the pathophysiology of bipolar disorder. The role of DNA repair mechanisms in this process was also investigated., Method: The study included a total of 90 patients aged between 18-65 years who were diagnosed with bipolar disorder according to DSM- 5 diagnostic criteria, with 30 patients in euthymic, 30 in manic and 30 in depressive periods. A control group was formed of 30 healthy subjects matched to the patients by age, gender, body mass index and smoking status and/or alcohol consumption. Oxidative metabolism was investigated using the Comet Assay technique to assess DNA damage, according to the oxidant/antioxidant status in the technique developed by Erel with the Rel ASSAY Diagnostics kit (Turkey). The control and patient groups were compared in respect of gene expression levels of OGG1 and NEIL1 repair genes at mRNA level with Real-Time PCR., Results: Increased DNA damage was found in the euthymic and manic groups and decreased NEIL1 gene expression in the depressive group. The oxidative stress index was found to be decreased in the patient groups compared to the healthy control group., Conclusion: Oxidative imbalance and DNA damage and repair disorders may be effective in the pathophysiology of bipolar disorder. Further studies on this subject are required to clarify the etiology and new treatment goals.
- Published
- 2022
- Full Text
- View/download PDF
14. The high frequency of chromosomal copy number variations and candidate genes in epilepsy patients.
- Author
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Albuz B, Ozdemir O, and Silan F
- Subjects
- Adaptor Proteins, Signal Transducing genetics, Adolescent, Adult, Chemokines, CC genetics, Child, Child, Preschool, Comparative Genomic Hybridization, DNA Repair Enzymes genetics, DNA-Binding Proteins genetics, Female, GTPase-Activating Proteins genetics, Genetic Association Studies, Humans, Hydrolases genetics, Infant, Male, Nerve Tissue Proteins genetics, Retrospective Studies, SOXE Transcription Factors genetics, Tenascin genetics, Ubiquitin-Protein Ligases genetics, Young Adult, DNA Copy Number Variations genetics, Epilepsy genetics
- Abstract
Objective: Epilepsy is a chronic brain disease and is estimated to affect more than 50 million people worldwide.Epilepsy is a polygenic and multifactorial disease.Genetic causes play a major role in 40-60 % of all epilepsies.Copy number variations(CNVs) have been reported in approximately 5-12 % of patients with different types of epilepsy.Here we aimed to determine the diagnostic yield of the aCGH in epilepsy and to reveal new candidate genes and CNVs by analyzing aCGH data retrospectively., Methods: The clinical data of 80 patients with the diagnosis of epilepsy were examined retrospectively and the raw data of aCGH of these patients were reanalyzed in the light of current literature., Results: Pathogenic/likely pathogenic CNVs were detected in 14 of 80 patients and 12 of these CNVs (15 %) were associated with epilepsy phenotype. In addition, 18 CNVs in 16 different chromosomal loci that were evaluated as the variant of unknown clinical significance(VOUS). In four cases (5%), CNVs associated with epilepsy were less than 100 kb and these accounted for 13.3 % of all epilepsy associated CNVs., Conclusion: The diagnostic yield of aCGH in epilepsy patients was found to be higher than most studies in the literature. MACROD2,ADGRB3(BAI3),SOX8,HIP1,PARK2 and TAFA2 genes were evaluated as potential epilepsy-related genes and NEDD9,RASAL2 and TNR genes thought to be the candidate genes for epilepsy. Our study showed that the diagnostic efficiency of aCGH in epilepsy is high and with more comprehensive studies, it will contribute to the elucidation of genes involved in genetic etiology in epilepsy patients., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
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15. A novel nonsense mutation in CHST3 in a Turkish patient with spondyloepiphyseal dysplasia, Omani type.
- Author
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Albuz B, Çetin GO, Özhan B, Sarikepe B, Anlaş Ö, Öztürk M, Zeybek S, Sabir N, Bağci G, and Semerci Gündüz CN
- Subjects
- Child, Female, Humans, Turkey, Carbohydrate Sulfotransferases, Codon, Nonsense, Osteochondrodysplasias genetics, Osteochondrodysplasias pathology, Sulfotransferases genetics
- Published
- 2020
- Full Text
- View/download PDF
16. Blau syndrome with a rare mutation in exon 9 of NOD2 gene.
- Author
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Velickovic J, Silan F, Bir FD, Silan C, Albuz B, and Ozdemir O
- Subjects
- Adult, Alleles, Arthritis diagnosis, Arthritis physiopathology, Child, Dermatitis diagnosis, Dermatitis physiopathology, Exons, Female, Gene Expression, Granulomatous Disease, Chronic diagnosis, Granulomatous Disease, Chronic physiopathology, Headache diagnosis, Headache physiopathology, High-Throughput Nucleotide Sequencing, Humans, Male, Middle Aged, Sarcoidosis, Stroke diagnosis, Stroke physiopathology, Synovitis diagnosis, Synovitis physiopathology, Uveitis diagnosis, Uveitis physiopathology, Arthritis genetics, Dermatitis genetics, Granulomatous Disease, Chronic genetics, Headache genetics, Mutation, Missense, Nod2 Signaling Adaptor Protein genetics, Stroke genetics, Synovitis genetics, Uveitis genetics
- Abstract
Blau syndrome is an autosomal dominant rare disease caused by mutations in NOD2 gene. Less than 200 patients published with Blau Syndrome Worldwide. We reported a 41-year old female Turkish patient diagnosed as Blau syndrome. Granulomatous dermatitis and severe headache, as well as recurrent chest and pelvic pain have been present since she was 8 years old. Arthritis started when she was teenage, hypertension diagnosed when she was 20 and other symptoms also occurred during the lifetime (severe preeclampsia, ischemic stroke, recurrent hemiparesis, recurrent-transient-vision-loss and renal-artery-stenosis). Genomic DNA was isolated from peripheral blood and 12 genes sequenced in Autoinflammatory panel on IonTorrent-S5-NGS platform with Parseq-VariFind™AIPassay. NGS analysis showed 107 variants in in the index case, mainly benign with no strong association with Blau syndrome. Additionally, we identified one very rare missense mutation in NOD2 gene (c2803G>A, p.Val935Met) and in silico assessment of the mutation indicated possible pathogenic significance and strong association with Blau syndrome. In addition, we analyzed family members of the index case and identified the same mutation in NOD2 gene. The segregation analysis shows the presence of the same mutant allele in NOD2 gene in the index case affected sister, as well as in her son with arthralgia, while in her non affecter brother we didn't detect the Val935Met mutation in NOD2 gene. Blau Syndrome is known as a very rare disease, mainly caused by mutations in NOD2 gene. Missense mutation diagnosed in our case could be responsible for the phenotype of the index case. Our results indicate the importance of NGS testing and its major role in the detection of rare mutations that may responsible for the onset of autoinflammatory disorders.
- Published
- 2019
- Full Text
- View/download PDF
17. De novo mutations of the ATP6V1A gene cause developmental encephalopathy with epilepsy.
- Author
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Fassio A, Esposito A, Kato M, Saitsu H, Mei D, Marini C, Conti V, Nakashima M, Okamoto N, Olmez Turker A, Albuz B, Semerci Gündüz CN, Yanagihara K, Belmonte E, Maragliano L, Ramsey K, Balak C, Siniard A, Narayanan V, Ohba C, Shiina M, Ogata K, Matsumoto N, Benfenati F, and Guerrini R
- Subjects
- Adolescent, Animals, Brain diagnostic imaging, Brain Diseases complications, Brain Diseases pathology, Cells, Cultured, Child, Cohort Studies, Epilepsy complications, Epilepsy pathology, Female, Gene Expression Regulation genetics, HEK293 Cells, Humans, Lysosomal-Associated Membrane Protein 1 metabolism, Lysosomes metabolism, Lysosomes pathology, Male, Models, Molecular, Neurons metabolism, Neurons pathology, Neurons ultrastructure, Rats, Synapses metabolism, Synapses pathology, Vacuolar Proton-Translocating ATPases metabolism, Vesicular Transport Proteins metabolism, Exome Sequencing, Brain Diseases genetics, Epilepsy genetics, Mutation genetics, Vacuolar Proton-Translocating ATPases genetics
- Abstract
V-type proton (H+) ATPase (v-ATPase) is a multi-subunit proton pump that regulates pH homeostasis in all eukaryotic cells; in neurons, v-ATPase plays additional and unique roles in synapse function. Through whole exome sequencing, we identified de novo heterozygous mutations (p.Pro27Arg, p.Asp100Tyr, p.Asp349Asn, p.Asp371Gly) in ATP6V1A, encoding the A subunit of v-ATPase, in four patients with developmental encephalopathy with epilepsy. Early manifestations, observed in all patients, were developmental delay and febrile seizures, evolving to encephalopathy with profound delay, hypotonic/dyskinetic quadriparesis and intractable multiple seizure types in two patients (p.Pro27Arg, p.Asp100Tyr), and to moderate delay with milder epilepsy in the other two (p.Asp349Asn, p.Asp371Gly). Modelling performed on the available prokaryotic and eukaryotic structures of v-ATPase predicted p.Pro27Arg to perturb subunit interaction, p.Asp100Tyr to cause steric hindrance and destabilize protein folding, p.Asp349Asn to affect the catalytic function and p.Asp371Gly to impair the rotation process, necessary for proton transport. We addressed the impact of p.Asp349Asn and p.Asp100Tyr mutations on ATP6V1A expression and function by analysing ATP6V1A-overexpressing HEK293T cells and patients' lymphoblasts. The p.Asp100Tyr mutant was characterized by reduced expression due to increased degradation. Conversely, no decrease in expression and clearance was observed for p.Asp349Asn. In HEK293T cells overexpressing either pathogenic or control variants, p.Asp349Asn significantly increased LysoTracker® fluorescence with no effects on EEA1 and LAMP1 expression. Conversely, p.Asp100Tyr decreased both LysoTracker® fluorescence and LAMP1 levels, leaving EEA1 expression unaffected. Both mutations decreased v-ATPase recruitment to autophagosomes, with no major impact on autophagy. Experiments performed on patients' lymphoblasts using the LysoSensor™ probe revealed lower pH of endocytic organelles for p.Asp349Asn and a reduced expression of LAMP1 with no effect on the pH for p.Asp100Tyr. These data demonstrate gain of function for p.Asp349Asn characterized by an increased proton pumping in intracellular organelles, and loss of function for p.Asp100Tyr with decreased expression of ATP6V1A and reduced levels of lysosomal markers. We expressed p.Asp349Asn and p.Asp100Tyr in rat hippocampal neurons and confirmed significant and opposite effects in lysosomal labelling. However, both mutations caused a similar defect in neurite elongation accompanied by loss of excitatory inputs, revealing that altered lysosomal homeostasis markedly affects neurite development and synaptic connectivity. This study provides evidence that de novo heterozygous ATP6V1A mutations cause a developmental encephalopathy with a pathomechanism that involves perturbations of lysosomal homeostasis and neuronal connectivity, uncovering a novel role for v-ATPase in neuronal development.
- Published
- 2018
- Full Text
- View/download PDF
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