69 results on '"Alba Gutierrez"'
Search Results
2. International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium
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Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L’ Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutierrez-Sacristan, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie Kirchoff, Jean Craig, Jihad Obeid, Vianney Jouhet, Romain Griffier, Sebastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans U. Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schiver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne Sophie Jannot, Stephane Breant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Melodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Esteve, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gael Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew South, Tianxi Cai, and Isaac S. Kohane
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract We leveraged the largely untapped resource of electronic health record data to address critical clinical and epidemiological questions about Coronavirus Disease 2019 (COVID-19). To do this, we formed an international consortium (4CE) of 96 hospitals across five countries ( www.covidclinical.net ). Contributors utilized the Informatics for Integrating Biology and the Bedside (i2b2) or Observational Medical Outcomes Partnership (OMOP) platforms to map to a common data model. The group focused on temporal changes in key laboratory test values. Harmonized data were analyzed locally and converted to a shared aggregate form for rapid analysis and visualization of regional differences and global commonalities. Data covered 27,584 COVID-19 cases with 187,802 laboratory tests. Case counts and laboratory trajectories were concordant with existing literature. Laboratory tests at the time of diagnosis showed hospital-level differences equivalent to country-level variation across the consortium partners. Despite the limitations of decentralized data generation, we established a framework to capture the trajectory of COVID-19 disease in patients and their response to interventions.
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- 2020
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3. Olive Leaf as a Source of Antibacterial Compounds Active against Antibiotic-Resistant Strains of Campylobacter jejuni and Campylobacter coli
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Jose Manuel Silvan, Esperanza Guerrero-Hurtado, Alba Gutierrez-Docio, Marin Prodanov, and Adolfo J. Martinez-Rodriguez
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Campylobacter jejuni ,Campylobacter coli ,antibiotic resistance ,olive leaf extracts ,antibacterial activity ,hydroxytyrosol ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Campylobacter spp. are the main cause of bacterial gastroenteritis worldwide, and broiler chicks are the main vector of transmission to humans. The high prevalence of Campylobacter in poultry meat and the increase of antibiotic resistant strains have raised the need to identify new antimicrobial agents. For this reason, the aim of the current study was to evaluate the antibacterial activity of two extracts of olive leaf against antibiotic-resistant Campylobacter strains (C. jejuni and C. coli) isolated from poultry food chain. The extracts of olive leaf (E1 and E2) were markedly different in their chemical compositions. While E1 was composed predominantly of highly hydrophilic compounds such as hydroxytyrosol and hydroxytyrosol glucosides (14,708 mg/100 g), E2 mainly contained moderately hydrophilic compounds, with oleuropein (20,471 mg/100 g) being prevalent. All Campylobacter strains exhibited similar antibiotic profiles, being resistant to ciprofloxacin and tetracycline. E1 showed strong antibacterial activity and reduced bacterial growth from 4.12 to 8.14 log CFU/mL, depending on the strain. Hydroxytyrosol was the main compound responsible, causing the inhibition of growth of Campylobacter strains at low concentrations (0.1–0.25 mg/mL). E2 demonstrated a lower antibacterial effect than E1, reducing growth from 0.52 to 2.49 log CFU/mL. The results of this study suggest that the optimization of the composition of olive-leaf extracts can provide improved treatment results against Campylobacter strains.
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- 2022
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4. Influence of In Vitro Gastric Digestion of Olive Leaf Extracts on Their Bioactive Properties against H. pylori
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Marisol Villalva, Jose Manuel Silvan, Esperanza Guerrero-Hurtado, Alba Gutierrez-Docio, Joaquín Navarro del Hierro, Teresa Alarcón-Cavero, Marin Prodanov, Diana Martin, and Adolfo J. Martinez-Rodriguez
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gastric digestion ,olive leaf extract ,Helicobacter pylori ,anti-inflammatory activity ,antioxidant activity ,antibacterial activity ,Chemical technology ,TP1-1185 - Abstract
The aim of this work was to evaluate the influence of in vitro gastric digestion of two olive leaf extracts (E1 and E2) on their chemical composition and bioactive properties against Helicobacter pylori (H. pylori), one of the most successful and prevalent human pathogens. HPLC-PAD/MS analysis and anti-inflammatory, antioxidant, and antibacterial activities of both olive leaf extracts were carried out before and after their in vitro gastric digestion. The results showed that gastric digestion produced modifications of the chemical composition and bioactive properties of both olive leaf extracts. The main compounds in the extract E1 were hydroxytyrosol and its glucoside derivatives (14,556 mg/100 g), presenting all the identified compounds a more polar character than those found in the E2 extract. E2 showed a higher concentration of less polar compounds than E1 extract, with oleuropein (21,419 mg/100 g) being the major component. Gastric digestion during the fasted state (pH 2) induced an overall decrease of the most identified compounds. In the extract E1, while the anti-inflammatory capacity showed only a slight decrease (9% of IL-8 production), the antioxidant properties suffered a drastic drop (23% of ROS inhibition), as well as the antibacterial capacity. However, in the extract E2, these changes caused an increase in the anti-inflammatory (19% of IL-8 production) and antioxidant activity (9% of ROS inhibition), which could be due to the hydrolysis of oleuropein and ligustroside into their main degradation products, hydroxytyrosol and tyrosol, but the antibacterial activity was reduced. Gastric digestion during fed state (pH 5) had less influence on the composition of the extracts, affecting in a lesser degree their anti-inflammatory and antioxidant activity, although there was a decrease in the antibacterial activity in both extracts similar to that observed at pH 2.
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- 2022
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5. Olive Leaf Extracts as a Source of Antibacterial Compounds against Campylobacter spp. Strains Isolated from the Chicken Food Chain
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Jose Manuel Silvan, Rodrigo Casado, Marisol Villalva, Soledad Diaz, Alba Gutierrez-Docio, Esperanza Guerrero-Hurtado, Marin Prodanov, and Adolfo J. Martinez-Rodriguez
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Campylobacter ,olive leaves ,antibacterial activity ,olive by-products ,Plant ecology ,QK900-989 ,Animal biochemistry ,QP501-801 ,Biology (General) ,QH301-705.5 - Abstract
Campylobacter is the leading cause of bacterial foodborne gastroenteritis worldwide. Infections by Campylobacter in humans are generally caused by consuming contaminated foods of animal origin, with poultry, especially chicken, being the main reservoir. The high prevalence of Campylobacter in chicken carcasses and the growing resistance to the most widely used antibiotics has driven EFSA to propose a regulation (2017/1495) containing new microbiological criteria to regulate the presence of Campylobacter in broiler carcasses. In this context, there has been an increase in the number of research aimed at the search for new tools to reduce Campylobacter incidence in chicken meat. The objective of the present work was to evaluate the antibacterial activity of two olive leaf extracts (A y B) against eleven Campylobacter spp. strains (C. jejuni y C. coli) isolated from chicken food chain. Results showed that all Campylobacter strains had resistance to at least one of the eight antibiotics evaluated, and 46% of them were antibiotic multi-resistant. HPLC analysis showed that hydroxytyrosol and oleuropein were the major phenolic compounds in extracts A and B, respectively. Extract A showed a significant antibacterial activity against all Campylobacter strains tested in the present work. The use of a pure standard of hydroxytyrosol confirmed the contribution of this compound to the antibacterial effect of extract A. These results suggest that olive leaves could be used as a source of bioactive compounds to obtain extracts with antibacterial activity against Campylobacter spp potentially applicable to reduce the presence of Campylobacter in chicken carcasses.
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- 2021
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6. Pre-Treatment with Grape Seed Extract Reduces Inflammatory Response and Oxidative Stress Induced by Helicobacter pylori Infection in Human Gastric Epithelial Cells
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Jose Manuel Silvan, Alba Gutierrez-Docio, Esperanza Guerrero-Hurtado, Lucia Domingo-Serrano, Ana Blanco-Suarez, Marin Prodanov, Teresa Alarcon-Cavero, and Adolfo J. Martinez-Rodriguez
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grape seed extract ,Helicobacter pylori ,inflammation ,oxidative stress ,virulence ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Helicobacter pylori (H. pylori) is a pathogenic bacteria identified as a potential risk factor for gastritis, gastric ulcers and gastric cancer. During the stomach colonization, H. pylori triggers a strong inflammatory response and subsequent oxidative stress, which are associated with tissue damage. For this reason, it is of particular interest to develop alternative natural tools that enable modulation of the associated damaging immune response. With this purpose, we obtained grape seed extract (GSE) from sweet (not fermented) food grade seeds. The aim of our study was to investigate the effect of GSE and its two enriched procyanidins fractions (OPC and PPC) on the inflammatory process and oxidative stress produced by different H. pylori strains in human gastric epithelial cells (AGS). Anti-inflammatory activity was evaluated by measuring the level of interleukin-8 (IL-8) secretion. IL-8 production was significantly reduced in H. pylori-infected human gastric epithelial cells pre-treated with GSE or its enriched fractions when compared with non-pre-treated infected cells (from 21.6% to 87.8%). Pre-treatment with GSE or its fractions significantly decreased intracellular reactive oxygen species (ROS) production in AGS cells after infection, depending on the H. pylori strain. Our results also showed that GSE and its fractions demonstrate antibacterial activity against all strains of H. pylori used in the study. This work demonstrates the effectiveness of GSE enriched in procyanidins against the main events associated with H. pylori infection.
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- 2021
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7. Exploring the Extracellular Macromolecular Composition of Crude Extracts of Penicillium rubens Strain 212 for Elucidation Its Mode of Action as a Biocontrol Agent
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Maria Carreras, Eduardo A. Espeso, Alba Gutierrez-Docio, Silvia Moreno-Fernandez, Marin Prodanov, Maria Dolores Hernando, Paloma Melgarejo, and Inmaculada Larena
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biocontrol ,biological control agents ,extracellular proteins ,metabolites ,proteome ,Biology (General) ,QH301-705.5 - Abstract
Penicillium rubens strain 212 (PO212) acts as an inducer of systemic resistance in tomato plants. The effect of crude extracellular extracts of PO212 on the soil-borne pathogen Fusarium oxysporum f. sp. lycopersici has been evaluated. Evidence of the involvement of soluble, thermo-labile, and proteinase-inactivated macromolecules present in PO212 crude extracts in the control of Fusarium vascular disease in tomato plants was found. Proteomic techniques and the availability of the access to the PO212 genome database have allowed the identification of glycosyl hydrolases, oxidases, and peptidases in these extracellular extracts. Furthermore, a bioassay-guided fractionation of PO212 crude extracellular extracts using an integrated membrane/solid phase extraction process was set up. This method enabled the separation of a PO212 crude extracellular extract of seven days of growth into four fractions of different molecular sizes and polarities: high molecular mass protein fraction >5 kDa, middle molecular mass protein fraction 5–1 kDa, low molecular mass metabolite fraction, and nutrients from culture medium (mainly glucose and minerals). The high and middle molecular mass protein fractions retained disease control activity in a way similar to that of the control extracts. Proteomic techniques have allowed the identification of nine putatively secreted proteins in the high molecular mass protein fraction matching those identified in the total crude extracts. Therefore, these enzymes are considered to be potentially responsible of the crude extracellular extract-induced resistance in tomato plants against F. oxysporum f. sp. lycopersici. Further studies are required to establish which of the identified proteins participate in the PO212’s action mode as a biocontrol agent.
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- 2020
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8. Evaluation of an Integrated Ultrafiltration/Solid Phase Extraction Process for Purification of Oligomeric Grape Seed Procyanidins
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Alba Gutierrez-Docio, Paula Almodóvar, Silvia Moreno-Fernandez, Jose Manuel Silvan, Adolfo J. Martinez-Rodriguez, Gonzalo Luis Alonso, and Marin Prodanov
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grape seed extract ,purification ,tangential-flow pressure-driven membrane ultrafiltration ,solid-phase extraction ,oligomeric procyanidins ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
The effectiveness of a preparative integrated ultrafiltration/solid-phase extraction (UF/SPE) process for purification of oligomeric procyanidins (OPCs) from a crude grape seed extract (GSE) was studied for the first time. The separation of OPCs from polymeric procyanidins (PPCs) by UF was very efficient. The membrane showed an acceptable filtration flux of 6 to 3.5 L/h·m2 at 0.5 bar of transmembrane pressure and 95% recovery of its water flux after chemical cleaning. The process was scalable to a pilot scale. The separation of very polar and ionic species from OPCs by SPE (XAD7HP and XAD16 resins) was also very good, but both adsorbents lost their retention capacities quickly, due probably to irreversible retention of OPCs/PPCs. Even though the global purification of OPCs by the integrated UF/SPE process allowed the recovery of 24.2 g of highly purified OPCs (83% purity) from 14.4 L of crude grape seed extract, the use of these adsorbents for further purification of the OPCs was very limited.
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- 2020
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9. Natural language processing of social network data for the evaluation of agricultural and rural policies
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Domínguez, Alba Gutiérrez, Roig-Tierno, Norat, Chaparro-Banegas, Nuria, and García-Álvarez-Coque, José-María
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- 2024
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10. Design of a Modular Exoskeleton Based on Distributed Central Pattern Generators
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Alberto Plaza, Mar Hernandez, Alba Gutierrez, Jaime Ramos, Gonzalo Puyuelo, Carlos Cumplido, Elena Garces, Marie Andre Destarac, Elena Delgado, and Elena Garcia
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Control and Systems Engineering ,Computer Networks and Communications ,Electrical and Electronic Engineering ,Computer Science Applications ,Information Systems - Published
- 2023
11. The rich sides of mountain summits – a pan-European view on aspect preferences of alpine plants
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Winkler, Manuela, Lamprecht, Andrea, Steinbauer, Klaus, Hülber, Karl, Theurillat, Jean-Paul, Breiner, Frank, Choler, Philippe, Ertl, Siegrun, Girón, Alba Gutiérrez, Rossi, Graziano, Vittoz, Pascal, Akhalkatsi, Maia, Bay, Christian, Alonso, José-Luis Benito, Bergström, Tomas, Carranza, Maria Laura, Corcket, Emmanuel, Dick, Jan, Erschbamer, Brigitta, Calzado, Rosa Fernández, Fosaa, Anna Maria, Gavilán, Rosario G., Ghosn, Dany, Gigauri, Khatuna, Huber, Doris, Kanka, Robert, Kazakis, George, Klipp, Martin, Kollar, Jozef, Kudernatsch, Thomas, Larsson, Per, Mallaun, Martin, Michelsen, Ottar, Moiseev, Pavel, Moiseev, Dmitry, Molau, Ulf, Mesa, Joaquín Molero, di Celia, Umberto Morra, Nagy, Laszlo, Petey, Martina, Puşcaş, Mihai, Rixen, Christian, Stanisci, Angela, Suen, Michael, Syverhuset, Anne O., Tomaselli, Marcello, Unterluggauer, Peter, Ursu, Tudor, Villar, Luis, Gottfried, Michael, and Pauli, Harald
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- 2016
12. Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
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Stan Ahalt, Paul Avillach, Rebecca Boyles, Kira Bradford, Steven Cox, Brandi Davis-Dusenbery, Robert L Grossman, Ashok Krishnamurthy, Alisa Manning, Benedict Paten, Anthony Philippakis, Ingrid Borecki, Shu Hui Chen, Jon Kaltman, Sweta Ladwa, Chip Schwartz, Alastair Thomson, Sarah Davis, Alison Leaf, Jessica Lyons, Elizabeth Sheets, Joshua C Bis, Matthew Conomos, Alessandro Culotti, Thomas Desain, Jack Digiovanna, Milan Domazet, Stephanie Gogarten, Alba Gutierrez-Sacristan, Tim Harris, Ben Heavner, Deepti Jain, Brian O'Connor, Kevin Osborn, Danielle Pillion, Jacob Pleiness, Ken Rice, Garrett Rupp, Arnaud Serret-Larmande, Albert Smith, Jason P Stedman, Adrienne Stilp, Teresa Barsanti, John Cheadle, Christopher Erdmann, Brandy Farlow, Allie Gartland-Gray, Julie Hayes, Hannah Hiles, Paul Kerr, Chris Lenhardt, Tom Madden, Joanna O Mieczkowska, Amanda Miller, Patrick Patton, Marcie Rathbun, Stephanie Suber, and Joe Asare
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Health Informatics - Abstract
Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData CatalystⓇ (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers, find, access, share, store, and compute on large-scale datasets. This ecosystem provides secure, cloud-based workspaces, user authentication and authorization, search, tools and workflows, applications, and new innovative features to address community needs, including exploratory data analysis, genomic and imaging tools, tools for reproducibility, and improved interoperability with other NIH data science platforms. BDC offers straightforward access to large-scale datasets and computational resources that support precision medicine for heart, lung, blood, and sleep conditions, leveraging separately developed and managed platforms to maximize flexibility based on researcher needs, expertise, and backgrounds. Through the NHLBI BioData Catalyst Fellows Program, BDC facilitates scientific discoveries and technological advances. BDC also facilitated accelerated research on the coronavirus disease-2019 (COVID-19) pandemic.
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- 2023
13. Inmovilizacion de Quercetina sobre resina de Merrifield mediante Sintesis Organica en Fase Solida asistida por microondas. Estudio preliminar de la retencion de Pb(II)
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Market Denet Luaces-Alberto, C., Arístides Camilo Valdés-González, C., Ariel Alonso-Vilches, Carlos, Lázaro Alba-Gutierrez, Liván, Fernandez-Puig, Soane, and Gutiérrez-Carreras, C. Ana María
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- 2017
14. Building an i2b2-Based Population Repository for COVID-19 Research
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Miguel Pedrera-Jimenez, Noelia Garcia-Barrio, Gema Hernandez-Ibarburu, Blanca Baselga, Alvar Blanco, Fernando Calvo-Boyero, Alba Gutierrez-Sacristan, Víctor Quiros, Juan Luis Cruz-Bermudez, José Luis Bernal, Laura Meloni, David Perez-Rey, Matvey Palchuk, Isaac Kohane, and Pablo Serrano
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Reuse of Electronic Health Records (EHRs) for specific diseases such as COVID-19 requires data to be recorded and persisted according to international standards. Since the beginning of the COVID-19 pandemic, Hospital Universitario 12 de Octubre (H12O) evolved its EHRs: it identified, modeled and standardized the concepts related to this new disease in an agile, flexible and staged way. Thus, data from more than 200,000 COVID-19 cases were extracted, transformed, and loaded into an i2b2 repository. This effort allowed H12O to share data with worldwide networks such as the TriNetX platform and the 4CE Consortium.
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- 2022
15. Building an i2b2-Based Population Repository for COVID-19 Research
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Miguel, Pedrera-Jimenez, Noelia, Garcia-Barrio, Gema, Hernandez-Ibarburu, Blanca, Baselga, Alvar, Blanco, Fernando, Calvo-Boyero, Alba, Gutierrez-Sacristan, Víctor, Quiros, Juan Luis, Cruz-Bermudez, José Luis, Bernal, Laura, Meloni, David, Perez-Rey, Matvey, Palchuk, Isaac, Kohane, and Pablo, Serrano
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COVID-19 ,Electronic Health Records ,Humans ,Pandemics - Abstract
Reuse of Electronic Health Records (EHRs) for specific diseases such as COVID-19 requires data to be recorded and persisted according to international standards. Since the beginning of the COVID-19 pandemic, Hospital Universitario 12 de Octubre (H12O) evolved its EHRs: it identified, modeled and standardized the concepts related to this new disease in an agile, flexible and staged way. Thus, data from more than 200,000 COVID-19 cases were extracted, transformed, and loaded into an i2b2 repository. This effort allowed H12O to share data with worldwide networks such as the TriNetX platform and the 4CE Consortium.
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- 2022
16. Development and validation of an open-source pipeline for automatic population of case report forms from electronic health records: a pediatric multi-center prospective studyResearch in context
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Alba Gutiérrez-Sacristán, Simran Makwana, Audrey Dionne, Simran Mahanta, Karla J. Dyer, Faridis Serrano, Carmen Watrin, Pierre Pages, Sajad Mousavi, Anil Degala, Jessica Lyons, Danielle Pillion, Joany M. Zachariasse, Lara S. Shekerdemian, Dongngan T. Truong, Jane W. Newburger, and Paul Avillach
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Data collection ,Electronic health records ,Multicenter study ,Prospective studies ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Clinical trials and registry studies are essential for advancing research and developing novel treatments. However, these studies rely on manual entry of thousands of variables for each patient. Repurposing real-world data can significantly simplify the data collection, reduce transcription errors, and make the data entry process more efficient, consistent, and cost-effective. Methods: We developed an open-source computational pipeline to collect laboratory and medication information from the electronic health record (EHR) data and populate case report forms. The pipeline was developed and validated with data from two independent pediatric hospitals in the US as part of the Long-terM OUtcomes after Multisystem Inflammatory Syndrome In Children (MUSIC) study. Our pipeline allowed the completion of two of the most time-consuming forms. We compared automatically extracted results with manually entered values in one hospital and applied the pipeline to a second hospital, where the output served as the primary data source for case report forms. Findings: We extracted and populated 51,845 laboratory and 4913 medication values for 159 patients in two hospitals participating in a prospective pediatric study. We evaluated pipeline performance against data for 104 patients manually entered by clinicians in one of the hospitals. The highest concordance was found during patient hospitalization, with 91.59% of the automatically extracted laboratory and medication values corresponding with the manually entered values. In addition to the successfully populated values, we identified an additional 13,396 laboratory and 567 medication values of interest for the study. Interpretation: The automatic data entry of laboratory and medication values during admission is feasible and has a high concordance with the manually entered data. By implementing this proof of concept, we demonstrate the quality of automatic data extraction and highlight the potential of secondary use of EHR data to advance medical science by improving data entry efficiency and expediting clinical research. Funding: NIH Grant 1OT3HL147154-01, U24HL135691, UG1HL135685.
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- 2024
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17. The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system
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Batsal Devkota, Michal Kouril, Joseph W. St. Geme, Alba Gutierrez, Simone Temporal, Keith Marsolo, Peter White, Joseph A. Majzoub, Alan Yen, Jaspreet Khanna, Julie Wijesooriya, Mike Furgason, Florence T. Bourgeois, Christopher Geehan, Adda Grimberg, Arnold W. Strauss, Becca Harper, Kristen Safier, Aleksandr Nikitin, Andrew Wooten, Vidhu V Thaker, Deanne Taylor, Ingo Helbig, Darlene Barkman, Anil Kumar Degala, Gelvina Stevenson, Eric D. Marsh, Colin P. Hawkes, Andrew Dauber, Jason Stedman, In-Hee Lee, Andrew M. Rupert, Gary R. Fleisher, Ramkrishna Chakrabarty, Piotr Sliz, Alyssa Ellis, Barbara Hallinan, Kenneth D. Mandl, Susan Kornetsky, Bryan A. Wolf, Philip Dexheimer, Alan H. Beggs, Yu Zhang, Erin M. Borglund, Joel N. Hirschhorn, Andrew Joseph Guidetti, Amy Schwarzhoff, Anna Poduri, Gabor Korodi, Louis J. Muglia, Prakash Velayutham, Christopher P. Kirby, Mike Pistone, Allison Heath, Parth Divekar, Judson Kilbourn, Ranjay Kumar, Guillaume Labilloy, Alka Chandel, Ian D. Krantz, Thomas N DeSain, Kristen L. Sund, Lisa J. Martin, James Morgan, Jeremy Nix, Sawona Biswas, Tracy A. Glauser, Paul Avillach, Sek Won Kong, Niloofar Jalali, Jeremy J. Corsmo, Anna Bartels, Amy Kratchman, and Bria Morgan
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0301 basic medicine ,education.field_of_study ,Computer science ,business.industry ,Interoperability ,Population ,Information technology ,Genomics ,030105 genetics & heredity ,Institutional review board ,Biobank ,Data science ,Article ,03 medical and health sciences ,genomic medicine ,electronic health records ,biobanking ,030104 developmental biology ,Open source ,information technology ,education ,business ,Genetics (clinical) ,Material transfer ,federated networks - Abstract
Purpose Clinicians and researchers must contextualize a patient’s genetic variants against population-based references with detailed phenotyping. We sought to establish globally scalable technology, policy, and procedures for sharing biosamples and associated genomic and phenotypic data on broadly consented cohorts, across sites of care. Methods Three of the nation’s leading children’s hospitals launched the Genomic Research and Innovation Network (GRIN), with federated information technology infrastructure, harmonized biobanking protocols, and material transfer agreements. Pilot studies in epilepsy and short stature were completed to design and test the collaboration model. Results Harmonized, broadly consented institutional review board (IRB) protocols were approved and used for biobank enrollment, creating ever-expanding, compatible biobanks. An open source federated query infrastructure was established over genotype–phenotype databases at the three hospitals. Investigators securely access the GRIN platform for prep to research queries, receiving aggregate counts of patients with particular phenotypes or genotypes in each biobank. With proper approvals, de-identified data is exported to a shared analytic workspace. Investigators at all sites enthusiastically collaborated on the pilot studies, resulting in multiple publications. Investigators have also begun to successfully utilize the infrastructure for grant applications. Conclusions The GRIN collaboration establishes the technology, policy, and procedures for a scalable genomic research network.
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- 2020
18. Contenidos esenciales en la asignatura de Química III en la Escuela Nacional Preparatoria. Un análisis mediante el empleo de redes semánticas naturales
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Rodríguez, Alba Gutiérrez and Crispín Martínez, María del Carmen
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- 2010
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19. Influence of diabetes mellitus on mortality in patients hospitalized with COVID-19
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Vidal Tomas Gonzalez, Elías Delgado, Iglesias Soraya Lanes, García Urruzola Fernando, Luis Menendez Torre Edelmiro, Escobedo Raul Rodriguez, Tames Gema Martinez, Felgueroso Carlos Alonso, and Hurtado Alba Gutierrez
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medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Internal medicine ,Diabetes mellitus ,medicine ,In patient ,medicine.disease ,business - Published
- 2021
20. Monitoring mediterranean high mountain vegetation in the Sistema Central (Spain): GLORIA project and collateral ecological studies/Seguimiento de la vegetación de la alta montaña mediterránea en el Sistema Central (España): el proyecto GLORIA y estudios ecológicos relacionados
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Giron, Alba Gutierrez and Gavilan, Rosario G.
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- 2013
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21. Natural history and surgical outcomes of Rathke’s cleft cysts: a Spanish multicenter study
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Edelmiro Luis Menéndez-Torre, Alba Gutiérrez-Hurtado, María Dolores Ollero, Ana Irigaray, Patricia Martín, Paola Parra, Inmaculada González-Molero, Marta Araujo-Castro, Cindy Idrobo, María Dolores Moure, Ana Rosa Molina, Betina Biagetti, Pedro Iglesias, Miguel Paja, Rocío Villar-Taibo, Alberto Pena, Almudena Vicente, Fernando Guerrero-Pérez, Fernando Cordido, Anna Aulinas, Manel Mateu, and Alfonso Soto
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Rathke’s cleft cyst ,pituitary ,transsphenoidal surgery ,cyst size ,visual impairment ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Rathke’s cleft cysts (RCC) are a common type of lesion found in the sellar or suprasellar area. They are usually monitored clinically, but in some cases, surgery may be required. However, their natural progression is not yet well understood, and the outcomes of surgery are uncertain. The objective of this study is to evaluate the natural history of Rathke’s cleft cysts in patients who are clinically monitored without treatment, and to determine the outcomes of surgery and the incidence of recurrences over time.Design and patientsNational multicentric study of patients diagnosed of Rathke’s cleft cyst (RCC- Spain) from 2000 onwards and followed in 15 tertiary centers of Spain. A total of 177 patients diagnosed of RCC followed for 67.3 months (6–215) and 88 patients who underwent surgery, (81 patients underwent immediate surgery after diagnosis and 7 later for subsequent growth) followed for 68.8 months (3–235).ResultsThe cyst size remained stable or decreased in 73.5% (133) of the patients. Only 44 patients (24.3%) experienced a cyst increase and 9 of them (5.1%) experienced an increase greater than 3 mm. In most of the patients who underwent surgery headaches and visual alterations improved, recurrence was observed in 8 (9.1%) after a median time of 96 months, and no predictors of recurrence were discovered.ConclusionsRathke’s cleft cysts without initial compressive symptoms have a low probability of growth, so conservative management is recommended. Patients who undergo transsphenoidal surgery experience rapid clinical improvement, and recurrences are infrequent. However, they can occur after a long period of time, although no predictors of recurrence have been identified.
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- 2024
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22. Effects of Heat and Dissolved Calcium on the Sorption of Uranium(VI) in Bentonite Barrier Systems
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Florie Caporuscio, Kirsten B. Sauer, Alba Gutierrez Diaz, Diem Quynh La, Amrita Bhattacharyya, Marco Voltolini, Sergio Carrero, Ruth M. Tinnacher, and Patricia M. Fox
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Chemistry ,Environmental chemistry ,Bentonite ,chemistry.chemical_element ,Sorption ,Uranium ,Calcium - Published
- 2021
23. 1368 - EVALUACIÓN DEL ESTADO NUTRICIONAL EN PACIENTES SIN DEPENDENCIA GRAVE, AL INGRESO EN MEDICINA INTERNA
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López, Elena Vaquero, González, Julia Carmona, González, Nerea Raquel Bandera, Fuego, María Alonso, Chamarro, Claudia Solar, Herias, Laura Antón, Hurtado, Alba Gutiérrez, and Sánchez, Inés Masid
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- 2023
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24. DIFFERENTIAL BRAIN REGIONAL’S INVOLVEMENT IN CONTEXTUAL MEMORIES ENCODED CLOSE IN TIME
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Menendez, Alba Gutierrez, Banqueri, Maria, and Arias, Jorge L.
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- 2023
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25. Contraceptive content shared on social media: an analysis of Twitter
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Melody Huang, Alba Gutiérrez-Sacristán, Elizabeth Janiak, Katherine Young, Anabel Starosta, Katherine Blanton, Alaleh Azhir, Caroline N. Goldfarb, Felícita Kuperwasser, Kimberly M. Schaefer, Rachel E. Stoddard, Rajet Vatsa, Allison A. Merz-Herrala, and Deborah Bartz
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LARC ,Birth control pill ,SARC ,Tweets ,Contraceptive decision making ,Contraceptive side effects ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Information on social media may affect peoples’ contraceptive decision making. We performed an exploratory analysis of contraceptive content on Twitter (recently renamed X), a popular social media platform. Methods We selected a random subset of 1% of publicly available, English-language tweets related to reversible, prescription contraceptive methods posted between January 2014 and December 2019. We oversampled tweets for the contraceptive patch to ensure at least 200 tweets per method. To create the codebook, we identified common themes specific to tweet content topics, tweet sources, and tweets soliciting information or providing advice. All posts were coded by two team members, and differences were adjudicated by a third reviewer. Descriptive analyses were reported with accompanying qualitative findings. Results During the study period, 457,369 tweets about reversible contraceptive methods were published, with a random sample of 4,434 tweets used for final analysis. Tweets most frequently discussed contraceptive method decision-making (26.7%) and side effects (20.5%), particularly for long-acting reversible contraceptive methods and the depot medroxyprogesterone acetate shot. Tweets about logistics of use or adherence were common for short-acting reversible contraceptives. Tweets were frequently posted by contraceptive consumers (50.6%). A small proportion of tweets explicitly requested information (6.2%) or provided advice (4.2%). Conclusions Clinicians should be aware that individuals are exposed to information through Twitter that may affect contraceptive perceptions and decision making, particularly regarding long-acting reversible contraceptives. Social media is a valuable source for studying contraceptive beliefs missing in traditional health research and may be used by professionals to disseminate accurate contraceptive information.
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- 2024
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26. Hypoglycemia in patients with type 2 diabetes mellitus during hospitalization: associated factors and prognostic value
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Tomás González-Vidal, Diego Rivas-Otero, Alba Gutiérrez-Hurtado, Carlos Alonso Felgueroso, Gema Martínez Tamés, Carmen Lambert, Elías Delgado-Álvarez, and Edelmiro Menéndez Torre
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Type 2 diabetes ,Hypoglycemia ,Mortality ,Prognosis ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background The risk factors for hypoglycemia during hospital admission and its consequences in patients with diabetes are not entirely known. The present study aimed to investigate the risk factors for hypoglycemia, as well as the potential implications of hypoglycemia in patients with type 2 diabetes mellitus admitted to the hospital. Methods This retrospective cohort study included 324 patients (214 [66.0%] men; median age 70 years, range 34–95 years) with type 2 diabetes admitted to a university hospital who were consulted the Endocrinology Department for glycemic control during a 12-month period. We investigated the potential role of demographic factors, metabolic factors, therapy, and comorbidities on the development of in-hospital hypoglycemia. We explored the prognostic value of hypoglycemia on mortality (both in-hospital and in the long-term), hospital readmission in the following year, and metabolic control (HbA1c value) after discharge (median follow-up, 886 days; range 19–1255 days). Results Hypoglycemia occurred in 154 (47.5%) patients during their hospitalization and was associated with advanced age, previous insulin therapy, higher Charlson Comorbidity Index, lower body mass index and lower baseline HbA1c values. Hypoglycemia was associated with greater in-hospital and long-term mortality, longer hospital stays, higher readmission rates, and poorer metabolic control after discharge. These negative consequences of hypoglycemia were more frequent in patients with severe (≤ 55 mg/dL) hypoglycemia and in patients who had hypoglycemia during a greater percentage of hospitalization days. Conclusions Hypoglycemia during hospital admission is a marker of a poor prognosis in patients with type 2 diabetes.
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- 2023
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27. Exploring the Extracellular Macromolecular Composition of Crude Extracts of Penicillium rubens Strain 212 for Elucidation Its Mode of Action as a Biocontrol Agent
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Eduardo A. Espeso, Maria Dolores Hernando, Alba Gutierrez-Docio, Maria Carreras, M. Prodanov, Silvia Moreno-Fernández, Paloma Melgarejo, Inmaculada Larena, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), and Comunidad de Madrid
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Microbiology (medical) ,Proteome ,proteome ,Plant Science ,Fractionation ,Article ,Biological control agents ,Fusarium oxysporum ,extracellular proteins ,Extracellular ,Metabolites ,Glycoside hydrolase ,biocontrol ,Mode of action ,lcsh:QH301-705.5 ,Ecology, Evolution, Behavior and Systematics ,metabolites ,chemistry.chemical_classification ,Molecular mass ,biology ,Biocontrol ,food and beverages ,biology.organism_classification ,Extracellular proteins ,Enzyme ,chemistry ,Biochemistry ,lcsh:Biology (General) ,biological control agents - Abstract
27 p.-6 fig.-9 tab., Penicillium rubens strain 212 (PO212) acts as an inducer of systemic resistance in tomato plants. The effect of crude extracellular extracts of PO212 on the soil-borne pathogen Fusarium oxysporum f. sp. lycopersici has been evaluated. Evidence of the involvement of soluble, thermo-labile, and proteinase-inactivated macromolecules present in PO212 crude extracts in the control of Fusarium vascular disease in tomato plants was found. Proteomic techniques and the availability of the access to the PO212 genome database have allowed the identification of glycosyl hydrolases, oxidases, and peptidases in these extracellular extracts. Furthermore, a bioassay-guided fractionation of PO212 crude extracellular extracts using an integrated membrane/solid phase extraction process was set up. This method enabled the separation of a PO212 crude extracellular extract of seven days of growth into four fractions of different molecular sizes and polarities: high molecular mass protein fraction >5 kDa, middle molecular mass protein fraction 5–1 kDa, low molecular mass metabolite fraction, and nutrients from culture medium (mainly glucose and minerals). The high and middle molecular mass protein fractions retained disease control activity in a way similar to that of the control extracts. Proteomic techniques have allowed the identification of nine putatively secreted proteins in the high molecular mass protein fraction matching those identified in the total crude extracts. Therefore, these enzymes are considered to be potentially responsible of the crude extracellular extract-induced resistance in tomato plants against F. oxysporum f. sp. lycopersici. Further studies are required to establish which of the identified proteins participate in the PO212’s action mode as a biocontrol agent., This study was supported by funds from RTA2013-00060-C050-00, RTA2017-00019-C03-01 and RTA2017-00019-C03-02 (Plan Nacional de I+D, MINECO and MCINNU, Spain), to IL and grants BFU2015-66806-R (MINECO) and RTI2018-094263-B-100 (MICIU/AEI) to EAE both partially supported by FEDER/EU. M. Carreras received a scholarship from SGIT-INIA. Alba Gutiérrez and Silvia Moreno thank to Consejería de Educación e Investigación from the Madrid’s Community for the financial support of contracts PEJ-2018-AI/BIO-11720 and PEJD-2018-POST/BIO-8797, respectively.
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- 2020
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28. Evaluation of an Integrated Ultrafiltration/Solid Phase Extraction Process for Purification of Oligomeric Grape Seed Procyanidins
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José Manuel Silván, Marin Prodanov, Gonzalo L. Alonso, Adolfo J. Martínez-Rodríguez, Silvia Moreno-Fernández, Paula Almodóvar, Alba Gutierrez-Docio, Ministerio de Economía y Competitividad (España), Agencia Estatal de Investigación (España), and Ministerio de Ciencia, Innovación y Universidades (España)
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food.ingredient ,purification ,tangential-flow pressure-driven membrane ultrafiltration ,oligomeric procyanidins ,Ultrafiltration ,Filtration and Separation ,lcsh:Chemical technology ,01 natural sciences ,Article ,law.invention ,0404 agricultural biotechnology ,food ,Adsorption ,Oligomeric procyanidins ,law ,Chemical Engineering (miscellaneous) ,lcsh:TP1-1185 ,solid-phase extraction ,Solid phase extraction ,lcsh:Chemical engineering ,grape seed extract ,Purification ,Filtration ,Solid-phase extraction ,Chromatography ,Chemistry ,Process Chemistry and Technology ,010401 analytical chemistry ,Extraction (chemistry) ,lcsh:TP155-156 ,04 agricultural and veterinary sciences ,Tangential-flow pressure-driven membrane ultrafiltration ,040401 food science ,0104 chemical sciences ,Membrane ,Scientific method ,Grape seed extract - Abstract
This article belongs to the Special Issue Integrated Membrane Systems and Processes., The effectiveness of a preparative integrated ultrafiltration/solid-phase extraction (UF/SPE) process for purification of oligomeric procyanidins (OPCs) from a crude grape seed extract (GSE) was studied for the first time. The separation of OPCs from polymeric procyanidins (PPCs) by UF was very efficient. The membrane showed an acceptable filtration flux of 6 to 3.5 L/h·m2 at 0.5 bar of transmembrane pressure and 95% recovery of its water flux after chemical cleaning. The process was scalable to a pilot scale. The separation of very polar and ionic species from OPCs by SPE (XAD7HP and XAD16 resins) was also very good, but both adsorbents lost their retention capacities quickly, due probably to irreversible retention of OPCs/PPCs. Even though the global purification of OPCs by the integrated UF/SPE process allowed the recovery of 24.2 g of highly purified OPCs (83% purity) from 14.4 L of crude grape seed extract, the use of these adsorbents for further purification of the OPCs was very limited., This research was funded by MINECO (Spain), Project HELIFOOD (AGL2017-89566-R).
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- 2020
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29. Extracts from the edible insects Acheta domesticus and Tenebrio molitor with improved fatty acid profile due to ultrasound assisted or pressurized liquid extraction
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Diana Martin, Joaquín Navarro del Hierro, Paz Otero, Guillermo Reglero, Alba Gutierrez-Docio, UAM. Departamento de Química Física Aplicada, Comunidad de Madrid, and Ministerio de Educación, Cultura y Deporte (España)
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Acheta domesticus ,Linoleic acid ,01 natural sciences ,Analytical Chemistry ,Gryllidae ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Animals ,Ultrasonics ,Food science ,Fatty acids ,Tenebrio ,Tenebrio molitor ,chemistry.chemical_classification ,Ethanol ,biology ,Cholesterol ,010401 analytical chemistry ,Extraction (chemistry) ,Fatty acid ,food and beverages ,Física ,04 agricultural and veterinary sciences ,General Medicine ,Química ,biology.organism_classification ,040401 food science ,Lipids ,0104 chemical sciences ,chemistry ,Acheta ,Pressurized liquid extraction ,Saturated fatty acid ,Ultrasound assisted extraction ,Edible insects ,Food Science ,Polyunsaturated fatty acid - Abstract
Extracts from the edible insects Acheta domesticus and Tenebrio molitor were obtained by ultrasound-assisted extraction (UAE) and pressurized-liquid extraction (PLE) using ethanol (E) or ethanol:water (E:W). Extraction yield, fatty acid profile, nutritional impact and cholesterol content were determined and compared with the initial insects. The highest extraction yield corresponded to PLE-T. molitor extracts. A decrease in total saturated fatty acid (SFA) and monounsaturated fatty acid (MUFA) contents, and an increase in the total polyunsaturated fatty acid (PUFA) content were observed for both UAE-E:W insect extracts, due to an enrichment in linoleic acid. The lipid indices (PUFA/SFA ratio, atherogenic and thrombogenic indices) for both UAE-E:W extracts were significantly improved compared with the initial insects. Although either extraction procedure led to cholesterol enrichment, the UAE-E:W conditions favoured the lowest concentration. Therefore, insects extracts with improved fatty acid profile can be selectively obtained, being UAE-E:W conditions preferred from the nutritional point of view., This work was supported by the Community of Madrid, Spain (ALIBIRD2020-CM, S2018/BAA-4343). Paz Otero thanks the Comunidad de Madrid for funding his Postdoctoral Grant (Atraccion de Talento 2016-T2/BIO-1791). Joaquín Navarro del Hierro thanks the Ministerio de Educación, Cultura y Deporte for funding his research with a FPU predoctoral contract (FPU 15/04236).
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- 2020
30. Characterization, antioxidant activity, and inhibitory effect on pancreatic lipase of extracts from the edible insects Acheta domesticus and Tenebrio molitor
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Paz Otero, Alba Gutierrez-Docio, Joaquín Navarro del Hierro, Diana Martin, Guillermo Reglero, Comunidad de Madrid, Ministerio de Educación, Cultura y Deporte (España), and UAM. Departamento de Química Física Aplicada
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Antioxidant ,DPPH ,medicine.medical_treatment ,01 natural sciences ,Antioxidants ,Bioactive compounds ,Analytical Chemistry ,Gryllidae ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Acheta dometicus ,medicine ,Animals ,Pancreatic lipase ,Enzyme Inhibitors ,Lipase ,Tenebrio ,Inhibitory effect ,Tenebrio molitor ,Chromatography ,Ethanol ,biology ,Chemistry ,010401 analytical chemistry ,Extraction (chemistry) ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,040401 food science ,0104 chemical sciences ,Acheta ,Pressurized-liquid extraction ,Ultrasound-assisted extraction ,biology.protein ,Edible insects ,Ciencia y Tecnología de Alimentos ,Food Science - Abstract
Extracts from the edible insects Acheta domesticus and Tenebrio molitor were obtained by ultrasound-assisted extraction (UAE) and pressurized-liquid extraction (PLE) using ethanol (E) or ethanol:water (E:W). Characterization by GC–MS was performed and total phenolic compounds (TPC), antioxidant activity (DPPH) and pancreatic lipase inhibitory capacity were assayed. Most extracts, mainly ethanolic extracts, predominantly presented lipids as free fatty acids, followed by aminoacids, organic acids, carbohydrates, hydrocarbons and sterols. The UAE-E:W extracts were different, being characterized by organic acids for A. domesticus, or aminoacids for T. molitor. All the extracts exhibited antioxidant activity, which correlated with TPC values, being the E:W extracts the most effective. All the extracts showed inhibitory activity of lipase, although those from T. molitor and extracted by PLE were the most effective. Therefore, bioactive insect extracts can be selectively obtained by advanced methods of extraction, being aqueous ethanol preferred for antioxidant activity and PLE for inhibitory lipase activity., This work was supported by the Community of Madrid, Spain (ALIBIRD2020-CM, S2018/BAA-4343). Joaquín Navarro del Hierro thanks the Ministerio de Educación, Cultura y Deporte for funding his research with a FPU predoctoral contract (FPU 15/04236). Paz Otero thanks the Comunidad de Madrid for funding his Postdoctoral Grant (Atraccion de Talento 2016-T2/BIO-1791).
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- 2020
31. Sorption of Uranium(VI) onto Montmorillonite in the Presence of Calcite
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Ben Urick, Allen Shaw, Diem Quynh La, Alba Gutierrez Diaz, Christophe Tournassat, and Ruth Tinnacher
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- 2020
32. Neurological diagnoses in hospitalized COVID-19 patients associated with adverse outcomes: A multinational cohort study.
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Meghan R Hutch, Jiyeon Son, Trang T Le, Chuan Hong, Xuan Wang, Zahra Shakeri Hossein Abad, Michele Morris, Alba Gutiérrez-Sacristán, Jeffrey G Klann, Anastasia Spiridou, Ashley Batugo, Riccardo Bellazzi, Vincent Benoit, Clara-Lea Bonzel, William A Bryant, Lorenzo Chiudinelli, Kelly Cho, Priyam Das, Tomás González González, David A Hanauer, Darren W Henderson, Yuk-Lam Ho, Ne Hooi Will Loh, Adeline Makoudjou, Simran Makwana, Alberto Malovini, Bertrand Moal, Danielle L Mowery, Antoine Neuraz, Malarkodi Jebathilagam Samayamuthu, Fernando J Sanz Vidorreta, Emily R Schriver, Petra Schubert, Jeffery Talbert, Amelia L M Tan, Byorn W L Tan, Bryce W Q Tan, Valentina Tibollo, Patric Tippman, Guillaume Verdy, William Yuan, Paul Avillach, Nils Gehlenborg, Gilbert S Omenn, Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Shyam Visweswaran, Tianxi Cai, Yuan Luo, and Zongqi Xia
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Few studies examining the patient outcomes of concurrent neurological manifestations during acute COVID-19 leveraged multinational cohorts of adults and children or distinguished between central and peripheral nervous system (CNS vs. PNS) involvement. Using a federated multinational network in which local clinicians and informatics experts curated the electronic health records data, we evaluated the risk of prolonged hospitalization and mortality in hospitalized COVID-19 patients from 21 healthcare systems across 7 countries. For adults, we used a federated learning approach whereby we ran Cox proportional hazard models locally at each healthcare system and performed a meta-analysis on the aggregated results to estimate the overall risk of adverse outcomes across our geographically diverse populations. For children, we reported descriptive statistics separately due to their low frequency of neurological involvement and poor outcomes. Among the 106,229 hospitalized COVID-19 patients (104,031 patients ≥18 years; 2,198 patients
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- 2024
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33. Procyanidin-Rich Extract from Grape Seeds as a Putative Tool against Helicobacter pylori
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Silvia Moreno-Fernández, Adolfo J. Martínez-Rodríguez, M. Prodanov, Teresa Alarcón-Cavero, Alba Gutierrez-Docio, José Manuel Silván, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), and Comunidad de Madrid
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antibiotic resistance ,Health (social science) ,food.ingredient ,medicine.drug_class ,Antibiotics ,Context (language use) ,Plant Science ,lcsh:Chemical technology ,Health Professions (miscellaneous) ,Microbiology ,High-performance liquid chromatography ,Article ,03 medical and health sciences ,Minimum inhibitory concentration ,chemistry.chemical_compound ,0302 clinical medicine ,food ,antibacterial activity ,medicine ,lcsh:TP1-1185 ,Food science ,grape seed extract ,Procyanidins ,030304 developmental biology ,0303 health sciences ,Helicobacter pylori ,Chemistry ,Catechin ,procyanidins ,Proanthocyanidin ,Grape seed extract ,030211 gastroenterology & hepatology ,Antibacterial activity ,Food Science - Abstract
Strains of Helicobacter pylori (H. pylori) resistant to various antibiotics have increased in recent years. In this context, the search for new therapeutic approaches is crucial. The aim of the present study was to demonstrate the antibacterial activity of a procyanidin-rich extract obtained from food-grade winery grape seeds against 14 H. pylori strains and elucidate its phenolic composition. Ten strains (71.4%) showed resistance to at least some of the tested antibiotics, while four isolates (28.6%) were susceptible to all antibiotics. Resistance to more than one class of antibiotics was observed in six strains (42.9%). The extract was able to inhibit the growth of all H. pylori strains in a range of a minimum inhibitory concentration (MIC) from 0.015 mg/mL to 0.125 mg/mL, confirming also the existence of a strain-dependent effect. The phenolic composition determined by reverse phase high pressure liquid chromatography, photodiode array, and mass spectrometry detection (RP-HPLC-PAD-MS) analysis revealed the presence of 43 individual compounds and allowed the quantification of 41 of them, including seven procyanidin tetramers, seven procyanidin pentamers, and six galloylated procyanidin dimers, trimers, and tetramers. The extract was composed mainly by catechin and procyanidin oligomers with a total amount of 5801 mg/100 g, which represent 92% of the total individual phenolic content. Among them, the most abundant were catechins (2047 mg/100 g), followed by procyanidin dimers (1550 mg/100 g), trimers (1176 mg/100 g), tetramers (436 mg/100 g), and pentamers (296 mg/100 g) that represent 35, 27, 20, 8, and 5%, respectively of the total flavanol constituents. The composition profile information may help to improve the production process of useful antibacterial extracts against H. pylori., This research was funded by MINECO (Spain), Project HELIFOOD (AGL2017-89566-R). Alba Gutiérrez and Silvia Moreno thank to Consejería de Educación e Investigación from the Madrid’s Community for the financial support of contracts PEJ-2018-AI/BIO-11720 and PEJD-2018-POST/BIO-8797, respectively.
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- 2020
34. Correction: The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system
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Kenneth D. Mandl, Tracy Glauser, Ian D. Krantz, Paul Avillach, Anna Bartels, Alan H. Beggs, Sawona Biswas, Florence T. Bourgeois, Jeremy Corsmo, Andrew Dauber, Batsal Devkota, Gary R. Fleisher, Allison P. Heath, Ingo Helbig, Joel N. Hirschhorn, Judson Kilbourn, Sek Won Kong, Susan Kornetsky, Joseph A. Majzoub, Keith Marsolo, Lisa J. Martin, Jeremy Nix, Amy Schwarzhoff, Jason Stedman, Arnold Strauss, Kristen L. Sund, Deanne M. Taylor, Peter S. White, Eric Marsh, Adda Grimberg, Colin Hawkes, Darlene Barkman, Erin M. Borglund, Ramkrishna Chakrabarty, Alka Chandel, Anil Kumar Degala, Thomas DeSain, Philip Dexheimer, Parth Divekar, Alyssa Ellis, Mike Furgason, Christopher Geehan, Andrew Joseph Guidetti, Alba Gutierrez, Barbara Hallinan, Becca Harper, Niloofar Jalali, Jaspreet Khanna, Christopher Kirby, Gabor Korodi, Michal Kouril, Amy Kratchman, Ranjay Kumar, Guillaume Labilloy, In-Hee Lee, Bria Morgan, James Morgan, Louis J Muglia, Aleksandr Nikitin, Mike Pistone, Anna Poduri, Andrew Rupert, Kristen Safier, Piotr Sliz, Gelvina Stevenson, Joseph St. Geme, Vidhu Thaker, Simone Temporal, Prakash Velayutham, Julie Wijesooriya, Bryan Wolf, Andrew Wooten, Alan Yen, and Yu Zhang
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Electronic Data Processing ,Biomedical Research ,Databases, Factual ,Information Dissemination ,Correction ,Information Storage and Retrieval ,Genomics ,Research Personnel ,Databases, Genetic ,Humans ,Genetics (clinical) ,Biological Specimen Banks ,Data Management ,Ethics Committees, Research - Abstract
Clinicians and researchers must contextualize a patient's genetic variants against population-based references with detailed phenotyping. We sought to establish globally scalable technology, policy, and procedures for sharing biosamples and associated genomic and phenotypic data on broadly consented cohorts, across sites of care.Three of the nation's leading children's hospitals launched the Genomic Research and Innovation Network (GRIN), with federated information technology infrastructure, harmonized biobanking protocols, and material transfer agreements. Pilot studies in epilepsy and short stature were completed to design and test the collaboration model.Harmonized, broadly consented institutional review board (IRB) protocols were approved and used for biobank enrollment, creating ever-expanding, compatible biobanks. An open source federated query infrastructure was established over genotype-phenotype databases at the three hospitals. Investigators securely access the GRIN platform for prep to research queries, receiving aggregate counts of patients with particular phenotypes or genotypes in each biobank. With proper approvals, de-identified data is exported to a shared analytic workspace. Investigators at all sites enthusiastically collaborated on the pilot studies, resulting in multiple publications. Investigators have also begun to successfully utilize the infrastructure for grant applications.The GRIN collaboration establishes the technology, policy, and procedures for a scalable genomic research network.
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- 2020
35. Clinical phenotypes and outcomes in children with multisystem inflammatory syndrome across SARS-CoV-2 variant eras: a multinational study from the 4CE consortiumResearch in context
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Francesca Sperotto, Alba Gutiérrez-Sacristán, Simran Makwana, Xiudi Li, Valerie N. Rofeberg, Tianxi Cai, Florence T. Bourgeois, Gilbert S. Omenn, David A. Hanauer, Carlos Sáez, Clara-Lea Bonzel, Emily Bucholz, Audrey Dionne, Matthew D. Elias, Noelia García-Barrio, Tomás González González, Richard W. Issitt, Kate F. Kernan, Jessica Laird-Gion, Sarah E. Maidlow, Kenneth D. Mandl, Taha Mohseni Ahooyi, Cinta Moraleda, Michele Morris, Karyn L. Moshal, Miguel Pedrera-Jiménez, Mohsin A. Shah, Andrew M. South, Anastasia Spiridou, Deanne M. Taylor, Guillaume Verdy, Shyam Visweswaran, Xuan Wang, Zongqi Xia, Joany M. Zachariasse, Jane W. Newburger, Paul Avillach, James R. Aaron, Atif Adam, Giuseppe Agapito, Adem Albayrak, Giuseppe Albi, Mario Alessiani, Anna Alloni, Danilo F. Amendola, François Angoulvant, Li LLJ. Anthony, Bruce J. Aronow, Fatima Ashraf, Andrew Atz, Vidul Ayakulangara Panickan, Paula S. Azevedo, Rafael Badenes, James Balshi, Ashley Batugo, Brendin R. Beaulieu-Jones, Brett K. Beaulieu-Jones, Douglas S. Bell, Antonio Bellasi, Riccardo Bellazzi, Vincent Benoit, Michele Beraghi, José Luis Bernal-Sobrino, Mélodie Bernaux, Romain Bey, Surbhi Bhatnagar, Alvar Blanco-Martínez, Martin Boeker, John Booth, Silvano Bosari, Robert L. Bradford, Gabriel A. Brat, Stéphane Bréant, Nicholas W. Brown, Raffaele Bruno, William A. Bryant, Mauro Bucalo, Anita Burgun, Mario Cannataro, Aldo Carmona, Anna Maria Cattelan, Charlotte Caucheteux, Julien Champ, Jin Chen, Krista Y. Chen, Luca Chiovato, Lorenzo Chiudinelli, Kelly Cho, James J. Cimino, Tiago K. Colicchio, Sylvie Cormont, Sébastien Cossin, Jean B. Craig, Juan Luis Cruz-Bermúdez, Jaime Cruz-Rojo, Arianna Dagliati, Mohamad Daniar, Christel Daniel, Priyam Das, Batsal Devkota, Rui Duan, Julien Dubiel, Scott L. DuVall, Loic Esteve, Hossein Estiri, Shirley Fan, Robert W. Follett, Thomas Ganslandt, Lana X. Garmire, Nils Gehlenborg, Emily J. Getzen, Alon Geva, Rachel SJ. Goh, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Pietro H. Guzzi, Larry Han, Christian Haverkamp, Derek Y. Hazard, Bing He, Darren W. Henderson, Martin Hilka, Yuk-Lam Ho, John H. Holmes, Jacqueline P. Honerlaw, Chuan Hong, Kenneth M. Huling, Meghan R. Hutch, Anne Sophie Jannot, Vianney Jouhet, Mundeep K. Kainth, Kernan F. Kate, Ramakanth Kavuluru, Mark S. Keller, Chris J. Kennedy, Daniel A. Key, Katie Kirchoff, Jeffrey G. Klann, Isaac S. Kohane, Ian D. Krantz, Detlef Kraska, Ashok K. Krishnamurthy, Sehi L'Yi, Judith Leblanc, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Ne Hooi Will Loh, Qi Long, Sara Lozano-Zahonero, Yuan Luo, Kristine E. Lynch, Sadiqa Mahmood, Adeline Makoudjou, Alberto Malovini, Chengsheng Mao, Anupama Maram, Monika Maripuri, Patricia Martel, Marcelo R. Martins, Jayson S. Marwaha, Aaron J. Masino, Maria Mazzitelli, Diego R. Mazzotti, Arthur Mensch, Marianna Milano, Marcos F. Minicucci, Bertrand Moal, Jason H. Moore, Jeffrey S. Morris, Sajad Mousavi, Danielle L. Mowery, Douglas A. Murad, Shawn N. Murphy, Thomas P. Naughton, Carlos Tadeu Breda Neto, Antoine Neuraz, Jane Newburger, Kee Yuan Ngiam, Wanjiku FM. Njoroge, James B. Norman, Jihad Obeid, Marina P. Okoshi, Karen L. Olson, Nina Orlova, Brian D. Ostasiewski, Nathan P. Palmer, Nicolas Paris, Lav P. Patel, Ashley C. Pfaff, Emily R. Pfaff, Danielle Pillion, Sara Pizzimenti, Tanu Priya, Hans U. Prokosch, Robson A. Prudente, Andrea Prunotto, Víctor Quirós-González, Rachel B. Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig-Domínguez, Pablo Rojo, Nekane Romero-Garcia, Paula Rubio-Mayo, Paolo Sacchi, Elisa Salamanca, Malarkodi Jebathilagam Samayamuthu, L. Nelson Sanchez-Pinto, Arnaud Sandrin, Nandhini Santhanam, Janaina C.C. Santos, Fernando J. Sanz Vidorreta, Maria Savino, Emily R. Schriver, Petra Schubert, Juergen Schuettler, Luigia Scudeller, Neil J. Sebire, Pablo Serrano-Balazote, Patricia Serre, Arnaud Serret-Larmande, Zahra Shakeri Hossein Abad, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Zachary H. Strasser, Amelia LM. Tan, Bryce W.Q. Tan, Byorn W.L. Tan, Suzana E. Tanni, Ana I. Terriza-Torres, Valentina Tibollo, Patric Tippmann, Emma MS. Toh, Carlo Torti, Enrico M. Trecarichi, Andrew K. Vallejos, Gael Varoquaux, Margaret E. Vella, Jill-Jênn Vie, Michele Vitacca, Kavishwar B. Wagholikar, Lemuel R. Waitman, Demian Wassermann, Griffin M. Weber, Martin Wolkewitz, Scott Wong, Xin Xiong, Ye Ye, Nadir Yehya, William Yuan, Janet J. Zahner, Alberto Zambelli, Harrison G. Zhang, Daniela Zöller, Valentina Zuccaro, and Chiara Zucco
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Multisystem inflammatory syndrome ,Paediatric inflammatory multisystem syndrome ,COVID-19 ,SARS-CoV-2 ,Variants ,Pediatrics ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Multisystem inflammatory syndrome in children (MIS-C) is a severe complication of SARS-CoV-2 infection. It remains unclear how MIS-C phenotypes vary across SARS-CoV-2 variants. We aimed to investigate clinical characteristics and outcomes of MIS-C across SARS-CoV-2 eras. Methods: We performed a multicentre observational retrospective study including seven paediatric hospitals in four countries (France, Spain, U.K., and U.S.). All consecutive confirmed patients with MIS-C hospitalised between February 1st, 2020, and May 31st, 2022, were included. Electronic Health Records (EHR) data were used to calculate pooled risk differences (RD) and effect sizes (ES) at site level, using Alpha as reference. Meta-analysis was used to pool data across sites. Findings: Of 598 patients with MIS-C (61% male, 39% female; mean age 9.7 years [SD 4.5]), 383 (64%) were admitted in the Alpha era, 111 (19%) in the Delta era, and 104 (17%) in the Omicron era. Compared with patients admitted in the Alpha era, those admitted in the Delta era were younger (ES −1.18 years [95% CI −2.05, −0.32]), had fewer respiratory symptoms (RD −0.15 [95% CI −0.33, −0.04]), less frequent non-cardiogenic shock or systemic inflammatory response syndrome (SIRS) (RD −0.35 [95% CI −0.64, −0.07]), lower lymphocyte count (ES −0.16 × 109/uL [95% CI −0.30, −0.01]), lower C-reactive protein (ES −28.5 mg/L [95% CI −46.3, −10.7]), and lower troponin (ES −0.14 ng/mL [95% CI −0.26, −0.03]). Patients admitted in the Omicron versus Alpha eras were younger (ES −1.6 years [95% CI −2.5, −0.8]), had less frequent SIRS (RD −0.18 [95% CI −0.30, −0.05]), lower lymphocyte count (ES −0.39 × 109/uL [95% CI −0.52, −0.25]), lower troponin (ES −0.16 ng/mL [95% CI −0.30, −0.01]) and less frequently received anticoagulation therapy (RD −0.19 [95% CI −0.37, −0.04]). Length of hospitalization was shorter in the Delta versus Alpha eras (−1.3 days [95% CI −2.3, −0.4]). Interpretation: Our study suggested that MIS-C clinical phenotypes varied across SARS-CoV-2 eras, with patients in Delta and Omicron eras being younger and less sick. EHR data can be effectively leveraged to identify rare complications of pandemic diseases and their variation over time. Funding: None.
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- 2023
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36. Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort studyResearch in Context
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Arianna Dagliati, Zachary H. Strasser, Zahra Shakeri Hossein Abad, Jeffrey G. Klann, Kavishwar B. Wagholikar, Rebecca Mesa, Shyam Visweswaran, Michele Morris, Yuan Luo, Darren W. Henderson, Malarkodi Jebathilagam Samayamuthu, Bryce W.Q. Tan, Guillame Verdy, Gilbert S. Omenn, Zongqi Xia, Riccardo Bellazzi, Shawn N. Murphy, John H. Holmes, Hossein Estiri, James R. Aaron, Giuseppe Agapito, Adem Albayrak, Giuseppe Albi, Mario Alessiani, Anna Alloni, Danilo F. Amendola, François Angoulvant, Li L.L.J. Anthony, Bruce J. Aronow, Fatima Ashraf, Andrew Atz, Paul Avillach, Paula S. Azevedo, James Balshi, Brett K. Beaulieu-Jones, Douglas S. Bell, Antonio Bellasi, Vincent Benoit, Michele Beraghi, José Luis Bernal-Sobrino, Mélodie Bernaux, Romain Bey, Surbhi Bhatnagar, Alvar Blanco-Martínez, Clara-Lea Bonzel, John Booth, Silvano Bosari, Florence T. Bourgeois, Robert L. Bradford, Gabriel A. Brat, Stéphane Bréant, Nicholas W. Brown, Raffaele Bruno, William A. Bryant, Mauro Bucalo, Emily Bucholz, Anita Burgun, Tianxi Cai, Mario Cannataro, Aldo Carmona, Charlotte Caucheteux, Julien Champ, Jin Chen, Krista Y. Chen, Luca Chiovato, Lorenzo Chiudinelli, Kelly Cho, James J. Cimino, Tiago K. Colicchio, Sylvie Cormont, Sébastien Cossin, Jean B. Craig, Juan Luis Cruz-Bermúdez, Jaime Cruz-Rojo, Mohamad Daniar, Christel Daniel, Priyam Das, Batsal Devkota, Audrey Dionne, Rui Duan, Julien Dubiel, Scott L. DuVall, Loic Esteve, Shirley Fan, Robert W. Follett, Thomas Ganslandt, Noelia García- Barrio, Lana X. Garmire, Nils Gehlenborg, Emily J. Getzen, Alon Geva, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Alba Gutiérrez-Sacristán, Larry Han, David A. Hanauer, Christian Haverkamp, Derek Y. Hazard, Bing He, Martin Hilka, Yuk-Lam Ho, Chuan Hong, Kenneth M. Huling, Meghan R. Hutch, Richard W. Issitt, Anne Sophie Jannot, Vianney Jouhet, Ramakanth Kavuluru, Mark S. Keller, Chris J. Kennedy, Daniel A. Key, Katie Kirchoff, Isaac S. Kohane, Ian D. Krantz, Detlef Kraska, Ashok K. Krishnamurthy, Sehi L'Yi, Trang T. Le, Judith Leblanc, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Ne Hooi Will Loh, Qi Long, Sara Lozano-Zahonero, Kristine E. Lynch, Sadiqa Mahmood, Sarah E. Maidlow, Adeline Makoudjou, Alberto Malovini, Kenneth D. Mandl, Chengsheng Mao, Anupama Maram, Patricia Martel, Marcelo R. Martins, Jayson S. Marwaha, Aaron J. Masino, Maria Mazzitelli, Arthur Mensch, Marianna Milano, Marcos F. Minicucci, Bertrand Moal, Taha Mohseni Ahooyi, Jason H. Moore, Cinta Moraleda, Jeffrey S. Morris, Karyn L. Moshal, Sajad Mousavi, Danielle L. Mowery, Douglas A. Murad, Thomas P. Naughton, Carlos Tadeu Breda Neto, Antoine Neuraz, Jane Newburger, Kee Yuan Ngiam, Wanjiku F.M. Njoroge, James B. Norman, Jihad Obeid, Marina P. Okoshi, Karen L. Olson, Nina Orlova, Brian D. Ostasiewski, Nathan P. Palmer, Nicolas Paris, Lav P. Patel, Miguel Pedrera-Jiménez, Emily R. Pfaff, Ashley C. Pfaff, Danielle Pillion, Sara Pizzimenti, Hans U. Prokosch, Robson A. Prudente, Andrea Prunotto, Víctor Quirós-González, Rachel B. Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig-Domínguez, Pablo Rojo, Paula Rubio-Mayo, Paolo Sacchi, Carlos Sáez, Elisa Salamanca, L. Nelson Sanchez-Pinto, Arnaud Sandrin, Nandhini Santhanam, Janaina C.C. Santos, Fernando J. Sanz Vidorreta, Maria Savino, Emily R. Schriver, Petra Schubert, Juergen Schuettler, Luigia Scudeller, Neil J. Sebire, Pablo Serrano-Balazote, Patricia Serre, Arnaud Serret-Larmande, Mohsin Shah, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Andrew M. South, Anastasia Spiridou, Amelia L.M. Tan, Byorn W.L. Tan, Suzana E. Tanni, Deanne M. Taylor, Ana I. Terriza-Torres, Valentina Tibollo, Patric Tippmann, Emma M.S. Toh, Carlo Torti, Enrico M. Trecarichi, Yi-Ju Tseng, Andrew K. Vallejos, Gael Varoquaux, Margaret E. Vella, Guillaume Verdy, Jill-Jênn Vie, Michele Vitacca, Lemuel R. Waitman, Xuan Wang, Demian Wassermann, Griffin M. Weber, Martin Wolkewitz, Scott Wong, Xin Xiong, Ye Ye, Nadir Yehya, William Yuan, Alberto Zambelli, Harrison G. Zhang, Daniela Zo¨ller, Valentina Zuccaro, and Chiara Zucco
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Post-acute sequelae of SARS-CoV-2 ,PASC ,COVID-19 ,SARS-CoV-2 ,Electronic health records ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Characterizing Post-Acute Sequelae of COVID (SARS-CoV-2 Infection), or PASC has been challenging due to the multitude of sub-phenotypes, temporal attributes, and definitions. Scalable characterization of PASC sub-phenotypes can enhance screening capacities, disease management, and treatment planning. Methods: We conducted a retrospective multi-centre observational cohort study, leveraging longitudinal electronic health record (EHR) data of 30,422 patients from three healthcare systems in the Consortium for the Clinical Characterization of COVID-19 by EHR (4CE). From the total cohort, we applied a deductive approach on 12,424 individuals with follow-up data and developed a distributed representation learning process for providing augmented definitions for PASC sub-phenotypes. Findings: Our framework characterized seven PASC sub-phenotypes. We estimated that on average 15.7% of the hospitalized COVID-19 patients were likely to suffer from at least one PASC symptom and almost 5.98%, on average, had multiple symptoms. Joint pain and dyspnea had the highest prevalence, with an average prevalence of 5.45% and 4.53%, respectively. Interpretation: We provided a scalable framework to every participating healthcare system for estimating PASC sub-phenotypes prevalence and temporal attributes, thus developing a unified model that characterizes augmented sub-phenotypes across the different systems. Funding: Authors are supported by National Institute of Allergy and Infectious Diseases, National Institute on Aging, National Center for Advancing Translational Sciences, National Medical Research Council, National Institute of Neurological Disorders and Stroke, European Union, National Institutes of Health, National Center for Advancing Translational Sciences.
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- 2023
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37. International electronic health record-derived post-acute sequelae profiles of COVID-19 patients
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Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L’Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Tianxi Cai, Andrew M. South, Isaac S. Kohane, and Griffin M. Weber
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract The risk profiles of post-acute sequelae of COVID-19 (PASC) have not been well characterized in multi-national settings with appropriate controls. We leveraged electronic health record (EHR) data from 277 international hospitals representing 414,602 patients with COVID-19, 2.3 million control patients without COVID-19 in the inpatient and outpatient settings, and over 221 million diagnosis codes to systematically identify new-onset conditions enriched among patients with COVID-19 during the post-acute period. Compared to inpatient controls, inpatient COVID-19 cases were at significant risk for angina pectoris (RR 1.30, 95% CI 1.09–1.55), heart failure (RR 1.22, 95% CI 1.10–1.35), cognitive dysfunctions (RR 1.18, 95% CI 1.07–1.31), and fatigue (RR 1.18, 95% CI 1.07–1.30). Relative to outpatient controls, outpatient COVID-19 cases were at risk for pulmonary embolism (RR 2.10, 95% CI 1.58–2.76), venous embolism (RR 1.34, 95% CI 1.17–1.54), atrial fibrillation (RR 1.30, 95% CI 1.13–1.50), type 2 diabetes (RR 1.26, 95% CI 1.16–1.36) and vitamin D deficiency (RR 1.19, 95% CI 1.09–1.30). Outpatient COVID-19 cases were also at risk for loss of smell and taste (RR 2.42, 95% CI 1.90–3.06), inflammatory neuropathy (RR 1.66, 95% CI 1.21–2.27), and cognitive dysfunction (RR 1.18, 95% CI 1.04–1.33). The incidence of post-acute cardiovascular and pulmonary conditions decreased across time among inpatient cases while the incidence of cardiovascular, digestive, and metabolic conditions increased among outpatient cases. Our study, based on a federated international network, systematically identified robust conditions associated with PASC compared to control groups, underscoring the multifaceted cardiovascular and neurological phenotype profiles of PASC.
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- 2022
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38. International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality
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Griffin M. Weber, Chuan Hong, Zongqi Xia, Nathan P. Palmer, Paul Avillach, Sehi L’Yi, Mark S. Keller, Shawn N. Murphy, Alba Gutiérrez-Sacristán, Clara-Lea Bonzel, Arnaud Serret-Larmande, Antoine Neuraz, Gilbert S. Omenn, Shyam Visweswaran, Jeffrey G. Klann, Andrew M. South, Ne Hooi Will Loh, Mario Cannataro, Brett K. Beaulieu-Jones, Riccardo Bellazzi, Giuseppe Agapito, Mario Alessiani, Bruce J. Aronow, Douglas S. Bell, Vincent Benoit, Florence T. Bourgeois, Luca Chiovato, Kelly Cho, Arianna Dagliati, Scott L. DuVall, Noelia García Barrio, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Richard W. Issitt, Molei Liu, Yuan Luo, Kristine E. Lynch, Sarah E. Maidlow, Alberto Malovini, Kenneth D. Mandl, Chengsheng Mao, Michael E. Matheny, Jason H. Moore, Jeffrey S. Morris, Michele Morris, Danielle L. Mowery, Kee Yuan Ngiam, Lav P. Patel, Miguel Pedrera-Jimenez, Rachel B. Ramoni, Emily R. Schriver, Petra Schubert, Pablo Serrano Balazote, Anastasia Spiridou, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Carlo Torti, Enrico M. Trecarichi, Xuan Wang, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Isaac S. Kohane, Tianxi Cai, and Gabriel A. Brat
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Given the growing number of prediction algorithms developed to predict COVID-19 mortality, we evaluated the transportability of a mortality prediction algorithm using a multi-national network of healthcare systems. We predicted COVID-19 mortality using baseline commonly measured laboratory values and standard demographic and clinical covariates across healthcare systems, countries, and continents. Specifically, we trained a Cox regression model with nine measured laboratory test values, standard demographics at admission, and comorbidity burden pre-admission. These models were compared at site, country, and continent level. Of the 39,969 hospitalized patients with COVID-19 (68.6% male), 5717 (14.3%) died. In the Cox model, age, albumin, AST, creatine, CRP, and white blood cell count are most predictive of mortality. The baseline covariates are more predictive of mortality during the early days of COVID-19 hospitalization. Models trained at healthcare systems with larger cohort size largely retain good transportability performance when porting to different sites. The combination of routine laboratory test values at admission along with basic demographic features can predict mortality in patients hospitalized with COVID-19. Importantly, this potentially deployable model differs from prior work by demonstrating not only consistent performance but also reliable transportability across healthcare systems in the US and Europe, highlighting the generalizability of this model and the overall approach.
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- 2022
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39. Escenarios en la Transición ecológica: el respeto a la biodiversidad como desafío de las políticas económicas y de empleo
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Daniel Albarracín Sánchez, Luis González Reyes, Elisa Oteros-Rozas, Camila Monasterio Martín, Alba Gutiérrez Gión, Marta Hernández Arroyo, Isabel Álvarez Vispo, José Luis Fernández Casadevante, Guillermo Amo de Paz, Marina García-Llorente, Violeta Hevia Martín, Irene Iniesta-Arandia, and Cristina Quintas-Soriano
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Biodiversidad ,Empleo ,Transición Ecológica ,Medioambiente ,Labor. Work. Working class ,HD4801-8943 ,Sociology (General) ,HM401-1281 - Abstract
En base a la investigación Biodiversidad, economía y empleo en España. Análisis y perspectivas de futuro (Oteros et al, 2022), nos centramos en las dimensiones de cambio de modelo productivo y, especialmente, en las ocupaciones y en el empleo, respetuosas con la biodiversidad. El objetivo consiste en: a) Examinar la inversión, gasto y tipo de actuación de la economía española en relación con el empleo y la biodiversidad entre 2011 y 2019;b) proyectar el empleo, bajo hipótesis de cambio hacia un modelo productivo basado en un metabolismo sociedad-naturaleza compatible respetuoso con la biodiversidad, proyectando para el periodo 2019-2028, según diferentes escenarios, de transición suave o intensa, en la estructura de ocupaciones; c) sugerir potenciales líneas de transformación necesarias -reconversiones de actividades y cambios en el tiempo de trabajo- para posibilitar una transición ecológica socialmente justa cuyas condiciones puedan prevenir los peligros que acechan a la biodiversidad en España.
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- 2023
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40. Reuse of EHRs to Support Clinical Research in a Hospital of Reference
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Miguel A, Mayer, Laura I, Furlong, Pilar, Torre, Ignasi, Planas, Francesc, Cots, Elisabet, Izquierdo, Jordi, Portabella, Javier, Rovira, Alba, Gutierrez-Sacristan, and Ferran, Sanz
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Biomedical Research ,Spain ,Data Mining ,Electronic Health Records ,Information Storage and Retrieval ,Medical Record Linkage - Abstract
Most hospitals have already implemented information systems and Electronic Health Records (EHRs), but the reuse of such data for research is still infrequent. We present a pilot project on the exploitation of clinical information from a Spanish hospital database in the context of the European Medical Information Framework project (EMIF). Specific use cases such as patients with diabetes mellitus type 2, obesity and dementia were assessed, by exploiting EHR data integrated from several separated clinical databases. The possibility to analyse the features of specific groups of patients based on their diagnosis codes can provide new data about relationships between different conditions that can contribute for decision-making, healthcare and research.
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- 2015
41. Long-term kidney function recovery and mortality after COVID-19-associated acute kidney injury: An international multi-centre observational cohort studyResearch in context
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Byorn W.L. Tan, Bryce W.Q. Tan, Amelia L.M. Tan, Emily R. Schriver, Alba Gutiérrez-Sacristán, Priyam Das, William Yuan, Meghan R. Hutch, Noelia García Barrio, Miguel Pedrera Jimenez, Noor Abu-el-rub, Michele Morris, Bertrand Moal, Guillaume Verdy, Kelly Cho, Yuk-Lam Ho, Lav P. Patel, Arianna Dagliati, Antoine Neuraz, Jeffrey G. Klann, Andrew M. South, Shyam Visweswaran, David A. Hanauer, Sarah E. Maidlow, Mei Liu, Danielle L. Mowery, Ashley Batugo, Adeline Makoudjou, Patric Tippmann, Daniela Zöller, Gabriel A. Brat, Yuan Luo, Paul Avillach, Riccardo Bellazzi, Luca Chiovato, Alberto Malovini, Valentina Tibollo, Malarkodi Jebathilagam Samayamuthu, Pablo Serrano Balazote, Zongqi Xia, Ne Hooi Will Loh, Lorenzo Chiudinelli, Clara-Lea Bonzel, Chuan Hong, Harrison G. Zhang, Griffin M. Weber, Isaac S. Kohane, Tianxi Cai, Gilbert S. Omenn, John H. Holmes, Kee Yuan Ngiam, James R. Aaron, Giuseppe Agapito, Adem Albayrak, Giuseppe Albi, Mario Alessiani, Anna Alloni, Danilo F. Amendola, François Angoulvant, Li L.L.J. Anthony, Bruce J. Aronow, Fatima Ashraf, Andrew Atz, Vidul Ayakulangara Panickan, Paula S. Azevedo, James Balshi, Brett K. Beaulieu-Jones, Brendin R. Beaulieu-Jones, Douglas S. Bell, Antonio Bellasi, Vincent Benoit, Michele Beraghi, José Luis Bernal-Sobrino, Mélodie Bernaux, Romain Bey, Surbhi Bhatnagar, Alvar Blanco-Martínez, Martin Boeker, John Booth, Silvano Bosari, Florence T. Bourgeois, Robert L. Bradford, Stéphane Bréant, Nicholas W. Brown, Raffaele Bruno, William A. Bryant, Mauro Bucalo, Emily Bucholz, Anita Burgun, Mario Cannataro, Aldo Carmona, Anna Maria Cattelan, Charlotte Caucheteux, Julien Champ, Jin Chen, Krista Y. Chen, James J. Cimino, Tiago K. Colicchio, Sylvie Cormont, Sébastien Cossin, Jean B. Craig, Juan Luis Cruz-Bermúdez, Jaime Cruz-Rojo, Mohamad Daniar, Christel Daniel, Batsal Devkota, Audrey Dionne, Rui Duan, Julien Dubiel, Scott L. DuVall, Loic Esteve, Hossein Estiri, Shirley Fan, Robert W. Follett, Thomas Ganslandt, Noelia García-Barrio, Lana X. Garmire, Nils Gehlenborg, Emily J. Getzen, Alon Geva, Tomás González González, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Pietro H. Guzzi, Larry Han, Christian Haverkamp, Derek Y. Hazard, Bing He, Darren W. Henderson, Martin Hilka, Jacqueline P. Honerlaw, Kenneth M. Huling, Richard W. Issitt, Anne Sophie Jannot, Vianney Jouhet, Ramakanth Kavuluru, Mark S. Keller, Chris J. Kennedy, Kate F. Kernan, Daniel A. Key, Katie Kirchoff, Ian D. Krantz, Detlef Kraska, Ashok K. Krishnamurthy, Sehi L'Yi, Trang T. Le, Judith Leblanc, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Qi Long, Sara Lozano-Zahonero, Kristine E. Lynch, Sadiqa Mahmood, Simran Makwana, Kenneth D. Mandl, Chengsheng Mao, Anupama Maram, Monika Maripuri, Patricia Martel, Marcelo R. Martins, Jayson S. Marwaha, Aaron J. Masino, Maria Mazzitelli, Diego R. Mazzotti, Arthur Mensch, Marianna Milano, Marcos F. Minicucci, Taha Mohseni Ahooyi, Jason H. Moore, Cinta Moraleda, Jeffrey S. Morris, Karyn L. Moshal, Sajad Mousavi, Douglas A. Murad, Shawn N. Murphy, Thomas P. Naughton, Carlos Tadeu Breda Neto, Jane Newburger, Wanjiku F.M. Njoroge, James B. Norman, Jihad Obeid, Marina P. Okoshi, Karen L. Olson, Nina Orlova, Brian D. Ostasiewski, Nathan P. Palmer, Nicolas Paris, Miguel Pedrera-Jiménez, Ashley C. Pfaff, Emily R. Pfaff, Danielle Pillion, Sara Pizzimenti, Tanu Priya, Hans U. Prokosch, Robson A. Prudente, Andrea Prunotto, Víctor Quirós-González, Rachel B. Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig-Domínguez, Pablo Rojo, Paula Rubio-Mayo, Paolo Sacchi, Carlos Sáez, Elisa Salamanca, L. Nelson Sanchez-Pinto, Arnaud Sandrin, Nandhini Santhanam, Janaina C.C. Santos, Fernando J. Sanz Vidorreta, Maria Savino, Petra Schubert, Juergen Schuettler, Luigia Scudeller, Neil J. Sebire, Pablo Serrano-Balazote, Patricia Serre, Arnaud Serret-Larmande, Mohsin Shah, Zahra Shakeri Hossein Abad, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Francesca Sperotto, Anastasia Spiridou, Zachary H. Strasser, Suzana E. Tanni, Deanne M. Taylor, Ana I. Terriza-Torres, Emma M.S. Toh, Carlo Torti, Enrico M. Trecarichi, Andrew K. Vallejos, Gael Varoquaux, Margaret E. Vella, Jill-Jênn Vie, Michele Vitacca, Kavishwar B. Wagholikar, Lemuel R. Waitman, Xuan Wang, Demian Wassermann, Martin Wolkewitz, Scott Wong, Xin Xiong, Ye Ye, Nadir Yehya, Joany M. Zachariasse, Janet J. Zahner, Alberto Zambelli, Valentina Zuccaro, and Chiara Zucco
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COVID-19 ,Acute kidney injury ,SARS-CoV-2 ,Chronic kidney disease ,Electronic health records ,Medicine (General) ,R5-920 - Abstract
Summary: Background: While acute kidney injury (AKI) is a common complication in COVID-19, data on post-AKI kidney function recovery and the clinical factors associated with poor kidney function recovery is lacking. Methods: A retrospective multi-centre observational cohort study comprising 12,891 hospitalized patients aged 18 years or older with a diagnosis of SARS-CoV-2 infection confirmed by polymerase chain reaction from 1 January 2020 to 10 September 2020, and with at least one serum creatinine value 1–365 days prior to admission. Mortality and serum creatinine values were obtained up to 10 September 2021. Findings: Advanced age (HR 2.77, 95%CI 2.53–3.04, p
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- 2023
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42. Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19
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Trang T. Le, Alba Gutiérrez-Sacristán, Jiyeon Son, Chuan Hong, Andrew M. South, Brett K. Beaulieu-Jones, Ne Hooi Will Loh, Yuan Luo, Michele Morris, Kee Yuan Ngiam, Lav P. Patel, Malarkodi J. Samayamuthu, Emily Schriver, Amelia L. M. Tan, Jason Moore, Tianxi Cai, Gilbert S. Omenn, Paul Avillach, Isaac S. Kohane, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Shyam Visweswaran, Danielle L. Mowery, and Zongqi Xia
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Medicine ,Science - Abstract
Abstract Neurological complications worsen outcomes in COVID-19. To define the prevalence of neurological conditions among hospitalized patients with a positive SARS-CoV-2 reverse transcription polymerase chain reaction test in geographically diverse multinational populations during early pandemic, we used electronic health records (EHR) from 338 participating hospitals across 6 countries and 3 continents (January–September 2020) for a cross-sectional analysis. We assessed the frequency of International Classification of Disease code of neurological conditions by countries, healthcare systems, time before and after admission for COVID-19 and COVID-19 severity. Among 35,177 hospitalized patients with SARS-CoV-2 infection, there was an increase in the proportion with disorders of consciousness (5.8%, 95% confidence interval [CI] 3.7–7.8%, p FDR
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- 2021
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43. The extracytoplasmic function sigma factor SigY is important for efficient maintenance of the Spβ prophage that encodes sublancin in Bacillus subtilis
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Alba Gutierrez, Rebecca Mendez, Jasmin Reyes, and Leticia Márquez-Magaña
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Genetics ,Spores, Bacterial ,Original Research Articles by Undergraduates ,Cytoplasm ,biology ,Prophages ,Sigma Factor ,Cell Biology ,General Medicine ,Bacillus subtilis ,biology.organism_classification ,Genome ,Microbiology ,Bacterial genetics ,Anti-Bacterial Agents ,Bacterial protein ,Bacterial Proteins ,Sigma factor ,Drug Resistance, Bacterial ,Molecular Biology ,Function (biology) ,Prophage ,Bacteria - Abstract
Many strains of the soil bacterium Bacillus subtilis are capable of producing and being resistant to the antibiotic sublancin because they harbor the Spβ prophage. This 135 kb viral genome is integrated into the circular DNA chromosome of B. subtilis, and contains genes for the production of and resistance to sublancin. We investigated the role of SigY in sublancin production and resistance, finding that it is important for efficient maintenance of the Spβ prophage. We were unable to detect the prophage in mutants lacking SigY. Additionally, these mutants were no longer able to produce sublancin, were sensitive to killing by this factor, and displayed a delay in sporulation. Wild-type cells with normal SigY activity were found to partially lose the Spβ prophage during growth and early sporulation, suggesting a mechanism for the bistable outcome of sibling cells capable of killing and of being killed. The appropriate regulation of SigY appears to be essential for growth as evidenced by the inability to disrupt the gene for its putative antisigma. Our results confirm a role for SigY in antibiotic production and resistance, as has been found for other members of the extracytoplasmic function sigma factor family in B. subtilis, and shows that this role is achieved by affecting maintenance of the Spβ prophage.
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- 2012
44. Changes in laboratory value improvement and mortality rates over the course of the pandemic: an international retrospective cohort study of hospitalised patients infected with SARS-CoV-2
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Ramakanth Kavuluru, Xuan Wang, Paul Avillach, Florence Bourgeois, Kee Yuan Ngiam, Gabriel A Brat, Isaac Kohane, Yuk-Lam Ho, Yuan Luo, Harrison G Zhang, T Cai, Kelly Cho, Vincent Benoit, Antoine Neuraz, Chuan Hong, Sehi L'Yi, Griffin Weber, Bryce W Q Tan, Alba Gutiérrez-Sacristán, Clara-Lea Bonzel, Nathan P Palmer, Alberto Malovini, Valentina Tibollo, Meghan R Hutch, Molei Liu, Riccardo Bellazzi, Luca Chiovato, Fernando J Sanz Vidorreta, Trang T Le, William Yuan, Bertrand Moal, Michele Morris, David A Hanauer, Sarah Maidlow, Kavishwar Wagholikar, Shawn Murphy, Hossein Estiri, Adeline Makoudjou, Patric Tippmann, Jeffery Klann, Robert W Follett, Nils Gehlenborg, Gilbert S Omenn, Zongqi Xia, Arianna Dagliati, Shyam Visweswaran, Lav P Patel, Danielle L Mowery, Emily R Schriver, Malarkodi Jebathilagam Samayamuthu, Sara Lozano-Zahonero, Daniela Zöller, Amelia L M Tan, Byorn W L Tan, John H Holmes, Petra Schubert, Brett K. Beaulieu-Jones, Miguel Pedrera-Jiménez, Noelia García-Barrio, Pablo Serrano-Balazote, and Andrew South
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Medicine - Published
- 2022
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45. No Effects of Photobiomodulation on Prefrontal Cortex and Hippocampal Cytochrome C Oxidase Activity and Expression of c-Fos Protein of Young Male and Female Rats
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Alba Gutiérrez-Menéndez, Juan A. Martínez, Marta Méndez, and Jorge L. Arias
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photobiomodulation ,development ,brain stimulation ,nervous system ,low-level light therapy ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The role of light in our biological processes and systems is extensively known. In addition, the use of light devices has been introduced in the field of healthcare as an opportunity to administer power light at specific wavelengths to improve our body functions and counteract light deficiency. One of these techniques is photobiomodulation (PBM), which uses red to infrared light in a non-invasive way to stimulate, heal, regenerate, and protect tissue. The main proposed mechanism of action is the stimulation of the cytochrome c oxidase (CCO), the terminal enzyme in the mitochondrial electron transport chain. PBM has achieved positive effects on brain activity and behavioral function of several adult animal models of health and disease, the potential use of this technique in developing stages is not surprising. This research aims to examine the effects of PBM on the prefrontal cortex and hippocampus of 23 day-old healthy male (n = 31) and female (n = 30) Wistar rats. Three groups of each sex were used: a PBM group which received 5 days of PBM, a device group submitted to the same conditions but without light radiation, and a control basal group. CCO histochemistry and c-Fos immunostaining were used to analyze brain metabolic activity and immediate early genes activation, respectively. Results displayed no metabolic differences between the three groups in both sexes. The same results were found in the analysis of c-Fos positive cells, reporting no differences between groups. This research, in contrast to the PBM consequences reported in healthy adult subjects, showed a lack of PBM effects in the brain markers we examined in young healthy rat brains. At this stage, brain function, specifically brain mitochondrial function, is not disturbed so it could be that the action of PBM in the mitochondria may not be detectable using the analysis of CCO activity and c-Fos protein expression. Further studies are needed to examine in depth the effects of PBM in brain development, cognitive functions and postnatal disorders, along with the exploration of the optimal light parameters.
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- 2022
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46. Authorship Correction: International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study
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Griffin M Weber, Harrison G Zhang, Sehi L'Yi, Clara-Lea Bonzel, Chuan Hong, Paul Avillach, Alba Gutiérrez-Sacristán, Nathan P Palmer, Amelia Li Min Tan, Xuan Wang, William Yuan, Nils Gehlenborg, Anna Alloni, Danilo F Amendola, Antonio Bellasi, Riccardo Bellazzi, Michele Beraghi, Mauro Bucalo, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Robert W Follett, Noelia García Barrio, David A Hanauer, Darren W Henderson, Yuk-Lam Ho, John H Holmes, Meghan R Hutch, Ramakanth Kavuluru, Katie Kirchoff, Jeffrey G Klann, Ashok K Krishnamurthy, Trang T Le, Molei Liu, Ne Hooi Will Loh, Sara Lozano-Zahonero, Yuan Luo, Sarah Maidlow, Adeline Makoudjou, Alberto Malovini, Marcelo Roberto Martins, Bertrand Moal, Michele Morris, Danielle L Mowery, Shawn N Murphy, Antoine Neuraz, Kee Yuan Ngiam, Marina P Okoshi, Gilbert S Omenn, Lav P Patel, Miguel Pedrera Jiménez, Robson A Prudente, Malarkodi Jebathilagam Samayamuthu, Fernando J Sanz Vidorreta, Emily R Schriver, Petra Schubert, Pablo Serrano Balazote, Byorn WL Tan, Suzana E Tanni, Valentina Tibollo, Shyam Visweswaran, Kavishwar B Wagholikar, Zongqi Xia, Daniela Zöller, Isaac S Kohane, Tianxi Cai, Andrew M South, and Gabriel A Brat
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Published
- 2021
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47. ATLAS2030 Pediatric Gait Exoskeleton: Changes on Range of Motion, Strength and Spasticity in Children With Cerebral Palsy. A Case Series Study
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Elena Delgado, Carlos Cumplido, Jaime Ramos, Elena Garcés, Gonzalo Puyuelo, Alberto Plaza, Mar Hernández, Alba Gutiérrez, Thomas Taverner, Marie André Destarac, Mercedes Martínez, and Elena García
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ATLAS exoskeleton ,cerebral palsy ,children ,range of motion ,rehabilitation ,robot-assisted gait training ,Pediatrics ,RJ1-570 - Abstract
Background: Cerebral Palsy (CP), the most common motor disability in childhood, affects individual's motor skills, movement and posture. This results in limited activity and a low social participation. The ATLAS2030 exoskeleton is a pediatric device that enables gait rehabilitation for children with neurological or neuromuscular pathologies with gait pathology.Purpose: To study changes in relation to range of motion (ROM), strength and spasticity in children with CP after using the ATLAS2030 gait exoskeleton.Methods and Participants: Three children (mean age 8.0 ± 2.0), two girls and one boy, two of them with GMFCS IV and one with GMFCS III, received robot-assisted gait training (RAGT) with ATLAS2030 for one month.Results: The average time of exoskeleton use was 54.7 ± 10.4 min in all sessions, and all participants were able to perform all exercises. The strength of all muscle groups was increased after the 10 sessions for the participants assessed and the limited ROM in the sagittal plane (hip and knee extension and ankle dorsiflexion) decreased after the use of the exoskeleton compared to the initial state. Spasticity was reduced at the end of the sessions after the use of the exoskeleton compared to their initial state.Conclusion: The ROM, spasticity and strength were improved after RAGT with ATLAS2030 exoskeleton in these children with CP. However, further studies with larger samples should be carried out to confirm our findings.
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- 2021
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48. International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study
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Griffin M Weber, Harrison G Zhang, Sehi L'Yi, Clara-Lea Bonzel, Chuan Hong, Paul Avillach, Alba Gutiérrez-Sacristán, Nathan P Palmer, Amelia Li Min Tan, Xuan Wang, William Yuan, Nils Gehlenborg, Anna Alloni, Danilo F Amendola, Antonio Bellasi, Riccardo Bellazzi, Michele Beraghi, Mauro Bucalo, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Robert W Follett, Noelia García Barrio, David A Hanauer, Darren W Henderson, Yuk-Lam Ho, John H Holmes, Meghan R Hutch, Ramakanth Kavuluru, Katie Kirchoff, Jeffrey G Klann, Ashok K Krishnamurthy, Trang T Le, Molei Liu, Ne Hooi Will Loh, Sara Lozano-Zahonero, Yuan Luo, Sarah Maidlow, Adeline Makoudjou, Alberto Malovini, Marcelo Roberto Martins, Bertrand Moal, Michele Morris, Danielle L Mowery, Shawn N Murphy, Antoine Neuraz, Kee Yuan Ngiam, Marina P Okoshi, Gilbert S Omenn, Lav P Patel, Miguel Pedrera Jiménez, Robson A Prudente, Malarkodi Jebathilagam Samayamuthu, Fernando J Sanz Vidorreta, Emily R Schriver, Petra Schubert, Pablo Serrano Balazote, Byorn WL Tan, Suzana E Tanni, Valentina Tibollo, Shyam Visweswaran, Kavishwar B Wagholikar, Zongqi Xia, Daniela Zöller, Isaac S Kohane, Tianxi Cai, Andrew M South, and Gabriel A Brat
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundMany countries have experienced 2 predominant waves of COVID-19–related hospitalizations. Comparing the clinical trajectories of patients hospitalized in separate waves of the pandemic enables further understanding of the evolving epidemiology, pathophysiology, and health care dynamics of the COVID-19 pandemic. ObjectiveIn this retrospective cohort study, we analyzed electronic health record (EHR) data from patients with SARS-CoV-2 infections hospitalized in participating health care systems representing 315 hospitals across 6 countries. We compared hospitalization rates, severe COVID-19 risk, and mean laboratory values between patients hospitalized during the first and second waves of the pandemic. MethodsUsing a federated approach, each participating health care system extracted patient-level clinical data on their first and second wave cohorts and submitted aggregated data to the central site. Data quality control steps were adopted at the central site to correct for implausible values and harmonize units. Statistical analyses were performed by computing individual health care system effect sizes and synthesizing these using random effect meta-analyses to account for heterogeneity. We focused the laboratory analysis on C-reactive protein (CRP), ferritin, fibrinogen, procalcitonin, D-dimer, and creatinine based on their reported associations with severe COVID-19. ResultsData were available for 79,613 patients, of which 32,467 were hospitalized in the first wave and 47,146 in the second wave. The prevalence of male patients and patients aged 50 to 69 years decreased significantly between the first and second waves. Patients hospitalized in the second wave had a 9.9% reduction in the risk of severe COVID-19 compared to patients hospitalized in the first wave (95% CI 8.5%-11.3%). Demographic subgroup analyses indicated that patients aged 26 to 49 years and 50 to 69 years; male and female patients; and black patients had significantly lower risk for severe disease in the second wave than in the first wave. At admission, the mean values of CRP were significantly lower in the second wave than in the first wave. On the seventh hospital day, the mean values of CRP, ferritin, fibrinogen, and procalcitonin were significantly lower in the second wave than in the first wave. In general, countries exhibited variable changes in laboratory testing rates from the first to the second wave. At admission, there was a significantly higher testing rate for D-dimer in France, Germany, and Spain. ConclusionsPatients hospitalized in the second wave were at significantly lower risk for severe COVID-19. This corresponded to mean laboratory values in the second wave that were more likely to be in typical physiological ranges on the seventh hospital day compared to the first wave. Our federated approach demonstrated the feasibility and power of harmonizing heterogeneous EHR data from multiple international health care systems to rapidly conduct large-scale studies to characterize how COVID-19 clinical trajectories evolve.
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- 2021
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49. Effects of Climate and Atmospheric Nitrogen Deposition on Early to Mid-Term Stage Litter Decomposition Across Biomes
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TaeOh Kwon, Hideaki Shibata, Sebastian Kepfer-Rojas, Inger K. Schmidt, Klaus S. Larsen, Claus Beier, Björn Berg, Kris Verheyen, Jean-Francois Lamarque, Frank Hagedorn, Nico Eisenhauer, Ika Djukic, TeaComposition Network, Inger Kappel Schmidt, Klaus Steenberg Larsen, Jean Francois Lamarque, Adriano Caliman, Alain Paquette, Alba Gutiérrez-Girón, Alessandro Petraglia, Algirdas Augustaitis, Amélie Saillard, Ana Carolina Ruiz-Fernández, Ana I. Sousa, Ana I. Lillebø, Anderson da Rocha Gripp, Andrea Lamprecht, Andreas Bohner, André-Jean Francez, Andrey Malyshev, Andrijana Andrić, Angela Stanisci, Anita Zolles, Anna Avila, Anna-Maria Virkkala, Anne Probst, Annie Ouin, Anzar A. Khuroo, Arne Verstraeten, Artur Stefanski, Aurora Gaxiola, Bart Muys, Beatriz Gozalo, Bernd Ahrends, Bo Yang, Brigitta Erschbamer, Carmen Eugenia Rodríguez Ortíz, Casper T. Christiansen, Céline Meredieu, Cendrine Mony, Charles Nock, Chiao-Ping Wang, Christel Baum, Christian Rixen, Christine Delire, Christophe Piscart, Christopher Andrews, Corinna Rebmann, Cristina Branquinho, Dick Jan, Dirk Wundram, Dušanka Vujanović, E. Carol Adair, Eduardo Ordóñez-Regil, Edward R. Crawford, Elena F. Tropina, Elisabeth Hornung, Elli Groner, Eric Lucot, Esperança Gacia, Esther Lévesque, Evanilde Benedito, Evgeny A. Davydov, Fábio Padilha Bolzan, Fernando T. Maestre, Florence Maunoury-Danger, Florian Kitz, Florian Hofhansl, Flurin Sutter, Francisco de Almeida Lobo, Franco Leadro Souza, Franz Zehetner, Fulgence Kouamé Koffi, Georg Wohlfahrt, Giacomo Certini, Gisele Daiane Pinha, Grizelle González, Guylaine Canut, Harald Pauli, Héctor A. Bahamonde, Heike Feldhaar, Heinke Jäger, Helena Cristina Serrano, Hélène Verheyden, Helge Bruelheide, Henning Meesenburg, Hermann Jungkunst, Hervé Jactel, Hiroko Kurokawa, Ian Yesilonis, Inara Melece, Inge van Halder, Inmaculada García Quirós, István Fekete, Ivika Ostonen, Jana Borovská, Javier Roales, Jawad Hasan Shoqeir, Jean-Christophe Lata, Jean-Luc Probst, Jeyanny Vijayanathan, Jiri Dolezal, Joan-Albert Sanchez-Cabeza, Joël Merlet, John Loehr, Jonathan von Oppen, Jörg Löffler, José Luis Benito Alonso, José-Gilberto Cardoso-Mohedano, Josep Peñuelas, Joseph C. Morina, Juan Darío Quinde, Juan J. Jiménez, Juha M. Alatalo, Julia Seeber, Julia Kemppinen, Jutta Stadler, Kaie Kriiska, Karel Van den Meersche, Karibu Fukuzawa, Katalin Szlavecz, Katalin Juhos, Katarína Gerhátová, Kate Lajtha, Katie Jennings, Katja Tielbörger, Kazuhiko Hoshizaki, Ken Green, Klaus Steinbauer, Laryssa Pazianoto, Laura Dienstbach, Laura Yahdjian, Laura J. Williams, Laurel Brigham, Lee Hanna, Liesbeth van den Brink, Lindsey Rustad, Lourdes Morillas, Luciana Silva Carneiro, Luciano Di Martino, Luis Villar, Luísa Alícida Fernandes Tavares, Madison Morley, Manuela Winkler, Marc Lebouvier, Marcello Tomaselli, Marcus Schaub, Maria Glushkova, Maria Guadalupe Almazan Torres, Marie-Anne de Graaff, Marie-Noëlle Pons, Marijn Bauters, Marina Mazón, Mark Frenzel, Markus Wagner, Markus Didion, Maroof Hamid, Marta Lopes, Martha Apple, Martin Weih, Matej Mojses, Matteo Gualmini, Matthew Vadeboncoeur, Michael Bierbaumer, Michael Danger, Michael Scherer-Lorenzen, Michal Růžek, Michel Isabellon, Michele Di Musciano, Michele Carbognani, Miglena Zhiyanski, Mihai Puşcaş, Milan Barna, Mioko Ataka, Miska Luoto, Mohammed H. Alsafaran, Nadia Barsoum, Naoko Tokuchi, Nathalie Korboulewsky, Nicolas Lecomte, Nina Filippova, Norbert Hölzel, Olga Ferlian, Oscar Romero, Osvaldo Pinto-Jr, Pablo Peri, Pavel Dan Turtureanu, Peter Haase, Peter Macreadie, Peter B. Reich, Petr Petřík, Philippe Choler, Pierre Marmonier, Quentin Ponette, Rafael Dettogni Guariento, Rafaella Canessa, Ralf Kiese, Rebecca Hewitt, Robert Weigel, Róbert Kanka, Roberto Cazzolla Gatti, Rodrigo Lemes Martins, Romà Ogaya, Romain Georges, Rosario G. Gavilán, Sally Wittlinger, Sara Puijalon, Satoshi Suzuki, Schädler Martin, Schmidt Anja, Sébastien Gogo, Silvio Schueler, Simon Drollinger, Simone Mereu, Sonja Wipf, Stacey Trevathan-Tackett, Stefan Stoll, Stefan Löfgren, Stefan Trogisch, Steffen Seitz, Stephan Glatzel, Susanna Venn, Sylvie Dousset, Taiki Mori, Takanori Sato, Takuo Hishi, Tatsuro Nakaji, Theurillat Jean-Paul, Thierry Camboulive, Thomas Spiegelberger, Thomas Scholten, Thomas J. Mozdzer, Till Kleinebecker, Tomáš Rusňák, Tshililo Ramaswiela, Tsutom Hiura, Tsutomu Enoki, Tudor-Mihai Ursu, Umberto Morra di Cella, Ute Hamer, Valentin Klaus, Valter Di Cecco, Vanessa Rego, Veronika Fontana, Veronika Piscová, Vincent Bretagnolle, Vincent Maire, Vinicius Farjalla, Vittoz Pascal, Wenjun Zhou, Wentao Luo, William Parker, Yasuhiro Utsumi, Yuji Kominami, Zsolt Kotroczó, and Zsolt Tóth
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tea bag ,Green tea ,Rooibos tea ,litter decomposition ,carbon turnover ,nitrogen deposition ,Forestry ,SD1-669.5 ,Environmental sciences ,GE1-350 - Abstract
Litter decomposition is a key process for carbon and nutrient cycling in terrestrial ecosystems and is mainly controlled by environmental conditions, substrate quantity and quality as well as microbial community abundance and composition. In particular, the effects of climate and atmospheric nitrogen (N) deposition on litter decomposition and its temporal dynamics are of significant importance, since their effects might change over the course of the decomposition process. Within the TeaComposition initiative, we incubated Green and Rooibos teas at 524 sites across nine biomes. We assessed how macroclimate and atmospheric inorganic N deposition under current and predicted scenarios (RCP 2.6, RCP 8.5) might affect litter mass loss measured after 3 and 12 months. Our study shows that the early to mid-term mass loss at the global scale was affected predominantly by litter quality (explaining 73% and 62% of the total variance after 3 and 12 months, respectively) followed by climate and N deposition. The effects of climate were not litter-specific and became increasingly significant as decomposition progressed, with MAP explaining 2% and MAT 4% of the variation after 12 months of incubation. The effect of N deposition was litter-specific, and significant only for 12-month decomposition of Rooibos tea at the global scale. However, in the temperate biome where atmospheric N deposition rates are relatively high, the 12-month mass loss of Green and Rooibos teas decreased significantly with increasing N deposition, explaining 9.5% and 1.1% of the variance, respectively. The expected changes in macroclimate and N deposition at the global scale by the end of this century are estimated to increase the 12-month mass loss of easily decomposable litter by 1.1–3.5% and of the more stable substrates by 3.8–10.6%, relative to current mass loss. In contrast, expected changes in atmospheric N deposition will decrease the mid-term mass loss of high-quality litter by 1.4–2.2% and that of low-quality litter by 0.9–1.5% in the temperate biome. Our results suggest that projected increases in N deposition may have the capacity to dampen the climate-driven increases in litter decomposition depending on the biome and decomposition stage of substrate.
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- 2021
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50. Two Interventions to Improve Knowledge of Scientific and Dissemination Articles in First-Year University Students
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Candela Zorzo, Cristina Fernández-Baizán, Alba Gutiérrez-Menéndez, María Banqueri, Sara G Higarza, and Marta Méndez
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scientific sources ,dissemination ,Pubmed ,neuroscience ,university students ,Psychology ,BF1-990 - Abstract
The representations of science in mass media have shown a significant increase in the last years. However, mass media dissemination activities can extend to pseudoscience due to the fact that not all scientific news are published with the same rigour. Thus, we aimed to develop two theoretical-practical interventions among first-year university students with the purpose of improving their knowledge about scientific studies and original scientific sources, as well as to critically analyze dissemination of scientific research in media. The interventions had a positive impact on knowledge about scientific information sources, particularly Pubmed, in addition to reducing the number of incorrect features linked to both scientific and dissemination articles, suggesting the importance of interventions focused on misconceptions. However, students showed knowledge of correct features of scientific articles, independently of our intervention, and they made more mistakes when attributing incorrect features to scientific articles when compared to dissemination ones.
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- 2021
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